Sequence filename : 				 figure1.phylip
Data type :             			 aa
Sequence format : 				 sequential
Number of data sets : 				 1
Nb of bootstrapped data sets : 			 500
Model name : 					 WAG
Proportion of invariable sites :		 0.000000
Number of subst. rate categs : 			 4
Gamma distribution parameter : 			 1.000000
Starting tree : 				 BIONJ
Optimise tree topology : 			 yes
Optimise branch lengths and rate parameters : 	 yes
. Compressing sequences...
. Computing pairwise distances...
. Building BIONJ tree...
. Log(lk) :               * ->   -28614.125114 
. Log(lk) :   -28614.125114 ->   -28376.476425   7 swaps done 
. Log(lk) :   -28376.476425 ->   -28300.578503   6 swaps done 
. Log(lk) :   -28300.578503 ->   -28255.980504   5 swaps done 
. Log(lk) :   -28255.980504 ->   -28231.125924   3 swaps done 
. Log(lk) :   -28231.125924 ->   -28222.831582   3 swaps done 
. Log(lk) :   -28222.831582 ->   -28210.198807   4 swaps done 
. Log(lk) :   -28210.198807 ->   -28206.567515   3 swaps done 
. Log(lk) :   -28206.567515 ->   -28199.939919   3 swaps done 
. Log(lk) :   -28199.939919 ->   -28197.406846   2 swaps done 
. Log(lk) :   -28197.406846 ->   -28192.305949   2 swaps done 
. Log(lk) :   -28192.305949 ->   -28189.584508   2 swaps done 
. Log(lk) :   -28189.584508 ->   -28183.820649   2 swaps done 
. Log(lk) :   -28183.820649 ->   -28181.304696   3 swaps done 
. Log(lk) :   -28181.304696 ->   -28176.139756   3 swaps done 
. Log(lk) :   -28176.139756 ->   -28175.458232   3 swaps done 
. Log(lk) :   -28175.458232 ->   -28172.199322   3 swaps done 
. Log(lk) :   -28172.199322 ->   -28173.102419   3 swaps done 
. Moving backward (topology + branch lengths) 
. Log(lk) :   -28172.199322 ->   -28169.915526   3 swaps done 
. Log(lk) :   -28169.915526 ->   -28168.788204   0 swap  done
. Log(lk) :   -28168.788204 ->   -28168.395618   0 swap  done
. Log(lk) :   -28168.395618 ->   -28168.210576   0 swap  done
. Log(lk) :   -28168.210576 ->   -28168.119031   0 swap  done
. Log(lk) :   -28168.119031 ->   -28168.073141   0 swap  done
. Log(lk) :   -28168.073141 ->   -28168.049992   0 swap  done
. Last optimization step...
. Log(lk) :               * ->   -28168.033546 
. Log(lk) :   -28168.033546 ->   -28168.027720 
. Log(lk) :   -28168.027720 ->   -28168.026470 
. Log(lk) :   -28168.026470 ->   -28168.026150 
. Log(lk) :   -28168.026150 ->   -28168.026085 
. Log(lk) :   -28168.026085 ->   -28168.026069 
. Log(lk) :   -28168.026069 ->   -28168.026065 
. Log(lk) :   -28168.026065 ->   -28168.026064 
. Non parametric bootstrap analysis 
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. Time used 29h42m30s
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