Sequence filename : 				 supp6.txt.phy
Data type :             			 aa
Sequence format : 				 interleaved
Number of data sets : 				 1
Nb of bootstrapped data sets : 			 500
Model name : 					 WAG
Proportion of invariable sites :		 0.000000
Number of subst. rate categs : 			 4
Gamma distribution parameter : 			 estimated
Starting tree : 				 BIONJ
Optimise tree topology : 			 yes
Optimise branch lengths and rate parameters : 	 yes
. Compressing sequences...
. Computing pairwise distances...
. Building BIONJ tree...
. Log(lk) :               * ->   -49668.104712 
. Log(lk) :   -49668.104712 ->   -49275.707317  10 swaps done 
. Log(lk) :   -49275.707317 ->   -49134.547028  11 swaps done 
. Log(lk) :   -49134.547028 ->   -49104.535191   7 swaps done 
. Optimisation of the gamma shape parameter...
. Log(lk) :   -49058.721573 ->   -49045.776355   6 swaps done 
. Log(lk) :   -49045.776355 ->   -49017.311023   4 swaps done 
. Log(lk) :   -49017.311023 ->   -49003.604818   4 swaps done 
. Log(lk) :   -49003.604818 ->   -48997.674319   4 swaps done 
. Optimisation of the gamma shape parameter...
. Log(lk) :   -48997.673996 ->   -48990.421692   4 swaps done 
. Log(lk) :   -48990.421692 ->   -48983.916899   4 swaps done 
. Log(lk) :   -48983.916899 ->   -48977.695106   1 swap  done
. Log(lk) :   -48977.695106 ->   -48976.728800   1 swap  done
. Optimisation of the gamma shape parameter...
. Log(lk) :   -48976.728655 ->   -48976.447762   1 swap  done
. Log(lk) :   -48976.447762 ->   -48976.256950   1 swap  done
. Log(lk) :   -48976.256950 ->   -48976.272601   1 swap  done
. Moving backward (topology + branch lengths) 
. Optimisation of the gamma shape parameter...
. Log(lk) :   -48976.256950 ->   -48976.120664   1 swap  done
. Optimisation of the gamma shape parameter...
. Log(lk) :   -48976.120664 ->   -48976.053729   0 swap  done
. Log(lk) :   -48976.053729 ->   -48976.024891   0 swap  done
. Log(lk) :   -48976.024891 ->   -48976.001838   1 swap  done
. Log(lk) :   -48976.001838 ->   -48975.889031   0 swap  done
. Optimisation of the gamma shape parameter...
. Log(lk) :   -48975.887490 ->   -48975.854719   0 swap  done
. Log(lk) :   -48975.854719 ->   -48975.840967   0 swap  done
. Log(lk) :   -48975.840967 ->   -48975.833927   0 swap  done
. Log(lk) :   -48975.833927 ->   -48975.829724   0 swap  done
. Optimisation of the gamma shape parameter...
. Log(lk) :   -48975.828722 ->   -48975.825309   0 swap  done
. Last optimization step...
. Log(lk) :               * ->   -48975.821651 
. Optimisation of the gamma shape parameter...
. Log(lk) :   -48975.821651 ->   -48975.818989 
. Optimisation of the gamma shape parameter...
. Log(lk) :   -48975.818989 ->   -48975.817425 
. Optimisation of the gamma shape parameter...
. Log(lk) :   -48975.817425 ->   -48975.816500 
. Optimisation of the gamma shape parameter...
. Log(lk) :   -48975.816500 ->   -48975.815931 
. Optimisation of the gamma shape parameter...
. Log(lk) :   -48975.815931 ->   -48975.815610 
. Optimisation of the gamma shape parameter...
. Log(lk) :   -48975.815610 ->   -48975.815414 
. Optimisation of the gamma shape parameter...
. Log(lk) :   -48975.815414 ->   -48975.815304 
. Optimisation of the gamma shape parameter...
. Log(lk) :   -48975.815304 ->   -48975.815237 
. Optimisation of the gamma shape parameter...
. Log(lk) :   -48975.815237 ->   -48975.815199 
. Optimisation of the gamma shape parameter...
. Log(lk) :   -48975.815199 ->   -48975.815176 
. Optimisation of the gamma shape parameter...
. Log(lk) :   -48975.815176 ->   -48975.815163 
. Optimisation of the gamma shape parameter...
. Log(lk) :   -48975.815163 ->   -48975.815156 
. Optimisation of the gamma shape parameter...
. Log(lk) :   -48975.815156 ->   -48975.815151 
. Optimisation of the gamma shape parameter...
. Log(lk) :   -48975.815151 ->   -48975.815148 
. Optimisation of the gamma shape parameter...
. Log(lk) :   -48975.815148 ->   -48975.815147 
. Optimisation of the gamma shape parameter...
. Log(lk) :   -48975.815147 ->   -48975.815146 
. Optimisation of the gamma shape parameter...
. Non parametric bootstrap analysis 
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. Time used 51h46m56s
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