Sequence filename : 				 f2new1.txt.phy
Data type :             			 aa
Sequence format : 				 interleaved
Number of data sets : 				 1
Nb of bootstrapped data sets : 			 500
Model name : 					 WAG
Proportion of invariable sites :		 0.000000
Number of subst. rate categs : 			 4
Gamma distribution parameter : 			 estimated
Starting tree : 				 BIONJ
Optimise tree topology : 			 yes
Optimise branch lengths and rate parameters : 	 yes
. Compressing sequences...
. Computing pairwise distances...
. Building BIONJ tree...
. Log(lk) :               * ->   -28807.775344 
. Log(lk) :   -28807.775344 ->   -28576.332414   9 swaps done 
. Log(lk) :   -28576.332414 ->   -28542.840807   3 swaps done 
. Log(lk) :   -28542.840807 ->   -28538.290784   3 swaps done 
. Optimisation of the gamma shape parameter...
. Log(lk) :   -28491.139388 ->   -28488.325270   4 swaps done 
. Log(lk) :   -28488.325270 ->   -28485.999302   3 swaps done 
. Log(lk) :   -28485.999302 ->   -28485.703542   3 swaps done 
. Log(lk) :   -28485.703542 ->   -28484.846332   2 swaps done 
. Optimisation of the gamma shape parameter...
. Log(lk) :   -28484.715438 ->   -28485.316312   2 swaps done 
. Moving backward (topology + branch lengths) 
. Optimisation of the gamma shape parameter...
. Log(lk) :   -28484.715438 ->   -28481.470703   2 swaps done 
. Log(lk) :   -28481.470703 ->   -28481.202763   0 swap  done
. Log(lk) :   -28481.202763 ->   -28481.159224   0 swap  done
. Optimisation of the gamma shape parameter...
. Log(lk) :   -28481.159211 ->   -28481.146280   0 swap  done
. Log(lk) :   -28481.146280 ->   -28481.141704   0 swap  done
. Log(lk) :   -28481.141704 ->   -28481.139905   0 swap  done
. Log(lk) :   -28481.139905 ->   -28481.139141   0 swap  done
. Last optimization step...
. Log(lk) :               * ->   -28481.138668 
. Optimisation of the gamma shape parameter...
. Log(lk) :   -28481.138668 ->   -28481.138521 
. Optimisation of the gamma shape parameter...
. Log(lk) :   -28481.138521 ->   -28481.138485 
. Optimisation of the gamma shape parameter...
. Log(lk) :   -28481.138485 ->   -28481.138474 
. Optimisation of the gamma shape parameter...
. Log(lk) :   -28481.138474 ->   -28481.138470 
. Optimisation of the gamma shape parameter...
. Log(lk) :   -28481.138470 ->   -28481.138469 
. Optimisation of the gamma shape parameter...
. Log(lk) :   -28481.138469 ->   -28481.138468 
. Optimisation of the gamma shape parameter...
. Non parametric bootstrap analysis 
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. Time used 22h20m39s
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