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["Transcriptional responses of the bacterium Burkholderia terrae BS001 to the fungal host Lyophyllum sp. strain Karsten under soil-mimicking conditions\n\nIrshad Ul Haq* Francisco Dini-Andreote and Jan Dirk van Elsas\nMicrobial Ecology, Groningen Institute of Evolutionary Life Sciences (GELIFES), Nijenborgh 7, 9747 AG, University of Groningen, The Netherlands.\n\n*Corresponding author: Irshad Ul Haq, Microbial Ecology, Groningen Institute of Evolutionary Life Sciences (GELIFES), Nijenborgh 7, 9747 AG, University of Groningen, The Netherlands.\nE‒mail address: i.u.haq@rug.nl\n"]
{"$rows_empty":10}
[{"$nulls":3},"Microbial Ecology"]
[{"$nulls":3},"List of downregulated genes encoding various membrane transporters at time point 1 (Day 3)"]
[]
["Label","Type","Name","Product","baseMean","baseMeanA","baseMeanB","foldChange","log2FoldChange","pval"]
["AKAUv1_760072","CDS","pcaK","4-hydroxybenzoate transporter PcaK",3.43,5.66,1.21,0.21,-2.22,{"v":0.00365,"d":"3.65E-03"},null,"Key"]
["AKAUv1_2430013","CDS","-","ABC sugar transporter, periplasmic ligand binding protein",3.26,4.9,1.61,0.33,-1.61,{"v":0.0143,"d":"1.43E-02"},null,"baseMean = normalized average read counts"]
["AKAUv1_1350005","CDS","-","ABC transporter",2.85,4.49,1.21,0.27,-1.89,{"v":0.022,"d":"2.20E-02"},null,"baseMeanA = normalized average read counts for condtion A (Bacteria) control"]
["AKAUv1_2530049","CDS","-","ABC transporter permease",2.7,4.18,1.21,0.29,-1.79,{"v":0.00826,"d":"8.26E-03"},null,"baseMeanB = normalized average read counts for condition B (Bacteria + Fungus)"]
["AKAUv1_1410017","CDS","-","ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component",3.62,6.03,1.21,0.2,-2.31,{"v":0.00385,"d":"3.85E-03"}]
["AKAUv1_3190064","CDS","-","ABC-type nitrate/sulfonate/bicarbonate transport system, permease component",2.57,3.92,1.21,0.31,-1.69,{"v":0.0242,"d":"2.42E-02"}]
["AKAUv1_510095","CDS","-","ABC-type sugar transport system, periplasmic component",2.34,3.48,1.21,0.35,-1.52,{"v":0.0527,"d":"5.27E-02"}]
["AKAUv1_1470004","CDS","actP","acetate transporter",4.48,7.34,1.61,0.22,-2.19,{"v":0.0019,"d":"1.90E-03"}]
["AKAUv1_140036","CDS","actP","acetate transporter",4.03,6.46,1.61,0.25,-2,{"v":0.00424,"d":"4.24E-03"}]
["AKAUv1_1080005","CDS","actP","acetate transporter",7.24,11,3.58,0.33,-1.6,{"v":0.00281,"d":"2.81E-03"}]
["AKAUv1_3190042","CDS","-","Amino acid ABC transporter substrate-binding protein",4.24,6.41,2.06,0.32,-1.63,{"v":0.0182,"d":"1.82E-02"}]
["AKAUv1_1080398","CDS","-","Binding-protein-dependent transport system inner membrane protein",3.22,5.24,1.21,0.23,-2.11,{"v":0.00461,"d":"4.61E-03"}]
["AKAUv1_3020061","CDS","-","Binding-protein-dependent transport system inner membrane protein",2.94,4.66,1.21,0.26,-1.94,{"v":0.0082,"d":"8.20E-03"}]
["AKAUv1_3190065","CDS","-","Binding-protein-dependent transport system inner membrane protein",2.63,4.05,1.21,0.3,-1.74,{"v":0.0115,"d":"1.15E-02"}]
["AKAUv1_2570165","CDS","-","Binding-protein-dependent transport system inner membrane protein",2.62,4.03,1.21,0.3,-1.73,{"v":0.0117,"d":"1.17E-02"}]
["AKAUv1_110136","CDS","-","Binding-protein-dependent transport systems inner membrane component",2.77,4.33,1.21,0.28,-1.84,{"v":0.0063,"d":"6.30E-03"}]
["AKAUv1_1780016","CDS","exbD","Biopolymer transport protein exbD1",3.12,4.63,1.61,0.35,-1.52,{"v":0.0973,"d":"9.73E-02"}]
["AKAUv1_1010022","CDS","dctA","C4-dicarboxylic acid, orotate and citrate transporter",3.97,6.74,1.21,0.18,-2.47,{"v":0.00111,"d":"1.11E-03"}]
["AKAUv1_2570201","CDS","dctA","C4-dicarboxylic acid, orotate and citrate transporter",3.95,5.89,2.01,0.34,-1.55,{"v":0.0208,"d":"2.08E-02"}]
["AKAUv1_140060","CDS","-","Cation efflux transporter",6.67,10,3.1,0.3,-1.73,{"v":0.00117,"d":"1.17E-03"}]
["AKAUv1_2570236","CDS","-","conserved hypothetical protein; putative flavoprotein involved in K+ transport",3.11,4.62,1.61,0.35,-1.52,{"v":0.0418,"d":"4.18E-02"}]
["AKAUv1_1080380","CDS","cusA","copper/silver efflux system, membrane component",7.53,14,1.21,{"v":0.0876,"d":"8.76E-02"},-3.51,{"v":5.11e-08,"d":"5.11E-08"}]
["AKAUv1_760170","CDS","dppC","dipeptide transporter ; membrane component of ABC superfamily",3.2,5.18,1.21,0.23,-2.09,{"v":0.0149,"d":"1.49E-02"}]
["AKAUv1_2820036","CDS","bepE","Efflux pump membrane transporter BepE",4.99,7.97,2.01,0.25,-1.99,{"v":0.00279,"d":"2.79E-03"}]
["AKAUv1_760105","CDS","bepE","Efflux pump membrane transporter BepE",6.83,10,3.57,0.35,-1.5,{"v":0.00421,"d":"4.21E-03"}]
["AKAUv1_160028","CDS","-","Efflux transporter, outer membrane factor lipoprotein, NodT family",3.18,5.14,1.21,0.24,-2.08,{"v":0.0114,"d":"1.14E-02"}]
["AKAUv1_1080339","CDS","-","Efflux transporter, outer membrane factor lipoprotein, NodT family",4.12,6.31,1.94,0.31,-1.7,{"v":0.0155,"d":"1.55E-02"}]
["AKAUv1_3280037","CDS","-","EmrB/QacA family drug resistance transporter",2.77,4.33,1.21,0.28,-1.84,{"v":0.0063,"d":"6.30E-03"}]
["AKAUv1_1080048","CDS","-","Fe3+ siderophore ABC transporter inner membrane protein",2.62,4.03,1.21,0.3,-1.73,{"v":0.0117,"d":"1.17E-02"}]
["AKAUv1_930055","CDS","galT","Gallate transporter",2.65,4.09,1.21,0.3,-1.75,{"v":0.0262,"d":"2.62E-02"}]
["AKAUv1_140016","CDS","galT","Gallate transporter",2.33,3.46,1.21,0.35,-1.51,{"v":0.0343,"d":"3.43E-02"}]
["AKAUv1_3190147","CDS","proP","glycine/betaine transporter (MFS superfamily)",4.44,7.21,1.67,0.23,-2.11,{"v":0.00256,"d":"2.56E-03"}]
["AKAUv1_1660032","CDS","yghK","glycolate transporter",2.71,4.2,1.21,0.29,-1.79,{"v":0.0128,"d":"1.28E-02"}]
["AKAUv1_3020048","CDS","braF","High-affinity branched-chain amino acid transport ATP-binding protein BraF",3.21,4.85,1.57,0.32,-1.62,{"v":0.044,"d":"4.40E-02"}]
["AKAUv1_510002","CDS","braE","High-affinity branched-chain amino acid transport system permease protein BraE",3.32,4.98,1.67,0.33,-1.58,{"v":0.0241,"d":"2.41E-02"}]
["AKAUv1_510004","CDS","livK","leucine transporter subunit ; periplasmic-binding component of ABC superfamily",3.81,6.4,1.21,0.19,-2.4,{"v":0.00122,"d":"1.22E-03"}]
["AKAUv1_110171","CDS","livF","leucine/isoleucine/valine transporter subunit ; ATP-binding component of ABC superfamily",3.54,5.41,1.67,0.31,-1.7,{"v":0.0429,"d":"4.29E-02"}]
["AKAUv1_510001","CDS","livG","leucine/isoleucine/valine transporter subunit ; ATP-binding component of ABC superfamily",2.49,3.77,1.21,0.32,-1.64,{"v":0.0225,"d":"2.25E-02"}]
["AKAUv1_2560052","CDS","yjjL","L-galactonate transporter",2.53,3.85,1.21,0.31,-1.67,{"v":0.053,"d":"5.30E-02"}]
["AKAUv1_1080433","CDS","-","Major facilitator family transporter",3.09,4.98,1.21,0.24,-2.04,{"v":0.0106,"d":"1.06E-02"}]
["AKAUv1_2820032","CDS","-","Major facilitator superfamily drug efflux transporter",5,7.64,2.37,0.31,-1.69,{"v":0.00757,"d":"7.57E-03"}]
["AKAUv1_1930146","CDS","-","Major facilitator transporter",3.7,6.18,1.21,0.2,-2.35,{"v":0.00274,"d":"2.74E-03"}]
["AKAUv1_2180009","CDS","-","Major facilitator transporter",4.42,7.27,1.57,0.22,-2.21,{"v":0.00437,"d":"4.37E-03"}]
["AKAUv1_470016","CDS","-","Major facilitator transporter",3.09,4.98,1.21,0.24,-2.04,{"v":0.0106,"d":"1.06E-02"}]
["AKAUv1_2870098","CDS","-","Major facilitator transporter",4.01,6.36,1.67,0.26,-1.93,{"v":0.0129,"d":"1.29E-02"}]
["AKAUv1_3020032","CDS","-","Major facilitator transporter",3.88,5.75,2.01,0.35,-1.52,{"v":0.0347,"d":"3.47E-02"}]
["AKAUv1_3020020","CDS","mdcM","malonate transporter",2.86,4.51,1.21,0.27,-1.89,{"v":0.0205,"d":"2.05E-02"}]
["AKAUv1_910019","CDS","-","Metabolite transport protein",6.24,9.29,3.19,0.34,-1.54,{"v":0.00683,"d":"6.83E-03"}]
["AKAUv1_400025","CDS","-","MFS transporter",3.51,5.4,1.61,0.3,-1.75,{"v":0.0152,"d":"1.52E-02"}]
["AKAUv1_2460008","CDS","-","Monosaccharide-transporting ATPase",2.75,4.28,1.21,0.28,-1.82,{"v":0.0188,"d":"1.88E-02"}]
["AKAUv1_1600014","CDS","-","Nitrate/nitrite transporter",2.34,3.48,1.21,0.35,-1.52,{"v":0.0527,"d":"5.27E-02"}]
["AKAUv1_3200008","CDS","oppF","oligopeptide transporter subunit ; ATP-binding component of ABC superfamily",3.49,5.42,1.57,0.29,-1.78,{"v":0.0337,"d":"3.37E-02"}]
["AKAUv1_3200004","CDS","oppA","oligopeptide transporter subunit ; periplasmic-binding component of ABC superfamily",3.08,4.96,1.21,0.24,-2.03,{"v":0.00727,"d":"7.27E-03"}]
["AKAUv1_1080407","CDS","dppA","Periplasmic dipeptide transport protein",3.79,5.98,1.61,0.27,-1.89,{"v":0.00647,"d":"6.47E-03"}]
["AKAUv1_1470047","CDS","pit","phosphate transporter",3.73,6.25,1.21,0.19,-2.37,{"v":0.00625,"d":"6.25E-03"}]
["AKAUv1_3190058","CDS","-","Polar amino acid ABC transporter inner membrane subunit",3.04,4.86,1.21,0.25,-2,{"v":0.0189,"d":"1.89E-02"}]
["AKAUv1_1080242","CDS","-","Polar amino acid ABC transporter inner membrane subunit",2.99,4.77,1.21,0.25,-1.98,{"v":0.00709,"d":"7.09E-03"}]
["AKAUv1_1080248","CDS","-","Polar amino acid ABC transporter inner membrane subunit",4.9,7.39,2.41,0.33,-1.62,{"v":0.012,"d":"1.20E-02"}]
["AKAUv1_540062","CDS","-","Polar amino acid ABC transporter periplasmic ligand-binding protein",2.41,3.61,1.21,0.34,-1.57,{"v":0.0225,"d":"2.25E-02"}]
["AKAUv1_1050007","CDS","-","Potassium-tellurite ethidium and proflavin transporter",2.72,4.23,1.21,0.29,-1.8,{"v":0.0184,"d":"1.84E-02"}]
["AKAUv1_1080073","CDS","-","Purine-cytosine permease-like transporter",4.49,7.41,1.57,0.21,-2.24,{"v":0.00305,"d":"3.05E-03"}]
["AKAUv1_1080039","CDS","mmlH","putative 4-methylmuconolactone transporter",3.22,4.83,1.61,0.33,-1.58,{"v":0.0317,"d":"3.17E-02"}]
["AKAUv1_160062","CDS","-","putative branched-chain amino acid transport protein (ABC superfamily, atp_bind)",2.65,4.09,1.21,0.3,-1.75,{"v":0.0262,"d":"2.62E-02"}]
["AKAUv1_830018","CDS","-","putative branched-chain amino acid transport protein (ABC superfamily, atp_bind)",4.93,7.49,2.37,0.32,-1.66,{"v":0.027,"d":"2.70E-02"}]
["AKAUv1_2570029","CDS","-","putative Glucose transporter",3.29,5.38,1.21,0.23,-2.15,{"v":0.00624,"d":"6.24E-03"}]
["AKAUv1_2570086","CDS","nicT","putative metabolite transport protein NicT",5.83,9.65,2.01,0.21,-2.26,{"v":0.000552,"d":"5.52E-04"}]
["AKAUv1_1880012","CDS","-","putative nitrate transporter transmembrane protein (MFS superfamily)",3.29,5.38,1.21,0.23,-2.15,{"v":0.00624,"d":"6.24E-03"}]
["AKAUv1_2570217","CDS","-","putative sialic acid transporter",5.56,8.61,2.52,0.29,-1.77,{"v":0.00246,"d":"2.46E-03"}]
["AKAUv1_760146","CDS","ttuB","putative tartrate transporter",2.94,4.67,1.21,0.26,-1.94,{"v":0.0457,"d":"4.57E-02"}]
["AKAUv1_780012","CDS","ttuB","putative tartrate transporter",2.58,3.94,1.21,0.31,-1.7,{"v":0.0369,"d":"3.69E-02"}]
["AKAUv1_300003","CDS","ttuB","putative tartrate transporter",4.52,6.75,2.3,0.34,-1.55,{"v":0.0242,"d":"2.42E-02"}]
["AKAUv1_3190063","CDS","-","putative transport protein (ABC superfamily, ATP_bind)",2.6,3.99,1.21,0.3,-1.72,{"v":0.0109,"d":"1.09E-02"}]
["AKAUv1_1250023","CDS","-","putative transport protein (MFS superfamily)",5.32,8.62,2.01,0.23,-2.1,{"v":0.00108,"d":"1.08E-03"}]
["AKAUv1_930025","CDS","ynfM","putative transporter; MFS type",2.32,3.43,1.21,0.35,-1.5,{"v":0.0773,"d":"7.73E-02"}]
["AKAUv1_2450104","CDS","potI","putrescine transporter subunit: membrane component of ABC superfamily",2.57,3.92,1.21,0.31,-1.69,{"v":0.0242,"d":"2.42E-02"}]
["AKAUv1_1080381","CDS","-","RND family efflux transporter MFP subunit",3.97,6.74,1.21,0.18,-2.47,{"v":0.00111,"d":"1.11E-03"}]
["AKAUv1_1080400","CDS","-","Spermidine/putrescine ABC transporter substrate-binding protein",2.9,4.59,1.21,0.26,-1.92,{"v":0.0039,"d":"3.90E-03"}]
["AKAUv1_160104","CDS","yebQ","Uncharacterized transporter YebQ",2.63,4.05,1.21,0.3,-1.74,{"v":0.0115,"d":"1.15E-02"}]