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["Transcriptional responses of the bacterium Burkholderia terrae BS001 to the fungal host Lyophyllum sp. strain Karsten under soil-mimicking conditions\n\nIrshad Ul Haq* Francisco Dini-Andreote and Jan Dirk van Elsas\nMicrobial Ecology, Groningen Institute of Evolutionary Life Sciences (GELIFES), Nijenborgh 7, 9747 AG, University of Groningen, The Netherlands.\n\n*Corresponding author: Irshad Ul Haq, Microbial Ecology, Groningen Institute of Evolutionary Life Sciences (GELIFES), Nijenborgh 7, 9747 AG, University of Groningen, The Netherlands.\nE‒mail address: i.u.haq@rug.nl\n"]
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[{"$nulls":9},"Microbial Ecology"]
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[null,null," Type VI 6 secretion system, peptidase and bacterioferritin encoding genes T1 (day 3)"]
[]
["Locus tag","Name","Product","baseMean","baseMeanA","baseMeanB","log2FoldChange","pval"]
[{"$nulls":9},"Key"]
["AKAUv1_650058","-","Type VI secretion-associated protein, ImpA family",175,138,212,0.62,{"v":0.00346,"d":"0.0035"},null,"baseMean = normalized average read counts"]
["AKAUv1_650059","-","putative secretion system protein (EvpA-like)",86,74,98,0.4,{"v":0.1,"d":"0.1000"},null,"baseMeanA = normalized average read counts for condtion A (Bacteria)"]
["AKAUv1_650060","-","putative secretion system protein (EvpB-like)",245,201,288,0.52,0.0154,null,"baseMeanB = normalized average read counts for condition B (Bacteria + Fungus)"]
["AKAUv1_650061","hcp","Protein hcp1",346,287,405,0.5,0.0134]
["AKAUv1_650062","-","Virulence protein SciE type",70,60,79,0.39,{"v":0.12,"d":"0.1200"}]
["AKAUv1_650064","-","Type VI secretion protein, VC_A0110 family",116,95,137,0.53,0.0229]
["AKAUv1_650065","-","protein of unknown function",21,16,25,0.62,0.0484]
["AKAUv1_650066","-","Type VI secretion protein",32,26,38,0.52,0.0742]
["AKAUv1_650067","-","putative ClpA/B-type chaperone (evpH-like)",151,125,177,0.5,0.0169]
["AKAUv1_650068","-","conserved protein of unknown function",22,16,27,0.74,0.0217]
["AKAUv1_650069","-","ImpA family type VI secretion-associated protein",119,93,145,0.63,{"v":0.00519,"d":"0.0052"}]
["AKAUv1_650070","-","Regulatory protein",87,71,104,0.56,0.0237]
["AKAUv1_650071","-","Type VI secretion protein",51,42,60,0.52,0.0449]
["AKAUv1_650072","-","conserved protein of unknown function",44,39,49,0.33,{"v":0.22,"d":"0.2200"}]
["AKAUv1_650073","-","conserved membrane protein of unknown function",139,120,158,0.4,0.0663]
["AKAUv1_650074","-","Type VI secretion-associated protein TagF",61,53,70,0.41,0.0968]
[]
["AKAUv1_790112","-","General secretion pathway protein D",46,35,57,0.71,0.0137]
["AKAUv1_2470010","-","Type IV pilus assembly PilZ",23,17,29,0.75,0.0311]
["AKAUv1_650054","-","conserved exported protein of unknown function",140,120,161,0.42,0.0424]
["AKAUv1_650057","-","protein of unknown function",166,132,200,0.6,0.00425]
[]
["AKAUv1_160051","-","Peptidase M12A astacin",23,21,26,0.31,0.37]
["AKAUv1_720101","-","Peptidase M22 glycoprotease",15,14,16,0.14,0.55]
["AKAUv1_550004","-","Peptidase M23",8.66,5.83,11,0.98,{"v":0.0628,"d":"6.28E-02"}]
["AKAUv1_520047","-","Peptidase M23B",15,14,17,0.31,0.22]
["AKAUv1_750037","-","Peptidase M24",51,43,58,0.42,0.11]
["AKAUv1_690018","pmbA","peptidase required for the maturation and secretion of the antibiotic peptide MccB17",63,44,82,0.89,{"v":0.0014,"d":"1.40E-03"}]
["AKAUv1_1970035","-","Peptidase S8/S53 subtilisin kexin sedolisin",89,70,109,0.64,{"v":0.0074,"d":"7.40E-03"}]
["AKAUv1_760031","-","Peptidase S8/S53 subtilisin kexin sedolisin",25,20,29,0.54,{"v":0.0914,"d":"9.14E-02"}]
["AKAUv1_1560012","-","Peptidase S10 serine carboxypeptidase",57,45,69,0.61,{"v":0.0135,"d":"1.35E-02"}]
["AKAUv1_580050","-","Peptidase S16, lon domain protein",29,26,33,0.35,0.32]
["AKAUv1_1560011","-","Peptidase S53 propeptide",35,31,39,0.33,0.2]
["AKAUv1_920062","-","Peptidase U61 LD-carboxypeptidase A",19,17,21,0.31,0.37]
[]
["AKAUv1_2440020","bfr","bacterioferritin, iron storage and detoxification protein",99,78,121,0.64,0.00714]
["AKAUv1_2280031","-","Bacterioferritin-associated ferredoxin",112,92,132,0.52,0.0238]
["AKAUv1_2280030","-","TonB family protein",19,15,24,0.74,0.0303]
[]
["AKAUv1_2840083","-","Lytic transglycosylase",3820,3150,4490,0.51,0.00555]