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["Table S1  Gene accession used in a phylogenetic tree"]
["DEF/AP3"]
["origin","gene name","accession"]
["Antirrhinum majus","AmDEF","P23706"]
["Arabidopsis thaliana ","AP3","P35632 "]
["Chrysanthemum x morifolium ","CDM115","AAO22985"]
["Dicentra eximia ","DeAP3-1","AAC42590"]
["Hieracium piloselloides","HPDEF1","AAD53325"]
["Hydrangea macrophylla ","HmAP3","BAG68949"]
[null,"HmTm6","BAG68950"]
["Lilium regale","LrDEF","BAB91550"]
["Meliosma dilleniifolia","MdTm6","BAC11907"]
["Oryza sativa","OsMADS16","Q944S9 "]
["Petunia x hybrida ","PhDEF","AAQ72510"]
[null,"PhTm6","AAS46017"]
["Papaver nudicaule","PnAP3-2","AAC42589"]
["Sanguinaria canadensis","ScAP3","AAD31696"]
["Torenia fournieri","TfDEF","AB359951"]
["Zea mays","SILKY1","AAF59838 "]
["GLO/PI"]
["Antirrhinum majus","AmGLO","Q03378 "]
["Arabidopsis thaliana ","PI","P48007"]
["Chrysanthemum x morifolium ","CDM86","AAO22986"]
["Hydrangea macrophylla","HmPI","BAG68951"]
["Lilium regale","LrGLO","BAB91551 "]
["Meliosma dilleniifolia","MdPI","AAR87673"]
["Oryza sativa","OsMADS2","L37526"]
["Petunia x hybrida ","PhGLO1","Q03488"]
[null,"PhGLO2","Q07474"]
["Sanguinaria canadensis","ScPI","AAD31699"]
["Torenia fournieri","TfGLO","AB359952"]
["Zea mays","ZmMADS29","NP_001105137"]

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["Table S2  Primer sequences used for isolation of cDNAs used in this study"]
["gene name","direction","primer sequence","PCR method"]
["TfXEG1","forward","  5'-CCHACYKCYRATTTCCACAC-3'","degenerate"]
[null,"reverse","  5'-RTYRTARAYCATRTAATTC-3'*","degenerate"]
[null,"forward","  5'-AATCATTATCAAATTGCTTTCTTC-3'","3' race 1st"]
[null,"forward","  5'-CACTCTGTGGGAAGCGGACGACTG-3'","3' race 2nd"]
["TfXEG2","forward","  5'-TAYKCSAGTY TWTGGAACGC-3'**","degenerate"]
[null,"forward","  5'-CGCCAGCTTCAATGCTTTGGCATGC-3'","3' race 1st"]
[null,"forward","  5'-GTGTTCTTCAAATGGTAATTCTTGG-3'","3' race 2nd"]
["TfXEG3","forward","  5'-TTGGGCCAAAGCGCCCTTCGTGG-3'","3' race 1st"]
[null,"forward","  5'-ACGTCGTCGTCTAATACTCCGTG-3'","3' race 2nd"]
["TfLKR","forward","  5'-GCMTATAAATTYAGYTGGAAYCC-3'","degenerate"]
[null,"reverse","  5'-TYCCCGAAYTCCARWARMGTCGC-3'","degenerate"]
[null,"forward","  5'-CTATCATGTTCTTGGGCTTCCTGG-3'","3' race 1st"]
[null,"forward","  5'-CCAACCTTGTGAAAACCACCGAGCG-3'","3' race 2nd"]
["TfCAB1","forward","  5'-AARTACYTRGGYCCATTCTC-3'***","degenerate"]
[null,"reverse","  5'-CRTTCTTRAKCTCCTTCACCTTC-3'***","degenerate"]
[null,"forward","  5'-CCACTCTAGATGGGCCATGCTTGGAG-3'****","3' race 1st"]
[null,"forward","  5'-AGGTGGTCTTGACTACTTGGGAAACC-3'****","3' race 2nd"]
["TfCAB3","forward","  5'-GACTACGGTTGGGACACAGCTGGC-3'","3' race 1st"]
[null,"forward","  5'-CCCAGAGACCTTCGCCAAGAACCG-3'","3' race 2nd"]
["TfANS","forward","  5'-GAGTACG TAAGGACCGA AGAAGAGCTC-3'","degenerate"]
[null,"reverse","  5'-CAGTGGCTTGAGCACGATCTTCTCC-3'","degenerate"]
[null,"forward","  5'-CAAGATCCTCTCGGTCCTCTCGCTCG-3'","3' race 1st"]
[null,"forward","  5'-CTAGCCCTGGGCGTCGAGGCCCACAC-3'","3' race 2nd"]
["TfCHI","forward","  5'-AGGTGCGAGAGGACTGGAGATC-3'","degenerate"]
[null,"reverse","  5'-ACAGTTGTTTGTTCTCGATGAC-3'","degenerate"]
[null,"forward","  5'-TGCATTGCTCACTGGAAAGCGATCGG-3'","3' race 1st"]
[null,"forward","  5'-TTCGATACAGAATCATCTGAAGCAAC-3'","3' race 2nd"]
["TfCHS1*****","forward","  5'-CGAACAGCACCCCCCAGTCC-3'","degenerate"]
[null,"reverse","  5'-GCCGGCGACAATCTTGGCCATC-3'","degenerate"]
[null,"forward","  5'-CTGAAAGACGTGCCGGGCCTCATCTC-3'","3' race 1st"]
[null,"forward","  5'-GGACCAGGT GGAGGAGAAG CTG-3'","3' race 2nd"]
["TfDFR","forward","  5'-ATGGCACGAGCAGGACCAC-3'","degenerate"]
[null,"reverse","  5'-ACATGTCCTCCAATGTATACTTG-3'","degenerate"]
[null,"forward","  5'-CAGTTTGTGCATGTTGATGATCTCTG-3'","3' race 1st"]
[null,"forward","  5'-GCTCATATATTCTTGTCTGAGCATCC-3'","3' race 2nd"]
["TfF3H","forward","  5'-ATGGCACGAGCAGGACCAC-3'","degenerate"]
[null,"reverse","  5'-GTCTTTAGCCATCTTCCTCTTGTAC-3'","degenerate"]
[null,"forward","  5'-GGTCCAGCCCGTTGAGGGCGCATTCG-3'","3' race 1st"]
[null,"forward","  5'-ATTACTTGAGCAATGGAAGGTTCAAG-3'","3' race 2nd"]
["TfF3'H1******","forward","  5'-GGACCCCTCATGCACCTAAAGATGGG-3'","degenerate"]
[null,"reverse","  5'-GTAGCGTAAGCCCATATGCTTCTTCC-3'","degenerate"]
[null,"forward","  5'-GTAAGAACAGGCTCGTGTCCGAGACC-3'","3' race 1st"]
[null,"forward","  5'-CCAAGGGCTCGACCCTTCTGGTGAAC-3'","3' race 2nd"]
["TfF3'5'H","forward","  5'-ATGACAGTAGCTACTACACTTGTCG-3'","degenerate"]
[null,"reverse","  5'-CTATGGAAGATAACAATGTAAAGG-3'","degenerate"]
[null,"forward","  5'-GCCATGGCCAACATGATCGGGCAAG-3'","3' race 1st"]
[null,"forward","  5'-AGGACATGGTGGTGGAGCTCATGAC-3'","3' race 2nd"]
["Tf3GT","forward","  5'-WTSAAYTCSTTYGAAGAAYTRGAYCC-3'","degenerate"]
[null,"reverse","  5'-TCMAGMAYCGAGTTCCAWCCRCAATG-3'","degenerate"]
[null,"forward","  5'-CAGTGCATATCGTTCCTGGAAAGCC-3'","3' race 1st"]
[null,"forward","  5'-GGGCTCAGAGCTCATTACCAGACGG-3'","3' race 2nd"]
["*Primer also used for isolation of TfXEG2 and TfXEG3 genes as a degenerate primer. "]
["**Primer also used for isolation of TfXEG3 gene as a degenerate primer. "]
["***Primer also used for isolation of TfCAB2 and TfCAB3 genes as degenerate primers. "]
["****Primer also used for isolation of TfCAB2 gene as 3' race primers. "]
["*****Primer set also used for isolation of TfCHS2 gene. "]
["******Primer set also used for isolation of TfF3'H2 gene. "]

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["Table S3  Primer sequences used for RT-PCR analysis"]
["gene name","gene accession","direction","primer sequence"]
["TfGLO","AB548150","forward","  5'-CTTGAAAACGGAATGTCAGC-3'"]
[null,null,"reverse","  5'-TAGTAGTTCTAAACATGGATGG-3'"]
["TfDEF","AB359951","forward","  5'-ATGGCTCGTGGTAAGATACAGATC-3'"]
[null,null,"reverse","  5'-AAATCACACAAACATACCAACC-3'"]
["TfXEG1","AB548361","forward","  5'-CACTCTGTGGGAAGCGGACGACTG-3'"]
[null,null,"reverse","  5'-TAACCTGACCCTTATAATGGACGC-3'"]
["TfXEG2","AB548362","forward","  5'-GTGTTCTTCAAATGGTAATTCTTGG-3'"]
[null,null,"reverse","  5'-AGTTGACACCCACCCAGATAACGC-3'"]
["TfXEG3","AB548363","forward","  5'-GGGTTCAACAGAAGCATATGGTC-3'"]
[null,null,"reverse","  5'-TCTCCGAAAAAGAGACATAAACC-3'"]
["TfLKR","AB548357 ","forward","  5'-CCCGAATAACCAACCTTGTG-3'"]
[null,null,"reverse","  5'-TTTTAAACGATGGGGCTTAAG-3'"]
["TfCAB1","AB548358","forward","  5'-AGGTGGTCTTGACTACTTGGGAAACC-3'"]
[null,null,"reverse","  5'-TCCAGGTACGAAGTTAGTTGCG-3'"]
["TfCAB2","AB548359","forward","  5'-AGGTGGTCTTGACTACTTGGGAAACC-3'"]
[null,null,"reverse","  5'-TATATTTCGAAATAATTCACAG-3'"]
["TfCAB3","AB548360","forward","  5'-GCCCTCGGGTGCGTCTTCCCCG-3'"]
[null,null,"reverse","  5'-GAAAGATAACATTTTATATCTCC-3'"]
["TfANS","AB548583","forward","  5'-CGCCCTCACGTTCATCCTCCAC-3'"]
[null,null,"reverse","  5'-CTCCACCCATCACTCAACACTC-3'"]
["TfCHI","AB548584","forward","  5'-TTCCTCGAAGTGTTCAAGAACG-3'"]
[null,null,"reverse","  5'-TACAAATCCACGATCATTGACC-3'"]
["TfCHS1","AB548585 ","forward","  5'-GGACCAGGTGGAGGAGAAGCTG-3'"]
[null,null,"reverse","  5'-ACAAACATGCAACATAAATTAATC-3'"]
["TfCHS2","AB548586 ","forward","  5'-GGACCAGGTGGAGGAGAAGCTG-3'"]
[null,null,"reverse","  5'-CAACACCATAAATAGTAATTAAG-3'"]
["TfDFR","AB548587","forward","  5'-TTGCTCCTCTCATGACGCAACC-3'"]
[null,null,"reverse","  5'-GTATATTTCTTCAAATATATGCG-3'"]
["TfF3H","AB548588","forward","  5'-TTACTTGAGCAATGGAAGGTTC-3'"]
[null,null,"reverse","  5'-TAATATGGCCACTAGGTAACTC-3'"]
["TfF3'H1","AB057672","forward","  5'-GCGGGTCGTAGGATCTGCGCC-3'"]
[null,null,"reverse","  5'-CAGCAGTACAAACTAGATTTATC-3'"]
["TfF3'H2","AB548589","forward","  5'-GTCAAGGGGAACGATTTCGAAG-3'"]
[null,null,"reverse","  5'-CAGCAGTACAAACTAGATTTATC-3'"]
["TfF3'5'H","AB548590","forward","  5'-GAGAATGTTGGAGCAGCATGCG-3'"]
[null,null,"reverse","  5'-GAGATAATTTATTTGATAGATTGG-3'"]
["Tf3GT","AB548591","forward","  5'-TCGAATGGTGCAAGATGTTTGG-3'"]
[null,null,"reverse","  5'-GAAGACGTAGACATTTGACTCG-3'"]
["TfACT3","AB330989","forward","  5'-AAATACAGTGTTTGGATCGGAGGTTC-3'"]
[null,null,"reverse","  5'-GAATAGCACACAGAGAATAGCAAACC-3'"]
["transgene*",null,"reverse","  5'-TTGAACGATCGGGGAAATTC-3'"]
["*This primer was used with a forward primer of TfGLO or TfDEF. "]

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["Table S4 Primer sequences used for plasmid constructions and in vitro translations"]
["primer name","direction","primer sequence"]
["Torenia GLO EcoIF","forward","  5'-AAAGAATTCATGGGTCGGGGCAAGATTG-3'"]
["Torenia GLO His XhoR","reverse","  5'-AACTCGAGGAAACGTTCCTGAAGATTC-3'"]
["Torenia GLO 1F","forward","  5'-ATGGGTCGGGGCAAGATTGAGATC-3'"]
["GLO TnT F","forward","  5'-GGATCCTAATACGACTCACTATAGGGAGCCACCATGATGGGTCGGGGCAAGATTGAGATC-3'"]
["GLO Flag R","reverse","  5'-CTATTTGTCGTCGTCGTCTTTATAGTCGAAACGTTCCTGAAGATTC-3'"]
["Torenia GLO over R","reverse","  5'-TCAGAAACGTTCCTGAAGATTCGG-3'"]
["Torenia GLO SRDX R","reverse","  5'-GAAACGTTCCTGAAGATTCGGTTG-3'"]
["Torenia DEF EcoIF","forward","  5'-AAAGAATTCATGGCTCGTGGTAAGATACAG-3'"]
["Torenia DEF His XhoR","reverse","  5'-AACTCGAGCTCCAGCAAAGCAAATGTG-3'"]
["Torenia DEF 1F","forward","  5'-ATGGCTCGTGGTAAGATACAGATC-3'"]
["DEF TnT F","forward","  5'-GGATCCTAATACGACTCACTATAGGGAGCCACCATGATGGCTCGTGGTAAGATACAGATC-3'"]
["DEF Flag R","reverse","  5'-CTATTTGTCGTCGTCGTCTTTATAGTCCTCCAGCAAAGCAAATGTG-3'"]
["Torenia DEF over R","reverse","  5'-CTACTCCAGCAAAGCAAATGTGG-3'"]
["Torenia DEF SRDX R","reverse","  5'-CTCCAGCAAAGCAAATGTGGTAAG-3'"]
["M13 new R","reverse","  5'-ATTACGCCAGCTGGCGAAAG-3'"]

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["Table S5  Coincidence with transgene expressions and transgenic phenotypes "]
["Sepals of 35S::TfGLO plants",null,null,"Petals of 35S::TfGLO-SRDX plants",null,null,"Petals of 35S::TfDEF-SRDX plants"]
["plant number","transgene expression","phenotype","plant number","transgene expression","phenotype","plant number","transgene expression","phenotype"]
[1,"+","+",1,"+","+",1,"+","+"]
[2,"+","-",3,"+","+",2,"+","-"]
[3,"+","+",4,"+","-",3,"+","+"]
[4,"+","-",5,"+","+",4,"+","+"]
[5,"+","+",6,"+","+",5,"+","+"]
[6,"+","+",7,"+","+",6,"+","+"]
[7,"+","+",8,"+","+",7,"not detected"]
[9,"not detected",null,10,"not detected",null,8,"+","+"]
[10,"not detected",null,11,"+","+",9,"+","+"]
[12,"+","+",12,"not detected",null,10,"+","+"]
[13,"+","+",13,"+","+",11,"+","-"]
[14,"+","+",14,"+","+",13,"+","+"]
[15,"+","+",17,"+","+",14,"+","-"]
["total (+)",11,9,18,"+","+",15,"+","-"]
[{"$nulls":3},19,"+","+",16,"+","+"]
[{"$nulls":3},20,"+","-",17,"+","+"]
[{"$nulls":3},22,"+","-",18,"not detected"]
[{"$nulls":3},23,"+","-",19,"+","-"]
[{"$nulls":3},"total  (+)",16,12,20,"+","+"]
[{"$nulls":6},21,"not detected"]
[{"$nulls":6},22,"+","+"]
[{"$nulls":6},24,"+","+"]
[{"$nulls":6},"total  (+)",19,13]