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["Supplementary Table 11. CNVs and ROH Overlapping with Regions Known to have a Position Effect"]
["GENE","Gene Name","Chrom Locus","n Px PE gene","CNV ROH","CNV","LOSS","GAIN","ROH","CNV Size Range (Kb, Mb)","CNV Markers","ROH Size Range (Mb)","ROH Markers","D#","Expression in Urogenital and Reproductive Structures (UniProtKB, Bgee, GeneCards)"]
["LCT","lactase","2q21.3",20,20,0,0,0,20,"none "," none","1-3.1","138-397","D1, D3, D5, D9, D10, D11, D16, D19, D21, D22, D23, D24, D26, D27, D33, D37, D41, D44, D50, D52","breast, uterine tube"]
["SHH","sonic hedgehog","7q36.3",9,12,11,8,3,1,"1-51.3","2-25",1,328,"D1, D9, D14, D15, D16, D21, D22, D23, D44","kidney, adrenal gland, epididymis, ovary, prostate, seminal vesicle, testis, urethra, uterine tube, vagina"]
[" FRG1 (D4Z4, FSHD)","FSHD Region Gene 1","4q35.2",9,9,9,0,9,0,"46-182","2-44","none","none","D1, D4, D5, D9, D10, D11, D12, D16, D21","adrenal gland, testis, kidney, ovary, prostate, testis, uterus"]
["RET","proto-oncogene tyrosine-protein kinase receptor Ret","10q11.21",9,9,9,0,9,0,"1.5-6.3","8-37","none ","none ","D9, D12, D14, D15, D16, D17, D18, D19, D21 ","adrenal gland, breast, kidney, ovary, prostate, seminal vesicle, testis, uterine tube, vagina"]
["POU3F4","POU domain, class 3, transcription factor 4","Xq21.1",8,8,6,5,1,2,"4.9-43.7 Mb","2605-35048","1.5-1.9","197-278","D3, D10, D15, D22, D27, D33, D39, D51","kidney"]
["SHOX","Short Stature Homeobox","Xp22.33",8,8,8,6,2,0,"41.5-41.7, 950.9 Kb-49 Mb","10-60166","none","none","D3, D10, D12, D22, D27, D33, D39, D46","kidney, breast, ovary, testis, vagina"]
["FOXL2","Forkhead Box L2","3q22.3",7,7,5,0,5,2,"3.4-3.5","8-10","1.1-1.5","186-323","D9, D33, D40, D41, D42, D44, D48","developing gonad (before sex determination), ovary, cervix, fallopian tube, uterus"]
["SOX3","SRY (sex determining region Y)-box 3","Xq27.1",7,9,9,8,1,0,"6.9, 870 Kb-40 Mb","8-27102","none ","none ","D3, D10, D22, D27, D33, D39, D40","female reproductive system, ovary,uterine tube,  testis"]
["NR0B1","Nuclear receptor subfamily 0 group B member 1","Xp21.2",7,7,7,6,1,0,"1.6, 13.7-52 Mb","8-60,166","none","none","D3, D10, D22, D27, D29, D33, D39","adrenal gland, testis, breast, epididymis, kidney, ovary, prostate, testis, uterine cervix, vagina"]
["PLP1","myelin proteolipid protein 1","Xq22.2",7,7,7,6,1,0,"3.3, 7.3-43.7 Mb","3-35048","none","none","D3, D10, D15, D22, D27, D33, D39","ubiquitous, kidney, adrenal gland, breast, epididymis, female reproductive system, penis, prostate, seminal vesicle, testis"]
["PAX6","paired box 6","11p13",6,6,0,0,0,6,"none ","none","1.1-1.3","214-265","D9, D11, D18, D26, D28, D32","kidney, ovary, prostate, testis, uterine tube, vagina"]
["FOXP2","Forkhead Box P2","7q31.1",6,6,2,1,1,4,"5.6-18.3","10-16","1.1-2.3","227-538","D2, D15, D23, D27, D41, D45","ubiquitous, adrenal cortex, breast, epididymis, female reproductive system, kidney, penis, prostate, seminal vesicle, testis"]
["RUNX2","runt-related transcription factor 2","6p21.1",4,5,0,0,0,5,"none ","none ","1-2","269-649","D11, D16, D25, D49","ubiquitous, adrenal cortex, breast, epididymis, female reproductive system, kidney, penis, prostate, seminal vesicle, testis"]
["SOX9","SRY (sex determining region Y)-box 9","17q24.3",4,4,4,4,0,0,"1.6-6","8-17","none ","none ","D25, D38, D46, D52","ubiquitous, kidney, adrenal gland, breast, epididymis, female reproductive system, penis, prostate, seminal vesicle, testis"]
["TWIST1","twist family bHLH transcription factor 1","7p21.1",3,4,2,1,1,2,"5.7-16.2","8-30",1.1,"366-410","D12, D13, D23","ubiquitous, kidney, adrenal gland, breast, epididymis, female reproductive system, penis, prostate, seminal vesicle, testis"]
["HOXD@","Homeobox D Cluster","2q31.1",3,3,2,2,0,1,"1-3.4","2-6","1.3-1.4","358-403","D10, D19, D22","ND"]
["MAF","v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog","16q23.2",3,4,4,2,2,0,"1.9-7-8","8-16","none","none","D2, D9, D13","ubiquitous, kidney, adrenal gland, breast, epididymis, female reproductive system, penis, prostate, seminal vesicle, testis"]
["SIX3","SIX homeobox 3","2p21",3,3,3,2,1,0,"3.2-14.1","5-9","none ","none ","D21, D42, D52","breast, prostate, testis, uterine tube, vagina"]
["REEP3","receptor expression-enhancing protein 3","10q21.3",2,2,0,0,0,2,"none ","none ","1-1.1 ","260-270","D18, D25","ubiquitous, kidney, adrenal gland, breast, epididymis, female reproductive system, penis, prostate, seminal vesicle, testis"]
["ST6GAL2","beta-galactoside alpha-2,6-sialyltransferase 2 ","2q12.2-q12.3",1,1,0,0,0,1,"none ","none ",1.1,"271","D50","breast, epididymis, kidney, ovary, penis, prostate, seminal vesicle, urethra, uterine cervix, vagina, vulva"]
["FOXC1","Forkhead Box C1","6p25.3",1,1,1,1,0,0,4.6,"13","none","none","D7","ubiquitous, kidney, adrenal gland, breast, epididymis, female reproductive system, penis, prostate, seminal vesicle, testis"]
["SHFM1","Split Hand/Foot Malformation (Ectrodactyly) Type 1","7q21.3",1,1,1,1,0,0,12.6,"10","none ","none ","D21","kidney, adrenal gland, ovary, uterus, testis, prostate"]