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["Supplementary Table 23. ChAS OligoProbe/Marker Coverage"]
["DSD Genes with CNV and ROH","ChAS probe coverage (S - SNP; C - CN)"]
["BBS9 (RP9)","several S,C"]
["FGF7 (FAM2278)","several S,C"]
["FGD1 (TSR2)","several S,C"]
["CAMK1D","several S,C"]
["NOTCH2","several S,C"]
["POR","several S,C"]
["SOS1","several S,C"]
["CREBBP","several S,C"]
["GATA4","several S,C"]
["HSD17B3","several S,C"]
["WNT2","several S,C"]
["HHAT","several S,C"]
["FRG1BP","several S,C"]
["ARX","several S,C"]
["GNRH1","several S,C"]
["MTHFR","several S,C"]
["NR5A1","several S,C"]
["DMD","several S,C"]
["WWOX","several S,C"]
["NOTCH3","several S,C"]
["TP63","several S,C"]
["ESR2","several S,C"]
["SRD5A2","several S,C"]
["AXIN1","several S,C"]
["KRAS","several S,C"]
["TGFB1","several S,C"]
["EP300","several S,C"]
["CTNNB1","several S,C"]
["PTPN11","several S,C"]
["PDGFRA","several S,C"]
["MOV10L1","several S,C"]
["FRAS1 ","several S,C"]
["BNC2","several S,C"]
["NLGN4X","several S,C"]
["NOTCH1","several S,C"]
["PBX1","several S,C"]
["DHRSX","several S,C"]
["PCDH17","several S,C"]
["AHRR","several S,C"]
["PIP5K1B","several S,C"]
["OCA2","several S,C"]
["SOX9","several S,C"]
["CXCL12","several S,C"]
["SHOX","several S,C"]
["GFRA1","several S,C"]
["FLNA","several S,C"]
["AR","several S,C"]
["FAM167A-AS1 (C8orf12)","several S,C"]
["RAF1","several S,C"]
["INSR","several S,C"]
["PTCH1","several S,C"]
["SNRPN","several S,C"]
["SUPT3H (RUNX2)","several S,C"]
["KANK1 ","several S,C"]
["CTNNA3","several S,C"]
["NR5A2","several S,C"]
["ESR1","several S,C"]
["ATRX","several S,C"]
["GRIP1 ","several S,C"]
["CNTNAP3","several S,C"]
["VAMP7","several S,C"]
["FGFR2","several S,C"]
["FLT1","several S,C"]
["ROCK2","several S,C"]
["CHD7","several S,C"]
["NR0B1","several S,C"]
["PCSK1","several S,C"]
["ANOS1 (KAL1)","several S,C"]
["Imprinted Genes","ChAS probe coverage (S - SNP; C - CN)"]
["ABCA1 ","several S,C"]
["ANKRD11","several S,C"]
["ATP10A","several S,C"]
["BLCAP","few S,C (flanking+)"]
["CPA4","several S,C"]
["DLGAP2 ","several S,C"]
["FAM50B","none (flanking+)"]
["GRB10","several S,C"]
["H19","none (flanking+)"]
["IGF2","several S,C"]
["IGF2AS","none (flanking+)"]
["INPP5F ","several S,C"]
["INS","none (flanking+)"]
["KCNK9","several S,C"]
["KCNQ1","several S,C"]
["KLF14","1 S (flanking+)"]
["MEST","several S,C"]
["MESTIT1","few S,C (flanking+)"]
["NDN","few S,C (flanking+)"]
["NNAT","none (flanking+)"]
["PEG10","several S,C"]
["PPP1R9A","several S,C"]
["SGCE","several S,C"]
["SNORD107","none (flanking+)"]
["SNORD108","none (flanking+)"]
["SNORD109","none (flanking+)"]
["SNORD109B","none (flanking+)"]
["SNORD115","none (flanking+)"]
["SNORD64","none (flanking+)"]
["SNRPN","several S,C"]
["SNURF","several S,C"]
["TCEB3C ","none (segdup+; flanking+)"]
["TP73","several S,C"]
["WT1","several S,C"]
["ROH only ","ChAS probe coverage (S - SNP; C - CN)"]
["ALG12","several S,C"]
["AMHR2","several S,C"]
["APOA1","none (flanking+)"]
["ARL6","several S,C"]
["BBS1","several S,C"]
["BBS12","several S,C"]
["BBS4","several S,C"]
["BBS5","several S,C"]
["CALCA","several S,C"]
["COPS2","several S,C"]
["CYP11A1","several S,C"]
["CYP17A1","several S,C"]
["CYP19A1","several S,C"]
["CYP21A2","none (segdup+; flanking+)"]
["CYP26B1","several S,C"]
["DHCR7","several S,C"]
["DHH","1 S (flanking+)"]
["EMX2","several S,C"]
["FGF10","several S,C"]
["FGF2","several S,C"]
["FGF8","none (flanking+)"]
["FGFR1","several S,C"]
["FOXL2","none (flanking+)"]
["FRAT1","none (flanking+)"]
["FREM2","several S,C"]
["FZD4","several S,C"]
["GATA6","several S,C"]
["GDF9","none (flanking+)"]
["GHR","several S,C"]
["GNRHR","several S,C"]
["HNF1B","several S,C"]
["HSD17B4","several S,C"]
["HSD3B1","several S,C"]
["HSD3B2","several S,C"]
["INSRR","none (flanking+)"]
["KISS1","several S,C"]
["LEPR","several S,C"]
["LHX3","none (flanking+)"]
["MAMLD1","several S,C"]
["MAPK1","several S,C"]
["MAPK11","few S,C (flanking+)"]
["MAPK14","several S,C"]
["MAPK3","few S,C (flanking+)"]
["NCOR1","several S,C"]
["NOTCH4","several S"]
["PAX6","several S,C"]
["PROP1","none (flanking+)"]
["PTGDS","none (flanking+)"]
["PTGS2","several S,C"]
["RHOA ","several S,C"]
["SIM1","several S,C"]
["SOX2","several S,C"]
["SOX3","none (flanking+)"]
["SOX8","few S,C (flanking+)"]
["STAR","several S,C"]
["WT1","several S,C"]
["ROH Genes (Mizuno et al 2013)","ChAS probe coverage (S - SNP; C - CN)"]
["SEMA3D","several S,C"]
["PPP1R3A","several S,C"]
["GRIA1","several S,C"]
["INPP4B","several S,C"]
["GPC5","several S,C"]
["HEPACAM2","several S,C"]
["SLITRK6","several S,C"]
["SOCS6","several S,C"]
["USP38","several S,C"]
["ZWINT","none (flanking+)"]
["Genes with NO  CNV or ROH","ChAS probe coverage (S - SNP; C - CN)"]
["ACACB","several, S,C"]
["ACBD7 ","several, S,C"]
["ADCY2 ","several, S,C"]
["AKR1C2","several, S,C"]
["AKR1C4 ","several, S,C"]
["ALDH1A1 ","several, S,C"]
["ALDH1A2","several, S,C"]
["AMELY","several, S,C"]
["AMH ","none (flanking+)"]
["AMHR2 ","several, S,C"]
["ASIC2 aka ACCN1","several, S,C"]
["ATF3 ","several, S,C"]
["BBS10 ","several, S,C"]
["BBS2 ","several, S,C"]
["BBS7 ","several, S,C"]
["BLK ","several, S,C"]
["BMP2","several, S,C"]
["BMP4 ","several, S,C"]
["BMP7 ","several, S,C"]
["BMP8A","several, S,C"]
["BMP8B","several, S,C"]
["C2orf80","several, S,C"]
["C8orf12 ","several, S,C"]
["CBLN4","several, S,C"]
["CBX2 ","several, S,C"]
["CDC42 ","several, S,C"]
["CDKN1C ","several, S,C"]
["CFTR ","several, S,C"]
["CLCN4","several, S,C"]
["CTTNBP2 ","several, S,C"]
["CYP11B1 ","several, S,C"]
["CYP11B2 ","several, S,C"]
["DAZ1 ","several, S,C"]
["DDX3X","several, S,C"]
["DDX3Y","several, S,C"]
["DDX4 ","several, S,C"]
["DKK1 ","several, S,C"]
["DMRT1 ","several, S,C"]
["DMRT2","several, S,C"]
["DMRT3","several, S,C"]
["DNAJC15","several, S,C"]
["DOCK8 ","several, S,C"]
["DUSP6 ","several, S,C"]
["EFNB2 ","several, S,C"]
["EIF1AX","several, S,C"]
["EIF1AY","several, S,C"]
["FAM189A2 ","several, S,C"]
["FGF17","several, S,C"]
["FGF9 ","several, S,C"]
["FIGLA ","several, S,C"]
["FLRT3 ","several, S,C"]
["FOXA1 ","several, S,C"]
["FOXC1 ","several, S,C"]
["FST","several, S,C"]
["FTHL17 ","several, S,C"]
["FXN","several, S,C"]
["FZR1","several, S,C"]
["GADD45A ","several, S,C"]
["GADD45B","several, S,C"]
["GADD45G ","several, S,C"]
["GDF7 ","several, S,C"]
["GPR83 ","several, S,C"]
["GSK3B ","several, S,C"]
["HARS2 ","several, S,C"]
["HBA1 ","none (flanking+)"]
["HCCS ","several, S,C"]
["HCFC1","several, S,C"]
["HES1","several, S,C"]
["HESX1 ","several, S,C"]
["HFE ","several, S,C"]
["HGF ","several, S,C"]
["HOXA10 ","several, S,C"]
["HOXA10-HOXA9","several, S,C"]
["HOXA11 ","several, S,C"]
["HOXA13 ","several, S,C"]
["HOXD10","several, S,C"]
["HOXD13 ","several, S,C"]
["HOXD9","several, S,C"]
["HPGDS","several, S,C"]
["HSFX1","several, S,C"]
["HSFX2","several, S,C"]
["HUWE1","several, S,C"]
["IFITM1 ","several, S,C"]
["IFITM3","several, S,C"]
["IFT122 ","several, S,C"]
["IGF1","several, S,C"]
["IGFLR1 ","several, S,C"]
["IL17RD ","several, S,C"]
["INSL3 ","several, S,C"]
["IQCB1  (aka NPHP5)","several, S,C"]
["KAL1 ","several, S,C"]
["KDM3A","several, S,C"]
["KDM5C ","several, S,C"]
["KDM5D","several, S,C"]
["KDM6A","several, S,C"]
["KDR","several, S,C"]
["KISS1R ","several, S,C"]
["KITLG ","several, S,C"]
["LARS2 ","several, S,C"]
["LEP ","several, S,C"]
["LGR4 ","several, S,C"]
["LHCGR","several, S,C"]
["LHX1 (MRKH)","several, S,C"]
["LHX9","several, S,C"]
["LINC00208 ","several, S,C"]
["LRP5","several, S,C"]
["LRP6 ","several, S,C"]
["MAFB","several, S,C"]
["MAP3K1","several, S,C"]
["MAP3K4","several, S,C"]
["MECP2 ","several, S,C"]
["MEF2A ","several, S,C"]
["MID1 ","several, S,C"]
["MIR181A2 ","several, S,C"]
["MIR181A2HG ","several, S,C"]
["MIR181B2 ","none (flanking+)"]
["MKKS ","several, S,C"]
["MMP2 ","several, S,C"]
["MTM1 ","several, S,C"]
["NEIL2 ","several, S,C"]
["NGF","several, S,C"]
["NKX3-1 ","several, S,C"]
["NR6A1 ","several, S,C"]
["NRP1  ","several, S,C"]
["NTF3 (aka NT3)","several, S,C"]
["NXF2","several, S,C"]
["OLAH","several, S,C"]
["OTOGL","several, S,C"]
["OXCT2","several, S,C"]
["PAX2 (MRKH)","several, S,C"]
["PDGFA","several, S,C"]
["PDGFB ","several, S,C"]
["PERP ","several, S,C"]
["PITX2 ","several, S,C"]
["POR ","several, S,C"]
["PPP1R2","several, S,C"]
["PRDM14 ","several, S,C"]
["PRKACG ","several, S,C"]
["PROK2 ","several, S,C"]
["PROKR2 ","several, S,C"]
["PTGDR","several, S,C"]
["RAC1 ","several, S,C"]
["RBM15  (aka OTT) ","several, S,C"]
["RBM19 ","several, S,C"]
["RBMX","several, S,C"]
["RBMY1A1","several, S,C"]
["RBMY1B","several, S,C"]
["RNF17 ","several, S,C"]
["ROCK1 ","several, S,C"]
["ROR2 ","several, S,C"]
["ROS1 ","several, S,C"]
["RPS4X","several, S,C"]
["RSPO1","several, S,C"]
["RXFP2  (aka LGR8) ","several, S,C"]
["SALL1 ","several, S,C"]
["SHOX X ","none (flanking+)"]
["SHOX Y ","none (flanking+)"]
["SMAD4 ","several, S,C"]
["SOX10 ","several, S,C"]
["SPATA12 ","several, S,C"]
["SPATA16 ","several, S,C"]
["SPRY4 ","several, S,C"]
["SRD5A2","several, S,C"]
["SRY ","several, S,C"]
["STAR ","several, S,C"]
["STK31 ","several, S,C"]
["STRA8 ","several, S,C"]
["SYCP1 ","several, S,C"]
["SYCP2 ","several, S,C"]
["SYCP3","several, S,C"]
["TAC3","several, S,C"]
["TACR3 ","several, S,C"]
["TAF7L (aka TAF2Q)","several, S,C"]
["TBL1X","several, S,C"]
["TBX1 ","several, S,C"]
["TBX3 ","several, S,C"]
["TBX6 ","several, S,C"]
["TCF21","several, S,C"]
["TDRD1 ","several, S,C"]
["TEX11 ","several, S,C"]
["TEX12 ","several, S,C"]
["TEX13A ","none (flanking+)"]
["TEX13B","several, S,C"]
["TEX14 ","several, S,C"]
["TEX15 ","several, S,C"]
["TIMP1 ","none (flanking+)"]
["TJP2","several, S,C"]
["TKTL1","several, S,C"]
["TRIM32 ","several, S,C"]
["TSPY1","several, S,C"]
["TSPYL1","several, S,C"]
["TSPYL2","several, S,C"]
["TTC8 ","several, S,C"]
["TXNIP ","several, S,C"]
["UBA1 ","several, S,C"]
["UPK1B ","several, S,C"]
["UPK3A ","several, S,C"]
["UPK3B","several, S,C"]
["USP25 ","several, S,C"]
["USP26 ","several, S,C"]
["USP9X","several, S,C"]
["USP9Y ","several, S,C"]
["UTY","several, S,C"]
["VEGFA","several, S,C"]
["WNT4 ","several, S,C"]
["WNT5A ","several, S,C"]
["WT1-AS","several, S,C"]
["XDH ","several, S,C"]
["XIST","several, S,C"]
["ZEB2","several, S,C"]
["ZFPM2/FOG2 ","none (flanking+)"]
["ZFX","several, S,C"]
["ZFY","several, S,C"]
["ZNF214 ","several, S,C"]
["ZNF215 ","several, S,C"]