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["Supplementary Data 4 NanoString Gene Expression Levels."]
["Gene Type","Analysis ","Transcript Variant Name","RefSeq Accession Number","G01","G02","G03","G04","G05","G06","G07","G08","G09","G11","G12","G13","G14","G15","G16","G18","G20","G21","G22","G23","G26","G28","G29","G19","G10","G17","G24","G25","G27","G30"]
["Endogenous","High 5hmC ; Alternative Splicing ","ANXA2_v1","NM_001002858.2",1,1,6.67,1.12,267.05,1.2,7.44,2.36,10.46,10.47,7.04,1,17.26,9.95,40.56,1.19,36.61,1.04,4.2,84.27,7.47,6.18,1,"Did not pass QC","Insufficient RNA","Insufficient RNA","Insufficient RNA","Insufficient RNA","Insufficient RNA","Insufficient RNA"]
["Endogenous","High 5hmC ; Alternative Splicing ","ANXA2_v2","NM_001002857.1",107.35,30.99,609.82,139.34,852.29,169.51,861.91,317.05,982.81,1130.5,679.14,1248.67,576.33,1034.54,386.25,481.41,1267.11,1.04,389.81,340.36,864.09,490.35,209.66]
["Endogenous","High 5hmC ; Alternative Splicing ","ANXA2_v3","NM_004039.2",991.54,289.09,11423.9,2012,19362.05,2190,7022.23,1950.69,6083.07,12047.31,6711.77,6782.98,7493.42,9212.9,4862.15,5539.3,16463.35,135.71,3805.19,3272.12,8970.6,7619.4,2650.09]
["Endogenous","High 5hmC ; Alternative Splicing ","ANXA2_v4","NM_001136015.2",2.07,1,47.39,4.53,171.78,6.62,85.5,22.38,99.96,123.67,61.97,79.67,81.25,69.04,107.78,21.82,131.27,1.04,60.03,53.36,73.37,54.91,14.29]
["Endogenous","High 5hmC ; Alternative Splicing ","BCL6_v1","NM_001706.4",1,1,2.79,1.12,103.73,1,1.2,2.36,1,19.48,2.97,5.77,1,2.76,5.75,1.19,28.01,1.04,1,106.35,1,1.46,1]
["Endogenous","High 5hmC ; Alternative Splicing ","BCL6_v2","NM_001130845.1",34.41,87.04,201.58,96.65,2029.56,135.97,87.58,104.89,92.84,320.03,278.32,507.86,210.58,144.11,554.29,324.65,638.96,52.86,345.01,1108.62,444.91,179.88,72.71]
["Endogenous","High 5hmC ; Alternative Splicing ","CDK6_vv1","NM_001259.6",49.55,4920.59,167.64,29.25,103.73,78.48,155.23,2349.09,151.32,42.52,357.67,37.98,114.25,47.48,28.56,13.5,45.22,1.09,99.69,106.35,128.14,83.2,36.36]
["Endogenous","High 5hmC ; Alternative Splicing ","CDK6_vv2","NM_001145306.1",26.16,5095.27,110.42,14.64,144.56,32.97,91.74,1144.48,153.36,68.57,247.8,172.5,189.02,71.44,32.16,1.19,114.06,1.04,49.74,141.67,62.25,47.83,33.76]
["Endogenous","High 5hmC ; Alternative Splicing ","CHD2_v1","NM_001271.3",458.96,658.64,532.24,787.52,2036.37,612.65,370.67,491.49,376.61,501.36,573.34,884.9,593.17,518.65,794.35,705.86,733.61,696.98,545.52,1029.14,512.39,434.55,658.8]
["Endogenous","High 5hmC ; Alternative Splicing ","CHD2_v2","NM_001042572.2",154.83,162.64,229.7,273.02,437.18,182.68,186.45,312.33,186.92,203.82,268.82,263.45,175.55,181.64,413.85,210.64,311.97,161.6,224.55,344.77,170.22,111.5,197.97]
["Endogenous","Epigenetic Enzyme","DNMT1","NM_001379.2",1164.25,860.04,646.67,375.25,307.88,606.66,460.17,616.43,601.39,397.17,683.21,380.92,678.05,462.75,357.44,647.67,647.56,429.8,829.77,539.05,744.21,672.71,406.32]
["Endogenous","Epigenetic Enzyme ; High 5hmC ; Alternative Splicing ","DNMT3A_v2","NM_153759.2",24.09,20.56,7.64,1.16,42.49,21,15.77,29.45,6.9,1,44.34,1.89,7.83,7.55,9.35,1.63,8.6,6.26,22.57,207.9,16.2,5.39,6.5]
["Endogenous","Epigenetic Enzyme ; High 5hmC ; Alternative Splicing ","DNMT3A_v3","NM_022552.4",26.16,46.63,44.48,50.59,6.81,36.57,60.52,74.24,33.85,15.48,52.47,53.14,36.12,39.5,34.56,34.88,8.6,68.4,51.95,71.02,62.25,40.76,59.73]
["Endogenous","Epigenetic Enzyme ; High 5hmC ; Alternative Splicing ","DNMT3A_v4","NM_175630.1",1,1,18.3,16.89,1.66,17.4,16.81,5.88,17.07,1,17.21,1.89,9.17,8.35,11.75,2.81,8.6,13.51,4.2,22.46,6.68,9.32,22.73]
["Endogenous","Epigenetic Enzyme","DNMT3B","NM_175850.1",107.35,20.56,8.61,1.12,76.51,7.82,4.32,41.24,2.32,1,6.36,1,8.5,5.16,1.2,7.56,8.6,2.12,6.41,1,13.82,3.82,11.05]
["Endogenous","High 5hmC ; Alternative Splicing ; Glioblastoma Biology","EGFR_v1","NM_005228.3",238.77,995.61,270.42,13021.04,301.08,24864.55,26393.04,4699.37,21429.12,17622.42,599.79,3188.8,24244.23,621.67,1177.24,153.64,4855.35,870.95,145.23,1792.99,37418.42,1534.17,553]
["Endogenous","High 5hmC ; Alternative Splicing ; Glioblastoma Biology","EGFR_v2","NM_201282.1",1,1,1,1.12,6.81,1.2,63.64,2.36,1,1,1,1.89,1,1,1.2,1.19,8.6,1.04,1,4.42,1,1,1]
["Endogenous","High 5hmC ; Alternative Splicing ; Glioblastoma Biology ","EGFR_v3","NM_201283.1",1,12.74,1,169.67,83.32,379.1,697.47,182.68,331.86,242.89,8.39,55.04,657.17,12.34,32.16,1.19,346.39,9.37,1,84.27,197.21,14.82,4.56]
["Endogenous","High 5hmC ; Alternative Splicing ; Glioblastoma Biology","EGFR_v4","NM_201284.1",1,6.22,1,70.81,35.68,165.91,457.05,97.81,134.03,47.53,14.5,34.19,254.36,6.75,29.76,5.19,406.62,12.48,1,132.84,120.21,1,7.15]
["Endogenous","High 5hmC ; Alternative Splicing ; Glioblastoma Biology","EGFRvIII","EGFRvIII.1",1,1,1,1.12,6.81,30.58,257.22,126.1,863.3,1,1,1.89,1,1,1.2,1.19,871.29,1.04,1,4.42,1,1,1]
["Endogenous","Epigenetic Enzyme","IDH1","NM_005896.3",1083.74,1364.51,1977.09,1486.26,648.14,1967.23,2102.51,1436.79,2952.93,1215.65,2297.33,1210.78,1949.78,2174.93,1129.23,2191.52,1697.36,440.16,1816.93,1404.45,1777.87,2073.37,1266.96]
["Endogenous","Epigenetic Enzyme","IDH2","NM_002168.2",1392.69,1824.01,1399.15,2435.51,1614.45,2265.45,1303.2,1835.18,944.66,1419.02,1929.07,2531.36,1142.82,1033.74,1756.98,4209.21,2041.55,1957.24,1616.41,1497.17,2220.07,1763.68,1528.53]
["Endogenous","High 5hmC","LAG3","NM_002286.5",1,4.26,1,1.12,6.81,1,19.93,3.52,1,15.48,5,1.89,10.52,5.16,15.36,26.57,8.6,1.04,1.27,4.42,1,9.32,10.4]
["Endogenous","High 5hmC","MAML2","NM_032427.1",39.23,371.21,452.73,608.91,457.59,324.01,541.35,375.98,497.14,394.16,289.17,629.12,520.43,383.69,322.63,812.74,311.97,118.1,643.21,600.86,522.71,373.24,310.91]
["Endogenous","High 5hmC","MAP3K1","NM_005921.1",207.81,1675.41,380.97,633.62,124.15,810.27,614.21,352.41,732.09,219.85,756.45,288.08,513.02,287.06,238.61,461.22,380.81,143.99,740.9,433.08,351.23,525.72,316.75]
["Endogenous","Glioblastoma Biology","MGMT","NM_002412.3",11.71,22.51,167.64,215.73,6.81,157.53,206.23,175.61,152.34,20.48,42.3,96.72,47.57,182.44,281.82,42,217.32,307.61,95.28,53.36,71.78,244.34,346.61]
["Endogenous","High 5hmC","RAD51L1","NM_002877.4",90.84,186.76,279.15,125.86,416.76,198.25,188.53,373.62,182.85,142.71,310.19,113.77,114.25,158.48,267.42,304.46,174.29,83.93,155.51,221.14,181.34,152.37,155.14]
["Endogenous","High 5hmC ; Alternative Splicing ","RGMA_v1","NM_001166283.1",1,1.66,1,3.41,6.81,1.2,10.56,2.36,1.3,1,1,1.89,1.09,1.16,1.2,6.38,8.6,1.04,1,44.53,1,1,1]
["Endogenous","High 5hmC ; Alternative Splicing ","RGMA_v2","NM_001166286.1",1,45.98,72.61,106.76,6.81,7.82,23.05,15.31,47.58,9.46,27.38,87.24,7.83,61.86,28.56,18.25,8.6,2.12,8.61,9.21,34.46,25.83,20.13]
["Endogenous","High 5hmC ; Alternative Splicing ","RGMA_v3","NM_001166287.1",1,1,1,1,6.81,1.2,2.24,2.36,1,1,1,1.89,1,1,1.2,1.63,8.6,1.04,1,4.42,1,1,1]
["Endogenous","High 5hmC ; Alternative Splicing ","RGMA_v4","NM_020211.2",1,4.26,41.58,87.66,6.81,16.2,42.83,31.81,19.1,2.45,34.84,39.88,19.28,21.93,33.36,125.13,10.8,1,5.67,48.95,32.08,36.04,31.82]
["Endogenous","High 5hmC","RUNX1","NM_001754.4",33.04,74,416.85,58.46,627.72,207.83,329.04,88.38,410.18,921.12,332.57,468.07,441.62,484.31,280.62,527.72,578.72,12.48,569.03,291.79,568.76,252.2,121.39]
["Endogenous","High 5hmC","SOX2OT","NR_075091.1",321.34,1356.69,820.24,4305.92,355.52,6559.15,2733.22,2462.24,1816.32,1022.3,1257.65,1314.99,1858.18,2727.55,8723.5,1904.13,638.96,2113.61,3720.72,2592.16,1415.85,5208.73,2463.81]
["Endogenous","Epigenetic Enzyme","TET1","NM_030625.2",50.93,201.75,85.21,87.66,22.07,78.48,37.62,130.82,37.41,11.47,75.53,22.83,83.94,34.7,65.77,161.95,36.61,71.5,67.37,40.12,101.15,38.4,40.9]
["Endogenous","Epigenetic Enzyme","TET2","NM_001127208.2",312.4,511.34,627.27,639.24,825.07,661.76,488.28,550.43,548.5,345.07,861.57,1040.26,562.86,381.29,653.91,1133.39,621.75,469.15,654.23,759.81,579.08,469.13,408.27]
["Endogenous","Epigenetic Enzyme","TET3","NM_144993.1",369.51,247.37,116.24,252.8,62.9,243.76,222.88,309.98,236.25,247.9,302.05,316.5,158.04,142.51,187,296.15,122.66,276.54,248.05,172.58,322.65,190.89,275.21]
["Housekeeping","Housekeeping gene","ACTB","NM_001101.2",45688,33924.51,55639.24,28619.06,71631.71,43981.98,53045.07,40151.62,44406.5,80435.38,64142.17,66072.59,63558.26,55597.41,45246.07,66068.92,129996.26,37498.37,47271.58,36289.77,96932.34,57663.45,42100.7]
["Housekeeping","Housekeeping gene","GUSB","NM_000181.3",796.81,595.42,1820,1573.88,1525.99,821.05,1743.44,1267.06,1358.63,805.91,1027.06,1131.2,964.32,1314.04,764.34,621.54,1611.31,224.77,748.98,1408.86,737.07,930.52,596.49]
["Housekeeping","Housekeeping gene","PUM1","NM_001020658.1",849.79,1079.04,732.97,1098.7,736.6,988.72,747.43,1040.76,918.22,779.86,867.68,1182.36,813.44,796.56,859.16,938.63,965.94,1553.38,956.1,909.93,712.46,780.39,1088.47]
["Housekeeping","Housekeeping gene","SDHA","NM_004168.1",143.13,169.81,132.73,262.91,103.73,231.79,146.9,142.6,259.65,138.7,225.42,96.72,176.9,177.65,285.42,178.58,62.43,553.03,271.56,185.82,183.72,279.71,354.39]
["Housekeeping","Housekeeping gene","TBP","NM_001172085.1",914.47,1094.03,411.03,311.21,484.81,489.29,398.77,536.28,281.51,577.5,314.26,473.76,459.13,391.67,477.47,588.29,320.58,559.25,440.49,468.4,433,345.73,418]
["Negative","Control","NEG_A","ERCC_00096.1",1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1]
["Negative","Control","NEG_B","ERCC_00041.1",1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1]
["Negative","Control","NEG_C","ERCC_00019.1",1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1]
["Negative","Control","NEG_D","ERCC_00076.1",1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1]
["Negative","Control","NEG_E","ERCC_00098.1",1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1]
["Negative","Control","NEG_F","ERCC_00126.1",1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1]
["Negative","Control","NEG_G","ERCC_00144.1",1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1]
["Negative","Control","NEG_H","ERCC_00154.1",1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1]
["Positive","Control","POS_A","ERCC_00117.1",56773.02,55248.54,59965.88,65098.04,58053.24,62066.53,51792.15,51041.49,60040.56,60355.45,59078.37,63933.05,54749.62,48152.46,57533.79,51475.37,63269.25,51630.05,49246.72,50788.09,54061.41,48660.86,58380.02]
["Positive","Control","POS_B","ERCC_00112.1",13330.01,13050.54,14152.88,15224.04,13742.24,14639.53,11884.15,11943.49,14022.56,14332.45,13958.37,14842.05,12333.62,10887.46,13133.79,11619.37,14036.25,11328.05,11150.72,11333.09,12148.41,10828.86,12994.02]
["Positive","Control","POS_C","ERCC_00002.1",3303.01,3193.54,3455.87,3837.04,3275.24,3540.53,2896.15,2978.49,3431.56,3363.45,3221.37,3661.05,3081.62,2666.46,3432.79,2947.37,3411.26,2770.05,2741.72,2793.09,3050.41,2734.86,3177.02]
["Positive","Control","POS_D","ERCC_00092.1",814.01,812.54,892.87,1003.04,820.24,930.53,734.15,701.49,868.56,834.45,832.37,918.05,757.62,708.46,780.79,729.37,848.26,734.05,673.72,660.09,793.41,689.86,816.02]
["Positive","Control","POS_E","ERCC_00035.1",192.01,180.54,211.87,212.04,222.24,203.53,166.15,163.49,193.56,229.45,210.37,235.05,168.62,156.46,202.79,159.37,197.26,165.05,165.72,180.09,171.41,139.86,191.02]
["Positive","Control","POS_F","ERCC_00034.1",42.01,33.54,50.87,54.04,60.24,53.53,44.15,51.49,42.56,43.45,47.37,55.05,40.62,42.46,41.79,42.37,55.26,34.05,27.72,52.09,47.41,44.86,61.02]