Chemical compound	Metabolic activity	Microbial species or host cell-type	Reference # (Supplementary Data 2a)
[R,R]-2,3-Butanediol ([R,R]-Butanediol, [S,S]-2,3-Butanediol, [S,S]-Butanediol)	Production (export)	Bacillus subtilis	[122]
[R,R]-2,3-Butanediol ([R,R]-Butanediol, [S,S]-2,3-Butanediol, [S,S]-Butanediol)	Consumption (import)	Corynebacterium glutamicum	[5]
[R,R]-2,3-Butanediol ([R,R]-Butanediol, [S,S]-2,3-Butanediol, [S,S]-Butanediol)	Production (export)	Enterobacter cancerogenus	[339]
[R,R]-2,3-Butanediol ([R,R]-Butanediol, [S,S]-2,3-Butanediol, [S,S]-Butanediol)	Production (export)	Enterobacter cloacae	[339]
[R,R]-2,3-Butanediol ([R,R]-Butanediol, [S,S]-2,3-Butanediol, [S,S]-Butanediol)	Consumption (import) & production (export)	Klebsiella pneumoniae	[5,316,339]
[R,R]-2,3-Butanediol ([R,R]-Butanediol, [S,S]-2,3-Butanediol, [S,S]-Butanediol)	Production (export)	Klebsiella variicola	[316,339]
[R,R]-2,3-Butanediol ([R,R]-Butanediol, [S,S]-2,3-Butanediol, [S,S]-Butanediol)	Production (export)	Lactobacillus plantarum	[179]
[R,R]-2,3-Butanediol ([R,R]-Butanediol, [S,S]-2,3-Butanediol, [S,S]-Butanediol)	Consumption (import)	Pelobacter carbinolicus	[5,289,302]
[R,R]-2,3-Butanediol ([R,R]-Butanediol, [S,S]-2,3-Butanediol, [S,S]-Butanediol)	Consumption (import)	Pelobacter propionicus	[289]
[R,R]-2,3-Butanediol ([R,R]-Butanediol, [S,S]-2,3-Butanediol, [S,S]-Butanediol)	Consumption (import)	Pseudomonas aeruginosa	[344]
1,2-diacylglycerol (1-acylglycerol, Monoacylglycerol, Monoglyceride, Monoacylglycerol)	Consumption (import)	Colonocyte (host colon)	[336]
1,2-Ethanediol (Ethylene glycol)	Production (export)	Bacteroides thetaiotaomicron	[118]
1,2-Ethanediol (Ethylene glycol)	Consumption (import)	Pelobacter carbinolicus	[5,289,302,302]
1,2-Ethanediol (Ethylene glycol)	Consumption (import)	Pelobacter propionicus	[302]
1,2-Ethanediol (Ethylene glycol)	Consumption (import)	Pelotomaculum thermopropionicum	[135,302]
1,2-Ethanediol (Ethylene glycol)	Consumption (import)	Syntrophobacter fumaroxidans	[302]
1,2-Ethanediol (Ethylene glycol)	Consumption (import)	Syntrophobotulus glycolicus	[302]
1,2-Ethanediol (Ethylene glycol)	Consumption (import)	Syntrophomonas wolfei	[302]
1,2-Ethanediol (Ethylene glycol)	Consumption (import)	Syntrophothermus lipocalidus	[302]
1,2-Ethanediol (Ethylene glycol)	Consumption (import)	Syntrophus aciditrophicus	[302]
1,2-propanediol (Propene diol, Propylene glycol, [R]-1,2-propanediol, [R]-propane-1,2-diol, [S]-1,2-propanediol, [S]-propane-1,2-diol)	Production (export)	Bacteroides thetaiotaomicron	[118]
1,2-propanediol (Propene diol, Propylene glycol, [R]-1,2-propanediol, [R]-propane-1,2-diol, [S]-1,2-propanediol, [S]-propane-1,2-diol)	Production (export)	Bifidobacterium longum (Bifidobacterium infantis, Bifidobacterium suis)	[295]
1,2-propanediol (Propene diol, Propylene glycol, [R]-1,2-propanediol, [R]-propane-1,2-diol, [S]-1,2-propanediol, [S]-propane-1,2-diol)	Consumption (import)	Clostridium butyricum	[5]
1,2-propanediol (Propene diol, Propylene glycol, [R]-1,2-propanediol, [R]-propane-1,2-diol, [S]-1,2-propanediol, [S]-propane-1,2-diol)	Production (export)	Lactobacillus buchneri	[234]
1,2-propanediol (Propene diol, Propylene glycol, [R]-1,2-propanediol, [R]-propane-1,2-diol, [S]-1,2-propanediol, [S]-propane-1,2-diol)	Consumption (import)	Pelobacter carbinolicus	[5]
1,2-propanediol (Propene diol, Propylene glycol, [R]-1,2-propanediol, [R]-propane-1,2-diol, [S]-1,2-propanediol, [S]-propane-1,2-diol)	Consumption (import)	Salmonella enterica	[253]
1,3-Propanediol	Production (export)	Citrobacter koseri	[232]
1,3-Propanediol	Production (export)	Citrobacter rodentium	[232]
1,3-Propanediol	Production (export)	Citrobacter youngae	[232]
1,3-Propanediol	Production (export)	Ilyobacter polytropus	[232]
1,3-Propanediol	Production (export)	Klebsiella pneumoniae	[4,232]
1,3-Propanediol	Production (export)	Lactobacillus brevis	[234,401]
1,3-Propanediol	Production (export)	Lactobacillus buchneri	[234,401]
1,3-Propanediol	Consumption (import) & production (export)	Pelobacter carbinolicus	[5,232]
1,3-Propanediol	Consumption (import)	Pelotomaculum thermopropionicum	[135]
2-Aminobutyric acid (2-Aminobutyrate)	Production (export)	Clostridium botulinum	[86]
2-Aminobutyric acid (2-Aminobutyrate)	Production (export)	Clostridium sporogenes	[86]
2-Aminobutyric acid (2-Aminobutyrate)	Production (export)	Clostridium sticklandii	[86]
2-methylbutyrate (2-methylbutanoic acid)	Consumption (import)	Colonocyte (host colon)	[336]
2-methylbutyrate (2-methylbutanoic acid)	Consumption (import)	Desulfobulbus propionicus	[196]
2-methylbutyrate (2-methylbutanoic acid)	Consumption (import)	Fibrobacter succinogenes (Bacteroides succinogenes)	[198]
2-methylbutyrate (2-methylbutanoic acid)	Consumption (import)	Prevotella ruminicola (Bacteroides ruminicola)	[244]
2-methylbutyrate (2-methylbutanoic acid)	Consumption (import)	Ruminococcus albus	[121]
2-methylbutyrate (2-methylbutanoic acid)	Consumption (import)	Ruminococcus bromii	[121]
2-Oxobutyrate (Alpha-ketobutyrate, 2-Oxobutanoate)	Consumption (import)	Anaerotruncus colihominis	[170]
2-Oxobutyrate (Alpha-ketobutyrate, 2-Oxobutanoate)	Production (export)	Clostridium sporogenes	[306]
2-Oxobutyrate (Alpha-ketobutyrate, 2-Oxobutanoate)	Consumption (import)	Porphyromonas asaccharolytica	[306]
3-phenylpropionic acid (Phenylpropanoate, 3-phenylpropionate)	Consumption (import)	Colonocyte (host colon)	[132]
4-Aminobenzoate (para-amino, Benzoic acid)	Consumption (import)	Bifidobacterium longum (Bifidobacterium infantis, Bifidobacterium suis)	[265]
4-Aminobenzoate (para-amino, Benzoic acid)	Consumption (import)	Clostridium acetobutylicum	[242]
4-Aminobenzoate (para-amino, Benzoic acid)	Consumption (import)	Clostridium butyricum	[242]
4-Aminobenzoate (para-amino, Benzoic acid)	Consumption (import)	Lactobacillus casei	[242]
4-Aminobenzoate (para-amino, Benzoic acid)	Consumption (import)	Lactobacillus plantarum	[265]
4-Aminobenzoate (para-amino, Benzoic acid)	Consumption (import)	Ruminococcus albus	[121]
4-Aminobutyrate (GABA)	Consumption (import)	Agrobacterium tumefaciens (Rhizobium radiobacter)	[66]
4-Aminobutyrate (GABA)	Consumption (import)	Anaerostipes caccae	[42]
4-Aminobutyrate (GABA)	Consumption (import)	Bacillus subtilis	[66]
4-Aminobutyrate (GABA)	Production (export)	Bifidobacterium adolescentis	[14]
4-Aminobutyrate (GABA)	Production (export)	Bifidobacterium dentium	[14]
4-Aminobutyrate (GABA)	Production (export)	Bifidobacterium longum (Bifidobacterium infantis, Bifidobacterium suis)	[14]
4-Aminobutyrate (GABA)	Consumption (import)	Clostridium acetobutylicum	[42]
4-Aminobutyrate (GABA)	Production (export)	Clostridium botulinum	[212]
4-Aminobutyrate (GABA)	Production (export)	Clostridium difficile	[212]
4-Aminobutyrate (GABA)	Production (export)	Clostridium sporogenes	[212]
4-Aminobutyrate (GABA)	Consumption (import)	Colonocyte (host colon)	[336]
4-Aminobutyrate (GABA)	Consumption (import)	Corynebacterium glutamicum	[66]
4-Aminobutyrate (GABA)	Production (export)	Escherichia coli	[66]
4-Aminobutyrate (GABA)	Production (export)	Lactobacillus brevis	[14]
4-Aminobutyrate (GABA)	Production (export)	Lactobacillus rhamnosus	[201]
4-Aminobutyrate (GABA)	Production (export)	Pseudomonas aeruginosa	[66]
4-Aminobutyrate (GABA)	Production (export)	Pseudomonas fluorescens	[66]
5-Aminovalerate	Production (export)	Clostridium botulinum	[86,212]
5-Aminovalerate	Production (export)	Clostridium difficile	[212]
5-Aminovalerate	Production (export)	Clostridium sporogenes	[86,212]
5-Aminovalerate	Production (export)	Clostridium sticklandii	[86]
Acetaldehyde	Consumption (import)	Colonocyte (host colon)	[336]
Acetate	Production (export)	Acetivibrio cellulolyticus	[237]
Acetate	Production (export)	Acetobacter pasteurianus	[134]
Acetate	Production (export)	Acetohalobium arabaticum	[233,Supplementary Data 2d]
Acetate	Production (export)	Acholeplasma laidlawii	[171]
Acetate	Production (export)	Acidaminococcus fermentans	[41,88,143,263]
Acetate	Production (export)	Actinomyces coleocanis	[145]
Acetate	Production (export)	Actinomyces odontolyticus	[145]
Acetate	Production (export)	Actinomyces oris	[145]
Acetate	Production (export)	Actinomyces urogenitalis	[145]
Acetate	Production (export)	Actinomyces viscosus	[145]
Acetate	Consumption (import) & production (export)	Anaerostipes caccae	[85,91,94,184,285]
Acetate	Production (export)	Anaerotruncus colihominis	[170]
Acetate	Production (export)	Archaeoglobus fulgidus	[81,303]
Acetate	Production (export)	Atopobium parvulum	[185]
Acetate	Production (export)	Atopobium rimae	[185]
Acetate	Production (export)	Atopobium vaginae	[185]
Acetate	Production (export)	Bacillus subtilis	[122]
Acetate	Production (export)	Bacteroides caccae	[149,185,197,198,366]
Acetate	Production (export)	Bacteroides cellulosilyticus	[149,185,197,198,366]
Acetate	Production (export)	Bacteroides coprocola	[149,185,197,198,366]
Acetate	Production (export)	Bacteroides coprophilus	[149,185,197,198,366]
Acetate	Production (export)	Bacteroides dorei	[149,185,197,198,366]
Acetate	Production (export)	Bacteroides eggerthii	[149,185,197,198,366]
Acetate	Production (export)	Bacteroides finegoldii (Alistipes finegoldii)	[252,149,185,197,198,366]
Acetate	Production (export)	Bacteroides fragilis	[198,149,185,197,198,366]
Acetate	Production (export)	Bacteroides helcogenes	[149,185,197,198,366]
Acetate	Production (export)	Bacteroides intestinalis	[149,185,197,198,366]
Acetate	Production (export)	Bacteroides ovatus	[190,149,185,197,198,366]
Acetate	Production (export)	Bacteroides pectinophilus	[149,185,197,198,366]
Acetate	Production (export)	Bacteroides plebeius	[149,185,197,198,366]
Acetate	Production (export)	Bacteroides salanitronis	[149,185,197,198,366]
Acetate	Production (export)	Bacteroides stercoris	[149,185,197,198,366]
Acetate	Production (export)	Bacteroides thetaiotaomicron	[92,118,199,256,281,149,185,197,198,366]
Acetate	Production (export)	Bacteroides uniformis	[149,185,197,198,366]
Acetate	Production (export)	Bacteroides vulgatus	[149,185,197,198,366]
Acetate	Production (export)	Bacteroides xylanisolvens	[44,149,185,197,198,366]
Acetate	Production (export)	Bifidobacterium adolescentis	[94,18,91,145,185,273,285,350,363]
Acetate	Production (export)	Bifidobacterium angulatum	[18,91,145,185,273,285,350,363]
Acetate	Production (export)	Bifidobacterium animalis	[18,91,145,185,273,285,350,363]
Acetate	Production (export)	Bifidobacterium bifidum	[155,18,91,145,185,273,285,350,363]
Acetate	Production (export)	Bifidobacterium breve	[190,18,91,145,185,273,285,350,363]
Acetate	Production (export)	Bifidobacterium catenulatum	[18,91,145,185,273,285,350,363]
Acetate	Production (export)	Bifidobacterium dentium	[18,91,145,185,273,285,350,363]
Acetate	Production (export)	Bifidobacterium gallicum	[18,91,145,185,273,285,350,363]
Acetate	Production (export)	Bifidobacterium longum (Bifidobacterium infantis, Bifidobacterium suis)	[13,68,91,295,18,91,145,185,273,285,350,363,18,91,145,185,273,285,350,363]
Acetate	Production (export)	Bifidobacterium pseudocatenulatum	[18,91,145,185,273,285,350,363]
Acetate	Production (export)	Bilophila wadsworthia	[169,304]
Acetate	Production (export)	Blautia hydrogenotrophica (Ruminococcus hydrogenotrophicus)	[24,46,92,94,256]
Acetate	Consumption (import) & production (export)	Butyrivibrio crossotus	[217,197,366]
Acetate	Consumption (import) & production (export)	Butyrivibrio fibrisolvens	[94,184,217,249,197,366]
Acetate	Consumption (import) & production (export)	Butyrivibrio proteoclasticus	[217,197,366]
Acetate	Production (export)	Catenibacterium mitsuokai	[146]
Acetate	Production (export)	Citrobacter koseri	[232]
Acetate	Production (export)	Citrobacter rodentium	[232]
Acetate	Production (export)	Citrobacter youngae	[232]
Acetate	Production (export)	Clostridium acetobutylicum	[278,175,316]
Acetate	Production (export)	Clostridium asparagiforme	[175,316]
Acetate	Production (export)	Clostridium bartlettii	[175,316]
Acetate	Production (export)	Clostridium beijerinckii	[48,216,175,316]
Acetate	Production (export)	Clostridium bolteae	[175,316]
Acetate	Production (export)	Clostridium botulinum	[175,316]
Acetate	Production (export)	Clostridium butyricum	[224,175,316]
Acetate	Production (export)	Clostridium carboxidivorans	[Supplementary Data 2d,175,316]
Acetate	Production (export)	Clostridium cellulolyticum	[239,278,175,316]
Acetate	Production (export)	Clostridium cellulovorans	[175,316]
Acetate	Production (export)	Clostridium cf	[175,316]
Acetate	Production (export)	Clostridium difficile	[Supplementary Data 2d,175,316]
Acetate	Production (export)	Clostridium hathewayi	[175,316]
Acetate	Production (export)	Clostridium hiranonis	[175,316]
Acetate	Production (export)	Clostridium hylemonae	[175,316]
Acetate	Consumption (import) & production (export)	Clostridium kluyveri	[249,294,294,318,319,175,316]
Acetate	Production (export)	Clostridium leptum	[128,175,316]
Acetate	Production (export)	Clostridium ljungdahlii	[Supplementary Data 2d,175,316]
Acetate	Production (export)	Clostridium methylpentosum	[175,316]
Acetate	Production (export)	Clostridium nexile	[175,316]
Acetate	Production (export)	Clostridium novyi	[175,316]
Acetate	Production (export)	Clostridium papyrosolvens	[175,316]
Acetate	Production (export)	Clostridium perfringens	[190,175,316]
Acetate	Production (export)	Clostridium phytofermentans	[175,316]
Acetate	Production (export)	Clostridium saccharolyticum	[306,175,316]
Acetate	Production (export)	Clostridium scindens	[175,316]
Acetate	Production (export)	Clostridium sporogenes	[175,316]
Acetate	Production (export)	Clostridium sticklandii	[9,175,316]
Acetate	Production (export)	Clostridium symbiosum	[175,316]
Acetate	Production (export)	Clostridium tetani	[212,306,175,316]
Acetate	Production (export)	Clostridium thermocellum	[175,316]
Acetate	Consumption (import)	Colonocyte (host colon)	[100,336]
Acetate	Consumption (import)	Comamonas testosteroni	[101]
Acetate	Consumption (import) & production (export)	Coprococcus catus	[124,184,124]
Acetate	Production (export)	Coprococcus comes	[124,124]
Acetate	Consumption (import) & production (export)	Coprococcus eutactus	[82,82,124,124]
Acetate	Consumption (import) & production (export)	Desulfobulbus propionicus	[288,288,318]
Acetate	Consumption (import)	Desulfotomaculum acetoxidans	[223]
Acetate	Consumption (import)	Desulfotomaculum nigrificans	[223]
Acetate	Consumption (import)	Desulfotomaculum reducens	[223]
Acetate	Consumption (import) & production (export)	Desulfovibrio aespoeensis	[106,318,319,319]
Acetate	Consumption (import) & production (export)	Desulfovibrio desulfuricans	[106,318,319,319]
Acetate	Consumption (import) & production (export)	Desulfovibrio fructosovorans	[106,318,319,319]
Acetate	Consumption (import) & production (export)	Desulfovibrio magneticus	[106,318,319,319]
Acetate	Consumption (import) & production (export)	Desulfovibrio piger	[106,318,319,319]
Acetate	Consumption (import) & production (export)	Desulfovibrio salexigens	[106,318,319,319]
Acetate	Consumption (import) & production (export)	Desulfovibrio vulgaris	[157,322,106,318,319,319]
Acetate	Consumption (import)	Desulfuromonas acetoxidans	[186]
Acetate	Production (export)	Dialister invisus	[80]
Acetate	Production (export)	Dorea formicigenerans	[333]
Acetate	Production (export)	Dorea longicatena	[333]
Acetate	Production (export)	Enterococcus casseliflavus	[185,363]
Acetate	Production (export)	Enterococcus faecalis (Streptococcus faecalis)	[185,363]
Acetate	Production (export)	Enterococcus faecium (Streptococcus faecium)	[185,363]
Acetate	Production (export)	Enterococcus gallinarum	[185,363]
Acetate	Production (export)	Enterococcus italicus	[185,363]
Acetate	Production (export)	Escherichia albertii	[316]
Acetate	Production (export)	Escherichia coli	[122,342,363,316]
Acetate	Production (export)	Escherichia fergusonii	[316]
Acetate	Consumption (import)	Eubacterium cellulosolvens	[149]
Acetate	Consumption (import)	Eubacterium eligens	[149]
Acetate	Consumption (import)	Eubacterium hallii	[18,85,94,184,149]
Acetate	Consumption (import) & production (export)	Eubacterium limosum	[85,147,285,Supplementary Data 2d,149]
Acetate	Consumption (import) & production (export)	Eubacterium rectale	[13,46,83,92,94,184,199,301,149]
Acetate	Consumption (import)	Eubacterium saburreum	[149]
Acetate	Consumption (import)	Eubacterium saphenum	[149]
Acetate	Consumption (import) & production (export)	Eubacterium siraeum	[49,128,149]
Acetate	Consumption (import)	Eubacterium ventriosum	[13,149]
Acetate	Consumption (import) & production (export)	Faecalibacterium prausnitzii	[13,46,82,84,94,128,184,184]
Acetate	Production (export)	Fibrobacter succinogenes (Bacteroides succinogenes)	[198,287]
Acetate	Production (export)	Finegoldia magna	[90]
Acetate	Consumption (import) & production (export)	Fusobacterium nucleatum	[182,306,306]
Acetate	Consumption (import)	Geobacter bemidjiensis	[302]
Acetate	Consumption (import)	Geobacter lovleyi	[302]
Acetate	Consumption (import) & production (export)	Geobacter metallireducens	[59,186,222,302]
Acetate	Consumption (import)	Geobacter sulfurreducens	[59,222,302,302]
Acetate	Consumption (import)	Geobacter uraniumreducens	[302]
Acetate	Consumption (import)	Haloarcula marismortui	[284]
Acetate	Consumption (import)	Haloferax volcanii	[284]
Acetate	Production (export)	Holdemania filiformis	[358,359]
Acetate	Consumption (import) & production (export)	Klebsiella pneumoniae	[4,133]
Acetate	Production (export)	Lactobacillus acidophilus	[185]
Acetate	Production (export)	Lactobacillus amylolyticus	[185]
Acetate	Production (export)	Lactobacillus amylovorus	[185]
Acetate	Production (export)	Lactobacillus antri	[185]
Acetate	Production (export)	Lactobacillus brevis	[234,185]
Acetate	Production (export)	Lactobacillus buchneri	[234,185]
Acetate	Production (export)	Lactobacillus casei	[185]
Acetate	Production (export)	Lactobacillus coleohominis	[185]
Acetate	Production (export)	Lactobacillus crispatus	[185]
Acetate	Production (export)	Lactobacillus delbrueckii	[185]
Acetate	Production (export)	Lactobacillus fermentum	[185]
Acetate	Production (export)	Lactobacillus gasseri	[185]
Acetate	Production (export)	Lactobacillus helveticus	[185]
Acetate	Production (export)	Lactobacillus hilgardii	[185]
Acetate	Production (export)	Lactobacillus iners	[185]
Acetate	Production (export)	Lactobacillus jensenii	[185]
Acetate	Production (export)	Lactobacillus johnsonii	[185]
Acetate	Production (export)	Lactobacillus oris	[185]
Acetate	Production (export)	Lactobacillus paracasei	[185]
Acetate	Production (export)	Lactobacillus plantarum	[63,179,234,185]
Acetate	Production (export)	Lactobacillus reuteri	[185]
Acetate	Production (export)	Lactobacillus rhamnosus	[185]
Acetate	Production (export)	Lactobacillus ruminis	[185]
Acetate	Production (export)	Lactobacillus sakei	[185]
Acetate	Production (export)	Lactobacillus salivarius	[185]
Acetate	Production (export)	Lactobacillus ultunensis	[185]
Acetate	Production (export)	Lactobacillus vaginalis	[185]
Acetate	Production (export)	Lactococcus lactis	[63]
Acetate	Production (export)	Marvinbryantia formatexigens	[92,256,364,Supplementary Data 2d]
Acetate	Production (export)	Megamonas hypermegale	[277]
Acetate	Production (export)	Megasphaera micronuciformis	[85,197]
Acetate	Consumption (import)	Methanobrevibacter ruminantium	[428]
Acetate	Consumption (import)	Methanobrevibacter smithii	[281,282,301]
Acetate	Consumption (import)	Methanococcus maripaludis	[157,322]
Acetate	Consumption (import)	Methanosaeta thermophila	[162,180]
Acetate	Consumption (import) & production (export)	Methanosarcina acetivorans	[20,20,81,162,28,180,318,319]
Acetate	Consumption (import)	Methanosarcina barkeri	[109,319,28,180,318,319]
Acetate	Consumption (import)	Methanosarcina mazei	[319,28,180,318,319]
Acetate	Consumption (import)	Methanosphaera stadtmanae	[180,180]
Acetate	Consumption (import)	Methanosphaerula palustris	[426]
Acetate	Consumption (import)	Methanospirillum hungatei	[426]
Acetate	Production (export)	Moorella thermoacetica	[81,256,275,Supplementary Data 2d]
Acetate	Production (export)	Mycoplasma agalactiae	[316]
Acetate	Production (export)	Mycoplasma alligatoris	[316]
Acetate	Production (export)	Mycoplasma arthritidis	[316]
Acetate	Production (export)	Mycoplasma bovis	[316]
Acetate	Production (export)	Mycoplasma capricolum	[316]
Acetate	Production (export)	Mycoplasma conjunctivae	[316]
Acetate	Production (export)	Mycoplasma crocodyli	[316]
Acetate	Production (export)	Mycoplasma fermentans	[316]
Acetate	Production (export)	Mycoplasma gallisepticum	[316]
Acetate	Production (export)	Mycoplasma genitalium	[316]
Acetate	Production (export)	Mycoplasma haemofelis	[316]
Acetate	Production (export)	Mycoplasma hominis	[316]
Acetate	Production (export)	Mycoplasma hyopneumoniae	[316]
Acetate	Production (export)	Mycoplasma hyorhinis	[316]
Acetate	Production (export)	Mycoplasma leachii	[316]
Acetate	Production (export)	Mycoplasma mobile	[316]
Acetate	Production (export)	Mycoplasma mycoides	[316]
Acetate	Production (export)	Mycoplasma penetrans	[316]
Acetate	Production (export)	Mycoplasma pneumoniae	[316]
Acetate	Production (export)	Mycoplasma pulmonis	[316]
Acetate	Production (export)	Mycoplasma synoviae	[316]
Acetate	Production (export)	Odoribacter splanchnicus	[107]
Acetate	Production (export)	Parabacteroides johnsonii	[276]
Acetate	Production (export)	Parabacteroides merdae	[276]
Acetate	Production (export)	Parvularcula bermudensis	[303]
Acetate	Production (export)	Pelobacter carbinolicus	[5,289,302,327]
Acetate	Production (export)	Pelobacter propionicus	[288,289,318]
Acetate	Production (export)	Pelotomaculum thermopropionicum	[135,162,219]
Acetate	Production (export)	Peptostreptococcus anaerobius	[316]
Acetate	Production (export)	Peptostreptococcus stomatis	[316]
Acetate	Production (export)	Prevotella amnii	[185]
Acetate	Production (export)	Prevotella bergensis	[185]
Acetate	Production (export)	Prevotella bivia	[185]
Acetate	Production (export)	Prevotella bryantii	[185]
Acetate	Production (export)	Prevotella buccae	[185]
Acetate	Production (export)	Prevotella buccalis	[185]
Acetate	Production (export)	Prevotella copri	[116,185]
Acetate	Production (export)	Prevotella disiens	[185]
Acetate	Production (export)	Prevotella marshii	[185]
Acetate	Production (export)	Prevotella melaninogenica (Bacteroides melaninogenicus)	[185]
Acetate	Production (export)	Prevotella multiformis	[185]
Acetate	Production (export)	Prevotella oralis	[185]
Acetate	Production (export)	Prevotella oris	[185]
Acetate	Production (export)	Prevotella ruminicola (Bacteroides ruminicola)	[323,369,185]
Acetate	Production (export)	Prevotella salivae	[185]
Acetate	Production (export)	Prevotella tannerae	[185]
Acetate	Production (export)	Prevotella timonensis	[185]
Acetate	Production (export)	Prevotella veroralis	[185]
Acetate	Production (export)	Propionibacterium acnes	[197,316]
Acetate	Production (export)	Propionibacterium freudenreichii (Propionibacterium shermanii)	[197,316]
Acetate	Production (export)	Pseudoflavonifractor capillosus	[40]
Acetate	Consumption (import)	Pseudomonas mendocina	[133]
Acetate	Production (export)	Pyramidobacter piscolens	[79]
Acetate	Production (export)	Pyrococcus furiosus	[303]
Acetate	Consumption (import)	Roseburia intestinalis	[46,82,83,91,92,94,184,94]
Acetate	Consumption (import)	Roseburia inulinivorans	[94,184,94]
Acetate	Production (export)	Ruminococcus albus	[318]
Acetate	Production (export)	Ruminococcus bromii	[185,350]
Acetate	Production (export)	Ruminococcus flavefaciens	[168,185,287]
Acetate	Production (export)	Ruminococcus gnavus	[326]
Acetate	Production (export)	Ruminococcus obeum	[181,326]
Acetate	Production (export)	Ruminococcus torques	[124,326]
Acetate	Production (export)	Selenomonas artemidis	[85,197]
Acetate	Production (export)	Selenomonas flueggei	[85,197]
Acetate	Production (export)	Selenomonas noxia	[85,197]
Acetate	Production (export)	Selenomonas sputigena	[85,197]
Acetate	Production (export)	Shewanella putrefaciens (Pseudomonas putrefaciens)	[186]
Acetate	Production (export)	Streptococcus agalactiae	[316]
Acetate	Production (export)	Streptococcus anginosus	[316]
Acetate	Production (export)	Streptococcus australis	[316]
Acetate	Production (export)	Streptococcus bovis (Streptococcus equinus)	[316]
Acetate	Production (export)	Streptococcus cristatus	[316]
Acetate	Production (export)	Streptococcus downei	[316]
Acetate	Production (export)	Streptococcus dysgalactiae	[316]
Acetate	Production (export)	Streptococcus equi	[316]
Acetate	Production (export)	Streptococcus gallolyticus	[316]
Acetate	Production (export)	Streptococcus gordonii	[316]
Acetate	Production (export)	Streptococcus infantarius	[316]
Acetate	Production (export)	Streptococcus infantis	[316]
Acetate	Production (export)	Streptococcus mitis	[316]
Acetate	Production (export)	Streptococcus mutans	[316]
Acetate	Production (export)	Streptococcus oralis	[316]
Acetate	Production (export)	Streptococcus parasanguinis	[316]
Acetate	Production (export)	Streptococcus peroris	[316]
Acetate	Production (export)	Streptococcus pneumoniae	[316]
Acetate	Production (export)	Streptococcus pseudoporcinus	[316]
Acetate	Production (export)	Streptococcus pyogenes	[316]
Acetate	Production (export)	Streptococcus salivarius	[316]
Acetate	Production (export)	Streptococcus sanguinis	[316]
Acetate	Production (export)	Streptococcus suis	[316]
Acetate	Production (export)	Streptococcus thermophilus	[316]
Acetate	Production (export)	Streptococcus uberis	[316]
Acetate	Production (export)	Streptococcus vestibularis	[316]
Acetate	Production (export)	Subdoligranulum variabile	[128]
Acetate	Production (export)	Syntrophobacter fumaroxidans	[31,135,162,219,302]
Acetate	Production (export)	Syntrophobotulus glycolicus	[302]
Acetate	Production (export)	Syntrophomonas wolfei	[31,137,162,219,302,318,321,367]
Acetate	Production (export)	Syntrophothermus lipocalidus	[302]
Acetate	Production (export)	Syntrophus aciditrophicus	[137,162,302]
Acetate	Production (export)	Thermotoga maritima	[219]
Acetate	Production (export)	Veillonella atypica	[85]
Acetate	Production (export)	Veillonella dispar	[85]
Acetate	Production (export)	Veillonella parvula	[187,229,85]
Acetate	Consumption (import)	Wolinella succinogenes	[302]
Acetate	Consumption (import)	Xanthomonas campestris	[331]
Acetoin (3-hydroxybutanone, acetyl methyl carbinol, [R]-Acetoin)	Production (export)	Lactobacillus plantarum	[179]
Acetoin (3-hydroxybutanone, acetyl methyl carbinol, [R]-Acetoin)	Consumption (import)	Pelobacter carbinolicus	[5,289,302]
Acetoin (3-hydroxybutanone, acetyl methyl carbinol, [R]-Acetoin)	Consumption (import)	Pelobacter propionicus	[289]
Acetone	Production (export)	Bacillus subtilis	[122]
Acetone	Production (export)	Clostridium acetobutylicum	[278,316]
Acetone	Production (export)	Clostridium asparagiforme	[316]
Acetone	Production (export)	Clostridium bartlettii	[316]
Acetone	Production (export)	Clostridium beijerinckii	[48,216,316]
Acetone	Production (export)	Clostridium bolteae	[316]
Acetone	Production (export)	Clostridium botulinum	[316]
Acetone	Production (export)	Clostridium butyricum	[316]
Acetone	Production (export)	Clostridium carboxidivorans	[316]
Acetone	Production (export)	Clostridium cellulolyticum	[316]
Acetone	Production (export)	Clostridium cellulovorans	[316]
Acetone	Production (export)	Clostridium cf	[316]
Acetone	Production (export)	Clostridium difficile	[316]
Acetone	Production (export)	Clostridium hathewayi	[316]
Acetone	Production (export)	Clostridium hiranonis	[316]
Acetone	Production (export)	Clostridium hylemonae	[316]
Acetone	Production (export)	Clostridium kluyveri	[316]
Acetone	Production (export)	Clostridium leptum	[316]
Acetone	Production (export)	Clostridium ljungdahlii	[316]
Acetone	Production (export)	Clostridium methylpentosum	[316]
Acetone	Production (export)	Clostridium nexile	[316]
Acetone	Production (export)	Clostridium novyi	[316]
Acetone	Production (export)	Clostridium papyrosolvens	[316]
Acetone	Production (export)	Clostridium perfringens	[316]
Acetone	Production (export)	Clostridium phytofermentans	[316]
Acetone	Production (export)	Clostridium saccharolyticum	[316]
Acetone	Production (export)	Clostridium scindens	[316]
Acetone	Production (export)	Clostridium sporogenes	[316]
Acetone	Production (export)	Clostridium sticklandii	[316]
Acetone	Production (export)	Clostridium symbiosum	[316]
Acetone	Production (export)	Clostridium tetani	[316]
Acetone	Production (export)	Clostridium thermocellum	[316]
Acetone	Consumption (import)	Colonocyte (host colon)	[336]
Adenine	Consumption (import)	Colonocyte (host colon)	[336]
Adenosine	Consumption (import)	Colonocyte (host colon)	[336]
Adenosylcobalamin (Vitamin B12, Cobamide coenzyme, Cob[II]alamin, Vitamin B12r, Cob[I]alamin, Vitamin B12s, Aquacobalamin, Cobalamin [III])	Production (export)	Bacillus megaterium	[173,176,203,261]
Adenosylcobalamin (Vitamin B12, Cobamide coenzyme, Cob[II]alamin, Vitamin B12r, Cob[I]alamin, Vitamin B12s, Aquacobalamin, Cobalamin [III])	Consumption (import)	Bacillus subtilis	[102]
Adenosylcobalamin (Vitamin B12, Cobamide coenzyme, Cob[II]alamin, Vitamin B12r, Cob[I]alamin, Vitamin B12s, Aquacobalamin, Cobalamin [III])	Consumption (import)	Bacteroides eggerthii	[198]
Adenosylcobalamin (Vitamin B12, Cobamide coenzyme, Cob[II]alamin, Vitamin B12r, Cob[I]alamin, Vitamin B12s, Aquacobalamin, Cobalamin [III])	Consumption (import)	Bacteroides fragilis	[198,343]
Adenosylcobalamin (Vitamin B12, Cobamide coenzyme, Cob[II]alamin, Vitamin B12r, Cob[I]alamin, Vitamin B12s, Aquacobalamin, Cobalamin [III])	Consumption (import)	Bacteroides thetaiotaomicron	[69,110,198]
Adenosylcobalamin (Vitamin B12, Cobamide coenzyme, Cob[II]alamin, Vitamin B12r, Cob[I]alamin, Vitamin B12s, Aquacobalamin, Cobalamin [III])	Consumption (import)	Bacteroides vulgatus	[198]
Adenosylcobalamin (Vitamin B12, Cobamide coenzyme, Cob[II]alamin, Vitamin B12r, Cob[I]alamin, Vitamin B12s, Aquacobalamin, Cobalamin [III])	Production (export)	Bifidobacterium bifidum	[267]
Adenosylcobalamin (Vitamin B12, Cobamide coenzyme, Cob[II]alamin, Vitamin B12r, Cob[I]alamin, Vitamin B12s, Aquacobalamin, Cobalamin [III])	Production (export)	Bifidobacterium breve	[267]
Adenosylcobalamin (Vitamin B12, Cobamide coenzyme, Cob[II]alamin, Vitamin B12r, Cob[I]alamin, Vitamin B12s, Aquacobalamin, Cobalamin [III])	Production (export)	Bifidobacterium longum (Bifidobacterium infantis, Bifidobacterium suis)	[267]
Adenosylcobalamin (Vitamin B12, Cobamide coenzyme, Cob[II]alamin, Vitamin B12r, Cob[I]alamin, Vitamin B12s, Aquacobalamin, Cobalamin [III])	Consumption (import)	Colonocyte (host colon)	[336]
Adenosylcobalamin (Vitamin B12, Cobamide coenzyme, Cob[II]alamin, Vitamin B12r, Cob[I]alamin, Vitamin B12s, Aquacobalamin, Cobalamin [III])	Consumption (import)	Corynebacterium diphtheriae	[102]
Adenosylcobalamin (Vitamin B12, Cobamide coenzyme, Cob[II]alamin, Vitamin B12r, Cob[I]alamin, Vitamin B12s, Aquacobalamin, Cobalamin [III])	Consumption (import)	Deinococcus radiodurans	[125]
Adenosylcobalamin (Vitamin B12, Cobamide coenzyme, Cob[II]alamin, Vitamin B12r, Cob[I]alamin, Vitamin B12s, Aquacobalamin, Cobalamin [III])	Consumption (import) & production (export)	Escherichia coli	[6,69,102,362]
Adenosylcobalamin (Vitamin B12, Cobamide coenzyme, Cob[II]alamin, Vitamin B12r, Cob[I]alamin, Vitamin B12s, Aquacobalamin, Cobalamin [III])	Consumption (import) & production (export)	Klebsiella pneumoniae	[102,153,178]
Adenosylcobalamin (Vitamin B12, Cobamide coenzyme, Cob[II]alamin, Vitamin B12r, Cob[I]alamin, Vitamin B12s, Aquacobalamin, Cobalamin [III])	Consumption (import)	Lactobacillus delbrueckii	[332]
Adenosylcobalamin (Vitamin B12, Cobamide coenzyme, Cob[II]alamin, Vitamin B12r, Cob[I]alamin, Vitamin B12s, Aquacobalamin, Cobalamin [III])	Production (export)	Lactobacillus reuteri	[173,174,265,283,332]
Adenosylcobalamin (Vitamin B12, Cobamide coenzyme, Cob[II]alamin, Vitamin B12r, Cob[I]alamin, Vitamin B12s, Aquacobalamin, Cobalamin [III])	Production (export)	Listeria innocua	[174]
Adenosylcobalamin (Vitamin B12, Cobamide coenzyme, Cob[II]alamin, Vitamin B12r, Cob[I]alamin, Vitamin B12s, Aquacobalamin, Cobalamin [III])	Production (export)	Mesorhizobium loti	[111]
Adenosylcobalamin (Vitamin B12, Cobamide coenzyme, Cob[II]alamin, Vitamin B12r, Cob[I]alamin, Vitamin B12s, Aquacobalamin, Cobalamin [III])	Consumption (import)	Mycobacterium leprae	[22]
Adenosylcobalamin (Vitamin B12, Cobamide coenzyme, Cob[II]alamin, Vitamin B12r, Cob[I]alamin, Vitamin B12s, Aquacobalamin, Cobalamin [III])	Production (export)	Mycobacterium smegmatis	[176]
Adenosylcobalamin (Vitamin B12, Cobamide coenzyme, Cob[II]alamin, Vitamin B12r, Cob[I]alamin, Vitamin B12s, Aquacobalamin, Cobalamin [III])	Consumption (import)	Parabacteroides distasonis	[198]
Adenosylcobalamin (Vitamin B12, Cobamide coenzyme, Cob[II]alamin, Vitamin B12r, Cob[I]alamin, Vitamin B12s, Aquacobalamin, Cobalamin [III])	Consumption (import)	Porphyromonas gingivalis	[110]
Adenosylcobalamin (Vitamin B12, Cobamide coenzyme, Cob[II]alamin, Vitamin B12r, Cob[I]alamin, Vitamin B12s, Aquacobalamin, Cobalamin [III])	Consumption (import)	Prevotella ruminicola (Bacteroides ruminicola)	[323]
Adenosylcobalamin (Vitamin B12, Cobamide coenzyme, Cob[II]alamin, Vitamin B12r, Cob[I]alamin, Vitamin B12s, Aquacobalamin, Cobalamin [III])	Production (export)	Propionibacterium freudenreichii (Propionibacterium shermanii)	[130,131,139,173,174,176,268,300]
Adenosylcobalamin (Vitamin B12, Cobamide coenzyme, Cob[II]alamin, Vitamin B12r, Cob[I]alamin, Vitamin B12s, Aquacobalamin, Cobalamin [III])	Consumption (import)	Proteus mirabilis	[102]
Adenosylcobalamin (Vitamin B12, Cobamide coenzyme, Cob[II]alamin, Vitamin B12r, Cob[I]alamin, Vitamin B12s, Aquacobalamin, Cobalamin [III])	Consumption (import)	Pseudomonas aeruginosa	[102]
Adenosylcobalamin (Vitamin B12, Cobamide coenzyme, Cob[II]alamin, Vitamin B12r, Cob[I]alamin, Vitamin B12s, Aquacobalamin, Cobalamin [III])	Consumption (import)	Ruminococcus bromii	[121]
Adenosylcobalamin (Vitamin B12, Cobamide coenzyme, Cob[II]alamin, Vitamin B12r, Cob[I]alamin, Vitamin B12s, Aquacobalamin, Cobalamin [III])	Production (export)	Salmonella enterica	[173,174]
Adenosylcobalamin (Vitamin B12, Cobamide coenzyme, Cob[II]alamin, Vitamin B12r, Cob[I]alamin, Vitamin B12s, Aquacobalamin, Cobalamin [III])	Consumption (import)	Shigella flexneri	[102]
Adenosylcobalamin (Vitamin B12, Cobamide coenzyme, Cob[II]alamin, Vitamin B12r, Cob[I]alamin, Vitamin B12s, Aquacobalamin, Cobalamin [III])	Consumption (import)	Shigella sonnei	[102]
Adenosylcobalamin (Vitamin B12, Cobamide coenzyme, Cob[II]alamin, Vitamin B12r, Cob[I]alamin, Vitamin B12s, Aquacobalamin, Cobalamin [III])	Consumption (import)	Staphylococcus aureus	[102]
Adenosylcobalamin (Vitamin B12, Cobamide coenzyme, Cob[II]alamin, Vitamin B12r, Cob[I]alamin, Vitamin B12s, Aquacobalamin, Cobalamin [III])	Production (export)	Streptomyces griseus	[176]
Adipate	Consumption (import)	Acidovorax avenae	[360]
Adipate	Consumption (import)	Acidovorax delafieldii	[360]
Alginate	Macromolecule degradation	Bacteroides ovatus	[279]
alpha-ketoglutarate (2-oxoglutarate)	Consumption (import)	Aeromicrobium marinum	[36]
alpha-Linolenic acid (Omega-3 fatty acid)	Consumption (import)	Butyrivibrio fibrisolvens	[115]
alpha-Linolenic acid (Omega-3 fatty acid)	Consumption (import)	Ruminococcus albus	[115]
alpha-Tocopherol (Vitamin E, alpha-Tocotrienol)	Consumption (import)	Colonocyte (host colon)	[336]
Anthranilate (o-amino-benzoic acid)	Consumption (import)	Colonocyte (host colon)	[336]
Arabinogalactan	Macromolecule degradation	Bacteroides ovatus	[279]
Arabinogalactan	Macromolecule degradation	Bacteroides thetaiotaomicron	[161,279]
Arabinogalactan	Macromolecule degradation	Bacteroides vulgatus	[279]
Arabinogalactan	Macromolecule degradation	Bifidobacterium longum (Bifidobacterium infantis, Bifidobacterium suis)	[62,68,280]
Arachidate (Arachidic acid)	Consumption (import)	Colonocyte (host colon)	[336]
Ascorbic acid (Vitamin C, L-Ascorbate, Ascorbate)	Consumption (import)	Colonocyte (host colon)	[336]
Ascorbic acid (Vitamin C, L-Ascorbate, Ascorbate)	Production (export)	Gluconobacter oxydans	[25]
Ascorbic acid (Vitamin C, L-Ascorbate, Ascorbate)	Production (export)	Ketogulonicigenium vulgare	[25]
Benzaldehyde	Consumption (import)	Geobacter metallireducens	[186]
Benzoate	Consumption (import)	Geobacter metallireducens	[117,186]
Benzoate	Consumption (import)	Klebsiella pneumoniae	[178]
Benzoate	Consumption (import)	Methylobacterium nodulans	[427]
Benzoate	Consumption (import)	Syntrophomonas wolfei	[137]
Benzoate	Consumption (import)	Syntrophus aciditrophicus	[137,302]
Benzyl alcohol	Consumption (import)	Geobacter metallireducens	[186]
beta-alanine (3-Aminopropionate)	Consumption (import)	Brucella suis	[242]
beta-alanine (3-Aminopropionate)	Consumption (import)	Corynebacterium diphtheriae	[242]
Betaine (Glycine betaine)	Consumption (import)	Acetohalobium arabaticum	[233]
Betaine (Glycine betaine)	Consumption (import)	Escherichia coli	[6]
Betaine (Glycine betaine)	Consumption (import)	Methanosaeta thermophila	[6]
Betaine (Glycine betaine)	Consumption (import)	Methanosarcina mazei	[6]
Betaine (Glycine betaine)	Consumption (import)	Methylobacterium nodulans	[427]
Bicarbonate (HCO3-, H2CO3, Carbonic acid, Carbonate)	Consumption (import)	Bacteroides fragilis	[343]
Bicarbonate (HCO3-, H2CO3, Carbonic acid, Carbonate)	Production (export)	Colonocyte (host colon)	[92,340,370]
Bicarbonate (HCO3-, H2CO3, Carbonic acid, Carbonate)	Consumption (import)	Desulfobulbus propionicus	[318]
Bicarbonate (HCO3-, H2CO3, Carbonic acid, Carbonate)	Consumption (import)	Methanobrevibacter smithii	[282]
Bicarbonate (HCO3-, H2CO3, Carbonic acid, Carbonate)	Consumption (import)	Pelobacter propionicus	[318]
Bicarbonate (HCO3-, H2CO3, Carbonic acid, Carbonate)	Consumption (import)	Ruminococcus bromii	[121]
Biotin (Vitamin B7)	Consumption (import)	Bacillus subtilis	[260]
Biotin (Vitamin B7)	Production (export)	Baumannia cicadellinicola	[207,368]
Biotin (Vitamin B7)	Production (export)	Bifidobacterium adolescentis	[267]
Biotin (Vitamin B7)	Production (export)	Bifidobacterium bifidum	[267,362]
Biotin (Vitamin B7)	Production (export)	Bifidobacterium longum (Bifidobacterium infantis, Bifidobacterium suis)	[267]
Biotin (Vitamin B7)	Consumption (import)	Brevibacillus brevis	[242]
Biotin (Vitamin B7)	Consumption (import)	Brucella abortus	[242]
Biotin (Vitamin B7)	Consumption (import)	Brucella melitensis	[242]
Biotin (Vitamin B7)	Consumption (import)	Brucella suis	[242]
Biotin (Vitamin B7)	Consumption (import)	Clostridium acetobutylicum	[242]
Biotin (Vitamin B7)	Consumption (import)	Clostridium botulinum	[242]
Biotin (Vitamin B7)	Consumption (import)	Clostridium butyricum	[242]
Biotin (Vitamin B7)	Consumption (import)	Clostridium sporogenes	[242]
Biotin (Vitamin B7)	Consumption (import)	Clostridium tetani	[242]
Biotin (Vitamin B7)	Consumption (import)	Colonocyte (host colon)	[336]
Biotin (Vitamin B7)	Consumption (import)	Deinococcus radiodurans	[125]
Biotin (Vitamin B7)	Production (export)	Escherichia coli	[39,362]
Biotin (Vitamin B7)	Consumption (import)	Fibrobacter succinogenes (Bacteroides succinogenes)	[198]
Biotin (Vitamin B7)	Consumption (import)	Lactobacillus acidophilus	[242]
Biotin (Vitamin B7)	Consumption (import)	Lactobacillus casei	[120,242]
Biotin (Vitamin B7)	Consumption (import)	Leuconostoc mesenteroides	[242]
Biotin (Vitamin B7)	Consumption (import)	Listeria monocytogenes	[242]
Biotin (Vitamin B7)	Consumption (import)	Paenibacillus larvae	[242]
Biotin (Vitamin B7)	Consumption (import)	Paenibacillus polymyxa	[242]
Biotin (Vitamin B7)	Consumption (import)	Rhizobium leguminosarum	[242]
Biotin (Vitamin B7)	Consumption (import)	Rhodobacter capsulatus	[260]
Biotin (Vitamin B7)	Consumption (import)	Rhodospirillum rubrum	[242]
Biotin (Vitamin B7)	Consumption (import)	Ruminococcus albus	[121]
Biotin (Vitamin B7)	Consumption (import)	Ruminococcus bromii	[121]
Biotin (Vitamin B7)	Consumption (import)	Staphylococcus aureus	[242]
Biotin (Vitamin B7)	Consumption (import)	Streptococcus bovis (Streptococcus equinus)	[242]
Biotin (Vitamin B7)	Consumption (import)	Streptococcus salivarius	[242]
Butanol	Consumption (import)	Bilophila wadsworthia	[169]
Butanol	Production (export)	Clostridium acetobutylicum	[216,278]
Butanol	Production (export)	Clostridium beijerinckii	[48,216]
Butanol	Consumption (import)	Geobacter metallireducens	[186]
Butanol	Consumption (import)	Moorella thermoacetica	[81]
Butanol	Consumption (import)	Pelobacter carbinolicus	[5,302,302]
Butanol	Consumption (import)	Pelobacter propionicus	[289,302]
Butanol	Consumption (import)	Pelotomaculum thermopropionicum	[135,162,302]
Butanol	Consumption (import)	Syntrophobacter fumaroxidans	[302]
Butanol	Consumption (import)	Syntrophobotulus glycolicus	[302]
Butanol	Consumption (import)	Syntrophomonas wolfei	[302]
Butanol	Consumption (import)	Syntrophothermus lipocalidus	[302]
Butanol	Consumption (import)	Syntrophus aciditrophicus	[302]
Butylamine	Production (export)	Bacteroides ovatus	[308]
Butylamine	Production (export)	Bacteroides thetaiotaomicron	[308]
Butylamine	Production (export)	Bifidobacterium longum (Bifidobacterium infantis, Bifidobacterium suis)	[308]
Butyrate	Production (export)	Acidaminococcus fermentans	[41,88,143,263]
Butyrate	Production (export)	Anaerococcus hydrogenalis	[90]
Butyrate	Production (export)	Anaerococcus lactolyticus	[90]
Butyrate	Production (export)	Anaerococcus prevotii	[90]
Butyrate	Production (export)	Anaerococcus tetradius	[90]
Butyrate	Production (export)	Anaerococcus vaginalis	[90]
Butyrate	Production (export)	Anaerostipes caccae	[18,19,42,85,91,94,184,189,249,285]
Butyrate	Production (export)	Anaerotruncus colihominis	[170,184]
Butyrate	Production (export)	Bacteroides caccae	[366]
Butyrate	Production (export)	Bacteroides cellulosilyticus	[366]
Butyrate	Production (export)	Bacteroides coprocola	[366]
Butyrate	Production (export)	Bacteroides coprophilus	[366]
Butyrate	Production (export)	Bacteroides dorei	[366]
Butyrate	Production (export)	Bacteroides eggerthii	[366]
Butyrate	Production (export)	Bacteroides finegoldii (Alistipes finegoldii)	[366]
Butyrate	Production (export)	Bacteroides fragilis	[366]
Butyrate	Production (export)	Bacteroides helcogenes	[366]
Butyrate	Production (export)	Bacteroides intestinalis	[366]
Butyrate	Production (export)	Bacteroides ovatus	[366]
Butyrate	Production (export)	Bacteroides pectinophilus	[366]
Butyrate	Production (export)	Bacteroides plebeius	[366]
Butyrate	Production (export)	Bacteroides salanitronis	[366]
Butyrate	Production (export)	Bacteroides stercoris	[366]
Butyrate	Production (export)	Bacteroides thetaiotaomicron	[366]
Butyrate	Production (export)	Bacteroides uniformis	[366]
Butyrate	Production (export)	Bacteroides vulgatus	[366]
Butyrate	Production (export)	Bacteroides xylanisolvens	[366]
Butyrate	Production (export)	Bifidobacterium longum (Bifidobacterium infantis, Bifidobacterium suis)	[13]
Butyrate	Production (export)	Butyrivibrio crossotus	[249,77,96,197,366]
Butyrate	Production (export)	Butyrivibrio fibrisolvens	[42,82,94,184,249,77,96,197,366]
Butyrate	Production (export)	Butyrivibrio proteoclasticus	[152,77,96,197,366]
Butyrate	Production (export)	Catenibacterium mitsuokai	[146]
Butyrate	Production (export)	Clostridium acetobutylicum	[42,249,278,77,175,316,339]
Butyrate	Production (export)	Clostridium asparagiforme	[77,175,316,339]
Butyrate	Production (export)	Clostridium bartlettii	[77,175,316,339]
Butyrate	Production (export)	Clostridium beijerinckii	[48,216,249,77,175,316,339]
Butyrate	Production (export)	Clostridium bolteae	[77,175,316,339]
Butyrate	Production (export)	Clostridium botulinum	[77,175,316,339]
Butyrate	Production (export)	Clostridium butyricum	[224,249,77,175,316,339]
Butyrate	Production (export)	Clostridium carboxidivorans	[77,175,316,339]
Butyrate	Production (export)	Clostridium cellulolyticum	[77,175,316,339]
Butyrate	Production (export)	Clostridium cellulovorans	[77,175,316,339]
Butyrate	Production (export)	Clostridium cf	[77,175,316,339]
Butyrate	Production (export)	Clostridium difficile	[249,77,175,316,339]
Butyrate	Production (export)	Clostridium hathewayi	[77,175,316,339]
Butyrate	Production (export)	Clostridium hiranonis	[77,175,316,339]
Butyrate	Production (export)	Clostridium hylemonae	[77,175,316,339]
Butyrate	Production (export)	Clostridium kluyveri	[249,294,318,77,175,316,339]
Butyrate	Production (export)	Clostridium leptum	[77,175,316,339]
Butyrate	Production (export)	Clostridium ljungdahlii	[77,175,316,339]
Butyrate	Production (export)	Clostridium methylpentosum	[77,175,316,339]
Butyrate	Production (export)	Clostridium nexile	[77,175,316,339]
Butyrate	Production (export)	Clostridium novyi	[77,175,316,339]
Butyrate	Production (export)	Clostridium papyrosolvens	[77,175,316,339]
Butyrate	Production (export)	Clostridium perfringens	[190,77,175,316,339]
Butyrate	Production (export)	Clostridium phytofermentans	[77,175,316,339]
Butyrate	Production (export)	Clostridium saccharolyticum	[306,77,175,316,339]
Butyrate	Production (export)	Clostridium scindens	[77,175,316,339]
Butyrate	Production (export)	Clostridium sporogenes	[77,175,316,339]
Butyrate	Production (export)	Clostridium sticklandii	[9,77,175,316,339]
Butyrate	Production (export)	Clostridium symbiosum	[249,77,175,316,339]
Butyrate	Production (export)	Clostridium tetani	[212,306,77,175,316,339]
Butyrate	Production (export)	Clostridium thermocellum	[77,175,316,339]
Butyrate	Consumption (import)	Colonocyte (host colon)	[100,336]
Butyrate	Production (export)	Coprococcus catus	[124,184,249,253,326]
Butyrate	Production (export)	Coprococcus comes	[184]
Butyrate	Production (export)	Coprococcus eutactus	[82,124,184,249,326]
Butyrate	Consumption (import)	Desulfarculus baarsii	[291]
Butyrate	Consumption (import)	Desulfotomaculum acetoxidans	[196,223]
Butyrate	Consumption (import)	Desulfotomaculum nigrificans	[223]
Butyrate	Consumption (import)	Desulfotomaculum reducens	[223]
Butyrate	Consumption (import)	Desulfovibrio aespoeensis	[106]
Butyrate	Consumption (import)	Desulfovibrio desulfuricans	[106]
Butyrate	Consumption (import)	Desulfovibrio fructosovorans	[106]
Butyrate	Consumption (import)	Desulfovibrio magneticus	[106]
Butyrate	Consumption (import)	Desulfovibrio piger	[106]
Butyrate	Consumption (import)	Desulfovibrio salexigens	[106]
Butyrate	Consumption (import)	Desulfovibrio vulgaris	[106]
Butyrate	Production (export)	Enterococcus faecalis (Streptococcus faecalis)	[195]
Butyrate	Production (export)	Eubacterium cellulosolvens	[249,77,83,149,185]
Butyrate	Production (export)	Eubacterium eligens	[77,83,149,185]
Butyrate	Production (export)	Eubacterium hallii	[18,19,42,85,94,184,189,285,293,77,83,149,185]
Butyrate	Production (export)	Eubacterium limosum	[85,285,77,83,149,185]
Butyrate	Production (export)	Eubacterium rectale	[13,42,83,85,92,94,95,184,199,249,285,292,293,301,350,372,77,83,149,185]
Butyrate	Production (export)	Eubacterium saburreum	[249,77,83,149,185]
Butyrate	Production (export)	Eubacterium saphenum	[77,83,149,185]
Butyrate	Production (export)	Eubacterium siraeum	[49,128,77,83,149,185]
Butyrate	Production (export)	Eubacterium ventriosum	[13,249,77,83,149,185]
Butyrate	Production (export)	Faecalibacterium prausnitzii	[13,42,82,85,94,95,128,177,184,185,249,285,292,293]
Butyrate	Production (export)	Fusobacterium gonidiaformans	[198]
Butyrate	Production (export)	Fusobacterium mortiferum	[198]
Butyrate	Production (export)	Fusobacterium nucleatum	[182,306,198]
Butyrate	Production (export)	Fusobacterium periodonticum	[198]
Butyrate	Production (export)	Fusobacterium ulcerans	[198]
Butyrate	Production (export)	Fusobacterium varium	[198]
Butyrate	Consumption (import)	Geobacter metallireducens	[186]
Butyrate	Production (export)	Megasphaera micronuciformis	[85,197]
Butyrate	Production (export)	Odoribacter splanchnicus	[107]
Butyrate	Production (export)	Pelobacter propionicus	[289]
Butyrate	Consumption (import)	Pelotomaculum thermopropionicum	[162]
Butyrate	Production (export)	Peptoniphilus harei	[90]
Butyrate	Production (export)	Peptoniphilus lacrimalis	[90]
Butyrate	Consumption (import)	Prevotella ruminicola (Bacteroides ruminicola)	[244]
Butyrate	Production (export)	Roseburia intestinalis	[42,46,82,83,85,91,92,94,184,249,285,94,96,184,185]
Butyrate	Production (export)	Roseburia inulinivorans	[94,95,184,253,292,94,96,184,185]
Butyrate	Production (export)	Subdoligranulum variabile	[128,184]
Butyrate	Consumption (import)	Syntrophobacter fumaroxidans	[162,302]
Butyrate	Consumption (import)	Syntrophobotulus glycolicus	[302]
Butyrate	Consumption (import)	Syntrophomonas wolfei	[31,137,162,219,302,318,324,367]
Butyrate	Consumption (import)	Syntrophothermus lipocalidus	[302]
Butyrate	Consumption (import)	Syntrophus aciditrophicus	[137,162,302,324]
Ca2+ (Calcium)	Consumption (import)	Colonocyte (host colon)	[336]
Cadaverine	Production (export)	Campylobacter jejuni	[230]
Cadaverine	Production (export)	Clostridium saccharolyticum	[230]
Cadaverine	Production (export)	Enterobacter cloacae	[243]
Cadaverine	Production (export)	Escherichia coli	[243,308]
Caproate (Hexanoate)	Consumption (import)	Acidovorax avenae	[360]
Caproate (Hexanoate)	Consumption (import)	Acidovorax delafieldii	[360]
Caproate (Hexanoate)	Production (export)	Clostridium kluyveri	[294]
Caproate (Hexanoate)	Consumption (import)	Syntrophomonas wolfei	[321]
Carbon monoxide (CO)	Consumption (import)	Acetohalobium arabaticum	[233]
Carbon monoxide (CO)	Consumption (import)	Archaeoglobus fulgidus	[81]
Carbon monoxide (CO)	Consumption (import)	Colonocyte (host colon)	[336]
Carbon monoxide (CO)	Consumption (import)	Methanosarcina acetivorans	[20,81,180,180]
Carbon monoxide (CO)	Consumption (import)	Methanosarcina barkeri	[180,180]
Carbon monoxide (CO)	Consumption (import)	Methanosarcina mazei	[180]
Carbon monoxide (CO)	Consumption (import)	Methanothermobacter marburgensis	[180]
Carbon monoxide (CO)	Consumption (import)	Methanothermobacter thermautotrophicus	[180]
Carbon monoxide (CO)	Consumption (import)	Moorella thermoacetica	[81]
Cellobiose	Consumption (import)	Acetivibrio cellulolyticus	[237]
Cellobiose	Consumption (import)	Actinobacillus succinogenes	[112]
Cellobiose	Consumption (import)	Aeromicrobium marinum	[36]
Cellobiose	Consumption (import)	Aeromonas salmonicida	[2]
Cellobiose	Consumption (import)	Anaerotruncus colihominis	[170]
Cellobiose	Consumption (import)	Bacteroides ovatus	[204]
Cellobiose	Consumption (import)	Bacteroides thetaiotaomicron	[118]
Cellobiose	Consumption (import)	Bacteroides uniformis	[210]
Cellobiose	Consumption (import)	Bacteroides xylanisolvens	[44]
Cellobiose	Consumption (import)	Bifidobacterium adolescentis	[247]
Cellobiose	Consumption (import)	Bifidobacterium breve	[247]
Cellobiose	Consumption (import)	Blautia hydrogenotrophica (Ruminococcus hydrogenotrophicus)	[24]
Cellobiose	Consumption (import)	Butyrivibrio fibrisolvens	[217,272]
Cellobiose	Consumption (import)	Butyrivibrio proteoclasticus	[217]
Cellobiose	Consumption (import)	Catenibacterium mitsuokai	[146]
Cellobiose	Consumption (import)	Clostridium acetobutylicum	[278]
Cellobiose	Consumption (import)	Clostridium cellulolyticum	[239,278]
Cellobiose	Consumption (import)	Clostridium thermocellum	[108,227]
Cellobiose	Consumption (import)	Collinsella aerofaciens (Eubacterium aerofaciens)	[145]
Cellobiose	Consumption (import)	Collinsella intestinalis	[145,145]
Cellobiose	Consumption (import)	Collinsella stercoris	[145]
Cellobiose	Consumption (import)	Coprococcus eutactus	[124]
Cellobiose	Consumption (import)	Eubacterium rectale	[199,210]
Cellobiose	Consumption (import)	Eubacterium siraeum	[49]
Cellobiose	Consumption (import)	Fibrobacter succinogenes (Bacteroides succinogenes)	[205,272,287]
Cellobiose	Consumption (import)	Flavobacterium johnsoniae	[424]
Cellobiose	Consumption (import)	Holdemania filiformis	[358]
Cellobiose	Consumption (import)	Klebsiella pneumoniae	[178]
Cellobiose	Consumption (import)	Leptotrichia buccalis	[87]
Cellobiose	Consumption (import)	Leptotrichia goodfellowii	[87]
Cellobiose	Consumption (import)	Leptotrichia hofstadii	[87]
Cellobiose	Consumption (import)	Marvinbryantia formatexigens	[256]
Cellobiose	Consumption (import)	Megamonas hypermegale	[277]
Cellobiose	Consumption (import)	Parabacteroides distasonis	[276]
Cellobiose	Consumption (import)	Prevotella copri	[116]
Cellobiose	Consumption (import)	Prevotella ruminicola (Bacteroides ruminicola)	[272]
Cellobiose	Consumption (import)	Pyrococcus furiosus	[6,160]
Cellobiose	Consumption (import)	Roseburia intestinalis	[83]
Cellobiose	Consumption (import)	Ruminococcus albus	[121,205,272]
Cellobiose	Consumption (import)	Ruminococcus flavefaciens	[205,272]
Cellobiose	Consumption (import)	Ruminococcus obeum	[181,210]
Cellobiose	Consumption (import)	Streptococcus bovis (Streptococcus equinus)	[205,272]
Cellobiose	Consumption (import)	Subdoligranulum variabile	[128]
Cellobiose	Consumption (import)	Sulfolobus solfataricus	[6]
Cellotetraose (Cellohexaose, Cellopentaose, Cellotriose)	Consumption (import)	Bifidobacterium breve	[247]
Cellotetraose (Cellohexaose, Cellopentaose, Cellotriose)	Consumption (import)	Clostridium thermocellum	[326]
Cellotetraose (Cellohexaose, Cellopentaose, Cellotriose)	Consumption (import)	Fibrobacter succinogenes (Bacteroides succinogenes)	[326]
Cellotetraose (Cellohexaose, Cellopentaose, Cellotriose)	Consumption (import)	Pyrococcus furiosus	[160]
Cellulose (Beta-D-glucan)	Macromolecule degradation	Acetivibrio cellulolyticus	[97,188,237,Supplementary Data 2d]
Cellulose (Beta-D-glucan)	Macromolecule degradation	Acidothermus cellulolyticus	[35,35,188,Supplementary Data 2d]
Cellulose (Beta-D-glucan)	Macromolecule degradation	Actinosynnema mirum	[34,Supplementary Data 2d]
Cellulose (Beta-D-glucan)	Macromolecule degradation	Bacillus pumilus	[188,Supplementary Data 2d]
Cellulose (Beta-D-glucan)	Macromolecule degradation	Bacteroides cellulosilyticus	[43,95,96,Supplementary Data 2d]
Cellulose (Beta-D-glucan)	Macromolecule degradation	Butyrivibrio fibrisolvens	[71,205,272,Supplementary Data 2d]
Cellulose (Beta-D-glucan)	Macromolecule degradation	Caldicellulosiruptor bescii (Anaerocellum thermophilum)	[35,35]
Cellulose (Beta-D-glucan)	Macromolecule degradation	Caldicellulosiruptor saccharolyticus	[188,Supplementary Data 2d]
Cellulose (Beta-D-glucan)	Macromolecule degradation	Cellulomonas flavigena	[188,Supplementary Data 2d]
Cellulose (Beta-D-glucan)	Macromolecule degradation	Cellulosilyticum lentocellum	[81,215,Supplementary Data 2d]
Cellulose (Beta-D-glucan)	Macromolecule degradation	Clostridium acetobutylicum	[97,Supplementary Data 2d]
Cellulose (Beta-D-glucan)	Macromolecule degradation	Clostridium cellulolyticum	[97,188,239,278,Supplementary Data 2d]
Cellulose (Beta-D-glucan)	Macromolecule degradation	Clostridium cellulovorans	[97,Supplementary Data 2d]
Cellulose (Beta-D-glucan)	Macromolecule degradation	Clostridium papyrosolvens	[97,Supplementary Data 2d]
Cellulose (Beta-D-glucan)	Macromolecule degradation	Clostridium thermocellum	[81,96,97,108,188,227,258,278,Supplementary Data 2d]
Cellulose (Beta-D-glucan)	Macromolecule degradation	Cytophaga hutchinsonii	[188,Supplementary Data 2d]
Cellulose (Beta-D-glucan)	Macromolecule degradation	Enterococcus gallinarum	[355,Supplementary Data 2d]
Cellulose (Beta-D-glucan)	Macromolecule degradation	Eubacterium cellulosolvens	[147,188,Supplementary Data 2d]
Cellulose (Beta-D-glucan)	Macromolecule degradation	Fibrobacter succinogenes (Bacteroides succinogenes)	[37,43,45,71,95,96,147,152,188,198,205,272,287,326]
Cellulose (Beta-D-glucan)	Macromolecule degradation	Marvinbryantia formatexigens	[81,Supplementary Data 2d]
Cellulose (Beta-D-glucan)	Macromolecule degradation	Prevotella ruminicola (Bacteroides ruminicola)	[45]
Cellulose (Beta-D-glucan)	Macromolecule degradation	Rhodothermus marinus	[188,Supplementary Data 2d]
Cellulose (Beta-D-glucan)	Macromolecule degradation	Ruminococcus albus	[37,43,95,96,97,121,147,188,205,272,371,372,Supplementary Data 2d]
Cellulose (Beta-D-glucan)	Macromolecule degradation	Ruminococcus flavefaciens	[37,43,71,94,95,96,97,147,152,168,188,205,227,258,272,287,371,372,Supplementary Data 2d]
Cellulose (Beta-D-glucan)	Macromolecule degradation	Spirochaeta thermophila	[188,Supplementary Data 2d]
Cellulose (Beta-D-glucan)	Macromolecule degradation	Thermobifida fusca	[188,Supplementary Data 2d]
Cellulose (Beta-D-glucan)	Macromolecule degradation	Thermomonospora curvata	[Supplementary Data 2d]
Cellulose (Beta-D-glucan)	Macromolecule degradation	Thermotoga maritima	[35,Supplementary Data 2d]
Cellulose (Beta-D-glucan)	Macromolecule degradation	Thermotoga neapolitana	[188,Supplementary Data 2d]
Chenodeoxycholic acid (Chenodeoxycholate)	Consumption (import) & production (export)	Bacteroides fragilis	[29,98,257]
Chenodeoxycholic acid (Chenodeoxycholate)	Consumption (import)	Bacteroides intestinalis	[98]
Chenodeoxycholic acid (Chenodeoxycholate)	Consumption (import)	Bacteroides thetaiotaomicron	[29]
Chenodeoxycholic acid (Chenodeoxycholate)	Production (export)	Bacteroides vulgatus	[257]
Chenodeoxycholic acid (Chenodeoxycholate)	Production (export)	Bifidobacterium adolescentis	[29,330]
Chenodeoxycholic acid (Chenodeoxycholate)	Production (export)	Bifidobacterium animalis	[330]
Chenodeoxycholic acid (Chenodeoxycholate)	Production (export)	Bifidobacterium bifidum	[29,257,330]
Chenodeoxycholic acid (Chenodeoxycholate)	Production (export)	Bifidobacterium breve	[330]
Chenodeoxycholic acid (Chenodeoxycholate)	Production (export)	Bifidobacterium longum (Bifidobacterium infantis, Bifidobacterium suis)	[29,257,330]
Chenodeoxycholic acid (Chenodeoxycholate)	Consumption (import)	Clostridium hiranonis	[208,257]
Chenodeoxycholic acid (Chenodeoxycholate)	Consumption (import)	Clostridium hylemonae	[208]
Chenodeoxycholic acid (Chenodeoxycholate)	Consumption (import)	Clostridium leptum	[29,98,208]
Chenodeoxycholic acid (Chenodeoxycholate)	Consumption (import) & production (export)	Clostridium perfringens	[29,29,257]
Chenodeoxycholic acid (Chenodeoxycholate)	Consumption (import)	Clostridium scindens	[29,98,208,257]
Chenodeoxycholic acid (Chenodeoxycholate)	Consumption (import)	Escherichia coli	[29,98]
Chenodeoxycholic acid (Chenodeoxycholate)	Production (export)	Lactobacillus acidophilus	[16,330]
Chenodeoxycholic acid (Chenodeoxycholate)	Production (export)	Lactobacillus brevis	[330]
Chenodeoxycholic acid (Chenodeoxycholate)	Production (export)	Lactobacillus buchneri	[330]
Chenodeoxycholic acid (Chenodeoxycholate)	Production (export)	Lactobacillus gasseri	[16,330]
Chenodeoxycholic acid (Chenodeoxycholate)	Production (export)	Lactobacillus hilgardii	[330]
Chenodeoxycholic acid (Chenodeoxycholate)	Production (export)	Lactobacillus johnsonii	[16,29,257,330]
Chenodeoxycholic acid (Chenodeoxycholate)	Production (export)	Lactobacillus plantarum	[16,29,257,330]
Chenodeoxycholic acid (Chenodeoxycholate)	Production (export)	Listeria monocytogenes	[16,17]
Chitin	Macromolecule degradation	Flavobacterium johnsoniae	[424]
Chitin	Macromolecule degradation	Lactococcus lactis	[210]
Chitin	Macromolecule degradation	Streptomyces lividans	[231]
Chitin	Macromolecule degradation	Vibrio cholerae	[30]
Cholecalciferol (Vitamin D3)	Consumption (import)	Colonocyte (host colon)	[336]
Cholic acid (Cholate)	Consumption (import) & production (export)	Bacteroides fragilis	[29,98,257]
Cholic acid (Cholate)	Consumption (import)	Bacteroides intestinalis	[98]
Cholic acid (Cholate)	Consumption (import)	Bacteroides thetaiotaomicron	[29,98]
Cholic acid (Cholate)	Production (export)	Bacteroides vulgatus	[257]
Cholic acid (Cholate)	Production (export)	Bifidobacterium adolescentis	[29,330]
Cholic acid (Cholate)	Production (export)	Bifidobacterium animalis	[330]
Cholic acid (Cholate)	Production (export)	Bifidobacterium bifidum	[29,257,330]
Cholic acid (Cholate)	Production (export)	Bifidobacterium breve	[330]
Cholic acid (Cholate)	Production (export)	Bifidobacterium longum (Bifidobacterium infantis, Bifidobacterium suis)	[29,257,330]
Cholic acid (Cholate)	Consumption (import)	Clostridium hiranonis	[208,257]
Cholic acid (Cholate)	Consumption (import)	Clostridium hylemonae	[208]
Cholic acid (Cholate)	Consumption (import)	Clostridium leptum	[29,98,208]
Cholic acid (Cholate)	Consumption (import) & production (export)	Clostridium perfringens	[29,29,257]
Cholic acid (Cholate)	Consumption (import)	Clostridium scindens	[29,98,208,257]
Cholic acid (Cholate)	Consumption (import)	Escherichia coli	[29,98]
Cholic acid (Cholate)	Production (export)	Lactobacillus acidophilus	[16,257,330]
Cholic acid (Cholate)	Production (export)	Lactobacillus brevis	[330]
Cholic acid (Cholate)	Production (export)	Lactobacillus buchneri	[330]
Cholic acid (Cholate)	Production (export)	Lactobacillus gasseri	[16,330]
Cholic acid (Cholate)	Production (export)	Lactobacillus hilgardii	[330]
Cholic acid (Cholate)	Production (export)	Lactobacillus johnsonii	[16,29,257,330]
Cholic acid (Cholate)	Production (export)	Lactobacillus plantarum	[16,29,257,330]
Cholic acid (Cholate)	Production (export)	Listeria monocytogenes	[16,17]
Choline	Consumption (import)	Colonocyte (host colon)	[336]
Choline	Consumption (import)	Pelobacter carbinolicus	[5]
Choline	Consumption (import)	Streptococcus parasanguinis	[183]
Chondroitin 4-sulfate (Chondroitin 6-sulfate)	Macromolecule degradation	Bacteroides ovatus	[204]
Chondroitin 4-sulfate (Chondroitin 6-sulfate)	Macromolecule degradation	Bacteroides thetaiotaomicron	[29,96,96,118,161,161,204,221,255]
cis-Aconitate (trans-Aconitate, trans-Aconitic acid)	Consumption (import)	Acidaminococcus fermentans	[41]
cis-Aconitate (trans-Aconitate, trans-Aconitic acid)	Consumption (import)	Acidovorax avenae	[360]
cis-Aconitate (trans-Aconitate, trans-Aconitic acid)	Consumption (import)	Acidovorax delafieldii	[360]
cis-Aconitate (trans-Aconitate, trans-Aconitic acid)	Consumption (import)	Methylobacterium nodulans	[427]
Citrate	Consumption (import)	Achromobacter piechaudii	[156]
Citrate	Consumption (import)	Acidaminococcus fermentans	[41,143]
Citrate	Consumption (import)	Acidovorax avenae	[360]
Citrate	Consumption (import)	Acidovorax delafieldii	[360]
Citrate	Consumption (import)	Aeromonas hydrophila	[2]
Citrate	Consumption (import)	Aeromonas salmonicida	[2]
Citrate	Consumption (import)	Colonocyte (host colon)	[336]
Citrate	Consumption (import)	Klebsiella pneumoniae	[178]
Citrate	Consumption (import)	Lactobacillus plantarum	[63,234]
Cl- (Chloride)	Consumption (import)	Colonocyte (host colon)	[336,340,370]
CO2	Production (export)	Acetivibrio cellulolyticus	[237]
CO2	Consumption (import)	Acetohalobium arabaticum	[233]
CO2	Production (export)	Acidaminococcus fermentans	[41,263]
CO2	Consumption (import)	Acidimicrobium ferrooxidans	[55]
CO2	Consumption (import)	Acidithiobacillus ferrooxidans	[158]
CO2	Production (export)	Agrobacterium tumefaciens (Rhizobium radiobacter)	[339]
CO2	Production (export)	Anaerostipes caccae	[85,91]
CO2	Production (export)	Azotobacter vinelandii	[339]
CO2	Production (export)	Bacillus amyloliquefaciens	[339]
CO2	Production (export)	Bacillus anthracis	[339]
CO2	Production (export)	Bacillus atrophaeus	[339]
CO2	Production (export)	Bacillus cellulosilyticus	[339]
CO2	Production (export)	Bacillus cereus	[339]
CO2	Production (export)	Bacillus clausii	[339]
CO2	Production (export)	Bacillus coagulans	[339]
CO2	Production (export)	Bacillus coahuilensis	[339]
CO2	Production (export)	Bacillus halodurans	[339]
CO2	Production (export)	Bacillus licheniformis	[339]
CO2	Production (export)	Bacillus megaterium	[339]
CO2	Production (export)	Bacillus mycoides	[339]
CO2	Production (export)	Bacillus pseudofirmus	[339]
CO2	Production (export)	Bacillus pseudomycoides	[339]
CO2	Production (export)	Bacillus pumilus	[339]
CO2	Production (export)	Bacillus selenitireducens	[339]
CO2	Production (export)	Bacillus subtilis	[339]
CO2	Production (export)	Bacillus thuringiensis	[339]
CO2	Production (export)	Bacillus weihenstephanensis	[339]
CO2	Consumption (import) & production (export)	Bacteroides caccae	[149,198]
CO2	Consumption (import) & production (export)	Bacteroides cellulosilyticus	[149,198]
CO2	Consumption (import) & production (export)	Bacteroides coprocola	[149,198]
CO2	Consumption (import) & production (export)	Bacteroides coprophilus	[149,198]
CO2	Consumption (import) & production (export)	Bacteroides dorei	[149,198]
CO2	Consumption (import) & production (export)	Bacteroides eggerthii	[149,198]
CO2	Consumption (import) & production (export)	Bacteroides finegoldii (Alistipes finegoldii)	[149,198]
CO2	Consumption (import) & production (export)	Bacteroides fragilis	[198,343,149,198]
CO2	Consumption (import) & production (export)	Bacteroides helcogenes	[149,198]
CO2	Consumption (import) & production (export)	Bacteroides intestinalis	[149,198]
CO2	Consumption (import) & production (export)	Bacteroides ovatus	[149,198]
CO2	Consumption (import) & production (export)	Bacteroides pectinophilus	[149,198]
CO2	Consumption (import) & production (export)	Bacteroides plebeius	[149,198]
CO2	Consumption (import) & production (export)	Bacteroides salanitronis	[149,198]
CO2	Consumption (import) & production (export)	Bacteroides stercoris	[149,198]
CO2	Consumption (import) & production (export)	Bacteroides thetaiotaomicron	[92,118,199,149,198]
CO2	Consumption (import) & production (export)	Bacteroides uniformis	[149,198]
CO2	Consumption (import) & production (export)	Bacteroides vulgatus	[149,198]
CO2	Consumption (import) & production (export)	Bacteroides xylanisolvens	[149,198]
CO2	Consumption (import)	Blautia hydrogenotrophica (Ruminococcus hydrogenotrophicus)	[24,92,94,256]
CO2	Production (export)	Butyrivibrio crossotus	[366]
CO2	Production (export)	Butyrivibrio fibrisolvens	[366]
CO2	Production (export)	Butyrivibrio proteoclasticus	[366]
CO2	Consumption (import)	Caminibacter mediatlanticus	[349]
CO2	Consumption (import)	Chloroflexus aurantiacus	[284]
CO2	Production (export)	Clostridium acetobutylicum	[316,339]
CO2	Production (export)	Clostridium asparagiforme	[316,339]
CO2	Production (export)	Clostridium bartlettii	[316,339]
CO2	Production (export)	Clostridium beijerinckii	[175,216,316,339]
CO2	Production (export)	Clostridium bolteae	[316,339]
CO2	Production (export)	Clostridium botulinum	[316,339]
CO2	Production (export)	Clostridium butyricum	[316,339]
CO2	Production (export)	Clostridium carboxidivorans	[316,339]
CO2	Production (export)	Clostridium cellulolyticum	[316,339]
CO2	Production (export)	Clostridium cellulovorans	[316,339]
CO2	Production (export)	Clostridium cf	[316,339]
CO2	Production (export)	Clostridium difficile	[316,339]
CO2	Production (export)	Clostridium hathewayi	[316,339]
CO2	Production (export)	Clostridium hiranonis	[316,339]
CO2	Production (export)	Clostridium hylemonae	[316,339]
CO2	Production (export)	Clostridium kluyveri	[316,339]
CO2	Production (export)	Clostridium leptum	[316,339]
CO2	Production (export)	Clostridium ljungdahlii	[316,339]
CO2	Production (export)	Clostridium methylpentosum	[316,339]
CO2	Production (export)	Clostridium nexile	[316,339]
CO2	Production (export)	Clostridium novyi	[316,339]
CO2	Production (export)	Clostridium papyrosolvens	[316,339]
CO2	Production (export)	Clostridium perfringens	[316,339]
CO2	Production (export)	Clostridium phytofermentans	[316,339]
CO2	Production (export)	Clostridium saccharolyticum	[316,339]
CO2	Production (export)	Clostridium scindens	[316,339]
CO2	Production (export)	Clostridium sporogenes	[316,339]
CO2	Production (export)	Clostridium sticklandii	[316,339]
CO2	Production (export)	Clostridium symbiosum	[316,339]
CO2	Production (export)	Clostridium tetani	[306,316,339]
CO2	Production (export)	Clostridium thermocellum	[316,339]
CO2	Consumption (import) & production (export)	Colonocyte (host colon)	[92,336]
CO2	Production (export)	Coprococcus eutactus	[82]
CO2	Consumption (import)	Desulfobacterium autotrophicum	[319]
CO2	Consumption (import)	Desulfobulbus propionicus	[288]
CO2	Consumption (import)	Desulfovibrio aespoeensis	[106,319]
CO2	Consumption (import)	Desulfovibrio desulfuricans	[106,319]
CO2	Consumption (import)	Desulfovibrio fructosovorans	[106,319]
CO2	Consumption (import)	Desulfovibrio magneticus	[106,319]
CO2	Consumption (import)	Desulfovibrio piger	[106,319]
CO2	Consumption (import)	Desulfovibrio salexigens	[106,319]
CO2	Consumption (import) & production (export)	Desulfovibrio vulgaris	[322,106,319]
CO2	Production (export)	Desulfuromonas acetoxidans	[186]
CO2	Production (export)	Dorea formicigenerans	[333]
CO2	Production (export)	Escherichia albertii	[316]
CO2	Production (export)	Escherichia coli	[166,316]
CO2	Production (export)	Escherichia fergusonii	[316]
CO2	Production (export)	Eubacterium cellulosolvens	[149]
CO2	Production (export)	Eubacterium eligens	[149]
CO2	Production (export)	Eubacterium hallii	[85,149]
CO2	Production (export)	Eubacterium limosum	[85,149]
CO2	Consumption (import) & production (export)	Eubacterium rectale	[92,301,149]
CO2	Production (export)	Eubacterium saburreum	[149]
CO2	Production (export)	Eubacterium saphenum	[149]
CO2	Production (export)	Eubacterium siraeum	[149]
CO2	Production (export)	Eubacterium ventriosum	[149]
CO2	Production (export)	Faecalibacterium prausnitzii	[82]
CO2	Consumption (import) & production (export)	Fibrobacter succinogenes (Bacteroides succinogenes)	[198,287]
CO2	Production (export)	Geobacter metallireducens	[186]
CO2	Production (export)	Geobacter sulfurreducens	[59]
CO2	Production (export)	Helicobacter pylori	[209]
CO2	Consumption (import)	Ignicoccus hospitalis	[284]
CO2	Production (export)	Klebsiella pneumoniae	[316]
CO2	Production (export)	Klebsiella variicola	[316]
CO2	Production (export)	Lactobacillus acidophilus	[316]
CO2	Production (export)	Lactobacillus amylolyticus	[316]
CO2	Production (export)	Lactobacillus amylovorus	[316]
CO2	Production (export)	Lactobacillus antri	[316]
CO2	Production (export)	Lactobacillus brevis	[234,316]
CO2	Production (export)	Lactobacillus buchneri	[234,316]
CO2	Production (export)	Lactobacillus casei	[316]
CO2	Production (export)	Lactobacillus coleohominis	[316]
CO2	Production (export)	Lactobacillus crispatus	[316]
CO2	Production (export)	Lactobacillus delbrueckii	[316]
CO2	Production (export)	Lactobacillus fermentum	[316]
CO2	Production (export)	Lactobacillus gasseri	[316]
CO2	Production (export)	Lactobacillus helveticus	[316]
CO2	Production (export)	Lactobacillus hilgardii	[316]
CO2	Production (export)	Lactobacillus iners	[316]
CO2	Production (export)	Lactobacillus jensenii	[316]
CO2	Production (export)	Lactobacillus johnsonii	[316]
CO2	Production (export)	Lactobacillus oris	[316]
CO2	Production (export)	Lactobacillus paracasei	[316]
CO2	Production (export)	Lactobacillus plantarum	[234,316]
CO2	Production (export)	Lactobacillus reuteri	[316]
CO2	Production (export)	Lactobacillus rhamnosus	[316]
CO2	Production (export)	Lactobacillus ruminis	[316]
CO2	Production (export)	Lactobacillus sakei	[316]
CO2	Production (export)	Lactobacillus salivarius	[316]
CO2	Production (export)	Lactobacillus ultunensis	[316]
CO2	Production (export)	Lactobacillus vaginalis	[316]
CO2	Production (export)	Leuconostoc citreum	[316]
CO2	Production (export)	Leuconostoc gasicomitatum	[316]
CO2	Production (export)	Leuconostoc kimchii	[316]
CO2	Production (export)	Leuconostoc mesenteroides	[154,339,316]
CO2	Production (export)	Marvinbryantia formatexigens	[364]
CO2	Consumption (import)	Metallosphaera sedula	[284]
CO2	Consumption (import)	Methanobrevibacter ruminantium	[168,327]
CO2	Consumption (import)	Methanobrevibacter smithii	[180,223,282]
CO2	Consumption (import)	Methanocaldococcus jannaschii	[65]
CO2	Consumption (import)	Methanococcus maripaludis	[162,322]
CO2	Consumption (import)	Methanococcus vannielii	[28]
CO2	Consumption (import)	Methanococcus voltae	[28]
CO2	Consumption (import)	Methanopyrus kandleri	[28,65,180]
CO2	Consumption (import) & production (export)	Methanosaeta thermophila	[28,180]
CO2	Consumption (import) & production (export)	Methanosarcina acetivorans	[20,162,28,180,318]
CO2	Consumption (import) & production (export)	Methanosarcina barkeri	[28,109,28,180,318]
CO2	Consumption (import) & production (export)	Methanosarcina mazei	[28,180,318]
CO2	Consumption (import)	Methanosphaerula palustris	[426]
CO2	Consumption (import)	Methanospirillum hungatei	[162,318,321]
CO2	Consumption (import)	Methanothermobacter thermautotrophicus	[65,162]
CO2	Consumption (import)	Methanothermus fervidus	[28]
CO2	Production (export)	Methylococcus capsulatus	[356]
CO2	Production (export)	Mycoplasma agalactiae	[316]
CO2	Production (export)	Mycoplasma alligatoris	[316]
CO2	Production (export)	Mycoplasma arthritidis	[316]
CO2	Production (export)	Mycoplasma bovis	[316]
CO2	Production (export)	Mycoplasma capricolum	[316]
CO2	Production (export)	Mycoplasma conjunctivae	[316]
CO2	Production (export)	Mycoplasma crocodyli	[316]
CO2	Production (export)	Mycoplasma fermentans	[316]
CO2	Production (export)	Mycoplasma gallisepticum	[316]
CO2	Production (export)	Mycoplasma genitalium	[316]
CO2	Production (export)	Mycoplasma haemofelis	[316]
CO2	Production (export)	Mycoplasma hominis	[316]
CO2	Production (export)	Mycoplasma hyopneumoniae	[316]
CO2	Production (export)	Mycoplasma hyorhinis	[316]
CO2	Production (export)	Mycoplasma leachii	[316]
CO2	Production (export)	Mycoplasma mobile	[316]
CO2	Production (export)	Mycoplasma mycoides	[316]
CO2	Production (export)	Mycoplasma penetrans	[316]
CO2	Production (export)	Mycoplasma pneumoniae	[316]
CO2	Production (export)	Mycoplasma pulmonis	[316]
CO2	Production (export)	Mycoplasma synoviae	[316]
CO2	Production (export)	Oxalobacter formigenes	[27,29,164]
CO2	Production (export)	Parvularcula bermudensis	[303]
CO2	Consumption (import)	Pelobacter propionicus	[288]
CO2	Consumption (import) & production (export)	Pelotomaculum thermopropionicum	[135,162,219,302]
CO2	Production (export)	Peptostreptococcus anaerobius	[316]
CO2	Production (export)	Peptostreptococcus stomatis	[316]
CO2	Production (export)	Porphyromonas asaccharolytica	[306]
CO2	Production (export)	Propionibacterium acnes	[316]
CO2	Production (export)	Propionibacterium freudenreichii (Propionibacterium shermanii)	[316]
CO2	Consumption (import) & production (export)	Pseudomonas aeruginosa	[273,339]
CO2	Production (export)	Pyrobaculum aerophilum	[303]
CO2	Production (export)	Roseburia intestinalis	[82,83,91,94]
CO2	Production (export)	Ruminococcus albus	[318]
CO2	Consumption (import) & production (export)	Ruminococcus flavefaciens	[168,287]
CO2	Production (export)	Shewanella putrefaciens (Pseudomonas putrefaciens)	[186]
CO2	Production (export)	Streptococcus agalactiae	[316,339]
CO2	Production (export)	Streptococcus anginosus	[316,339]
CO2	Production (export)	Streptococcus australis	[316,339]
CO2	Production (export)	Streptococcus bovis (Streptococcus equinus)	[316,339]
CO2	Production (export)	Streptococcus cristatus	[316,339]
CO2	Production (export)	Streptococcus downei	[316,339]
CO2	Production (export)	Streptococcus dysgalactiae	[316,339]
CO2	Production (export)	Streptococcus equi	[316,339]
CO2	Production (export)	Streptococcus gallolyticus	[316,339]
CO2	Production (export)	Streptococcus gordonii	[316,339]
CO2	Production (export)	Streptococcus infantarius	[316,339]
CO2	Production (export)	Streptococcus infantis	[316,339]
CO2	Production (export)	Streptococcus mitis	[316,339]
CO2	Production (export)	Streptococcus mutans	[316,339]
CO2	Production (export)	Streptococcus oralis	[316,339]
CO2	Production (export)	Streptococcus parasanguinis	[316,339]
CO2	Production (export)	Streptococcus peroris	[316,339]
CO2	Production (export)	Streptococcus pneumoniae	[316,339]
CO2	Production (export)	Streptococcus pseudoporcinus	[316,339]
CO2	Production (export)	Streptococcus pyogenes	[316,339]
CO2	Production (export)	Streptococcus salivarius	[316,339]
CO2	Production (export)	Streptococcus sanguinis	[316,339]
CO2	Production (export)	Streptococcus suis	[316,339]
CO2	Production (export)	Streptococcus thermophilus	[316,339]
CO2	Production (export)	Streptococcus uberis	[316,339]
CO2	Production (export)	Streptococcus vestibularis	[316,339]
CO2	Production (export)	Sulfolobus solfataricus	[303]
CO2	Production (export)	Syntrophobacter fumaroxidans	[135,162,219]
CO2	Consumption (import) & production (export)	Syntrophomonas wolfei	[31,162,219,302]
CO2	Consumption (import) & production (export)	Syntrophus aciditrophicus	[162,302]
CO2	Production (export)	Thermoplasma acidophilum	[303]
CO2	Production (export)	Thermotoga maritima	[219]
CO2	Consumption (import)	Thiobacillus denitrificans	[10]
CO2	Production (export)	Veillonella parvula	[229]
CO2	Production (export)	Zymomonas mobilis	[339]
Crotonate (2-Butenoate, 2-Butenoic acid, Crotonic acid, 3-Methylacrylic acid)	Consumption (import)	Clostridium kluyveri	[294]
Crotonate (2-Butenoate, 2-Butenoic acid, Crotonic acid, 3-Methylacrylic acid)	Consumption (import)	Syntrophomonas wolfei	[314]
Cu2+ (Copper)	Consumption (import)	Colonocyte (host colon)	[336]
Cytidine	Consumption (import)	Colonocyte (host colon)	[336]
Cytosine	Consumption (import)	Colonocyte (host colon)	[336]
D-Arabinose (L-Arabinose, Arabinose, L-Arabinopyranose, L-Arabinofuranose)	Consumption (import)	Acidovorax avenae	[360]
D-Arabinose (L-Arabinose, Arabinose, L-Arabinopyranose, L-Arabinofuranose)	Consumption (import)	Acidovorax delafieldii	[360]
D-Arabinose (L-Arabinose, Arabinose, L-Arabinopyranose, L-Arabinofuranose)	Consumption (import)	Actinobacillus succinogenes	[112]
D-Arabinose (L-Arabinose, Arabinose, L-Arabinopyranose, L-Arabinofuranose)	Consumption (import)	Aeromonas hydrophila	[2]
D-Arabinose (L-Arabinose, Arabinose, L-Arabinopyranose, L-Arabinofuranose)	Consumption (import)	Aeromonas salmonicida	[2]
D-Arabinose (L-Arabinose, Arabinose, L-Arabinopyranose, L-Arabinofuranose)	Consumption (import)	Bacteroides ovatus	[204]
D-Arabinose (L-Arabinose, Arabinose, L-Arabinopyranose, L-Arabinofuranose)	Consumption (import)	Bacteroides thetaiotaomicron	[11,118,204,312]
D-Arabinose (L-Arabinose, Arabinose, L-Arabinopyranose, L-Arabinofuranose)	Consumption (import)	Bacteroides xylanisolvens	[44]
D-Arabinose (L-Arabinose, Arabinose, L-Arabinopyranose, L-Arabinofuranose)	Consumption (import)	Butyrivibrio fibrisolvens	[217]
D-Arabinose (L-Arabinose, Arabinose, L-Arabinopyranose, L-Arabinofuranose)	Consumption (import)	Butyrivibrio proteoclasticus	[217]
D-Arabinose (L-Arabinose, Arabinose, L-Arabinopyranose, L-Arabinofuranose)	Consumption (import)	Clostridium acetobutylicum	[278]
D-Arabinose (L-Arabinose, Arabinose, L-Arabinopyranose, L-Arabinofuranose)	Consumption (import)	Colonocyte (host colon)	[336]
D-Arabinose (L-Arabinose, Arabinose, L-Arabinopyranose, L-Arabinofuranose)	Consumption (import)	Coprococcus comes	[124]
D-Arabinose (L-Arabinose, Arabinose, L-Arabinopyranose, L-Arabinofuranose)	Consumption (import)	Dorea longicatena	[333]
D-Arabinose (L-Arabinose, Arabinose, L-Arabinopyranose, L-Arabinofuranose)	Consumption (import)	Eubacterium rectale	[199]
D-Arabinose (L-Arabinose, Arabinose, L-Arabinopyranose, L-Arabinofuranose)	Consumption (import)	Holdemania filiformis	[358]
D-Arabinose (L-Arabinose, Arabinose, L-Arabinopyranose, L-Arabinofuranose)	Consumption (import)	Klebsiella pneumoniae	[178]
D-Arabinose (L-Arabinose, Arabinose, L-Arabinopyranose, L-Arabinofuranose)	Consumption (import)	Marvinbryantia formatexigens	[256]
D-Arabinose (L-Arabinose, Arabinose, L-Arabinopyranose, L-Arabinofuranose)	Consumption (import)	Megamonas hypermegale	[277]
D-Arabinose (L-Arabinose, Arabinose, L-Arabinopyranose, L-Arabinofuranose)	Consumption (import)	Methylobacterium nodulans	[427]
D-Arabinose (L-Arabinose, Arabinose, L-Arabinopyranose, L-Arabinofuranose)	Consumption (import)	Odoribacter splanchnicus	[107]
D-Arabinose (L-Arabinose, Arabinose, L-Arabinopyranose, L-Arabinofuranose)	Consumption (import)	Prevotella copri	[116]
D-Arabinose (L-Arabinose, Arabinose, L-Arabinopyranose, L-Arabinofuranose)	Consumption (import)	Prevotella ruminicola (Bacteroides ruminicola)	[205]
D-Arabinose (L-Arabinose, Arabinose, L-Arabinopyranose, L-Arabinofuranose)	Consumption (import)	Roseburia intestinalis	[83]
D-Arabinose (L-Arabinose, Arabinose, L-Arabinopyranose, L-Arabinofuranose)	Consumption (import)	Ruminococcus obeum	[181]
D-Arabinose (L-Arabinose, Arabinose, L-Arabinopyranose, L-Arabinofuranose)	Consumption (import)	Shigella boydii	[365]
D-Arabinose (L-Arabinose, Arabinose, L-Arabinopyranose, L-Arabinofuranose)	Consumption (import)	Sulfolobus acidocaldarius	[284]
D-Arabinose (L-Arabinose, Arabinose, L-Arabinopyranose, L-Arabinofuranose)	Consumption (import)	Sulfolobus solfataricus	[6,284]
D-Fructose (Fructose)	Consumption (import)	Acholeplasma laidlawii	[171]
D-Fructose (Fructose)	Consumption (import)	Actinobacillus succinogenes	[112]
D-Fructose (Fructose)	Consumption (import)	Anaerostipes caccae	[91]
D-Fructose (Fructose)	Consumption (import)	Anaerotruncus colihominis	[170]
D-Fructose (Fructose)	Consumption (import)	Bacteroides caccae	[313,198]
D-Fructose (Fructose)	Consumption (import)	Bacteroides cellulosilyticus	[198]
D-Fructose (Fructose)	Consumption (import)	Bacteroides coprocola	[198]
D-Fructose (Fructose)	Consumption (import)	Bacteroides coprophilus	[198]
D-Fructose (Fructose)	Consumption (import)	Bacteroides dorei	[198]
D-Fructose (Fructose)	Consumption (import)	Bacteroides eggerthii	[198]
D-Fructose (Fructose)	Consumption (import)	Bacteroides finegoldii (Alistipes finegoldii)	[198]
D-Fructose (Fructose)	Consumption (import)	Bacteroides fragilis	[313,198]
D-Fructose (Fructose)	Consumption (import)	Bacteroides helcogenes	[198]
D-Fructose (Fructose)	Consumption (import)	Bacteroides intestinalis	[198]
D-Fructose (Fructose)	Consumption (import)	Bacteroides ovatus	[204,313,198]
D-Fructose (Fructose)	Consumption (import)	Bacteroides pectinophilus	[198]
D-Fructose (Fructose)	Consumption (import)	Bacteroides plebeius	[198]
D-Fructose (Fructose)	Consumption (import)	Bacteroides salanitronis	[198]
D-Fructose (Fructose)	Consumption (import)	Bacteroides stercoris	[198]
D-Fructose (Fructose)	Consumption (import)	Bacteroides thetaiotaomicron	[118,204,255,313,198]
D-Fructose (Fructose)	Consumption (import)	Bacteroides uniformis	[313,198]
D-Fructose (Fructose)	Consumption (import)	Bacteroides vulgatus	[313,198]
D-Fructose (Fructose)	Consumption (import)	Bacteroides xylanisolvens	[44,198]
D-Fructose (Fructose)	Consumption (import)	Bifidobacterium adolescentis	[345,238]
D-Fructose (Fructose)	Consumption (import)	Bifidobacterium angulatum	[238]
D-Fructose (Fructose)	Consumption (import)	Bifidobacterium animalis	[238]
D-Fructose (Fructose)	Consumption (import)	Bifidobacterium bifidum	[238]
D-Fructose (Fructose)	Consumption (import)	Bifidobacterium breve	[238]
D-Fructose (Fructose)	Consumption (import)	Bifidobacterium catenulatum	[238]
D-Fructose (Fructose)	Consumption (import)	Bifidobacterium dentium	[238]
D-Fructose (Fructose)	Consumption (import)	Bifidobacterium gallicum	[238]
D-Fructose (Fructose)	Consumption (import)	Bifidobacterium longum (Bifidobacterium infantis, Bifidobacterium suis)	[91,345,238,238]
D-Fructose (Fructose)	Consumption (import)	Bifidobacterium pseudocatenulatum	[238]
D-Fructose (Fructose)	Consumption (import)	Blautia hydrogenotrophica (Ruminococcus hydrogenotrophicus)	[24,256]
D-Fructose (Fructose)	Consumption (import)	Butyrivibrio fibrisolvens	[217,351]
D-Fructose (Fructose)	Consumption (import)	Butyrivibrio proteoclasticus	[217]
D-Fructose (Fructose)	Consumption (import)	Catenibacterium mitsuokai	[146]
D-Fructose (Fructose)	Consumption (import)	Clostridium difficile	[335]
D-Fructose (Fructose)	Consumption (import)	Collinsella intestinalis	[145]
D-Fructose (Fructose)	Consumption (import)	Colonocyte (host colon)	[100,336]
D-Fructose (Fructose)	Consumption (import)	Coprococcus catus	[124]
D-Fructose (Fructose)	Consumption (import)	Coprococcus comes	[124]
D-Fructose (Fructose)	Consumption (import)	Coprococcus eutactus	[124]
D-Fructose (Fructose)	Consumption (import)	Dorea formicigenerans	[333]
D-Fructose (Fructose)	Consumption (import)	Dorea longicatena	[333]
D-Fructose (Fructose)	Consumption (import)	Eubacterium siraeum	[49]
D-Fructose (Fructose)	Consumption (import)	Faecalibacterium prausnitzii	[238]
D-Fructose (Fructose)	Consumption (import)	Flavobacterium johnsoniae	[424]
D-Fructose (Fructose)	Consumption (import)	Holdemania filiformis	[358,359]
D-Fructose (Fructose)	Consumption (import)	Lactobacillus acidophilus	[264,238]
D-Fructose (Fructose)	Consumption (import)	Lactobacillus amylolyticus	[238]
D-Fructose (Fructose)	Consumption (import)	Lactobacillus amylovorus	[264,238]
D-Fructose (Fructose)	Consumption (import)	Lactobacillus antri	[238]
D-Fructose (Fructose)	Consumption (import)	Lactobacillus brevis	[238]
D-Fructose (Fructose)	Consumption (import)	Lactobacillus buchneri	[238]
D-Fructose (Fructose)	Consumption (import)	Lactobacillus casei	[238]
D-Fructose (Fructose)	Consumption (import)	Lactobacillus coleohominis	[238]
D-Fructose (Fructose)	Consumption (import)	Lactobacillus crispatus	[238]
D-Fructose (Fructose)	Consumption (import)	Lactobacillus delbrueckii	[238]
D-Fructose (Fructose)	Consumption (import)	Lactobacillus fermentum	[238]
D-Fructose (Fructose)	Consumption (import)	Lactobacillus gasseri	[264,238]
D-Fructose (Fructose)	Consumption (import)	Lactobacillus helveticus	[238]
D-Fructose (Fructose)	Consumption (import)	Lactobacillus hilgardii	[238]
D-Fructose (Fructose)	Consumption (import)	Lactobacillus iners	[238]
D-Fructose (Fructose)	Consumption (import)	Lactobacillus jensenii	[238]
D-Fructose (Fructose)	Consumption (import)	Lactobacillus johnsonii	[264,238]
D-Fructose (Fructose)	Consumption (import)	Lactobacillus oris	[238]
D-Fructose (Fructose)	Consumption (import)	Lactobacillus paracasei	[238]
D-Fructose (Fructose)	Consumption (import)	Lactobacillus plantarum	[238]
D-Fructose (Fructose)	Consumption (import)	Lactobacillus reuteri	[238]
D-Fructose (Fructose)	Consumption (import)	Lactobacillus rhamnosus	[380,238]
D-Fructose (Fructose)	Consumption (import)	Lactobacillus ruminis	[238]
D-Fructose (Fructose)	Consumption (import)	Lactobacillus sakei	[238]
D-Fructose (Fructose)	Consumption (import)	Lactobacillus salivarius	[238]
D-Fructose (Fructose)	Consumption (import)	Lactobacillus ultunensis	[238]
D-Fructose (Fructose)	Consumption (import)	Lactobacillus vaginalis	[238]
D-Fructose (Fructose)	Consumption (import)	Leuconostoc mesenteroides	[387]
D-Fructose (Fructose)	Consumption (import)	Marvinbryantia formatexigens	[256]
D-Fructose (Fructose)	Consumption (import)	Odoribacter splanchnicus	[107]
D-Fructose (Fructose)	Consumption (import)	Pediococcus acidilactici	[388]
D-Fructose (Fructose)	Consumption (import)	Roseburia intestinalis	[83,91]
D-Fructose (Fructose)	Consumption (import)	Ruminococcus bromii	[121]
D-Fructose (Fructose)	Consumption (import)	Streptococcus parasanguinis	[383]
D-Fructose (Fructose)	Consumption (import)	Streptococcus salivarius	[390]
D-Fructose (Fructose)	Consumption (import)	Streptococcus vestibularis	[384]
D-Fructose (Fructose)	Consumption (import)	Subdoligranulum variabile	[128]
D-Fructose (Fructose)	Consumption (import)	Sulfolobus solfataricus	[7]
D-Fructuronate	Consumption (import)	Escherichia coli	[240]
D-Galactosamine (Galactosamine)	Consumption (import)	Bifidobacterium animalis	[62]
D-Galactosamine (Galactosamine)	Consumption (import)	Bifidobacterium breve	[62]
D-Galactosamine (Galactosamine)	Consumption (import)	Bifidobacterium catenulatum	[62]
D-Galactosamine (Galactosamine)	Consumption (import)	Bifidobacterium dentium	[62]
D-Galactosamine (Galactosamine)	Consumption (import)	Bifidobacterium longum (Bifidobacterium infantis, Bifidobacterium suis)	[62]
D-Galactose	Consumption (import)	Acholeplasma laidlawii	[171]
D-Galactose	Consumption (import)	Achromobacter xylosoxidans	[254]
D-Galactose	Consumption (import)	Acidovorax avenae	[360]
D-Galactose	Consumption (import)	Acidovorax delafieldii	[360]
D-Galactose	Consumption (import)	Anaerococcus lactolyticus	[90]
D-Galactose	Consumption (import)	Anaerotruncus colihominis	[170]
D-Galactose	Consumption (import)	Bacteroides eggerthii	[124]
D-Galactose	Consumption (import)	Bacteroides ovatus	[204]
D-Galactose	Consumption (import)	Bacteroides thetaiotaomicron	[11,118,204,301]
D-Galactose	Consumption (import)	Bacteroides xylanisolvens	[44]
D-Galactose	Consumption (import)	Bifidobacterium adolescentis	[345,285]
D-Galactose	Consumption (import)	Bifidobacterium angulatum	[285]
D-Galactose	Consumption (import)	Bifidobacterium animalis	[285]
D-Galactose	Consumption (import)	Bifidobacterium bifidum	[155,285]
D-Galactose	Consumption (import)	Bifidobacterium breve	[285]
D-Galactose	Consumption (import)	Bifidobacterium catenulatum	[285]
D-Galactose	Consumption (import)	Bifidobacterium dentium	[285]
D-Galactose	Consumption (import)	Bifidobacterium gallicum	[285]
D-Galactose	Consumption (import)	Bifidobacterium longum (Bifidobacterium infantis, Bifidobacterium suis)	[68,345,285,285]
D-Galactose	Consumption (import)	Bifidobacterium pseudocatenulatum	[285]
D-Galactose	Consumption (import)	Blautia hydrogenotrophica (Ruminococcus hydrogenotrophicus)	[24]
D-Galactose	Consumption (import)	Butyrivibrio fibrisolvens	[217]
D-Galactose	Consumption (import)	Butyrivibrio proteoclasticus	[217]
D-Galactose	Consumption (import)	Catenibacterium mitsuokai	[146]
D-Galactose	Consumption (import)	Clostridium acetobutylicum	[278]
D-Galactose	Consumption (import)	Clostridium nexile	[124]
D-Galactose	Consumption (import)	Collinsella intestinalis	[145]
D-Galactose	Consumption (import)	Colonocyte (host colon)	[100,336]
D-Galactose	Consumption (import)	Coprococcus comes	[124]
D-Galactose	Consumption (import)	Dorea formicigenerans	[333]
D-Galactose	Consumption (import)	Dorea longicatena	[333]
D-Galactose	Consumption (import)	Escherichia coli	[29]
D-Galactose	Consumption (import)	Flavobacterium johnsoniae	[424]
D-Galactose	Consumption (import)	Marvinbryantia formatexigens	[256,364]
D-Galactose	Consumption (import)	Methylobacterium nodulans	[427]
D-Galactose	Consumption (import)	Odoribacter splanchnicus	[107]
D-Galactose	Consumption (import)	Picrophilus torridus	[303]
D-Galactose	Consumption (import)	Ruminococcus torques	[124]
D-Galactose	Consumption (import)	Subdoligranulum variabile	[128]
D-Galactose	Consumption (import)	Sulfolobus acidocaldarius	[284]
D-Galactose	Consumption (import)	Sulfolobus solfataricus	[7,284]
D-Galacturonate	Consumption (import)	Bacteroides eggerthii	[279]
D-Galacturonate	Consumption (import)	Bacteroides fragilis	[279]
D-Galacturonate	Consumption (import)	Bacteroides ovatus	[204,279]
D-Galacturonate	Consumption (import)	Bacteroides thetaiotaomicron	[118,204,279]
D-Galacturonate	Consumption (import)	Bacteroides vulgatus	[279]
D-Galacturonate	Consumption (import)	Butyrivibrio proteoclasticus	[152]
D-Galacturonate	Consumption (import)	Escherichia coli	[29,240]
D-Galacturonate	Consumption (import)	Flavobacterium johnsoniae	[424]
D-Gluconate (D-Gluconic acid) (Gluconate)	Consumption (import)	Achromobacter piechaudii	[156]
D-Gluconate (D-Gluconic acid) (Gluconate)	Consumption (import)	Escherichia coli	[240]
D-Gluconate (D-Gluconic acid) (Gluconate)	Consumption (import)	Klebsiella pneumoniae	[178]
D-Gluconate (D-Gluconic acid) (Gluconate)	Consumption (import)	Methylobacterium nodulans	[427]
D-Glucosamine (Glucosamine)	Consumption (import)	Bacteroides eggerthii	[279]
D-Glucosamine (Glucosamine)	Consumption (import)	Bacteroides fragilis	[279]
D-Glucosamine (Glucosamine)	Consumption (import)	Bacteroides ovatus	[204,279]
D-Glucosamine (Glucosamine)	Consumption (import)	Bacteroides thetaiotaomicron	[204,279]
D-Glucosamine (Glucosamine)	Consumption (import)	Bacteroides vulgatus	[279]
D-Glucosamine (Glucosamine)	Consumption (import)	Bifidobacterium animalis	[62]
D-Glucosamine (Glucosamine)	Consumption (import)	Bifidobacterium bifidum	[62]
D-Glucosamine (Glucosamine)	Consumption (import)	Bifidobacterium breve	[62,280]
D-Glucosamine (Glucosamine)	Consumption (import)	Bifidobacterium catenulatum	[62]
D-Glucosamine (Glucosamine)	Consumption (import)	Bifidobacterium dentium	[62]
D-Glucosamine (Glucosamine)	Consumption (import)	Bifidobacterium longum (Bifidobacterium infantis, Bifidobacterium suis)	[62]
D-Glucosamine (Glucosamine)	Consumption (import)	Bifidobacterium pseudocatenulatum	[62]
D-Glucosamine (Glucosamine)	Consumption (import)	Collinsella aerofaciens (Eubacterium aerofaciens)	[280]
D-Glucosamine (Glucosamine)	Consumption (import)	Colonocyte (host colon)	[336]
D-Glucosamine (Glucosamine)	Consumption (import)	Dorea longicatena	[333]
D-Glucosamine (Glucosamine)	Consumption (import)	Flavobacterium johnsoniae	[424]
D-Glucose (Glucose)	Consumption (import)	Acholeplasma laidlawii	[171]
D-Glucose (Glucose)	Consumption (import)	Achromobacter xylosoxidans	[254]
D-Glucose (Glucose)	Consumption (import)	Acidiphilium cryptum	[165]
D-Glucose (Glucose)	Consumption (import)	Acidovorax avenae	[360]
D-Glucose (Glucose)	Consumption (import)	Acidovorax delafieldii	[360]
D-Glucose (Glucose)	Consumption (import)	Actinobacillus succinogenes	[112]
D-Glucose (Glucose)	Consumption (import)	Aeromonas hydrophila	[2]
D-Glucose (Glucose)	Consumption (import)	Aeropyrum pernix	[303]
D-Glucose (Glucose)	Consumption (import)	Agrobacterium tumefaciens (Rhizobium radiobacter)	[339]
D-Glucose (Glucose)	Consumption (import)	Anaerococcus hydrogenalis	[90]
D-Glucose (Glucose)	Consumption (import)	Anaerococcus lactolyticus	[90]
D-Glucose (Glucose)	Consumption (import)	Anaerococcus prevotii	[90]
D-Glucose (Glucose)	Consumption (import)	Anaerococcus tetradius	[90]
D-Glucose (Glucose)	Consumption (import)	Anaerococcus vaginalis	[90]
D-Glucose (Glucose)	Consumption (import)	Anaerostipes caccae	[85]
D-Glucose (Glucose)	Consumption (import)	Anaerotruncus colihominis	[170]
D-Glucose (Glucose)	Consumption (import)	Archaeoglobus fulgidus	[303]
D-Glucose (Glucose)	Consumption (import)	Azotobacter vinelandii	[339]
D-Glucose (Glucose)	Consumption (import)	Bacteroides fragilis	[198,343]
D-Glucose (Glucose)	Consumption (import)	Bacteroides ovatus	[204]
D-Glucose (Glucose)	Consumption (import)	Bacteroides thetaiotaomicron	[11,118,198,204]
D-Glucose (Glucose)	Consumption (import)	Bacteroides xylanisolvens	[44]
D-Glucose (Glucose)	Consumption (import)	Bifidobacterium adolescentis	[266,345]
D-Glucose (Glucose)	Consumption (import)	Bifidobacterium animalis	[266]
D-Glucose (Glucose)	Consumption (import)	Bifidobacterium bifidum	[155,266]
D-Glucose (Glucose)	Consumption (import)	Bifidobacterium breve	[266]
D-Glucose (Glucose)	Consumption (import)	Bifidobacterium longum (Bifidobacterium infantis, Bifidobacterium suis)	[68,266,345]
D-Glucose (Glucose)	Consumption (import)	Blautia hansenii	[181]
D-Glucose (Glucose)	Consumption (import)	Blautia hydrogenotrophica (Ruminococcus hydrogenotrophicus)	[24]
D-Glucose (Glucose)	Consumption (import)	Buchnera aphidicola	[241]
D-Glucose (Glucose)	Consumption (import)	Butyrivibrio fibrisolvens	[205,217,249]
D-Glucose (Glucose)	Consumption (import)	Butyrivibrio proteoclasticus	[152,217]
D-Glucose (Glucose)	Consumption (import)	Catenibacterium mitsuokai	[146]
D-Glucose (Glucose)	Consumption (import)	Clostridium acetobutylicum	[212,278]
D-Glucose (Glucose)	Consumption (import)	Clostridium beijerinckii	[175,212,216]
D-Glucose (Glucose)	Consumption (import)	Clostridium botulinum	[212]
D-Glucose (Glucose)	Consumption (import)	Clostridium butyricum	[212,266]
D-Glucose (Glucose)	Consumption (import)	Clostridium cellulolyticum	[278]
D-Glucose (Glucose)	Consumption (import)	Clostridium difficile	[212,335]
D-Glucose (Glucose)	Consumption (import)	Clostridium sporogenes	[212]
D-Glucose (Glucose)	Consumption (import)	Clostridium thermocellum	[227]
D-Glucose (Glucose)	Consumption (import)	Collinsella aerofaciens (Eubacterium aerofaciens)	[333,145]
D-Glucose (Glucose)	Consumption (import)	Collinsella intestinalis	[145,145]
D-Glucose (Glucose)	Consumption (import)	Collinsella stercoris	[145]
D-Glucose (Glucose)	Consumption (import)	Colonocyte (host colon)	[100,226,336]
D-Glucose (Glucose)	Consumption (import)	Coprococcus comes	[124]
D-Glucose (Glucose)	Consumption (import)	Coprococcus eutactus	[82,124]
D-Glucose (Glucose)	Consumption (import)	Desulfovibrio piger	[88]
D-Glucose (Glucose)	Consumption (import)	Dorea formicigenerans	[333]
D-Glucose (Glucose)	Consumption (import)	Dorea longicatena	[333]
D-Glucose (Glucose)	Consumption (import)	Enterococcus faecalis (Streptococcus faecalis)	[166]
D-Glucose (Glucose)	Consumption (import)	Escherichia coli	[240,342]
D-Glucose (Glucose)	Consumption (import)	Eubacterium hallii	[85]
D-Glucose (Glucose)	Consumption (import)	Eubacterium limosum	[85]
D-Glucose (Glucose)	Consumption (import)	Eubacterium rectale	[199,301]
D-Glucose (Glucose)	Consumption (import)	Eubacterium siraeum	[49]
D-Glucose (Glucose)	Consumption (import)	Faecalibacterium prausnitzii	[82,128]
D-Glucose (Glucose)	Consumption (import)	Fibrobacter succinogenes (Bacteroides succinogenes)	[205,287]
D-Glucose (Glucose)	Consumption (import)	Flavobacterium johnsoniae	[424]
D-Glucose (Glucose)	Consumption (import)	Fusobacterium nucleatum	[182]
D-Glucose (Glucose)	Consumption (import)	Haemophilus influenzae	[126]
D-Glucose (Glucose)	Consumption (import)	Haemophilus parainfluenzae	[126]
D-Glucose (Glucose)	Consumption (import)	Haloarcula marismortui	[303]
D-Glucose (Glucose)	Consumption (import)	Halobacterium salinarum	[297]
D-Glucose (Glucose)	Consumption (import)	Haloferax volcanii	[6,297]
D-Glucose (Glucose)	Consumption (import)	Holdemania filiformis	[358,359]
D-Glucose (Glucose)	Consumption (import)	Klebsiella pneumoniae	[133]
D-Glucose (Glucose)	Consumption (import)	Lactobacillus acidophilus	[264]
D-Glucose (Glucose)	Consumption (import)	Lactobacillus amylovorus	[264]
D-Glucose (Glucose)	Consumption (import)	Lactobacillus gasseri	[264]
D-Glucose (Glucose)	Consumption (import)	Lactobacillus johnsonii	[264]
D-Glucose (Glucose)	Consumption (import)	Lactobacillus plantarum	[179]
D-Glucose (Glucose)	Consumption (import)	Leptotrichia buccalis	[338]
D-Glucose (Glucose)	Consumption (import)	Leptotrichia goodfellowii	[338]
D-Glucose (Glucose)	Consumption (import)	Leptotrichia hofstadii	[338]
D-Glucose (Glucose)	Consumption (import)	Leuconostoc mesenteroides	[154,339]
D-Glucose (Glucose)	Consumption (import)	Marvinbryantia formatexigens	[364]
D-Glucose (Glucose)	Consumption (import)	Megamonas hypermegale	[277]
D-Glucose (Glucose)	Consumption (import)	Megasphaera micronuciformis	[197]
D-Glucose (Glucose)	Consumption (import)	Methanocaldococcus jannaschii	[303]
D-Glucose (Glucose)	Consumption (import)	Odoribacter splanchnicus	[107]
D-Glucose (Glucose)	Consumption (import)	Parabacteroides distasonis	[276]
D-Glucose (Glucose)	Consumption (import)	Parabacteroides merdae	[276]
D-Glucose (Glucose)	Consumption (import)	Peptostreptococcus anaerobius	[90,307]
D-Glucose (Glucose)	Consumption (import)	Picrophilus torridus	[303]
D-Glucose (Glucose)	Consumption (import)	Prevotella copri	[116]
D-Glucose (Glucose)	Consumption (import)	Prevotella ruminicola (Bacteroides ruminicola)	[205,244]
D-Glucose (Glucose)	Consumption (import)	Propionibacterium acnes	[197]
D-Glucose (Glucose)	Consumption (import)	Propionibacterium freudenreichii (Propionibacterium shermanii)	[197]
D-Glucose (Glucose)	Consumption (import)	Pseudomonas aeruginosa	[339,344]
D-Glucose (Glucose)	Consumption (import)	Pseudomonas mendocina	[133]
D-Glucose (Glucose)	Consumption (import)	Pyrobaculum aerophilum	[303]
D-Glucose (Glucose)	Consumption (import)	Pyrococcus furiosus	[303]
D-Glucose (Glucose)	Consumption (import)	Pyrococcus horikoshii	[303]
D-Glucose (Glucose)	Consumption (import)	Ralstonia pickettii	[133]
D-Glucose (Glucose)	Consumption (import)	Roseburia intestinalis	[82,83]
D-Glucose (Glucose)	Consumption (import)	Ruminococcus albus	[168,205,318]
D-Glucose (Glucose)	Consumption (import)	Ruminococcus obeum	[181,326]
D-Glucose (Glucose)	Consumption (import)	Selenomonas artemidis	[197]
D-Glucose (Glucose)	Consumption (import)	Selenomonas flueggei	[197]
D-Glucose (Glucose)	Consumption (import)	Selenomonas noxia	[197]
D-Glucose (Glucose)	Consumption (import)	Selenomonas sputigena	[197]
D-Glucose (Glucose)	Consumption (import)	Shigella boydii	[365]
D-Glucose (Glucose)	Consumption (import)	Sodalis glossinidius	[309]
D-Glucose (Glucose)	Consumption (import)	Streptococcus bovis (Streptococcus equinus)	[205]
D-Glucose (Glucose)	Consumption (import)	Streptococcus gordonii	[141]
D-Glucose (Glucose)	Consumption (import)	Streptococcus mutans	[187,205]
D-Glucose (Glucose)	Consumption (import)	Subdoligranulum variabile	[128]
D-Glucose (Glucose)	Consumption (import)	Sulfolobus acidocaldarius	[284]
D-Glucose (Glucose)	Consumption (import)	Sulfolobus solfataricus	[6,7,284,303]
D-Glucose (Glucose)	Consumption (import)	Thermococcus barophilus	[303]
D-Glucose (Glucose)	Consumption (import)	Thermococcus gammatolerans	[303]
D-Glucose (Glucose)	Consumption (import)	Thermococcus kodakaraensis	[303]
D-Glucose (Glucose)	Consumption (import)	Thermococcus onnurineus	[303]
D-Glucose (Glucose)	Consumption (import)	Thermococcus sibiricus	[303]
D-Glucose (Glucose)	Consumption (import)	Thermoplasma acidophilum	[303]
D-Glucose (Glucose)	Consumption (import)	Thermotoga maritima	[219]
D-Glucose (Glucose)	Consumption (import)	Xanthomonas campestris	[331]
D-Glucose (Glucose)	Consumption (import)	Zymomonas mobilis	[205,339]
D-Glucuronic acid (D-Glucuronate)	Consumption (import)	Actinobacillus succinogenes	[112]
D-Glucuronic acid (D-Glucuronate)	Consumption (import)	Bacteroides eggerthii	[279]
D-Glucuronic acid (D-Glucuronate)	Consumption (import)	Bacteroides fragilis	[279]
D-Glucuronic acid (D-Glucuronate)	Consumption (import)	Bacteroides ovatus	[204,279]
D-Glucuronic acid (D-Glucuronate)	Consumption (import)	Bacteroides thetaiotaomicron	[204,279]
D-Glucuronic acid (D-Glucuronate)	Consumption (import)	Bacteroides vulgatus	[279]
D-Glucuronic acid (D-Glucuronate)	Consumption (import)	Bifidobacterium longum (Bifidobacterium infantis, Bifidobacterium suis)	[62]
D-Glucuronic acid (D-Glucuronate)	Consumption (import)	Butyrivibrio proteoclasticus	[152]
D-Glucuronic acid (D-Glucuronate)	Consumption (import)	Escherichia coli	[29,240]
D-Glucuronic acid (D-Glucuronate)	Consumption (import)	Methylobacterium nodulans	[427]
D-Lyxose (L-Lyxose)	Consumption (import)	Bacteroides thetaiotaomicron	[301]
D-Lyxose (L-Lyxose)	Consumption (import)	Colonocyte (host colon)	[336]
D-Lyxose (L-Lyxose)	Consumption (import)	Methylobacterium nodulans	[427]
D-Mannitol (Mannitol)	Consumption (import)	Acidovorax avenae	[360]
D-Mannitol (Mannitol)	Consumption (import)	Acidovorax delafieldii	[360]
D-Mannitol (Mannitol)	Consumption (import)	Actinobacillus succinogenes	[112]
D-Mannitol (Mannitol)	Consumption (import)	Aeromicrobium marinum	[36]
D-Mannitol (Mannitol)	Consumption (import)	Bacteroides xylanisolvens	[44]
D-Mannitol (Mannitol)	Consumption (import)	Bifidobacterium bifidum	[155]
D-Mannitol (Mannitol)	Consumption (import)	Clostridium difficile	[335]
D-Mannitol (Mannitol)	Consumption (import)	Coprococcus catus	[124]
D-Mannitol (Mannitol)	Consumption (import)	Holdemania filiformis	[358]
D-Mannitol (Mannitol)	Consumption (import)	Lactobacillus acidophilus	[398]
D-Mannitol (Mannitol)	Consumption (import)	Lactobacillus casei	[398]
D-Mannitol (Mannitol)	Consumption (import)	Lactobacillus delbrueckii	[397]
D-Mannitol (Mannitol)	Consumption (import) & production (export)	Lactobacillus fermentum	[398,399]
D-Mannitol (Mannitol)	Consumption (import)	Lactobacillus gasseri	[398]
D-Mannitol (Mannitol)	Consumption (import)	Lactobacillus paracasei	[398]
D-Mannitol (Mannitol)	Consumption (import)	Lactobacillus plantarum	[381]
D-Mannitol (Mannitol)	Production (export)	Lactobacillus reuteri	[399]
D-Mannitol (Mannitol)	Consumption (import)	Lactobacillus rhamnosus	[381]
D-Mannitol (Mannitol)	Consumption (import)	Lactobacillus salivarius	[398]
D-Mannitol (Mannitol)	Consumption (import)	Mycobacterium smegmatis	[50]
D-Mannitol (Mannitol)	Consumption (import)	Shigella boydii	[365]
D-Mannitol (Mannitol)	Consumption (import)	Streptococcus agalactiae	[238]
D-Mannitol (Mannitol)	Consumption (import)	Streptococcus anginosus	[238]
D-Mannitol (Mannitol)	Consumption (import)	Streptococcus australis	[238]
D-Mannitol (Mannitol)	Consumption (import)	Streptococcus bovis (Streptococcus equinus)	[238]
D-Mannitol (Mannitol)	Consumption (import)	Streptococcus cristatus	[238]
D-Mannitol (Mannitol)	Consumption (import)	Streptococcus downei	[238]
D-Mannitol (Mannitol)	Consumption (import)	Streptococcus dysgalactiae	[238]
D-Mannitol (Mannitol)	Consumption (import)	Streptococcus equi	[238]
D-Mannitol (Mannitol)	Consumption (import)	Streptococcus gallolyticus	[238]
D-Mannitol (Mannitol)	Consumption (import)	Streptococcus gordonii	[238]
D-Mannitol (Mannitol)	Consumption (import)	Streptococcus infantarius	[238]
D-Mannitol (Mannitol)	Consumption (import)	Streptococcus infantis	[238]
D-Mannitol (Mannitol)	Consumption (import)	Streptococcus mitis	[238]
D-Mannitol (Mannitol)	Consumption (import)	Streptococcus mutans	[238]
D-Mannitol (Mannitol)	Consumption (import)	Streptococcus oralis	[238]
D-Mannitol (Mannitol)	Consumption (import)	Streptococcus parasanguinis	[238]
D-Mannitol (Mannitol)	Consumption (import)	Streptococcus peroris	[238]
D-Mannitol (Mannitol)	Consumption (import)	Streptococcus pneumoniae	[238]
D-Mannitol (Mannitol)	Consumption (import)	Streptococcus pseudoporcinus	[238]
D-Mannitol (Mannitol)	Consumption (import)	Streptococcus pyogenes	[238]
D-Mannitol (Mannitol)	Consumption (import)	Streptococcus salivarius	[238]
D-Mannitol (Mannitol)	Consumption (import)	Streptococcus sanguinis	[238]
D-Mannitol (Mannitol)	Consumption (import)	Streptococcus suis	[238]
D-Mannitol (Mannitol)	Consumption (import)	Streptococcus thermophilus	[238]
D-Mannitol (Mannitol)	Consumption (import)	Streptococcus uberis	[238]
D-Mannitol (Mannitol)	Consumption (import)	Streptococcus vestibularis	[238]
D-Mannose (Mannose)	Consumption (import)	Achromobacter xylosoxidans	[254]
D-Mannose (Mannose)	Consumption (import)	Acidovorax delafieldii	[360]
D-Mannose (Mannose)	Consumption (import)	Alistipes shahii	[310]
D-Mannose (Mannose)	Consumption (import)	Anaerococcus hydrogenalis	[90]
D-Mannose (Mannose)	Consumption (import)	Anaerococcus lactolyticus	[90]
D-Mannose (Mannose)	Consumption (import)	Anaerococcus prevotii	[90]
D-Mannose (Mannose)	Consumption (import)	Anaerococcus tetradius	[90]
D-Mannose (Mannose)	Consumption (import)	Anaerococcus vaginalis	[90]
D-Mannose (Mannose)	Consumption (import)	Anaerotruncus colihominis	[170]
D-Mannose (Mannose)	Consumption (import)	Bacteroides ovatus	[204]
D-Mannose (Mannose)	Consumption (import)	Bacteroides thetaiotaomicron	[11,118,198,204]
D-Mannose (Mannose)	Consumption (import)	Bacteroides xylanisolvens	[44]
D-Mannose (Mannose)	Consumption (import)	Baumannia cicadellinicola	[368]
D-Mannose (Mannose)	Consumption (import)	Blautia hydrogenotrophica (Ruminococcus hydrogenotrophicus)	[24]
D-Mannose (Mannose)	Consumption (import)	Butyrivibrio fibrisolvens	[217]
D-Mannose (Mannose)	Consumption (import)	Butyrivibrio proteoclasticus	[217]
D-Mannose (Mannose)	Consumption (import)	Catenibacterium mitsuokai	[146]
D-Mannose (Mannose)	Consumption (import)	Clostridium acetobutylicum	[278]
D-Mannose (Mannose)	Consumption (import)	Collinsella aerofaciens (Eubacterium aerofaciens)	[333]
D-Mannose (Mannose)	Consumption (import)	Collinsella intestinalis	[145]
D-Mannose (Mannose)	Consumption (import)	Colonocyte (host colon)	[336]
D-Mannose (Mannose)	Consumption (import)	Coprococcus eutactus	[124]
D-Mannose (Mannose)	Consumption (import)	Flavobacterium johnsoniae	[424]
D-Mannose (Mannose)	Consumption (import)	Holdemania filiformis	[358]
D-Mannose (Mannose)	Consumption (import)	Lactobacillus acidophilus	[264]
D-Mannose (Mannose)	Consumption (import)	Leptotrichia buccalis	[87]
D-Mannose (Mannose)	Consumption (import)	Leptotrichia goodfellowii	[87]
D-Mannose (Mannose)	Consumption (import)	Marvinbryantia formatexigens	[364]
D-Mannose (Mannose)	Consumption (import)	Megamonas hypermegale	[277]
D-Mannose (Mannose)	Consumption (import)	Odoribacter splanchnicus	[107]
D-Mannose (Mannose)	Consumption (import)	Parabacteroides distasonis	[276]
D-Mannose (Mannose)	Consumption (import)	Parabacteroides merdae	[276]
D-Mannose (Mannose)	Consumption (import)	Peptostreptococcus anaerobius	[90]
D-Mannose (Mannose)	Consumption (import)	Ruminococcus obeum	[181]
D-Mannose (Mannose)	Consumption (import)	Shigella boydii	[365]
D-Mannose (Mannose)	Consumption (import)	Subdoligranulum variabile	[128]
D-Mannose (Mannose)	Consumption (import)	Sulfolobus solfataricus	[7]
D-Psicose	Consumption (import)	Bacteroides ovatus	[393]
D-Psicose	Consumption (import)	Bacteroides thetaiotaomicron	[238]
D-Psicose	Consumption (import)	Bacteroides uniformis	[238]
D-Psicose	Consumption (import)	Bacteroides xylanisolvens	[393]
D-Psicose	Consumption (import)	Bifidobacterium adolescentis	[238]
D-Psicose	Consumption (import)	Bifidobacterium angulatum	[238]
D-Psicose	Consumption (import)	Bifidobacterium animalis	[238]
D-Psicose	Consumption (import)	Bifidobacterium bifidum	[238]
D-Psicose	Consumption (import)	Bifidobacterium breve	[238]
D-Psicose	Consumption (import)	Bifidobacterium catenulatum	[238]
D-Psicose	Consumption (import)	Bifidobacterium dentium	[238,238]
D-Psicose	Consumption (import)	Bifidobacterium gallicum	[238]
D-Psicose	Consumption (import)	Bifidobacterium longum (Bifidobacterium infantis, Bifidobacterium suis)	[238,238]
D-Psicose	Consumption (import)	Bifidobacterium pseudocatenulatum	[238]
D-Psicose	Consumption (import)	Ruminococcus albus	[238]
D-Psicose	Consumption (import)	Ruminococcus bromii	[238]
D-Psicose	Consumption (import)	Ruminococcus flavefaciens	[238]
D-Psicose	Consumption (import)	Ruminococcus gnavus	[238]
D-Psicose	Consumption (import)	Ruminococcus lactaris	[238]
D-Psicose	Consumption (import)	Ruminococcus obeum	[238]
D-Psicose	Consumption (import)	Ruminococcus torques	[238]
D-Ribose (Ribose)	Consumption (import)	Acidovorax avenae	[360]
D-Ribose (Ribose)	Consumption (import)	Acidovorax delafieldii	[360]
D-Ribose (Ribose)	Consumption (import)	Bacteroides ovatus	[204]
D-Ribose (Ribose)	Consumption (import)	Bacteroides thetaiotaomicron	[204]
D-Ribose (Ribose)	Consumption (import)	Bifidobacterium breve	[246,247]
D-Ribose (Ribose)	Consumption (import)	Collinsella aerofaciens (Eubacterium aerofaciens)	[145]
D-Ribose (Ribose)	Consumption (import)	Collinsella intestinalis	[145]
D-Ribose (Ribose)	Consumption (import)	Colonocyte (host colon)	[336]
D-Ribose (Ribose)	Consumption (import)	Enterococcus faecalis (Streptococcus faecalis)	[166]
D-Ribose (Ribose)	Consumption (import)	Escherichia coli	[6,29]
D-Ribose (Ribose)	Consumption (import)	Holdemania filiformis	[358]
D-Ribose (Ribose)	Consumption (import)	Methylobacterium nodulans	[427]
D-Sorbitol (D-Glucitol, Sorbitol, Glucitol, L-Sorbitol, Sorbitol)	Consumption (import)	Acidovorax avenae	[360]
D-Sorbitol (D-Glucitol, Sorbitol, Glucitol, L-Sorbitol, Sorbitol)	Consumption (import)	Acidovorax delafieldii	[360]
D-Sorbitol (D-Glucitol, Sorbitol, Glucitol, L-Sorbitol, Sorbitol)	Consumption (import)	Actinobacillus succinogenes	[112]
D-Sorbitol (D-Glucitol, Sorbitol, Glucitol, L-Sorbitol, Sorbitol)	Consumption (import)	Aeromonas salmonicida	[2]
D-Sorbitol (D-Glucitol, Sorbitol, Glucitol, L-Sorbitol, Sorbitol)	Consumption (import)	Bacteroides xylanisolvens	[44]
D-Sorbitol (D-Glucitol, Sorbitol, Glucitol, L-Sorbitol, Sorbitol)	Consumption (import)	Clostridium difficile	[335]
D-Sorbitol (D-Glucitol, Sorbitol, Glucitol, L-Sorbitol, Sorbitol)	Consumption (import)	Colonocyte (host colon)	[336]
D-Sorbitol (D-Glucitol, Sorbitol, Glucitol, L-Sorbitol, Sorbitol)	Consumption (import)	Dorea longicatena	[333]
D-Sorbitol (D-Glucitol, Sorbitol, Glucitol, L-Sorbitol, Sorbitol)	Consumption (import)	Holdemania filiformis	[358]
D-Sorbitol (D-Glucitol, Sorbitol, Glucitol, L-Sorbitol, Sorbitol)	Consumption (import)	Salmonella enterica	[238]
D-Sorbitol (D-Glucitol, Sorbitol, Glucitol, L-Sorbitol, Sorbitol)	Consumption (import)	Shigella boydii	[365,238]
D-Sorbitol (D-Glucitol, Sorbitol, Glucitol, L-Sorbitol, Sorbitol)	Consumption (import)	Shigella dysenteriae	[238]
D-Sorbitol (D-Glucitol, Sorbitol, Glucitol, L-Sorbitol, Sorbitol)	Consumption (import)	Shigella flexneri	[238]
D-Sorbitol (D-Glucitol, Sorbitol, Glucitol, L-Sorbitol, Sorbitol)	Consumption (import)	Shigella sonnei	[238]
D-Tagatose	Consumption (import)	Enterococcus casseliflavus	[238]
D-Tagatose	Consumption (import)	Enterococcus faecalis (Streptococcus faecalis)	[238]
D-Tagatose	Consumption (import)	Enterococcus faecium (Streptococcus faecium)	[238]
D-Tagatose	Consumption (import)	Enterococcus gallinarum	[238]
D-Tagatose	Consumption (import)	Enterococcus italicus	[238]
D-Tagatose	Consumption (import)	Lactobacillus casei	[400]
D-Tagatose	Consumption (import)	Lactobacillus fermentum	[400]
D-Tagatose	Consumption (import)	Lactobacillus helveticus	[400]
D-Tagatose	Consumption (import)	Lactobacillus paracasei	[400]
D-Tagatose	Consumption (import)	Lactobacillus rhamnosus	[400]
D-Tagaturonate	Consumption (import)	Escherichia coli	[240]
D-Turanose	Consumption (import)	Anaerotruncus colihominis	[170]
D-Turanose	Consumption (import)	Leptotrichia buccalis	[338]
D-Turanose	Consumption (import)	Leptotrichia hofstadii	[338]
D-Turanose	Consumption (import)	Subdoligranulum variabile	[128]
D-Xylose (Xylose)	Consumption (import)	Achromobacter xylosoxidans	[254]
D-Xylose (Xylose)	Consumption (import)	Actinobacillus succinogenes	[112]
D-Xylose (Xylose)	Consumption (import)	Bacteroides ovatus	[204]
D-Xylose (Xylose)	Consumption (import)	Bacteroides thetaiotaomicron	[11,204]
D-Xylose (Xylose)	Consumption (import)	Bacteroides xylanisolvens	[44]
D-Xylose (Xylose)	Consumption (import)	Bifidobacterium longum (Bifidobacterium infantis, Bifidobacterium suis)	[345]
D-Xylose (Xylose)	Consumption (import)	Butyrivibrio fibrisolvens	[217,351]
D-Xylose (Xylose)	Consumption (import)	Butyrivibrio proteoclasticus	[152,217]
D-Xylose (Xylose)	Consumption (import)	Clostridium acetobutylicum	[278]
D-Xylose (Xylose)	Consumption (import)	Colonocyte (host colon)	[336]
D-Xylose (Xylose)	Consumption (import)	Coprococcus comes	[124]
D-Xylose (Xylose)	Consumption (import)	Dorea longicatena	[333]
D-Xylose (Xylose)	Consumption (import)	Flavobacterium johnsoniae	[424]
D-Xylose (Xylose)	Consumption (import)	Haloferax volcanii	[284]
D-Xylose (Xylose)	Consumption (import)	Holdemania filiformis	[358]
D-Xylose (Xylose)	Consumption (import)	Klebsiella pneumoniae	[178]
D-Xylose (Xylose)	Consumption (import)	Marvinbryantia formatexigens	[256,364]
D-Xylose (Xylose)	Consumption (import)	Megamonas hypermegale	[277]
D-Xylose (Xylose)	Consumption (import)	Methylobacterium nodulans	[427]
D-Xylose (Xylose)	Consumption (import)	Parabacteroides distasonis	[276]
D-Xylose (Xylose)	Consumption (import)	Parabacteroides merdae	[276]
D-Xylose (Xylose)	Consumption (import)	Prevotella copri	[116]
D-Xylose (Xylose)	Consumption (import)	Prevotella ruminicola (Bacteroides ruminicola)	[205]
D-Xylose (Xylose)	Consumption (import)	Roseburia intestinalis	[83]
D-Xylose (Xylose)	Consumption (import)	Ruminococcus obeum	[181]
D-Xylose (Xylose)	Consumption (import)	Shigella boydii	[365]
D-Xylose (Xylose)	Consumption (import)	Sulfolobus acidocaldarius	[284]
D-Xylose (Xylose)	Consumption (import)	Sulfolobus solfataricus	[284]
D-Xylulose (Xylulose, L-Xylulose)	Consumption (import)	Mycobacterium smegmatis	[50]
Deoxycholic acid	Production (export)	Bacteroides fragilis	[29,257]
Deoxycholic acid	Production (export)	Bacteroides thetaiotaomicron	[29]
Deoxycholic acid	Production (export)	Bacteroides vulgatus	[257]
Deoxycholic acid	Production (export)	Bifidobacterium adolescentis	[29,330]
Deoxycholic acid	Production (export)	Bifidobacterium animalis	[330]
Deoxycholic acid	Production (export)	Bifidobacterium bifidum	[29,257,330]
Deoxycholic acid	Production (export)	Bifidobacterium breve	[330]
Deoxycholic acid	Production (export)	Bifidobacterium longum (Bifidobacterium infantis, Bifidobacterium suis)	[29,257,330]
Deoxycholic acid	Production (export)	Bilophila wadsworthia	[75]
Deoxycholic acid	Production (export)	Clostridium hiranonis	[208,257]
Deoxycholic acid	Production (export)	Clostridium hylemonae	[208]
Deoxycholic acid	Production (export)	Clostridium leptum	[29,98,208]
Deoxycholic acid	Production (export)	Clostridium perfringens	[29,257]
Deoxycholic acid	Production (export)	Clostridium scindens	[29,98,208,257]
Deoxycholic acid	Production (export)	Lactobacillus acidophilus	[16,330]
Deoxycholic acid	Production (export)	Lactobacillus brevis	[330]
Deoxycholic acid	Production (export)	Lactobacillus buchneri	[330]
Deoxycholic acid	Production (export)	Lactobacillus gasseri	[16,330]
Deoxycholic acid	Production (export)	Lactobacillus hilgardii	[330]
Deoxycholic acid	Production (export)	Lactobacillus johnsonii	[16,29,257,330]
Deoxycholic acid	Production (export)	Lactobacillus plantarum	[16,29,257,330]
Deoxycholic acid	Production (export)	Listeria monocytogenes	[16,17,257]
Dextrin (Maltotriose, Maltodextrin, Maltohexaose, Maltotetraose, Maltooligosaccharide)	Consumption (import)	Anaerotruncus colihominis	[170]
Dextrin (Maltotriose, Maltodextrin, Maltohexaose, Maltotetraose, Maltooligosaccharide)	Consumption (import)	Bacteroides caccae	[391]
Dextrin (Maltotriose, Maltodextrin, Maltohexaose, Maltotetraose, Maltooligosaccharide)	Consumption (import)	Bacteroides fragilis	[392]
Dextrin (Maltotriose, Maltodextrin, Maltohexaose, Maltotetraose, Maltooligosaccharide)	Consumption (import)	Bacteroides ovatus	[392]
Dextrin (Maltotriose, Maltodextrin, Maltohexaose, Maltotetraose, Maltooligosaccharide)	Consumption (import)	Bacteroides stercoris	[391]
Dextrin (Maltotriose, Maltodextrin, Maltohexaose, Maltotetraose, Maltooligosaccharide)	Consumption (import)	Bacteroides thetaiotaomicron	[118,301]
Dextrin (Maltotriose, Maltodextrin, Maltohexaose, Maltotetraose, Maltooligosaccharide)	Consumption (import)	Bacteroides vulgatus	[392]
Dextrin (Maltotriose, Maltodextrin, Maltohexaose, Maltotetraose, Maltooligosaccharide)	Consumption (import)	Bifidobacterium adolescentis	[345]
Dextrin (Maltotriose, Maltodextrin, Maltohexaose, Maltotetraose, Maltooligosaccharide)	Consumption (import)	Bifidobacterium breve	[104]
Dextrin (Maltotriose, Maltodextrin, Maltohexaose, Maltotetraose, Maltooligosaccharide)	Consumption (import)	Bifidobacterium longum (Bifidobacterium infantis, Bifidobacterium suis)	[104,147,345]
Dextrin (Maltotriose, Maltodextrin, Maltohexaose, Maltotetraose, Maltooligosaccharide)	Consumption (import)	Bifidobacterium pseudocatenulatum	[104]
Dextrin (Maltotriose, Maltodextrin, Maltohexaose, Maltotetraose, Maltooligosaccharide)	Consumption (import)	Butyrivibrio crossotus	[217]
Dextrin (Maltotriose, Maltodextrin, Maltohexaose, Maltotetraose, Maltooligosaccharide)	Consumption (import)	Butyrivibrio fibrisolvens	[217]
Dextrin (Maltotriose, Maltodextrin, Maltohexaose, Maltotetraose, Maltooligosaccharide)	Consumption (import)	Butyrivibrio proteoclasticus	[217]
Dextrin (Maltotriose, Maltodextrin, Maltohexaose, Maltotetraose, Maltooligosaccharide)	Consumption (import)	Clostridium acetobutylicum	[104]
Dextrin (Maltotriose, Maltodextrin, Maltohexaose, Maltotetraose, Maltooligosaccharide)	Consumption (import)	Clostridium asparagiforme	[104]
Dextrin (Maltotriose, Maltodextrin, Maltohexaose, Maltotetraose, Maltooligosaccharide)	Consumption (import)	Clostridium bartlettii	[104]
Dextrin (Maltotriose, Maltodextrin, Maltohexaose, Maltotetraose, Maltooligosaccharide)	Consumption (import)	Clostridium beijerinckii	[104]
Dextrin (Maltotriose, Maltodextrin, Maltohexaose, Maltotetraose, Maltooligosaccharide)	Consumption (import)	Clostridium bolteae	[104]
Dextrin (Maltotriose, Maltodextrin, Maltohexaose, Maltotetraose, Maltooligosaccharide)	Consumption (import)	Clostridium botulinum	[104]
Dextrin (Maltotriose, Maltodextrin, Maltohexaose, Maltotetraose, Maltooligosaccharide)	Consumption (import)	Clostridium butyricum	[104]
Dextrin (Maltotriose, Maltodextrin, Maltohexaose, Maltotetraose, Maltooligosaccharide)	Consumption (import)	Clostridium carboxidivorans	[104]
Dextrin (Maltotriose, Maltodextrin, Maltohexaose, Maltotetraose, Maltooligosaccharide)	Consumption (import)	Clostridium cellulolyticum	[104]
Dextrin (Maltotriose, Maltodextrin, Maltohexaose, Maltotetraose, Maltooligosaccharide)	Consumption (import)	Clostridium cellulovorans	[104]
Dextrin (Maltotriose, Maltodextrin, Maltohexaose, Maltotetraose, Maltooligosaccharide)	Consumption (import)	Clostridium cf	[104]
Dextrin (Maltotriose, Maltodextrin, Maltohexaose, Maltotetraose, Maltooligosaccharide)	Consumption (import)	Clostridium difficile	[104]
Dextrin (Maltotriose, Maltodextrin, Maltohexaose, Maltotetraose, Maltooligosaccharide)	Consumption (import)	Clostridium hathewayi	[104]
Dextrin (Maltotriose, Maltodextrin, Maltohexaose, Maltotetraose, Maltooligosaccharide)	Consumption (import)	Clostridium hiranonis	[104]
Dextrin (Maltotriose, Maltodextrin, Maltohexaose, Maltotetraose, Maltooligosaccharide)	Consumption (import)	Clostridium hylemonae	[104]
Dextrin (Maltotriose, Maltodextrin, Maltohexaose, Maltotetraose, Maltooligosaccharide)	Consumption (import)	Clostridium kluyveri	[104]
Dextrin (Maltotriose, Maltodextrin, Maltohexaose, Maltotetraose, Maltooligosaccharide)	Consumption (import)	Clostridium leptum	[104]
Dextrin (Maltotriose, Maltodextrin, Maltohexaose, Maltotetraose, Maltooligosaccharide)	Consumption (import)	Clostridium ljungdahlii	[104]
Dextrin (Maltotriose, Maltodextrin, Maltohexaose, Maltotetraose, Maltooligosaccharide)	Consumption (import)	Clostridium methylpentosum	[104]
Dextrin (Maltotriose, Maltodextrin, Maltohexaose, Maltotetraose, Maltooligosaccharide)	Consumption (import)	Clostridium nexile	[104]
Dextrin (Maltotriose, Maltodextrin, Maltohexaose, Maltotetraose, Maltooligosaccharide)	Consumption (import)	Clostridium novyi	[104]
Dextrin (Maltotriose, Maltodextrin, Maltohexaose, Maltotetraose, Maltooligosaccharide)	Consumption (import)	Clostridium papyrosolvens	[104]
Dextrin (Maltotriose, Maltodextrin, Maltohexaose, Maltotetraose, Maltooligosaccharide)	Consumption (import)	Clostridium perfringens	[104]
Dextrin (Maltotriose, Maltodextrin, Maltohexaose, Maltotetraose, Maltooligosaccharide)	Consumption (import)	Clostridium phytofermentans	[104]
Dextrin (Maltotriose, Maltodextrin, Maltohexaose, Maltotetraose, Maltooligosaccharide)	Consumption (import)	Clostridium saccharolyticum	[104]
Dextrin (Maltotriose, Maltodextrin, Maltohexaose, Maltotetraose, Maltooligosaccharide)	Consumption (import)	Clostridium scindens	[104]
Dextrin (Maltotriose, Maltodextrin, Maltohexaose, Maltotetraose, Maltooligosaccharide)	Consumption (import)	Clostridium sporogenes	[104]
Dextrin (Maltotriose, Maltodextrin, Maltohexaose, Maltotetraose, Maltooligosaccharide)	Consumption (import)	Clostridium sticklandii	[104]
Dextrin (Maltotriose, Maltodextrin, Maltohexaose, Maltotetraose, Maltooligosaccharide)	Consumption (import)	Clostridium symbiosum	[104]
Dextrin (Maltotriose, Maltodextrin, Maltohexaose, Maltotetraose, Maltooligosaccharide)	Consumption (import)	Clostridium tetani	[104]
Dextrin (Maltotriose, Maltodextrin, Maltohexaose, Maltotetraose, Maltooligosaccharide)	Consumption (import)	Clostridium thermocellum	[104]
Dextrin (Maltotriose, Maltodextrin, Maltohexaose, Maltotetraose, Maltooligosaccharide)	Consumption (import)	Flavobacterium johnsoniae	[424]
Dextrin (Maltotriose, Maltodextrin, Maltohexaose, Maltotetraose, Maltooligosaccharide)	Consumption (import)	Lactobacillus acidophilus	[147]
Dextrin (Maltotriose, Maltodextrin, Maltohexaose, Maltotetraose, Maltooligosaccharide)	Consumption (import)	Lactobacillus brevis	[147]
Dextrin (Maltotriose, Maltodextrin, Maltohexaose, Maltotetraose, Maltooligosaccharide)	Consumption (import)	Lactobacillus casei	[147]
Dextrin (Maltotriose, Maltodextrin, Maltohexaose, Maltotetraose, Maltooligosaccharide)	Consumption (import)	Lactobacillus fermentum	[147]
Dextrin (Maltotriose, Maltodextrin, Maltohexaose, Maltotetraose, Maltooligosaccharide)	Consumption (import)	Lactobacillus helveticus	[147]
Dextrin (Maltotriose, Maltodextrin, Maltohexaose, Maltotetraose, Maltooligosaccharide)	Consumption (import)	Lactobacillus plantarum	[147]
Dextrin (Maltotriose, Maltodextrin, Maltohexaose, Maltotetraose, Maltooligosaccharide)	Consumption (import)	Ruminococcus bromii	[371,371]
Dextrin (Maltotriose, Maltodextrin, Maltohexaose, Maltotetraose, Maltooligosaccharide)	Consumption (import)	Subdoligranulum variabile	[128]
Dextrin (Maltotriose, Maltodextrin, Maltohexaose, Maltotetraose, Maltooligosaccharide)	Consumption (import)	Thermotoga maritima	[160]
Dichloromethane (Methylene chloride)	Consumption (import)	Methylobacterium extorquens (Methylobacterium chloromethanicum)	[51,51]
Dimethyl sulfide (Methyl sulfide)	Consumption (import)	Methanosarcina acetivorans	[20]
Dimethylamine	Production (export)	Bacteroides fragilis	[308]
Dimethylamine	Production (export)	Bacteroides ovatus	[308]
Dimethylamine	Production (export)	Bacteroides thetaiotaomicron	[308]
Dimethylamine	Production (export)	Bifidobacterium adolescentis	[308]
Dimethylamine	Production (export)	Bifidobacterium bifidum	[308]
Dimethylamine	Production (export)	Bifidobacterium longum (Bifidobacterium infantis, Bifidobacterium suis)	[308]
Dimethylamine	Production (export)	Clostridium perfringens	[308]
Dimethylamine	Production (export)	Escherichia coli	[308]
Dimethylamine	Production (export)	Faecalibacterium prausnitzii	[230]
Dimethylamine	Consumption (import)	Methanohalophilus mahii	[28]
Dimethylamine	Consumption (import)	Methanosarcina acetivorans	[28]
Dimethylamine	Consumption (import)	Methanosarcina barkeri	[28]
Dimethylamine	Consumption (import)	Methanosarcina mazei	[28]
Dimethylamine	Consumption (import)	Methanosphaera stadtmanae	[28]
DNA RNA Polynucleotide	Macromolecule degradation	Bacillus licheniformis	[299]
DNA RNA Polynucleotide	Macromolecule degradation	Bacillus megaterium	[12]
DNA RNA Polynucleotide	Macromolecule degradation	Bacillus pumilus	[12]
DNA RNA Polynucleotide	Macromolecule degradation	Bacillus subtilis	[38]
DNA RNA Polynucleotide	Macromolecule degradation	Brevibacillus brevis	[12]
DNA RNA Polynucleotide	Macromolecule degradation	Fibrobacter succinogenes (Bacteroides succinogenes)	[351]
DNA RNA Polynucleotide	Macromolecule degradation	Prevotella bryantii	[3]
DNA RNA Polynucleotide	Macromolecule degradation	Prevotella ruminicola (Bacteroides ruminicola)	[351]
DNA RNA Polynucleotide	Macromolecule degradation	Pseudomonas putida	[12]
DNA RNA Polynucleotide	Macromolecule degradation	Shewanella putrefaciens (Pseudomonas putrefaciens)	[274]
DNA RNA Polynucleotide	Macromolecule degradation	Staphylococcus aureus	[8,15,299]
DNA RNA Polynucleotide	Macromolecule degradation	Staphylococcus lugdunensis	[299]
DNA RNA Polynucleotide	Macromolecule degradation	Stenotrophomonas maltophilia	[12]
DNA RNA Polynucleotide	Macromolecule degradation	Streptococcus anginosus	[299]
DNA RNA Polynucleotide	Macromolecule degradation	Streptococcus pneumoniae	[21]
DNA RNA Polynucleotide	Macromolecule degradation	Streptococcus salivarius	[299]
DNA RNA Polynucleotide	Macromolecule degradation	Vibrio cholerae	[3,21,30,296]
DNA RNA Polynucleotide	Macromolecule degradation	Vibrio vulnificus	[3,30]
Dodecanoate (Lauric acid, Laureate)	Consumption (import)	Syntrophomonas wolfei	[314]
Erythritol	Consumption (import)	Holdemania filiformis	[358]
Ethanol	Production (export)	Acetivibrio cellulolyticus	[237]
Ethanol	Consumption (import)	Acetobacter pasteurianus	[134]
Ethanol	Production (export)	Agrobacterium tumefaciens (Rhizobium radiobacter)	[339]
Ethanol	Production (export)	Azotobacter vinelandii	[339]
Ethanol	Production (export)	Bacteroides thetaiotaomicron	[118]
Ethanol	Production (export)	Bifidobacterium adolescentis	[91]
Ethanol	Production (export)	Bifidobacterium angulatum	[91]
Ethanol	Production (export)	Bifidobacterium animalis	[91]
Ethanol	Production (export)	Bifidobacterium bifidum	[155,91]
Ethanol	Production (export)	Bifidobacterium breve	[190,91]
Ethanol	Production (export)	Bifidobacterium catenulatum	[91]
Ethanol	Production (export)	Bifidobacterium dentium	[91]
Ethanol	Production (export)	Bifidobacterium gallicum	[91]
Ethanol	Production (export)	Bifidobacterium longum (Bifidobacterium infantis, Bifidobacterium suis)	[68,91,91,91]
Ethanol	Production (export)	Bifidobacterium pseudocatenulatum	[91]
Ethanol	Consumption (import)	Bilophila wadsworthia	[169]
Ethanol	Production (export)	Blautia hydrogenotrophica (Ruminococcus hydrogenotrophicus)	[24]
Ethanol	Production (export)	Clostridium acetobutylicum	[278,188,339]
Ethanol	Production (export)	Clostridium asparagiforme	[188,339]
Ethanol	Production (export)	Clostridium bartlettii	[188,339]
Ethanol	Production (export)	Clostridium beijerinckii	[48,216,188,339]
Ethanol	Production (export)	Clostridium bolteae	[188,339]
Ethanol	Production (export)	Clostridium botulinum	[188,339]
Ethanol	Production (export)	Clostridium butyricum	[188,339]
Ethanol	Production (export)	Clostridium carboxidivorans	[188,339]
Ethanol	Production (export)	Clostridium cellulolyticum	[239,278,188,339]
Ethanol	Production (export)	Clostridium cellulovorans	[188,339]
Ethanol	Production (export)	Clostridium cf	[188,339]
Ethanol	Production (export)	Clostridium difficile	[188,339]
Ethanol	Production (export)	Clostridium hathewayi	[188,339]
Ethanol	Production (export)	Clostridium hiranonis	[188,339]
Ethanol	Production (export)	Clostridium hylemonae	[188,339]
Ethanol	Consumption (import) & production (export)	Clostridium kluyveri	[42,294,318,319,188,339]
Ethanol	Production (export)	Clostridium leptum	[128,188,339]
Ethanol	Production (export)	Clostridium ljungdahlii	[188,339]
Ethanol	Production (export)	Clostridium methylpentosum	[188,339]
Ethanol	Production (export)	Clostridium nexile	[188,339]
Ethanol	Production (export)	Clostridium novyi	[188,339]
Ethanol	Production (export)	Clostridium papyrosolvens	[188,339]
Ethanol	Production (export)	Clostridium perfringens	[188,339]
Ethanol	Production (export)	Clostridium phytofermentans	[188,339]
Ethanol	Production (export)	Clostridium saccharolyticum	[188,339]
Ethanol	Production (export)	Clostridium scindens	[188,339]
Ethanol	Production (export)	Clostridium sporogenes	[188,339]
Ethanol	Production (export)	Clostridium sticklandii	[188,339]
Ethanol	Production (export)	Clostridium symbiosum	[188,339]
Ethanol	Production (export)	Clostridium tetani	[306,188,339]
Ethanol	Production (export)	Clostridium thermocellum	[188,339]
Ethanol	Production (export)	Collinsella aerofaciens (Eubacterium aerofaciens)	[145]
Ethanol	Production (export)	Collinsella intestinalis	[145]
Ethanol	Production (export)	Collinsella stercoris	[145]
Ethanol	Production (export)	Coprococcus eutactus	[124]
Ethanol	Consumption (import)	Desulfobulbus propionicus	[288,318]
Ethanol	Consumption (import)	Desulfotomaculum nigrificans	[135]
Ethanol	Consumption (import)	Desulfovibrio aespoeensis	[106,302,319]
Ethanol	Consumption (import)	Desulfovibrio desulfuricans	[106,302,319]
Ethanol	Consumption (import)	Desulfovibrio fructosovorans	[106,302,319]
Ethanol	Consumption (import)	Desulfovibrio magneticus	[106,302,319]
Ethanol	Consumption (import)	Desulfovibrio piger	[106,302,319]
Ethanol	Consumption (import)	Desulfovibrio salexigens	[106,302,319]
Ethanol	Consumption (import)	Desulfovibrio vulgaris	[157,302,106,302,319]
Ethanol	Production (export)	Dorea formicigenerans	[333]
Ethanol	Production (export)	Dorea longicatena	[333]
Ethanol	Production (export)	Escherichia albertii	[316]
Ethanol	Production (export)	Escherichia coli	[342,316]
Ethanol	Production (export)	Escherichia fergusonii	[316]
Ethanol	Consumption (import)	Eubacterium limosum	[319]
Ethanol	Production (export)	Eubacterium siraeum	[128]
Ethanol	Consumption (import)	Geobacter bemidjiensis	[302]
Ethanol	Consumption (import)	Geobacter lovleyi	[302]
Ethanol	Consumption (import)	Geobacter metallireducens	[186,222,302,327,302]
Ethanol	Consumption (import)	Geobacter sulfurreducens	[302]
Ethanol	Consumption (import)	Geobacter uraniumreducens	[302]
Ethanol	Production (export)	Klebsiella pneumoniae	[4]
Ethanol	Production (export)	Lactobacillus acidophilus	[316]
Ethanol	Production (export)	Lactobacillus amylolyticus	[316]
Ethanol	Production (export)	Lactobacillus amylovorus	[316]
Ethanol	Production (export)	Lactobacillus antri	[316]
Ethanol	Production (export)	Lactobacillus brevis	[316]
Ethanol	Production (export)	Lactobacillus buchneri	[234,316]
Ethanol	Production (export)	Lactobacillus casei	[316]
Ethanol	Production (export)	Lactobacillus coleohominis	[316]
Ethanol	Production (export)	Lactobacillus crispatus	[316]
Ethanol	Production (export)	Lactobacillus delbrueckii	[316]
Ethanol	Production (export)	Lactobacillus fermentum	[316]
Ethanol	Production (export)	Lactobacillus gasseri	[316]
Ethanol	Production (export)	Lactobacillus helveticus	[316]
Ethanol	Production (export)	Lactobacillus hilgardii	[316]
Ethanol	Production (export)	Lactobacillus iners	[316]
Ethanol	Production (export)	Lactobacillus jensenii	[316]
Ethanol	Production (export)	Lactobacillus johnsonii	[316]
Ethanol	Production (export)	Lactobacillus oris	[316]
Ethanol	Production (export)	Lactobacillus paracasei	[316]
Ethanol	Production (export)	Lactobacillus plantarum	[179,316]
Ethanol	Production (export)	Lactobacillus reuteri	[316]
Ethanol	Production (export)	Lactobacillus rhamnosus	[316]
Ethanol	Production (export)	Lactobacillus ruminis	[316]
Ethanol	Production (export)	Lactobacillus sakei	[316]
Ethanol	Production (export)	Lactobacillus salivarius	[316]
Ethanol	Production (export)	Lactobacillus ultunensis	[316]
Ethanol	Production (export)	Lactobacillus vaginalis	[316]
Ethanol	Production (export)	Lactococcus lactis	[63]
Ethanol	Production (export)	Leuconostoc citreum	[316]
Ethanol	Production (export)	Leuconostoc gasicomitatum	[316]
Ethanol	Production (export)	Leuconostoc kimchii	[316]
Ethanol	Production (export)	Leuconostoc mesenteroides	[339,316]
Ethanol	Consumption (import)	Methanobrevibacter smithii	[223,282]
Ethanol	Consumption (import)	Moorella thermoacetica	[81]
Ethanol	Consumption (import) & production (export)	Pelobacter carbinolicus	[5,289,302,302,327]
Ethanol	Consumption (import)	Pelobacter propionicus	[288,289,318]
Ethanol	Consumption (import)	Pelotomaculum thermopropionicum	[135,162,302]
Ethanol	Production (export)	Pseudomonas aeruginosa	[339]
Ethanol	Production (export)	Ruminococcus albus	[188,318]
Ethanol	Production (export)	Ruminococcus bromii	[350]
Ethanol	Production (export)	Ruminococcus torques	[124]
Ethanol	Production (export)	Streptococcus agalactiae	[339]
Ethanol	Production (export)	Streptococcus anginosus	[339]
Ethanol	Production (export)	Streptococcus australis	[339]
Ethanol	Production (export)	Streptococcus bovis (Streptococcus equinus)	[339]
Ethanol	Production (export)	Streptococcus cristatus	[339]
Ethanol	Production (export)	Streptococcus downei	[339]
Ethanol	Production (export)	Streptococcus dysgalactiae	[339]
Ethanol	Production (export)	Streptococcus equi	[339]
Ethanol	Production (export)	Streptococcus gallolyticus	[339]
Ethanol	Production (export)	Streptococcus gordonii	[339]
Ethanol	Production (export)	Streptococcus infantarius	[339]
Ethanol	Production (export)	Streptococcus infantis	[339]
Ethanol	Production (export)	Streptococcus mitis	[339]
Ethanol	Production (export)	Streptococcus mutans	[339]
Ethanol	Production (export)	Streptococcus oralis	[339]
Ethanol	Production (export)	Streptococcus parasanguinis	[339]
Ethanol	Production (export)	Streptococcus peroris	[339]
Ethanol	Production (export)	Streptococcus pneumoniae	[339]
Ethanol	Production (export)	Streptococcus pseudoporcinus	[339]
Ethanol	Production (export)	Streptococcus pyogenes	[339]
Ethanol	Production (export)	Streptococcus salivarius	[339]
Ethanol	Production (export)	Streptococcus sanguinis	[339]
Ethanol	Production (export)	Streptococcus suis	[339]
Ethanol	Production (export)	Streptococcus thermophilus	[339]
Ethanol	Production (export)	Streptococcus uberis	[339]
Ethanol	Production (export)	Streptococcus vestibularis	[339]
Ethanol	Consumption (import)	Syntrophobacter fumaroxidans	[162,302]
Ethanol	Consumption (import)	Syntrophobotulus glycolicus	[302]
Ethanol	Consumption (import)	Syntrophomonas wolfei	[162,302]
Ethanol	Consumption (import)	Syntrophothermus lipocalidus	[302]
Ethanol	Consumption (import)	Syntrophus aciditrophicus	[162,302]
Ethanol	Production (export)	Zymomonas mobilis	[339]
Ethanolamine (Phosphatidylethanolamine)	Consumption (import)	Acidovorax avenae	[360]
Ethanolamine (Phosphatidylethanolamine)	Consumption (import)	Klebsiella pneumoniae	[178]
Ethanolamine (Phosphatidylethanolamine)	Consumption (import)	Pelobacter carbinolicus	[5]
Folic acid (Folate, Vitamin B9)	Production (export)	Baumannia cicadellinicola	[207,368]
Folic acid (Folate, Vitamin B9)	Production (export)	Bifidobacterium adolescentis	[174,248,265,267]
Folic acid (Folate, Vitamin B9)	Consumption (import) & production (export)	Bifidobacterium animalis	[173,174,265,267]
Folic acid (Folate, Vitamin B9)	Production (export)	Bifidobacterium bifidum	[174,265,267,362]
Folic acid (Folate, Vitamin B9)	Production (export)	Bifidobacterium breve	[174,248,265,267,362]
Folic acid (Folate, Vitamin B9)	Production (export)	Bifidobacterium catenulatum	[265]
Folic acid (Folate, Vitamin B9)	Production (export)	Bifidobacterium dentium	[174,265,267]
Folic acid (Folate, Vitamin B9)	Production (export)	Bifidobacterium longum (Bifidobacterium infantis, Bifidobacterium suis)	[173,174,248,265,267,362]
Folic acid (Folate, Vitamin B9)	Production (export)	Bifidobacterium pseudocatenulatum	[248,265,267]
Folic acid (Folate, Vitamin B9)	Consumption (import)	Clostridium novyi	[89]
Folic acid (Folate, Vitamin B9)	Consumption (import)	Clostridium tetani	[242]
Folic acid (Folate, Vitamin B9)	Consumption (import)	Colonocyte (host colon)	[336]
Folic acid (Folate, Vitamin B9)	Production (export)	Enterococcus faecalis (Streptococcus faecalis)	[362]
Folic acid (Folate, Vitamin B9)	Production (export)	Escherichia coli	[362]
Folic acid (Folate, Vitamin B9)	Production (export)	Lactobacillus acidophilus	[173,251]
Folic acid (Folate, Vitamin B9)	Production (export)	Lactobacillus brevis	[130]
Folic acid (Folate, Vitamin B9)	Consumption (import) & production (export)	Lactobacillus casei	[89,120,120,242,248]
Folic acid (Folate, Vitamin B9)	Production (export)	Lactobacillus fermentum	[130]
Folic acid (Folate, Vitamin B9)	Consumption (import)	Lactobacillus gasseri	[173,173,357]
Folic acid (Folate, Vitamin B9)	Production (export)	Lactobacillus plantarum	[130,131,173,174,265,283]
Folic acid (Folate, Vitamin B9)	Production (export)	Lactobacillus reuteri	[130,173,283]
Folic acid (Folate, Vitamin B9)	Consumption (import) & production (export)	Lactococcus lactis	[89,173,248,265,357]
Folic acid (Folate, Vitamin B9)	Consumption (import)	Mycoplasma capricolum	[89]
Folic acid (Folate, Vitamin B9)	Consumption (import)	Streptococcus mutans	[89]
Folic acid (Folate, Vitamin B9)	Production (export)	Streptococcus thermophilus	[173,251,265]
Formaldehyde	Production (export)	Enterococcus faecalis (Streptococcus faecalis)	[33]
Formaldehyde	Production (export)	Escherichia coli	[33]
Formaldehyde	Production (export)	Klebsiella pneumoniae	[33]
Formaldehyde	Consumption (import)	Methylobacterium extorquens (Methylobacterium chloromethanicum)	[51]
Formaldehyde	Consumption (import)	Methylobacterium nodulans	[427]
Formaldehyde	Production (export)	Pseudomonas aeruginosa	[33]
Formaldehyde	Consumption (import)	Pseudomonas putida	[52]
Formaldehyde	Production (export)	Staphylococcus aureus	[33]
Formaldehyde	Production (export)	Streptococcus pneumoniae	[33]
Formate	Consumption (import)	Acetohalobium arabaticum	[233]
Formate	Production (export)	Anaerostipes caccae	[285]
Formate	Production (export)	Atopobium parvulum	[185]
Formate	Production (export)	Atopobium rimae	[185]
Formate	Production (export)	Atopobium vaginae	[185]
Formate	Production (export)	Bacteroides caccae	[394]
Formate	Production (export)	Bacteroides stercoris	[395]
Formate	Production (export)	Bacteroides thetaiotaomicron	[118,199,281]
Formate	Production (export)	Bacteroides vulgatus	[396]
Formate	Production (export)	Bifidobacterium adolescentis	[18,91,185]
Formate	Production (export)	Bifidobacterium angulatum	[18,91,185]
Formate	Production (export)	Bifidobacterium animalis	[18,91,185]
Formate	Production (export)	Bifidobacterium bifidum	[18,91,185]
Formate	Production (export)	Bifidobacterium breve	[190,18,91,185]
Formate	Production (export)	Bifidobacterium catenulatum	[18,91,185]
Formate	Production (export)	Bifidobacterium dentium	[18,91,185]
Formate	Production (export)	Bifidobacterium gallicum	[18,91,185]
Formate	Production (export)	Bifidobacterium longum (Bifidobacterium infantis, Bifidobacterium suis)	[68,91,18,91,185,18,91,185]
Formate	Production (export)	Bifidobacterium pseudocatenulatum	[18,91,185]
Formate	Consumption (import)	Bilophila wadsworthia	[169,304]
Formate	Consumption (import)	Blautia hydrogenotrophica (Ruminococcus hydrogenotrophicus)	[24]
Formate	Production (export)	Butyrivibrio crossotus	[366]
Formate	Production (export)	Butyrivibrio fibrisolvens	[366]
Formate	Production (export)	Butyrivibrio proteoclasticus	[152,366]
Formate	Consumption (import)	Campylobacter gracilis	[358]
Formate	Production (export)	Clostridium thermocellum	[315]
Formate	Production (export)	Collinsella aerofaciens (Eubacterium aerofaciens)	[255,145]
Formate	Production (export)	Collinsella intestinalis	[145]
Formate	Production (export)	Collinsella stercoris	[145]
Formate	Production (export)	Coprococcus eutactus	[124,326]
Formate	Consumption (import)	Desulfarculus baarsii	[291]
Formate	Production (export)	Desulfatibacillum alkenivorans	[302]
Formate	Consumption (import)	Desulfovibrio aespoeensis	[255,321,324]
Formate	Consumption (import)	Desulfovibrio desulfuricans	[255,321,324]
Formate	Consumption (import)	Desulfovibrio fructosovorans	[255,321,324]
Formate	Consumption (import)	Desulfovibrio magneticus	[255,321,324]
Formate	Consumption (import)	Desulfovibrio piger	[255,255,321,324]
Formate	Consumption (import)	Desulfovibrio salexigens	[255,321,324]
Formate	Consumption (import) & production (export)	Desulfovibrio vulgaris	[157,319,322,255,321,324]
Formate	Production (export)	Dorea formicigenerans	[333]
Formate	Production (export)	Dorea longicatena	[333]
Formate	Production (export)	Escherichia albertii	[316]
Formate	Production (export)	Escherichia coli	[339,342,316]
Formate	Production (export)	Escherichia fergusonii	[316]
Formate	Production (export)	Eubacterium cellulosolvens	[149,185]
Formate	Production (export)	Eubacterium eligens	[149,185]
Formate	Production (export)	Eubacterium hallii	[149,185]
Formate	Production (export)	Eubacterium limosum	[149,185]
Formate	Production (export)	Eubacterium rectale	[83,149,185]
Formate	Production (export)	Eubacterium saburreum	[149,185]
Formate	Production (export)	Eubacterium saphenum	[149,185]
Formate	Production (export)	Eubacterium siraeum	[149,185]
Formate	Production (export)	Eubacterium ventriosum	[149,185]
Formate	Production (export)	Faecalibacterium prausnitzii	[82,128,185]
Formate	Production (export)	Fibrobacter succinogenes (Bacteroides succinogenes)	[198,287]
Formate	Consumption (import)	Geobacter sulfurreducens	[327]
Formate	Consumption (import)	Klebsiella pneumoniae	[133]
Formate	Production (export)	Lactobacillus casei	[63]
Formate	Production (export)	Lactobacillus plantarum	[63,234]
Formate	Production (export)	Lactococcus lactis	[63]
Formate	Consumption (import)	Marvinbryantia formatexigens	[256,364]
Formate	Consumption (import)	Methanobrevibacter ruminantium	[168,366,180]
Formate	Consumption (import)	Methanobrevibacter smithii	[180,199,223,281,282,301,366,180]
Formate	Consumption (import)	Methanococcus aeolicus	[180]
Formate	Consumption (import)	Methanococcus maripaludis	[157,322,180]
Formate	Consumption (import)	Methanococcus vannielii	[28,180]
Formate	Consumption (import)	Methanococcus voltae	[180]
Formate	Consumption (import)	Methanocorpusculum labreanum	[180]
Formate	Consumption (import)	Methanoculleus marisnigri	[180]
Formate	Consumption (import)	Methanoplanus petrolearius	[180]
Formate	Production (export)	Methanosarcina acetivorans	[20,180]
Formate	Consumption (import)	Methanosphaerula palustris	[426]
Formate	Consumption (import)	Methanospirillum hungatei	[318,321,324,180]
Formate	Consumption (import)	Methanothermobacter marburgensis	[180]
Formate	Consumption (import)	Methanothermobacter thermautotrophicus	[135,180]
Formate	Consumption (import)	Methanothermococcus okinawensis	[180]
Formate	Consumption (import)	Methylobacillus flagellatus	[52]
Formate	Consumption (import)	Methylobacterium extorquens (Methylobacterium chloromethanicum)	[51,52]
Formate	Consumption (import)	Methylobacterium nodulans	[427]
Formate	Consumption (import)	Moorella thermoacetica	[81]
Formate	Production (export)	Oxalobacter formigenes	[27,29,164]
Formate	Production (export)	Pelobacter carbinolicus	[5]
Formate	Production (export)	Pelotomaculum thermopropionicum	[219,302]
Formate	Consumption (import)	Pseudomonas mendocina	[133]
Formate	Consumption (import)	Ralstonia pickettii	[133]
Formate	Production (export)	Rhodospirillum rubrum	[20]
Formate	Production (export)	Roseburia intestinalis	[82,83,185]
Formate	Production (export)	Roseburia inulinivorans	[185]
Formate	Production (export)	Ruminococcus bromii	[185]
Formate	Production (export)	Ruminococcus flavefaciens	[168,185,287]
Formate	Production (export)	Ruminococcus gnavus	[326]
Formate	Production (export)	Ruminococcus obeum	[326]
Formate	Production (export)	Ruminococcus torques	[124]
Formate	Production (export)	Salmonella enterica	[339]
Formate	Consumption (import)	Shewanella putrefaciens (Pseudomonas putrefaciens)	[186]
Formate	Production (export)	Shigella boydii	[339]
Formate	Production (export)	Shigella dysenteriae	[339]
Formate	Production (export)	Shigella flexneri	[339]
Formate	Production (export)	Shigella sonnei	[339]
Formate	Production (export)	Syntrophobacter fumaroxidans	[219,302]
Formate	Production (export)	Syntrophobotulus glycolicus	[302]
Formate	Production (export)	Syntrophomonas wolfei	[31,219,302]
Formate	Production (export)	Syntrophothermus lipocalidus	[302]
Formate	Production (export)	Syntrophus aciditrophicus	[302]
Formate	Production (export)	Vibrio cholerae	[339]
Formate	Consumption (import)	Wolinella succinogenes	[59,318]
FOS (Fructooligosaccharide)	Consumption (import)	Anaerostipes caccae	[293]
FOS (Fructooligosaccharide)	Consumption (import)	Bacteroides fragilis	[313]
FOS (Fructooligosaccharide)	Consumption (import)	Bacteroides ovatus	[161,204,313]
FOS (Fructooligosaccharide)	Consumption (import)	Bacteroides thetaiotaomicron	[204,293,313]
FOS (Fructooligosaccharide)	Consumption (import)	Bacteroides uniformis	[313]
FOS (Fructooligosaccharide)	Consumption (import)	Bifidobacterium adolescentis	[18,104,148,250,266,345]
FOS (Fructooligosaccharide)	Consumption (import)	Bifidobacterium animalis	[266]
FOS (Fructooligosaccharide)	Consumption (import)	Bifidobacterium bifidum	[250,266]
FOS (Fructooligosaccharide)	Consumption (import)	Bifidobacterium breve	[18,104,247,266,292]
FOS (Fructooligosaccharide)	Consumption (import)	Bifidobacterium longum (Bifidobacterium infantis, Bifidobacterium suis)	[18,104,148,250,266,292,293,345,348,354]
FOS (Fructooligosaccharide)	Consumption (import)	Bifidobacterium pseudocatenulatum	[18,104]
FOS (Fructooligosaccharide)	Consumption (import)	Butyrivibrio fibrisolvens	[217]
FOS (Fructooligosaccharide)	Consumption (import)	Butyrivibrio proteoclasticus	[217]
FOS (Fructooligosaccharide)	Consumption (import)	Clostridium butyricum	[266]
FOS (Fructooligosaccharide)	Consumption (import)	Coprococcus comes	[293]
FOS (Fructooligosaccharide)	Consumption (import)	Coprococcus eutactus	[293]
FOS (Fructooligosaccharide)	Consumption (import)	Dorea longicatena	[333]
FOS (Fructooligosaccharide)	Consumption (import)	Eubacterium rectale	[83,84,95,292,293]
FOS (Fructooligosaccharide)	Consumption (import)	Faecalibacterium prausnitzii	[95,161,184,250,292,293]
FOS (Fructooligosaccharide)	Consumption (import)	Fibrobacter succinogenes (Bacteroides succinogenes)	[326]
FOS (Fructooligosaccharide)	Consumption (import)	Lactobacillus acidophilus	[148]
FOS (Fructooligosaccharide)	Consumption (import)	Lactobacillus casei	[148]
FOS (Fructooligosaccharide)	Consumption (import)	Lactobacillus helveticus	[348]
FOS (Fructooligosaccharide)	Consumption (import)	Lactobacillus plantarum	[148,292]
FOS (Fructooligosaccharide)	Consumption (import)	Roseburia intestinalis	[84,293]
FOS (Fructooligosaccharide)	Consumption (import)	Roseburia inulinivorans	[95,184,292,293]
FOS (Fructooligosaccharide)	Consumption (import)	Ruminococcus bromii	[84]
Fructan (Inulin, Levan)	Macromolecule degradation	Bacteroides thetaiotaomicron	[204,281,292,311]
Fructan (Inulin, Levan)	Macromolecule degradation	Bifidobacterium adolescentis	[94,189]
Fructan (Inulin, Levan)	Macromolecule degradation	Bifidobacterium longum (Bifidobacterium infantis, Bifidobacterium suis)	[91]
Fructan (Inulin, Levan)	Macromolecule degradation	Roseburia intestinalis	[91]
Galactan	Macromolecule degradation	Bacteroides thetaiotaomicron	[161]
Galactan	Macromolecule degradation	Bifidobacterium breve	[247]
Galactitol (Dulcitol)	Consumption (import)	Gluconobacter oxydans	[200]
Galactitol (Dulcitol)	Consumption (import)	Mycobacterium smegmatis	[200]
Glycerol	Consumption (import)	Bacteroides xylanisolvens	[44]
Glycerol	Consumption (import)	Bilophila wadsworthia	[169]
Glycerol	Consumption (import)	Citrobacter koseri	[232]
Glycerol	Consumption (import)	Citrobacter rodentium	[232]
Glycerol	Consumption (import)	Citrobacter youngae	[232]
Glycerol	Consumption (import)	Clostridium butyricum	[5,294]
Glycerol	Consumption (import)	Colonocyte (host colon)	[336]
Glycerol	Consumption (import)	Desulfovibrio aespoeensis	[232]
Glycerol	Consumption (import)	Desulfovibrio desulfuricans	[232]
Glycerol	Consumption (import)	Desulfovibrio fructosovorans	[232]
Glycerol	Consumption (import)	Desulfovibrio magneticus	[232]
Glycerol	Consumption (import)	Desulfovibrio piger	[232]
Glycerol	Consumption (import)	Desulfovibrio salexigens	[232]
Glycerol	Consumption (import)	Desulfovibrio vulgaris	[232]
Glycerol	Consumption (import)	Ilyobacter polytropus	[232]
Glycerol	Consumption (import)	Klebsiella pneumoniae	[4,232]
Glycerol	Consumption (import)	Lactobacillus acidophilus	[376]
Glycerol	Consumption (import)	Lactobacillus brevis	[234,377,401]
Glycerol	Consumption (import)	Lactobacillus buchneri	[234,401]
Glycerol	Consumption (import)	Lactobacillus casei	[378]
Glycerol	Consumption (import)	Lactobacillus delbrueckii	[376]
Glycerol	Consumption (import)	Lactobacillus paracasei	[380]
Glycerol	Consumption (import)	Lactobacillus reuteri	[386]
Glycerol	Consumption (import)	Lactobacillus rhamnosus	[378]
Glycerol	Consumption (import)	Methylobacterium nodulans	[427]
Glycerol	Consumption (import)	Mycobacterium tuberculosis	[32]
Glycerol	Consumption (import)	Pelobacter carbinolicus	[5,232,232]
Glycerol	Consumption (import)	Pelobacter propionicus	[232]
Glycerol	Consumption (import)	Propionibacterium freudenreichii (Propionibacterium shermanii)	[163]
Glycerol	Consumption (import)	Shigella boydii	[365]
Glycochenodeoxycholate	Consumption (import)	Bacteroides fragilis	[257]
Glycochenodeoxycholate	Consumption (import)	Bifidobacterium adolescentis	[29,330]
Glycochenodeoxycholate	Consumption (import)	Bifidobacterium animalis	[330]
Glycochenodeoxycholate	Consumption (import)	Bifidobacterium bifidum	[29,257,330]
Glycochenodeoxycholate	Consumption (import)	Bifidobacterium breve	[330]
Glycochenodeoxycholate	Consumption (import)	Bifidobacterium longum (Bifidobacterium infantis, Bifidobacterium suis)	[29,257,330]
Glycochenodeoxycholate	Consumption (import)	Clostridium perfringens	[29,257]
Glycochenodeoxycholate	Production (export)	Hepatocyte (host liver)	—
Glycochenodeoxycholate	Consumption (import)	Lactobacillus acidophilus	[16,330]
Glycochenodeoxycholate	Consumption (import)	Lactobacillus brevis	[330]
Glycochenodeoxycholate	Consumption (import)	Lactobacillus buchneri	[330]
Glycochenodeoxycholate	Consumption (import)	Lactobacillus gasseri	[16,330]
Glycochenodeoxycholate	Consumption (import)	Lactobacillus hilgardii	[330]
Glycochenodeoxycholate	Consumption (import)	Lactobacillus johnsonii	[16,29,330]
Glycochenodeoxycholate	Consumption (import)	Lactobacillus plantarum	[16,29,257,330]
Glycochenodeoxycholate	Consumption (import)	Listeria monocytogenes	[16,17]
Glycocholate	Consumption (import)	Bacteroides fragilis	[257]
Glycocholate	Consumption (import)	Bifidobacterium adolescentis	[29,330]
Glycocholate	Consumption (import)	Bifidobacterium animalis	[330]
Glycocholate	Consumption (import)	Bifidobacterium bifidum	[29,257,330]
Glycocholate	Consumption (import)	Bifidobacterium breve	[330]
Glycocholate	Consumption (import)	Bifidobacterium longum (Bifidobacterium infantis, Bifidobacterium suis)	[29,257,330]
Glycocholate	Consumption (import)	Clostridium perfringens	[29,257]
Glycocholate	Production (export)	Hepatocyte (host liver)	—
Glycocholate	Consumption (import)	Lactobacillus acidophilus	[16,257,330]
Glycocholate	Consumption (import)	Lactobacillus brevis	[330]
Glycocholate	Consumption (import)	Lactobacillus buchneri	[330]
Glycocholate	Consumption (import)	Lactobacillus gasseri	[16,330]
Glycocholate	Consumption (import)	Lactobacillus hilgardii	[330]
Glycocholate	Consumption (import)	Lactobacillus johnsonii	[16,29,257,330]
Glycocholate	Consumption (import)	Lactobacillus plantarum	[16,29,257,330]
Glycocholate	Consumption (import)	Listeria monocytogenes	[16,17]
Glycocholate	Consumption (import)	Moorella thermoacetica	[81]
Glycodeoxycholate	Consumption (import)	Bacteroides fragilis	[257]
Glycodeoxycholate	Consumption (import)	Bifidobacterium adolescentis	[29,330]
Glycodeoxycholate	Consumption (import)	Bifidobacterium animalis	[330]
Glycodeoxycholate	Consumption (import)	Bifidobacterium bifidum	[29,257,330]
Glycodeoxycholate	Consumption (import)	Bifidobacterium breve	[330]
Glycodeoxycholate	Consumption (import)	Bifidobacterium longum (Bifidobacterium infantis, Bifidobacterium suis)	[29,257,330]
Glycodeoxycholate	Consumption (import)	Clostridium perfringens	[29,257]
Glycodeoxycholate	Consumption (import)	Lactobacillus acidophilus	[16,330]
Glycodeoxycholate	Consumption (import)	Lactobacillus brevis	[330]
Glycodeoxycholate	Consumption (import)	Lactobacillus buchneri	[330]
Glycodeoxycholate	Consumption (import)	Lactobacillus gasseri	[16,330]
Glycodeoxycholate	Consumption (import)	Lactobacillus hilgardii	[330]
Glycodeoxycholate	Consumption (import)	Lactobacillus johnsonii	[16,29,257,330]
Glycodeoxycholate	Consumption (import)	Lactobacillus plantarum	[16,29,257,330]
Glycodeoxycholate	Consumption (import)	Listeria monocytogenes	[16,17,257]
Glycolate	Consumption (import)	Moorella thermoacetica	[275]
Glycolate	Consumption (import)	Syntrophobotulus glycolicus	[302]
Glycolithocholate	Consumption (import)	Bifidobacterium adolescentis	[29,330]
Glycolithocholate	Consumption (import)	Bifidobacterium animalis	[330]
Glycolithocholate	Consumption (import)	Bifidobacterium bifidum	[29,330]
Glycolithocholate	Consumption (import)	Bifidobacterium breve	[330]
Glycolithocholate	Consumption (import)	Bifidobacterium longum (Bifidobacterium infantis, Bifidobacterium suis)	[29,330]
Glycolithocholate	Consumption (import)	Clostridium perfringens	[29]
Glycolithocholate	Consumption (import)	Lactobacillus acidophilus	[16,330]
Glycolithocholate	Consumption (import)	Lactobacillus brevis	[330]
Glycolithocholate	Consumption (import)	Lactobacillus buchneri	[330]
Glycolithocholate	Consumption (import)	Lactobacillus gasseri	[16,330]
Glycolithocholate	Consumption (import)	Lactobacillus hilgardii	[330]
Glycolithocholate	Consumption (import)	Lactobacillus plantarum	[16,29,330]
Glycolithocholate	Consumption (import)	Listeria monocytogenes	[16,17]
Glyoxylate (Glyoxylic acid, Glyoxalate)	Consumption (import)	Moorella thermoacetica	[81,275]
Glyoxylate (Glyoxylic acid, Glyoxalate)	Consumption (import)	Syntrophobotulus glycolicus	[302]
Guanine	Consumption (import)	Colonocyte (host colon)	[336]
Guanosine	Consumption (import)	Colonocyte (host colon)	[336]
H2 (Hydrogen)	Production (export)	Acetivibrio cellulolyticus	[237]
H2 (Hydrogen)	Consumption (import)	Acetohalobium arabaticum	[233]
H2 (Hydrogen)	Production (export)	Acidaminococcus fermentans	[41,143]
H2 (Hydrogen)	Production (export)	Alistipes putredinis	[252]
H2 (Hydrogen)	Production (export)	Anaerostipes caccae	[85]
H2 (Hydrogen)	Production (export)	Bacillus amyloliquefaciens	[339]
H2 (Hydrogen)	Production (export)	Bacillus anthracis	[339]
H2 (Hydrogen)	Production (export)	Bacillus atrophaeus	[339]
H2 (Hydrogen)	Production (export)	Bacillus cellulosilyticus	[339]
H2 (Hydrogen)	Production (export)	Bacillus cereus	[339]
H2 (Hydrogen)	Production (export)	Bacillus clausii	[339]
H2 (Hydrogen)	Production (export)	Bacillus coagulans	[339]
H2 (Hydrogen)	Production (export)	Bacillus coahuilensis	[339]
H2 (Hydrogen)	Production (export)	Bacillus halodurans	[339]
H2 (Hydrogen)	Production (export)	Bacillus licheniformis	[339]
H2 (Hydrogen)	Production (export)	Bacillus megaterium	[339]
H2 (Hydrogen)	Production (export)	Bacillus mycoides	[339]
H2 (Hydrogen)	Production (export)	Bacillus pseudofirmus	[339]
H2 (Hydrogen)	Production (export)	Bacillus pseudomycoides	[339]
H2 (Hydrogen)	Production (export)	Bacillus pumilus	[339]
H2 (Hydrogen)	Production (export)	Bacillus selenitireducens	[339]
H2 (Hydrogen)	Production (export)	Bacillus subtilis	[339]
H2 (Hydrogen)	Production (export)	Bacillus thuringiensis	[339]
H2 (Hydrogen)	Production (export)	Bacillus weihenstephanensis	[339]
H2 (Hydrogen)	Production (export)	Bacteroides caccae	[149,172]
H2 (Hydrogen)	Production (export)	Bacteroides cellulosilyticus	[149,172]
H2 (Hydrogen)	Production (export)	Bacteroides coprocola	[149,172]
H2 (Hydrogen)	Production (export)	Bacteroides coprophilus	[149,172]
H2 (Hydrogen)	Production (export)	Bacteroides dorei	[149,172]
H2 (Hydrogen)	Production (export)	Bacteroides eggerthii	[149,172]
H2 (Hydrogen)	Production (export)	Bacteroides finegoldii (Alistipes finegoldii)	[149,172]
H2 (Hydrogen)	Production (export)	Bacteroides fragilis	[149,172]
H2 (Hydrogen)	Production (export)	Bacteroides helcogenes	[149,172]
H2 (Hydrogen)	Production (export)	Bacteroides intestinalis	[149,172]
H2 (Hydrogen)	Production (export)	Bacteroides ovatus	[149,172]
H2 (Hydrogen)	Production (export)	Bacteroides pectinophilus	[149,172]
H2 (Hydrogen)	Production (export)	Bacteroides plebeius	[149,172]
H2 (Hydrogen)	Production (export)	Bacteroides salanitronis	[149,172]
H2 (Hydrogen)	Production (export)	Bacteroides stercoris	[149,172]
H2 (Hydrogen)	Production (export)	Bacteroides thetaiotaomicron	[118,149,172]
H2 (Hydrogen)	Production (export)	Bacteroides uniformis	[149,172]
H2 (Hydrogen)	Production (export)	Bacteroides vulgatus	[149,172]
H2 (Hydrogen)	Production (export)	Bacteroides xylanisolvens	[149,172]
H2 (Hydrogen)	Production (export)	Bifidobacterium longum (Bifidobacterium infantis, Bifidobacterium suis)	[13]
H2 (Hydrogen)	Consumption (import)	Bilophila wadsworthia	[75,169,304]
H2 (Hydrogen)	Consumption (import)	Blautia hansenii	[223]
H2 (Hydrogen)	Consumption (import)	Blautia hydrogenotrophica (Ruminococcus hydrogenotrophicus)	[24,46,92,94,223,256]
H2 (Hydrogen)	Production (export)	Butyrivibrio crossotus	[366]
H2 (Hydrogen)	Production (export)	Butyrivibrio fibrisolvens	[366]
H2 (Hydrogen)	Production (export)	Butyrivibrio proteoclasticus	[152,366]
H2 (Hydrogen)	Consumption (import)	Caminibacter mediatlanticus	[349]
H2 (Hydrogen)	Consumption (import)	Campylobacter gracilis	[358]
H2 (Hydrogen)	Production (export)	Clostridium acetobutylicum	[278,188,339]
H2 (Hydrogen)	Production (export)	Clostridium asparagiforme	[188,339]
H2 (Hydrogen)	Production (export)	Clostridium bartlettii	[188,339]
H2 (Hydrogen)	Production (export)	Clostridium beijerinckii	[175,216,188,339]
H2 (Hydrogen)	Production (export)	Clostridium bolteae	[188,339]
H2 (Hydrogen)	Production (export)	Clostridium botulinum	[188,339]
H2 (Hydrogen)	Production (export)	Clostridium butyricum	[188,339]
H2 (Hydrogen)	Production (export)	Clostridium carboxidivorans	[188,339]
H2 (Hydrogen)	Production (export)	Clostridium cellulolyticum	[278,188,339]
H2 (Hydrogen)	Production (export)	Clostridium cellulovorans	[188,339]
H2 (Hydrogen)	Production (export)	Clostridium cf	[188,339]
H2 (Hydrogen)	Production (export)	Clostridium difficile	[188,339]
H2 (Hydrogen)	Production (export)	Clostridium hathewayi	[188,339]
H2 (Hydrogen)	Production (export)	Clostridium hiranonis	[188,339]
H2 (Hydrogen)	Production (export)	Clostridium hylemonae	[188,339]
H2 (Hydrogen)	Production (export)	Clostridium kluyveri	[294,188,339]
H2 (Hydrogen)	Production (export)	Clostridium leptum	[188,339]
H2 (Hydrogen)	Production (export)	Clostridium ljungdahlii	[188,339]
H2 (Hydrogen)	Production (export)	Clostridium methylpentosum	[188,339]
H2 (Hydrogen)	Production (export)	Clostridium nexile	[188,339]
H2 (Hydrogen)	Production (export)	Clostridium novyi	[188,339]
H2 (Hydrogen)	Production (export)	Clostridium papyrosolvens	[188,339]
H2 (Hydrogen)	Production (export)	Clostridium perfringens	[188,339]
H2 (Hydrogen)	Production (export)	Clostridium phytofermentans	[188,339]
H2 (Hydrogen)	Production (export)	Clostridium saccharolyticum	[188,339]
H2 (Hydrogen)	Production (export)	Clostridium scindens	[188,339]
H2 (Hydrogen)	Production (export)	Clostridium sporogenes	[188,339]
H2 (Hydrogen)	Production (export)	Clostridium sticklandii	[188,339]
H2 (Hydrogen)	Production (export)	Clostridium symbiosum	[188,339]
H2 (Hydrogen)	Production (export)	Clostridium tetani	[188,339]
H2 (Hydrogen)	Production (export)	Clostridium thermocellum	[315,188,339]
H2 (Hydrogen)	Production (export)	Collinsella aerofaciens (Eubacterium aerofaciens)	[255,145]
H2 (Hydrogen)	Production (export)	Collinsella intestinalis	[145]
H2 (Hydrogen)	Production (export)	Collinsella stercoris	[145]
H2 (Hydrogen)	Production (export)	Coprococcus catus	[124]
H2 (Hydrogen)	Production (export)	Coprococcus eutactus	[82,124]
H2 (Hydrogen)	Consumption (import)	Desulfobulbus propionicus	[288,291,223,255]
H2 (Hydrogen)	Consumption (import)	Desulfovibrio aespoeensis	[106,223,255,324]
H2 (Hydrogen)	Consumption (import)	Desulfovibrio desulfuricans	[59,106,223,255,324]
H2 (Hydrogen)	Consumption (import)	Desulfovibrio fructosovorans	[106,223,255,324]
H2 (Hydrogen)	Consumption (import)	Desulfovibrio magneticus	[106,223,255,324]
H2 (Hydrogen)	Consumption (import)	Desulfovibrio piger	[255,106,223,255,324]
H2 (Hydrogen)	Consumption (import)	Desulfovibrio salexigens	[106,223,255,324]
H2 (Hydrogen)	Consumption (import) & production (export)	Desulfovibrio vulgaris	[157,322,106,223,255,324]
H2 (Hydrogen)	Production (export)	Dorea formicigenerans	[333]
H2 (Hydrogen)	Production (export)	Enterococcus casseliflavus	[45]
H2 (Hydrogen)	Production (export)	Enterococcus faecalis (Streptococcus faecalis)	[45]
H2 (Hydrogen)	Production (export)	Enterococcus faecium (Streptococcus faecium)	[45]
H2 (Hydrogen)	Production (export)	Enterococcus gallinarum	[355,45]
H2 (Hydrogen)	Production (export)	Enterococcus italicus	[45]
H2 (Hydrogen)	Production (export)	Escherichia coli	[166]
H2 (Hydrogen)	Production (export)	Ethanoligenens harbinense	[355]
H2 (Hydrogen)	Production (export)	Eubacterium cellulosolvens	[83,149]
H2 (Hydrogen)	Production (export)	Eubacterium eligens	[83,149]
H2 (Hydrogen)	Production (export)	Eubacterium hallii	[85,83,149]
H2 (Hydrogen)	Consumption (import) & production (export)	Eubacterium limosum	[85,319,83,149]
H2 (Hydrogen)	Production (export)	Eubacterium rectale	[13,301,83,149]
H2 (Hydrogen)	Production (export)	Eubacterium saburreum	[49,83,149]
H2 (Hydrogen)	Production (export)	Eubacterium saphenum	[83,149]
H2 (Hydrogen)	Production (export)	Eubacterium siraeum	[49,83,149]
H2 (Hydrogen)	Production (export)	Eubacterium ventriosum	[83,149]
H2 (Hydrogen)	Production (export)	Geobacter metallireducens	[327]
H2 (Hydrogen)	Consumption (import) & production (export)	Geobacter sulfurreducens	[59,222,302,327]
H2 (Hydrogen)	Consumption (import)	Ignicoccus hospitalis	[366]
H2 (Hydrogen)	Consumption (import)	Marvinbryantia formatexigens	[223]
H2 (Hydrogen)	Consumption (import)	Methanobrevibacter ruminantium	[168,172,327,366,180]
H2 (Hydrogen)	Consumption (import)	Methanobrevibacter smithii	[46,172,180,199,223,281,282,366,180]
H2 (Hydrogen)	Consumption (import)	Methanocaldococcus fervens	[180]
H2 (Hydrogen)	Consumption (import)	Methanocaldococcus infernus	[180]
H2 (Hydrogen)	Consumption (import)	Methanocaldococcus jannaschii	[65,180]
H2 (Hydrogen)	Consumption (import)	Methanocaldococcus vulcanius	[180]
H2 (Hydrogen)	Consumption (import)	Methanococcus aeolicus	[180]
H2 (Hydrogen)	Consumption (import)	Methanococcus maripaludis	[157,162,322,180]
H2 (Hydrogen)	Consumption (import)	Methanococcus vannielii	[28,180]
H2 (Hydrogen)	Consumption (import)	Methanococcus voltae	[28,180]
H2 (Hydrogen)	Consumption (import)	Methanocorpusculum labreanum	[180]
H2 (Hydrogen)	Consumption (import)	Methanoculleus marisnigri	[180]
H2 (Hydrogen)	Consumption (import)	Methanoplanus petrolearius	[180]
H2 (Hydrogen)	Consumption (import)	Methanopyrus kandleri	[28,65,180,366,180]
H2 (Hydrogen)	Consumption (import)	Methanosaeta thermophila	[28]
H2 (Hydrogen)	Consumption (import)	Methanosarcina acetivorans	[162,28,180,318,319]
H2 (Hydrogen)	Consumption (import)	Methanosarcina barkeri	[28,109,180,28,180,318,319]
H2 (Hydrogen)	Consumption (import)	Methanosarcina mazei	[28,180,318,319]
H2 (Hydrogen)	Consumption (import)	Methanosphaera stadtmanae	[180,223,28,180]
H2 (Hydrogen)	Consumption (import)	Methanosphaerula palustris	[426]
H2 (Hydrogen)	Consumption (import)	Methanospirillum hungatei	[162,318,321,324,180]
H2 (Hydrogen)	Consumption (import)	Methanothermobacter marburgensis	[180]
H2 (Hydrogen)	Consumption (import)	Methanothermobacter thermautotrophicus	[65,135,162,180]
H2 (Hydrogen)	Consumption (import)	Methanothermococcus okinawensis	[180]
H2 (Hydrogen)	Consumption (import)	Methanothermus fervidus	[28,180]
H2 (Hydrogen)	Production (export)	Odoribacter splanchnicus	[107]
H2 (Hydrogen)	Production (export)	Pelobacter carbinolicus	[5,222,289,327]
H2 (Hydrogen)	Production (export)	Pelotomaculum thermopropionicum	[135,162,219]
H2 (Hydrogen)	Production (export)	Porphyromonas asaccharolytica	[306]
H2 (Hydrogen)	Production (export)	Pyrococcus abyssi	[366]
H2 (Hydrogen)	Production (export)	Pyrococcus furiosus	[366]
H2 (Hydrogen)	Production (export)	Pyrococcus horikoshii	[366]
H2 (Hydrogen)	Production (export)	Roseburia intestinalis	[46,82,83,94]
H2 (Hydrogen)	Production (export)	Ruminococcus albus	[95,168,188,318,45]
H2 (Hydrogen)	Production (export)	Ruminococcus bromii	[350,45]
H2 (Hydrogen)	Production (export)	Ruminococcus flavefaciens	[95,168,45]
H2 (Hydrogen)	Production (export)	Ruminococcus gnavus	[45]
H2 (Hydrogen)	Production (export)	Ruminococcus lactaris	[45]
H2 (Hydrogen)	Production (export)	Ruminococcus obeum	[45]
H2 (Hydrogen)	Production (export)	Ruminococcus torques	[124,45]
H2 (Hydrogen)	Consumption (import)	Sphingobium japonicum	[59,186]
H2 (Hydrogen)	Production (export)	Syntrophobacter fumaroxidans	[135,162,219]
H2 (Hydrogen)	Production (export)	Syntrophomonas wolfei	[31,137,162,219,302,318,321,367]
H2 (Hydrogen)	Production (export)	Syntrophus aciditrophicus	[137,162]
H2 (Hydrogen)	Production (export)	Thermotoga maritima	[219,302]
H2 (Hydrogen)	Production (export)	Veillonella parvula	[229]
H2 (Hydrogen)	Consumption (import)	Wolinella succinogenes	[59,318]
H2O2	Consumption (import)	Colonocyte (host colon)	[262,336]
H2O2	Production (export)	Streptococcus agalactiae	[317]
H2O2	Production (export)	Streptococcus anginosus	[317]
H2O2	Production (export)	Streptococcus australis	[317]
H2O2	Production (export)	Streptococcus bovis (Streptococcus equinus)	[317]
H2O2	Production (export)	Streptococcus cristatus	[317]
H2O2	Production (export)	Streptococcus downei	[317]
H2O2	Production (export)	Streptococcus dysgalactiae	[317]
H2O2	Production (export)	Streptococcus equi	[317]
H2O2	Production (export)	Streptococcus gallolyticus	[317]
H2O2	Production (export)	Streptococcus gordonii	[317]
H2O2	Production (export)	Streptococcus infantarius	[317]
H2O2	Production (export)	Streptococcus infantis	[317]
H2O2	Production (export)	Streptococcus mitis	[317]
H2O2	Production (export)	Streptococcus mutans	[317]
H2O2	Production (export)	Streptococcus oralis	[317]
H2O2	Production (export)	Streptococcus parasanguinis	[317]
H2O2	Production (export)	Streptococcus peroris	[317]
H2O2	Production (export)	Streptococcus pneumoniae	[317]
H2O2	Production (export)	Streptococcus pseudoporcinus	[317]
H2O2	Production (export)	Streptococcus pyogenes	[317]
H2O2	Production (export)	Streptococcus salivarius	[317]
H2O2	Production (export)	Streptococcus sanguinis	[123,317]
H2O2	Production (export)	Streptococcus suis	[317]
H2O2	Production (export)	Streptococcus thermophilus	[317]
H2O2	Production (export)	Streptococcus uberis	[317]
H2O2	Production (export)	Streptococcus vestibularis	[317]
H2S (HS-)	Production (export)	Achromobacter piechaudii	[151]
H2S (HS-)	Production (export)	Acidaminococcus fermentans	[143]
H2S (HS-)	Production (export)	Anaerotruncus colihominis	[170]
H2S (HS-)	Production (export)	Archaeoglobus fulgidus	[Supplementary Data 2d]
H2S (HS-)	Production (export)	Archaeoglobus profundus	[Supplementary Data 2d]
H2S (HS-)	Production (export)	Bilophila wadsworthia	[67,75]
H2S (HS-)	Production (export)	Caldivirga maquilingensis	[Supplementary Data 2d]
H2S (HS-)	Production (export)	Caminibacter mediatlanticus	[349]
H2S (HS-)	Production (export)	Desulfarculus baarsii	[Supplementary Data 2d]
H2S (HS-)	Production (export)	Desulfatibacillum alkenivorans	[Supplementary Data 2d]
H2S (HS-)	Production (export)	Desulfobacterium autotrophicum	[Supplementary Data 2d]
H2S (HS-)	Production (export)	Desulfobulbus propionicus	[Supplementary Data 2d]
H2S (HS-)	Production (export)	Desulfococcus oleovorans	[Supplementary Data 2d]
H2S (HS-)	Production (export)	Desulfohalobium retbaense	[Supplementary Data 2d]
H2S (HS-)	Production (export)	Desulfomicrobium baculatum	[Supplementary Data 2d]
H2S (HS-)	Production (export)	Desulfonatronospira thiodismutans	[Supplementary Data 2d]
H2S (HS-)	Production (export)	Desulfotalea psychrophila	[Supplementary Data 2d]
H2S (HS-)	Production (export)	Desulfotomaculum acetoxidans	[Supplementary Data 2d]
H2S (HS-)	Production (export)	Desulfotomaculum nigrificans	[Supplementary Data 2d]
H2S (HS-)	Production (export)	Desulfotomaculum reducens	[Supplementary Data 2d]
H2S (HS-)	Production (export)	Desulfovibrio aespoeensis	[Supplementary Data 2d,255]
H2S (HS-)	Production (export)	Desulfovibrio desulfuricans	[Supplementary Data 2d,255]
H2S (HS-)	Production (export)	Desulfovibrio fructosovorans	[Supplementary Data 2d,255]
H2S (HS-)	Production (export)	Desulfovibrio magneticus	[Supplementary Data 2d,255]
H2S (HS-)	Production (export)	Desulfovibrio piger	[255,Supplementary Data 2d,255]
H2S (HS-)	Production (export)	Desulfovibrio salexigens	[Supplementary Data 2d,255]
H2S (HS-)	Production (export)	Desulfovibrio vulgaris	[157,Supplementary Data 2d,255]
H2S (HS-)	Consumption (import)	Methanosarcina barkeri	[109]
H2S (HS-)	Production (export)	Odoribacter splanchnicus	[107]
H2S (HS-)	Production (export)	Pyramidobacter piscolens	[79]
H2S (HS-)	Production (export)	Shewanella putrefaciens (Pseudomonas putrefaciens)	[274]
H2S (HS-)	Production (export)	Syntrophobacter fumaroxidans	[Supplementary Data 2d]
H2S (HS-)	Production (export)	Thermodesulfovibrio yellowstonii	[Supplementary Data 2d]
Hemicellulose	Macromolecule degradation	Actinomyces coleocanis	[34]
Hemicellulose	Macromolecule degradation	Actinomyces odontolyticus	[34]
Hemicellulose	Macromolecule degradation	Actinomyces oris	[34]
Hemicellulose	Macromolecule degradation	Actinomyces urogenitalis	[34]
Hemicellulose	Macromolecule degradation	Actinomyces viscosus	[34]
Hemicellulose	Macromolecule degradation	Actinosynnema mirum	[34]
Hemicellulose	Macromolecule degradation	Bacillus pumilus	[70]
Hemicellulose	Macromolecule degradation	Bacteroides cellulosilyticus	[95]
Hemicellulose	Macromolecule degradation	Bacteroides dorei	[95]
Hemicellulose	Macromolecule degradation	Bacteroides eggerthii	[76,279]
Hemicellulose	Macromolecule degradation	Bacteroides fragilis	[279]
Hemicellulose	Macromolecule degradation	Bacteroides intestinalis	[76,95]
Hemicellulose	Macromolecule degradation	Bacteroides ovatus	[161,161,161,95,161,167,204,64,204,44,76,95,96,161,279,161]
Hemicellulose	Macromolecule degradation	Bacteroides thetaiotaomicron	[118,161,312,64,118,161,204,256,311,92,301,312]
Hemicellulose	Macromolecule degradation	Bifidobacterium adolescentis	[280]
Hemicellulose	Macromolecule degradation	Bifidobacterium animalis	[62,210]
Hemicellulose	Macromolecule degradation	Bifidobacterium bifidum	[62]
Hemicellulose	Macromolecule degradation	Bifidobacterium catenulatum	[62]
Hemicellulose	Macromolecule degradation	Bifidobacterium dentium	[62]
Hemicellulose	Macromolecule degradation	Bifidobacterium longum (Bifidobacterium infantis, Bifidobacterium suis)	[92,280]
Hemicellulose	Macromolecule degradation	Bifidobacterium pseudocatenulatum	[62]
Hemicellulose	Macromolecule degradation	Butyrivibrio crossotus	[217]
Hemicellulose	Macromolecule degradation	Butyrivibrio fibrisolvens	[71,147,95,217]
Hemicellulose	Macromolecule degradation	Butyrivibrio proteoclasticus	[152,217]
Hemicellulose	Macromolecule degradation	Caldicellulosiruptor bescii (Anaerocellum thermophilum)	[35]
Hemicellulose	Macromolecule degradation	Clostridium cellulolyticum	[278]
Hemicellulose	Macromolecule degradation	Fibrobacter succinogenes (Bacteroides succinogenes)	[326,198,326,326,326]
Hemicellulose	Macromolecule degradation	Flavobacterium johnsoniae	[424]
Hemicellulose	Macromolecule degradation	Parabacteroides distasonis	[64]
Hemicellulose	Macromolecule degradation	Prevotella bryantii	[76,95,96]
Hemicellulose	Macromolecule degradation	Prevotella ruminicola (Bacteroides ruminicola)	[71,147,3,95,144]
Hemicellulose	Macromolecule degradation	Roseburia intestinalis	[46,83,84,94,95,96,184]
Hemicellulose	Macromolecule degradation	Ruminococcus albus	[71]
Hemicellulose	Macromolecule degradation	Ruminococcus flavefaciens	[71]
Hemicellulose	Macromolecule degradation	Streptomyces lividans	[231]
Hemicellulose	Macromolecule degradation	Thermobifida fusca	[1]
Histamine	Production (export)	Clostridium perfringens	[308]
Histamine	Consumption (import)	Colonocyte (host colon)	[336]
Hyaluronan (Hyaluronate, Hyaluronic acid)	Macromolecule degradation	Bacteroides ovatus	[204]
Hyaluronan (Hyaluronate, Hyaluronic acid)	Macromolecule degradation	Bacteroides thetaiotaomicron	[29,118,161,204,221]
Hyaluronan (Hyaluronate, Hyaluronic acid)	Macromolecule degradation	Clostridium perfringens	[320,374]
Hyaluronan (Hyaluronate, Hyaluronic acid)	Macromolecule degradation	Streptococcus pyogenes	[320]
I- (Iodide)	Consumption (import)	Colonocyte (host colon)	[336]
Indole	Production (export)	Alistipes putredinis	[252]
Indole	Production (export)	Alistipes shahii	[310]
Indole	Production (export)	Anaerococcus hydrogenalis	[90]
Indole	Production (export)	Anaerococcus vaginalis	[90]
Indole	Production (export)	Anaerotruncus colihominis	[170]
Indole	Production (export)	Clostridium sporogenes	[230]
Indole	Consumption (import)	Colonocyte (host colon)	[132]
Indole	Consumption (import)	Desulfovibrio aespoeensis	[106]
Indole	Consumption (import)	Desulfovibrio desulfuricans	[106]
Indole	Consumption (import)	Desulfovibrio fructosovorans	[106]
Indole	Consumption (import)	Desulfovibrio magneticus	[106]
Indole	Consumption (import)	Desulfovibrio piger	[106]
Indole	Consumption (import)	Desulfovibrio salexigens	[106]
Indole	Consumption (import)	Desulfovibrio vulgaris	[106]
Indole	Production (export)	Escherichia coli	[33,230,273]
Indole	Production (export)	Eubacterium saburreum	[49]
Indole	Production (export)	Odoribacter splanchnicus	[107]
Indole	Production (export)	Peptoniphilus harei	[90]
Indole	Production (export)	Peptoniphilus lacrimalis	[90]
Indole-3-acetate (Indoleacetate)	Production (export)	Clostridium botulinum	[86]
Indole-3-acetate (Indoleacetate)	Production (export)	Clostridium sporogenes	[230]
Indole-3-acetate (Indoleacetate)	Production (export)	Clostridium sticklandii	[86]
Indole-3-acetate (Indoleacetate)	Consumption (import)	Colonocyte (host colon)	[132]
Indole-3-acetate (Indoleacetate)	Consumption (import) & production (export)	Escherichia coli	[230,242]
Inosine	Consumption (import)	Anaerotruncus colihominis	[170]
Inosine	Consumption (import)	Colonocyte (host colon)	[336]
Inositol (myo-Inositol, Inositol 1-phosphate, Myo-inositol phosphate)	Consumption (import)	Colonocyte (host colon)	[336]
Inositol (myo-Inositol, Inositol 1-phosphate, Myo-inositol phosphate)	Consumption (import)	Dorea longicatena	[333]
Inositol (myo-Inositol, Inositol 1-phosphate, Myo-inositol phosphate)	Consumption (import)	Holdemania filiformis	[358]
Inositol (myo-Inositol, Inositol 1-phosphate, Myo-inositol phosphate)	Consumption (import)	Klebsiella pneumoniae	[178]
Inositol (myo-Inositol, Inositol 1-phosphate, Myo-inositol phosphate)	Consumption (import)	Paenibacillus larvae	[242]
Isethionate	Consumption (import)	Bilophila wadsworthia	[169]
Isobutyrate (2-Methylpropanoic acid)	Consumption (import)	Acidovorax avenae	[360]
Isobutyrate (2-Methylpropanoic acid)	Consumption (import)	Acidovorax delafieldii	[360]
Isobutyrate (2-Methylpropanoic acid)	Production (export)	Alistipes putredinis	[252]
Isobutyrate (2-Methylpropanoic acid)	Production (export)	Anaerostipes caccae	[285]
Isobutyrate (2-Methylpropanoic acid)	Production (export)	Bacteroides thetaiotaomicron	[118]
Isobutyrate (2-Methylpropanoic acid)	Production (export)	Blautia hydrogenotrophica (Ruminococcus hydrogenotrophicus)	[24]
Isobutyrate (2-Methylpropanoic acid)	Consumption (import)	Butyrivibrio crossotus	[217]
Isobutyrate (2-Methylpropanoic acid)	Consumption (import)	Butyrivibrio fibrisolvens	[217]
Isobutyrate (2-Methylpropanoic acid)	Consumption (import)	Butyrivibrio proteoclasticus	[217]
Isobutyrate (2-Methylpropanoic acid)	Production (export)	Catenibacterium mitsuokai	[146]
Isobutyrate (2-Methylpropanoic acid)	Production (export)	Clostridium sticklandii	[9]
Isobutyrate (2-Methylpropanoic acid)	Consumption (import)	Colonocyte (host colon)	[336]
Isobutyrate (2-Methylpropanoic acid)	Consumption (import)	Fibrobacter succinogenes (Bacteroides succinogenes)	[196,198]
Isobutyrate (2-Methylpropanoic acid)	Consumption (import)	Geobacter metallireducens	[186]
Isobutyrate (2-Methylpropanoic acid)	Production (export)	Odoribacter splanchnicus	[107]
Isobutyrate (2-Methylpropanoic acid)	Production (export)	Peptostreptococcus anaerobius	[307]
Isobutyrate (2-Methylpropanoic acid)	Consumption (import) & production (export)	Prevotella ruminicola (Bacteroides ruminicola)	[244,307,369]
Isobutyrate (2-Methylpropanoic acid)	Production (export)	Pyramidobacter piscolens	[79]
Isobutyrate (2-Methylpropanoic acid)	Consumption (import)	Ruminococcus albus	[121]
Isobutyrate (2-Methylpropanoic acid)	Consumption (import)	Ruminococcus bromii	[121]
Isobutyrate (2-Methylpropanoic acid)	Consumption (import)	Ruminococcus flavefaciens	[196]
Isomaltose	Consumption (import)	Bifidobacterium adolescentis	[104]
Isomaltose	Consumption (import)	Bifidobacterium breve	[104,247]
Isomaltose	Consumption (import)	Bifidobacterium longum (Bifidobacterium infantis, Bifidobacterium suis)	[104]
Isopropanol (2-Propanol)	Production (export)	Clostridium beijerinckii	[175]
Isovalerate (3-Methylbutanoic acid)	Consumption (import)	Achromobacter piechaudii	[156]
Isovalerate (3-Methylbutanoic acid)	Consumption (import)	Acidovorax avenae	[360]
Isovalerate (3-Methylbutanoic acid)	Consumption (import)	Acidovorax delafieldii	[360]
Isovalerate (3-Methylbutanoic acid)	Production (export)	Alistipes putredinis	[252]
Isovalerate (3-Methylbutanoic acid)	Production (export)	Anaerostipes caccae	[285]
Isovalerate (3-Methylbutanoic acid)	Production (export)	Bacteroides ovatus	[307]
Isovalerate (3-Methylbutanoic acid)	Production (export)	Bacteroides thetaiotaomicron	[118]
Isovalerate (3-Methylbutanoic acid)	Production (export)	Blautia hydrogenotrophica (Ruminococcus hydrogenotrophicus)	[24]
Isovalerate (3-Methylbutanoic acid)	Consumption (import)	Butyrivibrio crossotus	[217]
Isovalerate (3-Methylbutanoic acid)	Consumption (import)	Butyrivibrio fibrisolvens	[217]
Isovalerate (3-Methylbutanoic acid)	Consumption (import)	Butyrivibrio proteoclasticus	[217]
Isovalerate (3-Methylbutanoic acid)	Production (export)	Clostridium sticklandii	[9]
Isovalerate (3-Methylbutanoic acid)	Consumption (import)	Colonocyte (host colon)	[336]
Isovalerate (3-Methylbutanoic acid)	Consumption (import)	Desulfobacterium autotrophicum	[196]
Isovalerate (3-Methylbutanoic acid)	Consumption (import)	Geobacter metallireducens	[186]
Isovalerate (3-Methylbutanoic acid)	Production (export)	Odoribacter splanchnicus	[107]
Isovalerate (3-Methylbutanoic acid)	Production (export)	Peptostreptococcus anaerobius	[90,307]
Isovalerate (3-Methylbutanoic acid)	Consumption (import) & production (export)	Prevotella ruminicola (Bacteroides ruminicola)	[244,307,369]
Isovalerate (3-Methylbutanoic acid)	Production (export)	Pyramidobacter piscolens	[79]
Isovalerate (3-Methylbutanoic acid)	Consumption (import)	Ruminococcus bromii	[121]
Isovalerate (3-Methylbutanoic acid)	Consumption (import)	Ruminococcus flavefaciens	[196]
Isovalerate (3-Methylbutanoic acid)	Production (export)	Staphylococcus aureus	[33]
Itaconate	Consumption (import)	Achromobacter piechaudii	[156]
K+ (Potassium)	Production (export)	Colonocyte (host colon)	[340,370]
L-Alanine (D-Alanine, Alanine)	Consumption (import)	Aminobacterium colombiense	[302]
L-Alanine (D-Alanine, Alanine)	Consumption (import)	Baumannia cicadellinicola	[368]
L-Alanine (D-Alanine, Alanine)	Consumption (import)	Clostridium botulinum	[212]
L-Alanine (D-Alanine, Alanine)	Consumption (import)	Clostridium difficile	[212]
L-Alanine (D-Alanine, Alanine)	Consumption (import)	Clostridium sporogenes	[212]
L-Alanine (D-Alanine, Alanine)	Consumption (import)	Colonocyte (host colon)	[336]
L-Alanine (D-Alanine, Alanine)	Production (export)	Eubacterium rectale	[199]
L-Alanine (D-Alanine, Alanine)	Consumption (import)	Methylobacterium nodulans	[427]
L-Alanine (D-Alanine, Alanine)	Consumption (import)	Streptococcus bovis (Streptococcus equinus)	[205]
L-Arabitol (L-Arabinitol, D-Arabitol)	Consumption (import)	Acidovorax avenae	[360]
L-Arabitol (L-Arabinitol, D-Arabitol)	Consumption (import)	Acidovorax delafieldii	[360]
L-Arabitol (L-Arabinitol, D-Arabitol)	Consumption (import)	Actinobacillus succinogenes	[112]
L-Arabitol (L-Arabinitol, D-Arabitol)	Consumption (import)	Colonocyte (host colon)	[336]
L-Arabitol (L-Arabinitol, D-Arabitol)	Consumption (import)	Klebsiella pneumoniae	[178]
L-Arginine (Arginine)	Consumption (import)	Aeromicrobium marinum	[36]
L-Arginine (Arginine)	Consumption (import)	Anaerococcus lactolyticus	[90]
L-Arginine (Arginine)	Consumption (import)	Anaerococcus prevotii	[90]
L-Arginine (Arginine)	Consumption (import)	Anaerococcus tetradius	[90]
L-Arginine (Arginine)	Consumption (import)	Anaerococcus vaginalis	[90]
L-Arginine (Arginine)	Consumption (import)	Baumannia cicadellinicola	[207,368]
L-Arginine (Arginine)	Consumption (import)	Clostridium botulinum	[86,212]
L-Arginine (Arginine)	Consumption (import)	Clostridium difficile	[212]
L-Arginine (Arginine)	Consumption (import)	Clostridium perfringens	[306]
L-Arginine (Arginine)	Consumption (import)	Clostridium sporogenes	[212,307]
L-Arginine (Arginine)	Consumption (import)	Clostridium tetani	[212]
L-Arginine (Arginine)	Consumption (import)	Colonocyte (host colon)	[336]
L-Arginine (Arginine)	Production (export)	Corynebacterium glutamicum	[329]
L-Arginine (Arginine)	Consumption (import)	Enterococcus faecalis (Streptococcus faecalis)	[306]
L-Arginine (Arginine)	Consumption (import)	Finegoldia magna	[90]
L-Arginine (Arginine)	Consumption (import)	Peptoniphilus harei	[90]
L-Arginine (Arginine)	Consumption (import)	Peptoniphilus lacrimalis	[90]
L-Arginine (Arginine)	Consumption (import)	Streptococcus salivarius	[26]
L-Arginine (Arginine)	Consumption (import)	Sutterella wadsworthensis	[218]
L-Asparagine (Asparagine)	Consumption (import)	Acetohalobium arabaticum	[233]
L-Asparagine (Asparagine)	Consumption (import)	Colonocyte (host colon)	[336]
L-Asparagine (Asparagine)	Consumption (import)	Deinococcus radiodurans	[125]
L-Asparagine (Asparagine)	Consumption (import)	Fibrobacter succinogenes (Bacteroides succinogenes)	[37]
L-Asparagine (Asparagine)	Consumption (import)	Prevotella ruminicola (Bacteroides ruminicola)	[244]
L-Asparagine (Asparagine)	Consumption (import)	Ruminococcus albus	[37]
L-Asparagine (Asparagine)	Consumption (import)	Ruminococcus flavefaciens	[37]
L-Aspartate (Aspartate, D-Aspartate)	Consumption (import)	Acetohalobium arabaticum	[233]
L-Aspartate (Aspartate, D-Aspartate)	Consumption (import)	Aminobacterium colombiense	[302]
L-Aspartate (Aspartate, D-Aspartate)	Consumption (import)	Baumannia cicadellinicola	[368]
L-Aspartate (Aspartate, D-Aspartate)	Consumption (import)	Clostridium botulinum	[212]
L-Aspartate (Aspartate, D-Aspartate)	Consumption (import)	Clostridium difficile	[212]
L-Aspartate (Aspartate, D-Aspartate)	Consumption (import)	Clostridium perfringens	[306]
L-Aspartate (Aspartate, D-Aspartate)	Consumption (import)	Clostridium saccharolyticum	[306]
L-Aspartate (Aspartate, D-Aspartate)	Consumption (import)	Clostridium sporogenes	[212]
L-Aspartate (Aspartate, D-Aspartate)	Consumption (import)	Clostridium tetani	[212,306]
L-Aspartate (Aspartate, D-Aspartate)	Consumption (import)	Colonocyte (host colon)	[336]
L-Aspartate (Aspartate, D-Aspartate)	Production (export)	Corynebacterium glutamicum	[329]
L-Aspartate (Aspartate, D-Aspartate)	Consumption (import)	Eubacterium rectale	[301]
L-Aspartate (Aspartate, D-Aspartate)	Consumption (import)	Fusobacterium nucleatum	[182,307]
L-Aspartate (Aspartate, D-Aspartate)	Consumption (import)	Methylobacterium nodulans	[427]
L-Aspartate (Aspartate, D-Aspartate)	Consumption (import)	Streptococcus salivarius	[26]
L-Aspartate (Aspartate, D-Aspartate)	Consumption (import)	Sutterella wadsworthensis	[218]
L-Carnitine (D-Carnitine)	Consumption (import)	Colonocyte (host colon)	[336]
L-Cysteine (Cysteine, D-Cysteine)	Consumption (import)	Bacteroides fragilis	[198,343]
L-Cysteine (Cysteine, D-Cysteine)	Consumption (import)	Bacteroides thetaiotaomicron	[198]
L-Cysteine (Cysteine, D-Cysteine)	Consumption (import)	Bacteroides vulgatus	[198]
L-Cysteine (Cysteine, D-Cysteine)	Consumption (import)	Colonocyte (host colon)	[336]
L-Cysteine (Cysteine, D-Cysteine)	Consumption (import)	Fibrobacter succinogenes (Bacteroides succinogenes)	[198]
L-Cysteine (Cysteine, D-Cysteine)	Consumption (import)	Fusobacterium nucleatum	[182]
L-Cysteine (Cysteine, D-Cysteine)	Consumption (import)	Parabacteroides distasonis	[198]
L-Cysteine (Cysteine, D-Cysteine)	Consumption (import)	Prevotella ruminicola (Bacteroides ruminicola)	[244]
L-Cysteine (Cysteine, D-Cysteine)	Consumption (import)	Ruminococcus bromii	[121]
L-Fucose	Consumption (import)	Acidovorax avenae	[360]
L-Fucose	Consumption (import)	Acidovorax delafieldii	[360]
L-Fucose	Consumption (import)	Bacteroides fragilis	[279]
L-Fucose	Consumption (import)	Bacteroides ovatus	[204,279]
L-Fucose	Consumption (import)	Bacteroides thetaiotaomicron	[118,199,204,279,301]
L-Fucose	Consumption (import)	Bacteroides vulgatus	[279]
L-Fucose	Consumption (import)	Bifidobacterium breve	[62]
L-Fucose	Consumption (import)	Bifidobacterium longum (Bifidobacterium infantis, Bifidobacterium suis)	[62]
L-Fucose	Consumption (import)	Bifidobacterium pseudocatenulatum	[62]
L-Fucose	Consumption (import)	Eubacterium eligens	[280]
L-Fucose	Consumption (import)	Roseburia inulinivorans	[95,184,253,292]
L-Fucose	Consumption (import)	Ruminococcus gnavus	[95]
L-Fucose	Consumption (import)	Ruminococcus obeum	[95,253]
L-Fucose	Consumption (import)	Subdoligranulum variabile	[128]
L-Glutamate (L-Glutamic acid, Glutamate, D-Glutamate)	Consumption (import)	Acetohalobium arabaticum	[233]
L-Glutamate (L-Glutamic acid, Glutamate, D-Glutamate)	Consumption (import)	Acidaminococcus fermentans	[41,143,263]
L-Glutamate (L-Glutamic acid, Glutamate, D-Glutamate)	Consumption (import)	Aeromicrobium marinum	[36]
L-Glutamate (L-Glutamic acid, Glutamate, D-Glutamate)	Consumption (import)	Aminobacterium colombiense	[302]
L-Glutamate (L-Glutamic acid, Glutamate, D-Glutamate)	Consumption (import)	Baumannia cicadellinicola	[368]
L-Glutamate (L-Glutamic acid, Glutamate, D-Glutamate)	Consumption (import)	Colonocyte (host colon)	[336]
L-Glutamate (L-Glutamic acid, Glutamate, D-Glutamate)	Consumption (import)	Corynebacterium diphtheriae	[22]
L-Glutamate (L-Glutamic acid, Glutamate, D-Glutamate)	Production (export)	Corynebacterium glutamicum	[122]
L-Glutamate (L-Glutamic acid, Glutamate, D-Glutamate)	Consumption (import)	Deinococcus radiodurans	[125]
L-Glutamate (L-Glutamic acid, Glutamate, D-Glutamate)	Consumption (import)	Escherichia coli	[22]
L-Glutamate (L-Glutamic acid, Glutamate, D-Glutamate)	Production (export)	Eubacterium rectale	[199]
L-Glutamate (L-Glutamic acid, Glutamate, D-Glutamate)	Consumption (import)	Fusobacterium nucleatum	[182]
L-Glutamate (L-Glutamic acid, Glutamate, D-Glutamate)	Consumption (import)	Klebsiella pneumoniae	[178]
L-Glutamate (L-Glutamic acid, Glutamate, D-Glutamate)	Production (export)	Pelotomaculum thermopropionicum	[302]
L-Glutamate (L-Glutamic acid, Glutamate, D-Glutamate)	Consumption (import)	Streptococcus salivarius	[26]
L-Glutamine (D-Glutamine, Glutamine)	Consumption (import)	Baumannia cicadellinicola	[368]
L-Glutamine (D-Glutamine, Glutamine)	Consumption (import)	Clostridium botulinum	[212]
L-Glutamine (D-Glutamine, Glutamine)	Consumption (import)	Clostridium sporogenes	[212]
L-Glutamine (D-Glutamine, Glutamine)	Consumption (import)	Clostridium tetani	[212]
L-Glutamine (D-Glutamine, Glutamine)	Consumption (import)	Colonocyte (host colon)	[226,336]
L-Glutamine (D-Glutamine, Glutamine)	Consumption (import)	Deinococcus radiodurans	[125]
L-Glutamine (D-Glutamine, Glutamine)	Consumption (import)	Escherichia coli	[6]
L-Glutamine (D-Glutamine, Glutamine)	Consumption (import) & production (export)	Eubacterium rectale	[199,301]
L-Glutamine (D-Glutamine, Glutamine)	Consumption (import)	Fibrobacter succinogenes (Bacteroides succinogenes)	[37]
L-Glutamine (D-Glutamine, Glutamine)	Consumption (import)	Fusobacterium nucleatum	[182]
L-Glutamine (D-Glutamine, Glutamine)	Production (export)	Pelotomaculum thermopropionicum	[302]
L-Glutamine (D-Glutamine, Glutamine)	Consumption (import)	Prevotella ruminicola (Bacteroides ruminicola)	[244]
L-Glutamine (D-Glutamine, Glutamine)	Consumption (import)	Ruminococcus albus	[37]
L-Glutamine (D-Glutamine, Glutamine)	Consumption (import)	Streptococcus bovis (Streptococcus equinus)	[205]
L-Glycine (Glycine)	Consumption (import)	Clostridium botulinum	[86,212]
L-Glycine (Glycine)	Consumption (import)	Clostridium difficile	[212]
L-Glycine (Glycine)	Consumption (import)	Clostridium sporogenes	[212,307]
L-Glycine (Glycine)	Consumption (import)	Clostridium tetani	[212]
L-Glycine (Glycine)	Consumption (import)	Colonocyte (host colon)	[336]
L-Glycine (Glycine)	Consumption (import)	Eubacterium rectale	[301]
L-Glycine (Glycine)	Consumption (import)	Pyramidobacter piscolens	[79]
L-Glycine (Glycine)	Consumption (import)	Streptococcus salivarius	[26]
L-Histidine (Histidine)	Consumption (import)	Acetohalobium arabaticum	[233]
L-Histidine (Histidine)	Consumption (import)	Acidovorax avenae	[360]
L-Histidine (Histidine)	Consumption (import)	Acidovorax delafieldii	[360]
L-Histidine (Histidine)	Consumption (import)	Anaerococcus prevotii	[90]
L-Histidine (Histidine)	Consumption (import)	Anaerococcus vaginalis	[90]
L-Histidine (Histidine)	Production (export)	Baumannia cicadellinicola	[207,368]
L-Histidine (Histidine)	Consumption (import)	Clostridium botulinum	[212]
L-Histidine (Histidine)	Consumption (import)	Clostridium difficile	[212]
L-Histidine (Histidine)	Consumption (import)	Clostridium tetani	[212]
L-Histidine (Histidine)	Consumption (import)	Colonocyte (host colon)	[336]
L-Histidine (Histidine)	Consumption (import)	Escherichia coli	[6]
L-Histidine (Histidine)	Consumption (import)	Finegoldia magna	[90]
L-Histidine (Histidine)	Consumption (import)	Fusobacterium nucleatum	[182]
L-Histidine (Histidine)	Consumption (import)	Peptoniphilus harei	[90]
L-Histidine (Histidine)	Consumption (import)	Peptoniphilus lacrimalis	[90]
L-Histidine (Histidine)	Consumption (import)	Streptococcus salivarius	[26]
L-Homoserine	Consumption (import)	Baumannia cicadellinicola	[207,368]
L-Idonate	Consumption (import)	Escherichia coli	[240]
L-iduronate	Consumption (import)	Colonocyte (host colon)	[336]
L-Isoleucine (Isoleucine)	Consumption (import)	Aminobacterium colombiense	[302]
L-Isoleucine (Isoleucine)	Consumption (import)	Baumannia cicadellinicola	[207]
L-Isoleucine (Isoleucine)	Consumption (import)	Clostridium botulinum	[212]
L-Isoleucine (Isoleucine)	Consumption (import)	Clostridium difficile	[212]
L-Isoleucine (Isoleucine)	Consumption (import)	Clostridium sporogenes	[212]
L-Isoleucine (Isoleucine)	Consumption (import)	Colonocyte (host colon)	[336]
L-Isoleucine (Isoleucine)	Consumption (import)	Escherichia coli	[6]
L-Isoleucine (Isoleucine)	Consumption (import)	Streptococcus salivarius	[26]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Consumption (import)	Acetobacter pasteurianus	[134]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Consumption (import)	Acetohalobium arabaticum	[233]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Actinomyces coleocanis	[Supplementary Data 2d,145]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Actinomyces odontolyticus	[Supplementary Data 2d,145]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Actinomyces oris	[Supplementary Data 2d,145]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Actinomyces urogenitalis	[Supplementary Data 2d,145]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Actinomyces viscosus	[Supplementary Data 2d,145]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Consumption (import)	Aeromonas hydrophila	[2]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Consumption (import)	Aggregatibacter actinomycetemcomitans	[317]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Consumption (import)	Anaerostipes caccae	[18,19,85,91,94,184,189,285]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Atopobium parvulum	[185]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Atopobium rimae	[185]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Atopobium vaginae	[185]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Consumption (import) & production (export)	Bacteroides fragilis	[198,288]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Bacteroides ovatus	[190]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Bacteroides thetaiotaomicron	[118,281]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Bifidobacterium adolescentis	[18,85,94,189,Supplementary Data 2d,18,85,91,145,185,238,285,350]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Bifidobacterium angulatum	[Supplementary Data 2d,18,85,91,145,185,238,285,350]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Bifidobacterium animalis	[Supplementary Data 2d,18,85,91,145,185,238,285,350]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Bifidobacterium bifidum	[155,Supplementary Data 2d,18,85,91,145,185,238,285,350]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Bifidobacterium breve	[190,213,Supplementary Data 2d,18,85,91,145,185,238,285,350]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Bifidobacterium catenulatum	[Supplementary Data 2d,18,85,91,145,185,238,285,350]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Bifidobacterium dentium	[Supplementary Data 2d,18,85,91,145,185,238,285,350]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Bifidobacterium gallicum	[Supplementary Data 2d,18,85,91,145,185,238,285,350]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Bifidobacterium longum (Bifidobacterium infantis, Bifidobacterium suis)	[13,68,91,295,18,85,91,145,185,238,285,350,18,85,91,145,185,238,285,350]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Bifidobacterium pseudocatenulatum	[18,Supplementary Data 2d,18,85,91,145,185,238,285,350]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Consumption (import)	Bilophila wadsworthia	[169,304]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Blautia hansenii	[181]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Blautia hydrogenotrophica (Ruminococcus hydrogenotrophicus)	[24,24]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Butyrivibrio crossotus	[197,366]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Butyrivibrio fibrisolvens	[82,249,197,366]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Butyrivibrio proteoclasticus	[197,366]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Catenibacterium mitsuokai	[146]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Clostridium cellulolyticum	[239,278]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Consumption (import)	Clostridium kluyveri	[319]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Clostridium perfringens	[190]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Collinsella aerofaciens (Eubacterium aerofaciens)	[255,145]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Collinsella intestinalis	[145]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Collinsella stercoris	[145]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Consumption (import)	Colonocyte (host colon)	[336]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Consumption (import)	Comamonas testosteroni	[101]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Consumption (import) & production (export)	Coprococcus catus	[184,253,326]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Coprococcus comes	[124]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Coprococcus eutactus	[82,124]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Consumption (import)	Desulfobulbus propionicus	[288,318]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Consumption (import)	Desulfotomaculum nigrificans	[135]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Consumption (import)	Desulfovibrio aespoeensis	[106,223,255,302,318,319,321]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Consumption (import)	Desulfovibrio desulfuricans	[106,223,255,302,318,319,321]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Consumption (import)	Desulfovibrio fructosovorans	[106,223,255,302,318,319,321]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Consumption (import)	Desulfovibrio magneticus	[106,223,255,302,318,319,321]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Consumption (import) & production (export)	Desulfovibrio piger	[88,255,106,223,255,302,318,319,321]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Consumption (import)	Desulfovibrio salexigens	[106,223,255,302,318,319,321]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Consumption (import)	Desulfovibrio vulgaris	[157,302,322,106,223,255,302,318,319,321]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Dorea formicigenerans	[333]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Enterococcus casseliflavus	[Supplementary Data 2d,85,185,316]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Enterococcus faecalis (Streptococcus faecalis)	[85,185,316]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Enterococcus faecium (Streptococcus faecium)	[85,185,316]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Enterococcus gallinarum	[Supplementary Data 2d,85,185,316]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Enterococcus italicus	[Supplementary Data 2d,85,185,316]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Escherichia albertii	[316]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Escherichia coli	[122,342,316]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Escherichia fergusonii	[316]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Eubacterium cellulosolvens	[83,85,185,197]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Eubacterium eligens	[83,85,185,197]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Consumption (import) & production (export)	Eubacterium hallii	[18,19,85,94,184,189,285,83,85,185,197]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Consumption (import) & production (export)	Eubacterium limosum	[85,285,319,83,85,185,197]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Eubacterium rectale	[13,83,83,85,185,197]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Eubacterium saburreum	[83,85,185,197]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Eubacterium saphenum	[83,85,185,197]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Eubacterium siraeum	[128,83,85,185,197]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Eubacterium ventriosum	[83,85,185,197]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Faecalibacterium prausnitzii	[13,82,128,185,249]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Fibrobacter succinogenes (Bacteroides succinogenes)	[198]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Fusobacterium nucleatum	[47]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Consumption (import)	Haemophilus influenzae	[126]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Consumption (import)	Haemophilus parainfluenzae	[126]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Holdemania filiformis	[358,359]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Lactobacillus acidophilus	[Supplementary Data 2d,85,185,197,316,339]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Lactobacillus amylolyticus	[Supplementary Data 2d,85,185,197,316,339]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Lactobacillus amylovorus	[Supplementary Data 2d,85,185,197,316,339]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Lactobacillus antri	[Supplementary Data 2d,85,185,197,316,339]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Consumption (import) & production (export)	Lactobacillus brevis	[234,Supplementary Data 2d,85,185,197,316,339]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Consumption (import) & production (export)	Lactobacillus buchneri	[234,Supplementary Data 2d,85,185,197,316,339]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Lactobacillus casei	[Supplementary Data 2d,85,185,197,316,339]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Lactobacillus coleohominis	[Supplementary Data 2d,85,185,197,316,339]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Lactobacillus crispatus	[Supplementary Data 2d,85,185,197,316,339]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Lactobacillus delbrueckii	[245,Supplementary Data 2d,85,185,197,316,339]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Lactobacillus fermentum	[Supplementary Data 2d,85,185,197,316,339]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Lactobacillus gasseri	[Supplementary Data 2d,85,185,197,316,339]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Lactobacillus helveticus	[245,Supplementary Data 2d,85,185,197,316,339]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Lactobacillus hilgardii	[Supplementary Data 2d,85,185,197,316,339]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Lactobacillus iners	[Supplementary Data 2d,85,185,197,316,339]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Lactobacillus jensenii	[Supplementary Data 2d,85,185,197,316,339]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Lactobacillus johnsonii	[Supplementary Data 2d,85,185,197,316,339]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Lactobacillus oris	[Supplementary Data 2d,85,185,197,316,339]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Lactobacillus paracasei	[Supplementary Data 2d,85,185,197,316,339]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Consumption (import) & production (export)	Lactobacillus plantarum	[234,Supplementary Data 2d,85,185,197,316,339]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Lactobacillus reuteri	[Supplementary Data 2d,85,185,197,316,339]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Lactobacillus rhamnosus	[Supplementary Data 2d,85,185,197,316,339]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Lactobacillus ruminis	[Supplementary Data 2d,85,185,197,316,339]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Lactobacillus sakei	[Supplementary Data 2d,85,185,197,316,339]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Lactobacillus salivarius	[Supplementary Data 2d,85,185,197,316,339]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Lactobacillus ultunensis	[Supplementary Data 2d,85,185,197,316,339]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Lactobacillus vaginalis	[Supplementary Data 2d,85,185,197,316,339]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Lactococcus lactis	[67,Supplementary Data 2d,339]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Leptotrichia buccalis	[338,198]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Leptotrichia goodfellowii	[198]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Leptotrichia hofstadii	[198]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Leuconostoc citreum	[Supplementary Data 2d,316]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Leuconostoc gasicomitatum	[Supplementary Data 2d,316]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Leuconostoc kimchii	[Supplementary Data 2d,316]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Leuconostoc mesenteroides	[339,Supplementary Data 2d,316]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Marvinbryantia formatexigens	[256,364,364]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Megamonas hypermegale	[277]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Consumption (import)	Megasphaera micronuciformis	[85,197]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Consumption (import)	Methylobacterium nodulans	[427]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Consumption (import)	Moorella thermoacetica	[81]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Oenococcus oeni	[Supplementary Data 2d]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Pediococcus acidilactici	[67,Supplementary Data 2d]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Pediococcus pentosaceus	[Supplementary Data 2d]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Consumption (import)	Pelobacter propionicus	[288,289,318]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Consumption (import)	Pelotomaculum thermopropionicum	[135,162,302]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Consumption (import)	Propionibacterium acnes	[197,319]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Consumption (import)	Propionibacterium freudenreichii (Propionibacterium shermanii)	[197,319]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Consumption (import)	Pseudomonas aeruginosa	[344]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Consumption (import) & production (export)	Roseburia intestinalis	[82,83,91,185]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Roseburia inulinivorans	[185]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Ruminococcus bromii	[185]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Ruminococcus flavefaciens	[185]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Ruminococcus obeum	[326]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Ruminococcus torques	[124,326]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Consumption (import)	Selenomonas artemidis	[85,197]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Consumption (import)	Selenomonas flueggei	[85,197]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Consumption (import)	Selenomonas noxia	[85,197]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Consumption (import)	Selenomonas sputigena	[85,197]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Consumption (import)	Shewanella putrefaciens (Pseudomonas putrefaciens)	[186]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Staphylococcus aureus	[339]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Staphylococcus capitis	[339]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Staphylococcus carnosus	[339]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Staphylococcus epidermidis	[339]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Staphylococcus haemolyticus	[339]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Staphylococcus hominis	[339]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Staphylococcus lugdunensis	[339]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Staphylococcus pseudintermedius	[339]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Staphylococcus saprophyticus	[339]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Staphylococcus warneri	[339]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Streptococcus agalactiae	[Supplementary Data 2d,85,197,198,316,317,339]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Streptococcus anginosus	[Supplementary Data 2d,85,197,198,316,317,339]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Streptococcus australis	[Supplementary Data 2d,85,197,198,316,317,339]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Streptococcus bovis (Streptococcus equinus)	[205,270,85,197,198,316,317,339]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Streptococcus cristatus	[Supplementary Data 2d,85,197,198,316,317,339]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Streptococcus downei	[Supplementary Data 2d,85,197,198,316,317,339]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Streptococcus dysgalactiae	[Supplementary Data 2d,85,197,198,316,317,339]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Streptococcus equi	[205,270,Supplementary Data 2d,85,197,198,316,317,339]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Streptococcus gallolyticus	[Supplementary Data 2d,85,197,198,316,317,339]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Streptococcus gordonii	[141,Supplementary Data 2d,85,197,198,316,317,339]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Streptococcus infantarius	[Supplementary Data 2d,85,197,198,316,317,339]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Streptococcus infantis	[Supplementary Data 2d,85,197,198,316,317,339]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Streptococcus mitis	[Supplementary Data 2d,85,197,198,316,317,339]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Streptococcus mutans	[187,338,Supplementary Data 2d,85,197,198,316,317,339]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Streptococcus oralis	[Supplementary Data 2d,85,197,198,316,317,339]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Streptococcus parasanguinis	[Supplementary Data 2d,85,197,198,316,317,339]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Streptococcus peroris	[Supplementary Data 2d,85,197,198,316,317,339]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Streptococcus pneumoniae	[Supplementary Data 2d,85,197,198,316,317,339]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Streptococcus pseudoporcinus	[Supplementary Data 2d,85,197,198,316,317,339]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Streptococcus pyogenes	[Supplementary Data 2d,85,197,198,316,317,339]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Streptococcus salivarius	[Supplementary Data 2d,85,197,198,316,317,339]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Streptococcus sanguinis	[Supplementary Data 2d,85,197,198,316,317,339]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Streptococcus suis	[Supplementary Data 2d,85,197,198,316,317,339]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Streptococcus thermophilus	[67,213,245,Supplementary Data 2d,85,197,198,316,317,339]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Streptococcus uberis	[Supplementary Data 2d,85,197,198,316,317,339]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Streptococcus vestibularis	[Supplementary Data 2d,85,197,198,316,317,339]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Subdoligranulum variabile	[128]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Consumption (import)	Syntrophobacter fumaroxidans	[162]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Consumption (import)	Syntrophomonas wolfei	[162]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Consumption (import)	Syntrophus aciditrophicus	[162]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Consumption (import)	Veillonella atypica	[141,19,85,197,229]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Consumption (import)	Veillonella dispar	[19,85,197,229]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Consumption (import)	Veillonella parvula	[187,229,253,19,85,197,229]
L-Lactate ([S]-Lactate, Lactate, D-Lactate, [R]-Lactate)	Production (export)	Weissella paramesenteroides	[Supplementary Data 2d]
L-Leucine (Leucine)	Consumption (import)	Aminobacterium colombiense	[302]
L-Leucine (Leucine)	Consumption (import)	Anaerococcus tetradius	[90]
L-Leucine (Leucine)	Consumption (import)	Anaerococcus vaginalis	[90]
L-Leucine (Leucine)	Consumption (import)	Bacteroides thetaiotaomicron	[118]
L-Leucine (Leucine)	Consumption (import)	Baumannia cicadellinicola	[207]
L-Leucine (Leucine)	Production (export)	Buchnera aphidicola	[78]
L-Leucine (Leucine)	Consumption (import)	Clostridium botulinum	[212]
L-Leucine (Leucine)	Consumption (import)	Clostridium difficile	[212]
L-Leucine (Leucine)	Consumption (import)	Clostridium sporogenes	[212]
L-Leucine (Leucine)	Consumption (import)	Clostridium tetani	[212]
L-Leucine (Leucine)	Consumption (import)	Colonocyte (host colon)	[336]
L-Leucine (Leucine)	Consumption (import)	Escherichia coli	[6]
L-Leucine (Leucine)	Consumption (import)	Finegoldia magna	[90]
L-Leucine (Leucine)	Consumption (import)	Peptoniphilus lacrimalis	[90]
L-Leucine (Leucine)	Consumption (import)	Prevotella ruminicola (Bacteroides ruminicola)	[121]
L-Leucine (Leucine)	Consumption (import)	Streptococcus salivarius	[26]
L-Lysine (Lysine, D-Lysine)	Consumption (import)	Baumannia cicadellinicola	[207,368]
L-Lysine (Lysine, D-Lysine)	Consumption (import)	Clostridium botulinum	[86,212]
L-Lysine (Lysine, D-Lysine)	Consumption (import)	Clostridium tetani	[212]
L-Lysine (Lysine, D-Lysine)	Consumption (import)	Colonocyte (host colon)	[336]
L-Lysine (Lysine, D-Lysine)	Production (export)	Corynebacterium glutamicum	[122]
L-Lysine (Lysine, D-Lysine)	Consumption (import)	Fusobacterium nucleatum	[182,306]
L-Lysine (Lysine, D-Lysine)	Consumption (import)	Odoribacter splanchnicus	[107]
L-Lysine (Lysine, D-Lysine)	Consumption (import)	Streptococcus salivarius	[26]
L-Malate ([S]-Malate, L-Malic acid, Malate, D-Malate, [R]-Malate)	Consumption (import)	Anaerotruncus colihominis	[170]
L-Malate ([S]-Malate, L-Malic acid, Malate, D-Malate, [R]-Malate)	Consumption (import)	Bacillus subtilis	[118]
L-Malate ([S]-Malate, L-Malic acid, Malate, D-Malate, [R]-Malate)	Consumption (import)	Bilophila wadsworthia	[169]
L-Malate ([S]-Malate, L-Malic acid, Malate, D-Malate, [R]-Malate)	Production (export)	Clostridium tetani	[306]
L-Malate ([S]-Malate, L-Malic acid, Malate, D-Malate, [R]-Malate)	Consumption (import)	Colonocyte (host colon)	[336]
L-Malate ([S]-Malate, L-Malic acid, Malate, D-Malate, [R]-Malate)	Consumption (import)	Corynebacterium glutamicum	[118]
L-Malate ([S]-Malate, L-Malic acid, Malate, D-Malate, [R]-Malate)	Consumption (import)	Desulfovibrio vulgaris	[157]
L-Malate ([S]-Malate, L-Malic acid, Malate, D-Malate, [R]-Malate)	Consumption (import)	Ensifer meliloti (Sinorhizobium meliloti)	[118,331]
L-Malate ([S]-Malate, L-Malic acid, Malate, D-Malate, [R]-Malate)	Consumption (import)	Escherichia coli	[118,331]
L-Malate ([S]-Malate, L-Malic acid, Malate, D-Malate, [R]-Malate)	Consumption (import)	Klebsiella pneumoniae	[178]
L-Malate ([S]-Malate, L-Malic acid, Malate, D-Malate, [R]-Malate)	Consumption (import)	Methylobacterium nodulans	[427]
L-Malate ([S]-Malate, L-Malic acid, Malate, D-Malate, [R]-Malate)	Production (export)	Pelotomaculum thermopropionicum	[135]
L-Malate ([S]-Malate, L-Malic acid, Malate, D-Malate, [R]-Malate)	Consumption (import)	Pseudomonas aeruginosa	[118,341]
L-Malate ([S]-Malate, L-Malic acid, Malate, D-Malate, [R]-Malate)	Consumption (import)	Rhizobium leguminosarum	[118]
L-Malate ([S]-Malate, L-Malic acid, Malate, D-Malate, [R]-Malate)	Consumption (import)	Rhodobacter capsulatus	[118]
L-Malate ([S]-Malate, L-Malic acid, Malate, D-Malate, [R]-Malate)	Consumption (import)	Rhodopseudomonas palustris	[331]
L-Malate ([S]-Malate, L-Malic acid, Malate, D-Malate, [R]-Malate)	Consumption (import)	Syntrophobacter fumaroxidans	[302]
L-Malate ([S]-Malate, L-Malic acid, Malate, D-Malate, [R]-Malate)	Consumption (import)	Veillonella parvula	[229]
L-Malate ([S]-Malate, L-Malic acid, Malate, D-Malate, [R]-Malate)	Consumption (import)	Xanthomonas campestris	[331]
L-Methionine (D-Methionine)	Consumption (import)	Acholeplasma laidlawii	[171]
L-Methionine (D-Methionine)	Consumption (import)	Aminobacterium colombiense	[302]
L-Methionine (D-Methionine)	Consumption (import)	Bacteroides fragilis	[198,343]
L-Methionine (D-Methionine)	Consumption (import)	Bacteroides thetaiotaomicron	[198]
L-Methionine (D-Methionine)	Consumption (import)	Bacteroides vulgatus	[198]
L-Methionine (D-Methionine)	Production (export)	Baumannia cicadellinicola	[207]
L-Methionine (D-Methionine)	Production (export)	Buchnera aphidicola	[78]
L-Methionine (D-Methionine)	Consumption (import)	Clostridium botulinum	[212]
L-Methionine (D-Methionine)	Consumption (import)	Clostridium difficile	[212]
L-Methionine (D-Methionine)	Consumption (import)	Clostridium sporogenes	[212]
L-Methionine (D-Methionine)	Consumption (import)	Clostridium tetani	[212]
L-Methionine (D-Methionine)	Consumption (import)	Colonocyte (host colon)	[336]
L-Methionine (D-Methionine)	Consumption (import)	Deinococcus radiodurans	[125]
L-Methionine (D-Methionine)	Consumption (import)	Fusobacterium nucleatum	[182]
L-Methionine (D-Methionine)	Consumption (import)	Parabacteroides distasonis	[198]
L-Methionine (D-Methionine)	Consumption (import)	Prevotella ruminicola (Bacteroides ruminicola)	[244]
L-Methionine (D-Methionine)	Consumption (import)	Streptococcus salivarius	[26]
L-Ornithine (Ornithine)	Production (export)	Clostridium perfringens	[306]
L-Ornithine (Ornithine)	Consumption (import)	Colonocyte (host colon)	[336]
L-Ornithine (Ornithine)	Production (export)	Enterococcus faecalis (Streptococcus faecalis)	[306]
L-Ornithine (Ornithine)	Consumption (import)	Eubacterium rectale	[301]
L-Phenylalanine (Phenylalanine, D-Phenylalanine)	Consumption (import)	Bacteroides thetaiotaomicron	[307]
L-Phenylalanine (Phenylalanine, D-Phenylalanine)	Consumption (import)	Baumannia cicadellinicola	[207]
L-Phenylalanine (Phenylalanine, D-Phenylalanine)	Consumption (import)	Clostridium botulinum	[86,212]
L-Phenylalanine (Phenylalanine, D-Phenylalanine)	Consumption (import)	Clostridium difficile	[212]
L-Phenylalanine (Phenylalanine, D-Phenylalanine)	Consumption (import)	Clostridium sporogenes	[212,307]
L-Phenylalanine (Phenylalanine, D-Phenylalanine)	Consumption (import)	Clostridium sticklandii	[86]
L-Phenylalanine (Phenylalanine, D-Phenylalanine)	Consumption (import)	Clostridium tetani	[212]
L-Phenylalanine (Phenylalanine, D-Phenylalanine)	Consumption (import)	Colonocyte (host colon)	[336]
L-Phenylalanine (Phenylalanine, D-Phenylalanine)	Consumption (import)	Peptoniphilus lacrimalis	[90]
L-Phenylalanine (Phenylalanine, D-Phenylalanine)	Consumption (import)	Streptococcus salivarius	[26]
L-Proline (Proline, D-Proline)	Consumption (import)	Clostridium botulinum	[86,212]
L-Proline (Proline, D-Proline)	Consumption (import)	Clostridium difficile	[212]
L-Proline (Proline, D-Proline)	Consumption (import)	Clostridium sporogenes	[86,212,307]
L-Proline (Proline, D-Proline)	Consumption (import)	Clostridium sticklandii	[86]
L-Proline (Proline, D-Proline)	Consumption (import)	Colonocyte (host colon)	[336]
L-Proline (Proline, D-Proline)	Consumption (import)	Methylobacterium nodulans	[427]
L-Proline (Proline, D-Proline)	Consumption (import)	Peptostreptococcus anaerobius	[90]
L-Rhamnose (Rhamnose, D-Rhamnose)	Consumption (import)	Aeromonas hydrophila	[2]
L-Rhamnose (Rhamnose, D-Rhamnose)	Consumption (import)	Bacteroides ovatus	[204]
L-Rhamnose (Rhamnose, D-Rhamnose)	Consumption (import)	Bacteroides thetaiotaomicron	[118,204]
L-Rhamnose (Rhamnose, D-Rhamnose)	Consumption (import)	Bacteroides xylanisolvens	[44]
L-Rhamnose (Rhamnose, D-Rhamnose)	Consumption (import)	Butyrivibrio fibrisolvens	[217]
L-Rhamnose (Rhamnose, D-Rhamnose)	Consumption (import)	Butyrivibrio proteoclasticus	[152,217]
L-Rhamnose (Rhamnose, D-Rhamnose)	Consumption (import)	Collinsella aerofaciens (Eubacterium aerofaciens)	[145]
L-Rhamnose (Rhamnose, D-Rhamnose)	Consumption (import)	Holdemania filiformis	[358]
L-Rhamnose (Rhamnose, D-Rhamnose)	Consumption (import)	Parabacteroides distasonis	[276]
L-Rhamnose (Rhamnose, D-Rhamnose)	Consumption (import)	Prevotella copri	[116]
L-Rhamnose (Rhamnose, D-Rhamnose)	Consumption (import)	Ruminococcus obeum	[253]
L-Rhamnose (Rhamnose, D-Rhamnose)	Consumption (import)	Subdoligranulum variabile	[128]
L-Selenocysteine	Consumption (import)	Colonocyte (host colon)	[336]
L-Serine (Serine, D-Serine)	Consumption (import)	Anaerotruncus colihominis	[170]
L-Serine (Serine, D-Serine)	Consumption (import)	Clostridium botulinum	[86,212]
L-Serine (Serine, D-Serine)	Consumption (import)	Clostridium difficile	[212]
L-Serine (Serine, D-Serine)	Consumption (import)	Clostridium leptum	[307]
L-Serine (Serine, D-Serine)	Consumption (import)	Clostridium sporogenes	[212]
L-Serine (Serine, D-Serine)	Consumption (import)	Clostridium tetani	[212]
L-Serine (Serine, D-Serine)	Consumption (import)	Colonocyte (host colon)	[336]
L-Serine (Serine, D-Serine)	Consumption (import)	Deinococcus radiodurans	[125]
L-Serine (Serine, D-Serine)	Consumption (import)	Fusobacterium nucleatum	[182]
L-Serine (Serine, D-Serine)	Consumption (import)	Methylobacterium nodulans	[427]
L-Serine (Serine, D-Serine)	Consumption (import)	Propionibacterium acnes	[307]
L-Serine (Serine, D-Serine)	Consumption (import)	Streptococcus bovis (Streptococcus equinus)	[205]
L-Sorbose (Sorbose)	Consumption (import)	Klebsiella pneumoniae	[178]
L-Threonine (Threonine)	Consumption (import)	Acidovorax avenae	[360]
L-Threonine (Threonine)	Consumption (import)	Acidovorax delafieldii	[360]
L-Threonine (Threonine)	Consumption (import)	Baumannia cicadellinicola	[207]
L-Threonine (Threonine)	Consumption (import)	Clostridium botulinum	[212]
L-Threonine (Threonine)	Consumption (import)	Clostridium difficile	[212]
L-Threonine (Threonine)	Consumption (import)	Clostridium sporogenes	[212]
L-Threonine (Threonine)	Consumption (import)	Clostridium tetani	[212]
L-Threonine (Threonine)	Consumption (import)	Colonocyte (host colon)	[336]
L-Threonine (Threonine)	Production (export)	Escherichia coli	[122]
L-Threonine (Threonine)	Consumption (import)	Fusobacterium nucleatum	[182]
L-Threonine (Threonine)	Consumption (import)	Streptococcus bovis (Streptococcus equinus)	[205]
L-Tryptophan (Tryptophan)	Consumption (import)	Acidovorax avenae	[360]
L-Tryptophan (Tryptophan)	Consumption (import)	Acidovorax delafieldii	[360]
L-Tryptophan (Tryptophan)	Consumption (import)	Bacillus subtilis	[260]
L-Tryptophan (Tryptophan)	Consumption (import)	Baumannia cicadellinicola	[207]
L-Tryptophan (Tryptophan)	Consumption (import) & production (export)	Buchnera aphidicola	[78,241]
L-Tryptophan (Tryptophan)	Consumption (import)	Clostridium botulinum	[86,212]
L-Tryptophan (Tryptophan)	Consumption (import)	Clostridium difficile	[212]
L-Tryptophan (Tryptophan)	Consumption (import)	Clostridium sporogenes	[212,307]
L-Tryptophan (Tryptophan)	Consumption (import)	Clostridium sticklandii	[86]
L-Tryptophan (Tryptophan)	Consumption (import)	Clostridium tetani	[212]
L-Tryptophan (Tryptophan)	Consumption (import)	Colonocyte (host colon)	[336]
L-Tryptophan (Tryptophan)	Consumption (import)	Fibrobacter succinogenes (Bacteroides succinogenes)	[37]
L-Tryptophan (Tryptophan)	Consumption (import)	Odoribacter splanchnicus	[107]
L-Tryptophan (Tryptophan)	Consumption (import)	Ruminococcus albus	[37]
L-Tyrosine (Tyrosine)	Consumption (import)	Achromobacter piechaudii	[156]
L-Tyrosine (Tyrosine)	Consumption (import)	Bacteroides thetaiotaomicron	[307]
L-Tyrosine (Tyrosine)	Consumption (import)	Baumannia cicadellinicola	[368]
L-Tyrosine (Tyrosine)	Consumption (import)	Clostridium botulinum	[86,212]
L-Tyrosine (Tyrosine)	Consumption (import)	Clostridium difficile	[212]
L-Tyrosine (Tyrosine)	Consumption (import)	Clostridium sporogenes	[212]
L-Tyrosine (Tyrosine)	Consumption (import)	Clostridium sticklandii	[86]
L-Tyrosine (Tyrosine)	Consumption (import)	Clostridium tetani	[212]
L-Tyrosine (Tyrosine)	Consumption (import)	Colonocyte (host colon)	[336]
L-Tyrosine (Tyrosine)	Consumption (import)	Streptococcus salivarius	[26]
L-Valine (Valine, D-Valine)	Consumption (import)	Aminobacterium colombiense	[302]
L-Valine (Valine, D-Valine)	Consumption (import)	Anaerotruncus colihominis	[170]
L-Valine (Valine, D-Valine)	Consumption (import)	Bacteroides thetaiotaomicron	[118]
L-Valine (Valine, D-Valine)	Consumption (import)	Baumannia cicadellinicola	[207]
L-Valine (Valine, D-Valine)	Consumption (import)	Clostridium difficile	[212]
L-Valine (Valine, D-Valine)	Consumption (import)	Colonocyte (host colon)	[336]
L-Valine (Valine, D-Valine)	Consumption (import)	Escherichia coli	[6]
L-Valine (Valine, D-Valine)	Consumption (import)	Streptococcus salivarius	[26]
Lactose	Consumption (import)	Actinobacillus succinogenes	[112]
Lactose	Consumption (import)	Aeromonas salmonicida	[2]
Lactose	Consumption (import)	Anaerococcus hydrogenalis	[90]
Lactose	Consumption (import)	Anaerococcus lactolyticus	[90]
Lactose	Consumption (import)	Bacteroides xylanisolvens	[44]
Lactose	Consumption (import)	Bifidobacterium adolescentis	[273,363]
Lactose	Consumption (import)	Bifidobacterium angulatum	[273,363]
Lactose	Consumption (import)	Bifidobacterium animalis	[273,363]
Lactose	Consumption (import)	Bifidobacterium bifidum	[155,273,363]
Lactose	Consumption (import)	Bifidobacterium breve	[273,363]
Lactose	Consumption (import)	Bifidobacterium catenulatum	[273,363]
Lactose	Consumption (import)	Bifidobacterium dentium	[273,363]
Lactose	Consumption (import)	Bifidobacterium gallicum	[273,363]
Lactose	Consumption (import)	Bifidobacterium longum (Bifidobacterium infantis, Bifidobacterium suis)	[273,363,273,363]
Lactose	Consumption (import)	Bifidobacterium pseudocatenulatum	[273,363]
Lactose	Consumption (import)	Blautia hansenii	[181]
Lactose	Consumption (import)	Blautia hydrogenotrophica (Ruminococcus hydrogenotrophicus)	[24]
Lactose	Consumption (import)	Butyrivibrio crossotus	[217]
Lactose	Consumption (import)	Butyrivibrio fibrisolvens	[217]
Lactose	Consumption (import)	Butyrivibrio proteoclasticus	[217]
Lactose	Consumption (import)	Catenibacterium mitsuokai	[146]
Lactose	Consumption (import)	Collinsella aerofaciens (Eubacterium aerofaciens)	[145]
Lactose	Consumption (import)	Collinsella stercoris	[145]
Lactose	Consumption (import)	Coprococcus comes	[124]
Lactose	Consumption (import)	Coprococcus eutactus	[124]
Lactose	Consumption (import)	Dorea formicigenerans	[333]
Lactose	Consumption (import)	Dorea longicatena	[333]
Lactose	Consumption (import)	Enterobacter cancerogenus	[273]
Lactose	Consumption (import)	Enterobacter cloacae	[273]
Lactose	Consumption (import)	Enterococcus casseliflavus	[363]
Lactose	Consumption (import)	Enterococcus faecalis (Streptococcus faecalis)	[363]
Lactose	Consumption (import)	Enterococcus faecium (Streptococcus faecium)	[363]
Lactose	Consumption (import)	Enterococcus gallinarum	[363]
Lactose	Consumption (import)	Enterococcus italicus	[363]
Lactose	Consumption (import)	Escherichia coli	[273,363]
Lactose	Consumption (import)	Eubacterium rectale	[199,301]
Lactose	Consumption (import)	Lactobacillus casei	[337]
Lactose	Consumption (import)	Lactobacillus delbrueckii	[245]
Lactose	Consumption (import)	Lactobacillus gasseri	[385]
Lactose	Consumption (import)	Lactobacillus helveticus	[245,390]
Lactose	Consumption (import)	Lactobacillus johnsonii	[379]
Lactose	Consumption (import)	Lactobacillus paracasei	[380]
Lactose	Consumption (import)	Lactobacillus reuteri	[381]
Lactose	Consumption (import)	Lactobacillus rhamnosus	[380]
Lactose	Consumption (import)	Lactobacillus salivarius	[390]
Lactose	Consumption (import)	Leptotrichia buccalis	[338]
Lactose	Consumption (import)	Leptotrichia goodfellowii	[87,338]
Lactose	Consumption (import)	Leptotrichia hofstadii	[338]
Lactose	Consumption (import)	Leuconostoc mesenteroides	[390]
Lactose	Consumption (import)	Marvinbryantia formatexigens	[364]
Lactose	Consumption (import)	Megamonas hypermegale	[277]
Lactose	Consumption (import)	Odoribacter splanchnicus	[107]
Lactose	Consumption (import)	Parabacteroides distasonis	[276]
Lactose	Consumption (import)	Parabacteroides merdae	[276]
Lactose	Consumption (import)	Pediococcus acidilactici	[382]
Lactose	Consumption (import)	Prevotella copri	[116]
Lactose	Consumption (import)	Propionibacterium freudenreichii (Propionibacterium shermanii)	[163]
Lactose	Consumption (import)	Streptococcus agalactiae	[337]
Lactose	Consumption (import)	Streptococcus anginosus	[337]
Lactose	Consumption (import)	Streptococcus australis	[389,337]
Lactose	Consumption (import)	Streptococcus bovis (Streptococcus equinus)	[337]
Lactose	Consumption (import)	Streptococcus cristatus	[337]
Lactose	Consumption (import)	Streptococcus downei	[337]
Lactose	Consumption (import)	Streptococcus dysgalactiae	[337]
Lactose	Consumption (import)	Streptococcus equi	[337]
Lactose	Consumption (import)	Streptococcus gallolyticus	[337]
Lactose	Consumption (import)	Streptococcus gordonii	[337]
Lactose	Consumption (import)	Streptococcus infantarius	[337]
Lactose	Consumption (import)	Streptococcus infantis	[337]
Lactose	Consumption (import)	Streptococcus mitis	[337]
Lactose	Consumption (import)	Streptococcus mutans	[337]
Lactose	Consumption (import)	Streptococcus oralis	[337]
Lactose	Consumption (import)	Streptococcus parasanguinis	[383,337]
Lactose	Consumption (import)	Streptococcus peroris	[337]
Lactose	Consumption (import)	Streptococcus pneumoniae	[337]
Lactose	Consumption (import)	Streptococcus pseudoporcinus	[337]
Lactose	Consumption (import)	Streptococcus pyogenes	[337]
Lactose	Consumption (import)	Streptococcus salivarius	[390,337]
Lactose	Consumption (import)	Streptococcus sanguinis	[337]
Lactose	Consumption (import)	Streptococcus suis	[337]
Lactose	Consumption (import)	Streptococcus thermophilus	[245,337]
Lactose	Consumption (import)	Streptococcus uberis	[337]
Lactose	Consumption (import)	Streptococcus vestibularis	[384,337]
Lactose	Consumption (import)	Subdoligranulum variabile	[128]
Linoleic acid (Omega-6 fatty acid)	Production (export)	Bifidobacterium breve	[221]
Linoleic acid (Omega-6 fatty acid)	Production (export)	Bifidobacterium pseudocatenulatum	[177]
Linoleic acid (Omega-6 fatty acid)	Consumption (import)	Butyrivibrio fibrisolvens	[115]
Linoleic acid (Omega-6 fatty acid)	Consumption (import)	Butyrivibrio proteoclasticus	[217]
Linoleic acid (Omega-6 fatty acid)	Consumption (import)	Colonocyte (host colon)	[336]
Linoleic acid (Omega-6 fatty acid)	Consumption (import)	Roseburia intestinalis	[184]
Linoleic acid (Omega-6 fatty acid)	Consumption (import)	Roseburia inulinivorans	[184]
Linoleic acid (Omega-6 fatty acid)	Consumption (import)	Ruminococcus albus	[115]
Lithocholic acid	Production (export)	Bacteroides fragilis	[29]
Lithocholic acid	Production (export)	Bacteroides thetaiotaomicron	[29]
Lithocholic acid	Production (export)	Bifidobacterium adolescentis	[29,330]
Lithocholic acid	Production (export)	Bifidobacterium animalis	[330]
Lithocholic acid	Production (export)	Bifidobacterium bifidum	[29,330]
Lithocholic acid	Production (export)	Bifidobacterium breve	[330]
Lithocholic acid	Production (export)	Bifidobacterium longum (Bifidobacterium infantis, Bifidobacterium suis)	[29,330]
Lithocholic acid	Production (export)	Clostridium hiranonis	[208,257]
Lithocholic acid	Production (export)	Clostridium hylemonae	[208]
Lithocholic acid	Production (export)	Clostridium leptum	[29,98,208]
Lithocholic acid	Production (export)	Clostridium perfringens	[29]
Lithocholic acid	Production (export)	Clostridium scindens	[29,98,208,257]
Lithocholic acid	Production (export)	Lactobacillus acidophilus	[16,330]
Lithocholic acid	Production (export)	Lactobacillus brevis	[330]
Lithocholic acid	Production (export)	Lactobacillus buchneri	[330]
Lithocholic acid	Production (export)	Lactobacillus gasseri	[16,330]
Lithocholic acid	Production (export)	Lactobacillus hilgardii	[330]
Lithocholic acid	Production (export)	Lactobacillus plantarum	[16,29,330]
Lithocholic acid	Production (export)	Listeria monocytogenes	[16,17]
Malonate	Consumption (import)	Achromobacter piechaudii	[151]
Maltose	Consumption (import)	Anaerotruncus colihominis	[170]
Maltose	Consumption (import)	Bacteroides xylanisolvens	[44]
Maltose	Consumption (import)	Bifidobacterium adolescentis	[345]
Maltose	Consumption (import)	Bifidobacterium longum (Bifidobacterium infantis, Bifidobacterium suis)	[345]
Maltose	Consumption (import)	Blautia hydrogenotrophica (Ruminococcus hydrogenotrophicus)	[24]
Maltose	Consumption (import)	Butyrivibrio crossotus	[217]
Maltose	Consumption (import)	Butyrivibrio fibrisolvens	[217]
Maltose	Consumption (import)	Butyrivibrio proteoclasticus	[217]
Maltose	Consumption (import)	Catenibacterium mitsuokai	[146]
Maltose	Consumption (import)	Collinsella aerofaciens (Eubacterium aerofaciens)	[145,333]
Maltose	Consumption (import)	Collinsella stercoris	[145]
Maltose	Consumption (import)	Coprococcus comes	[124]
Maltose	Consumption (import)	Coprococcus eutactus	[124]
Maltose	Consumption (import)	Desulfovibrio piger	[88]
Maltose	Consumption (import)	Dorea formicigenerans	[333]
Maltose	Consumption (import)	Dorea longicatena	[333]
Maltose	Consumption (import)	Escherichia coli	[6,29,205]
Maltose	Consumption (import)	Eubacterium rectale	[301]
Maltose	Consumption (import)	Flavobacterium johnsoniae	[425]
Maltose	Consumption (import)	Leptotrichia buccalis	[87,338]
Maltose	Consumption (import)	Leptotrichia goodfellowii	[338]
Maltose	Consumption (import)	Leptotrichia hofstadii	[87,338]
Maltose	Consumption (import)	Marvinbryantia formatexigens	[364]
Maltose	Consumption (import)	Megamonas hypermegale	[277]
Maltose	Consumption (import)	Parabacteroides merdae	[276]
Maltose	Consumption (import)	Prevotella copri	[116]
Maltose	Consumption (import)	Pyrococcus furiosus	[6,160]
Maltose	Consumption (import)	Roseburia intestinalis	[83]
Maltose	Consumption (import)	Ruminococcus bromii	[121]
Maltose	Consumption (import)	Ruminococcus obeum	[181]
Maltose	Consumption (import)	Streptococcus bovis (Streptococcus equinus)	[205]
Maltose	Consumption (import)	Streptococcus gordonii	[141]
Maltose	Consumption (import)	Subdoligranulum variabile	[128]
Maltose	Consumption (import)	Sulfolobus solfataricus	[6,7]
Maltose	Consumption (import)	Thermotoga maritima	[160]
Melibiose	Consumption (import)	Aeromonas hydrophila	[2]
Melibiose	Consumption (import)	Bacteroides xylanisolvens	[44]
Melibiose	Consumption (import)	Coprococcus eutactus	[124]
Melibiose	Consumption (import)	Holdemania filiformis	[358]
Melibiose	Consumption (import)	Leptotrichia buccalis	[87]
Melibiose	Consumption (import)	Megamonas hypermegale	[277]
Melibiose	Consumption (import)	Roseburia intestinalis	[83]
Melibiose	Consumption (import)	Subdoligranulum variabile	[128]
Menaquinone (Vitamin K2)	Production (export)	Bacillus cereus	[22]
Menaquinone (Vitamin K2)	Production (export)	Bacillus megaterium	[22]
Menaquinone (Vitamin K2)	Production (export)	Bacillus mycoides	[22]
Menaquinone (Vitamin K2)	Production (export)	Bacillus subtilis	[22,39]
Menaquinone (Vitamin K2)	Production (export)	Bacteroides fragilis	[22]
Menaquinone (Vitamin K2)	Production (export)	Bacteroides ovatus	[58]
Menaquinone (Vitamin K2)	Production (export)	Bacteroides thetaiotaomicron	[118]
Menaquinone (Vitamin K2)	Production (export)	Bacteroides vulgatus	[57]
Menaquinone (Vitamin K2)	Consumption (import)	Baumannia cicadellinicola	[207]
Menaquinone (Vitamin K2)	Consumption (import)	Bifidobacterium adolescentis	[123]
Menaquinone (Vitamin K2)	Consumption (import)	Bifidobacterium bifidum	[123]
Menaquinone (Vitamin K2)	Consumption (import)	Bifidobacterium dentium	[123]
Menaquinone (Vitamin K2)	Consumption (import)	Bifidobacterium longum (Bifidobacterium infantis, Bifidobacterium suis)	[123]
Menaquinone (Vitamin K2)	Production (export)	Brevibacillus brevis	[22]
Menaquinone (Vitamin K2)	Consumption (import)	Colonocyte (host colon)	[56,336]
Menaquinone (Vitamin K2)	Production (export)	Corynebacterium diphtheriae	[22]
Menaquinone (Vitamin K2)	Production (export)	Eggerthella lenta	[362]
Menaquinone (Vitamin K2)	Production (export)	Enterococcus faecalis (Streptococcus faecalis)	[22,58]
Menaquinone (Vitamin K2)	Production (export)	Enterococcus faecium (Streptococcus faecium)	[58,58]
Menaquinone (Vitamin K2)	Production (export)	Escherichia coli	[22,39,58]
Menaquinone (Vitamin K2)	Consumption (import)	Haemophilus parainfluenzae	[22]
Menaquinone (Vitamin K2)	Production (export)	Lactococcus lactis	[173]
Menaquinone (Vitamin K2)	Consumption (import)	Mycobacterium avium	[22]
Menaquinone (Vitamin K2)	Consumption (import)	Mycobacterium leprae	[22]
Menaquinone (Vitamin K2)	Production (export)	Mycobacterium smegmatis	[22]
Menaquinone (Vitamin K2)	Production (export)	Mycobacterium tuberculosis	[22]
Menaquinone (Vitamin K2)	Consumption (import)	Porphyromonas gingivalis	[123]
Menaquinone (Vitamin K2)	Production (export)	Prevotella buccae	[58]
Menaquinone (Vitamin K2)	Consumption (import)	Prevotella melaninogenica (Bacteroides melaninogenicus)	[22,259]
Menaquinone (Vitamin K2)	Consumption (import)	Propionibacterium acnes	[22]
Menaquinone (Vitamin K2)	Production (export)	Staphylococcus aureus	[22,56,57]
Menaquinone (Vitamin K2)	Production (export)	Staphylococcus capitis	[58]
Menaquinone (Vitamin K2)	Production (export)	Staphylococcus epidermidis	[58]
Menaquinone (Vitamin K2)	Production (export)	Staphylococcus haemolyticus	[58]
Menaquinone (Vitamin K2)	Production (export)	Staphylococcus warneri	[58]
meso-Tartrate (meso-Tartaric acid, Tartrate, L-tartrate, L-Tartaric acid)	Consumption (import)	Acidovorax avenae	[360]
meso-Tartrate (meso-Tartaric acid, Tartrate, L-tartrate, L-Tartaric acid)	Consumption (import)	Acidovorax delafieldii	[360]
Methane (CH4)	Production (export)	Methanobrevibacter ruminantium	[172,327,Supplementary Data 2d]
Methane (CH4)	Production (export)	Methanobrevibacter smithii	[46,172,199,281,301,Supplementary Data 2d]
Methane (CH4)	Production (export)	Methanocaldococcus fervens	[Supplementary Data 2d]
Methane (CH4)	Production (export)	Methanocaldococcus infernus	[Supplementary Data 2d]
Methane (CH4)	Production (export)	Methanocaldococcus jannaschii	[Supplementary Data 2d]
Methane (CH4)	Production (export)	Methanocaldococcus vulcanius	[Supplementary Data 2d]
Methane (CH4)	Production (export)	Methanocella paludicola	[Supplementary Data 2d]
Methane (CH4)	Production (export)	Methanococcoides burtonii	[Supplementary Data 2d]
Methane (CH4)	Production (export)	Methanococcus aeolicus	[Supplementary Data 2d]
Methane (CH4)	Production (export)	Methanococcus maripaludis	[157,322,Supplementary Data 2d]
Methane (CH4)	Production (export)	Methanococcus vannielii	[Supplementary Data 2d]
Methane (CH4)	Production (export)	Methanococcus voltae	[Supplementary Data 2d]
Methane (CH4)	Production (export)	Methanocorpusculum labreanum	[Supplementary Data 2d]
Methane (CH4)	Production (export)	Methanoculleus marisnigri	[Supplementary Data 2d]
Methane (CH4)	Production (export)	Methanohalobium evestigatum	[Supplementary Data 2d]
Methane (CH4)	Production (export)	Methanohalophilus mahii	[Supplementary Data 2d]
Methane (CH4)	Production (export)	Methanoplanus petrolearius	[Supplementary Data 2d]
Methane (CH4)	Production (export)	Methanopyrus kandleri	[Supplementary Data 2d]
Methane (CH4)	Production (export)	Methanoregula boonei	[Supplementary Data 2d]
Methane (CH4)	Production (export)	Methanosaeta thermophila	[Supplementary Data 2d]
Methane (CH4)	Production (export)	Methanosarcina acetivorans	[20,81,Supplementary Data 2d,180]
Methane (CH4)	Production (export)	Methanosarcina barkeri	[109,351,Supplementary Data 2d,180]
Methane (CH4)	Production (export)	Methanosarcina mazei	[319,Supplementary Data 2d,180]
Methane (CH4)	Production (export)	Methanosphaera stadtmanae	[Supplementary Data 2d]
Methane (CH4)	Production (export)	Methanosphaerula palustris	[426]
Methane (CH4)	Production (export)	Methanospirillum hungatei	[Supplementary Data 2d]
Methane (CH4)	Production (export)	Methanothermobacter marburgensis	[Supplementary Data 2d,180]
Methane (CH4)	Production (export)	Methanothermobacter thermautotrophicus	[Supplementary Data 2d,180]
Methane (CH4)	Production (export)	Methanothermococcus okinawensis	[Supplementary Data 2d]
Methane (CH4)	Production (export)	Methanothermus fervidus	[Supplementary Data 2d]
Methane (CH4)	Consumption (import)	Methylacidiphilum infernorum	[52]
Methane (CH4)	Consumption (import)	Methylobacter tundripaludum	[Supplementary Data 2d]
Methane (CH4)	Consumption (import)	Methylobacterium extorquens (Methylobacterium chloromethanicum)	[51]
Methane (CH4)	Consumption (import)	Methylobacterium populi	[Supplementary Data 2d]
Methane (CH4)	Consumption (import)	Methylocella silvestris	[51,Supplementary Data 2d]
Methane (CH4)	Consumption (import)	Methylococcus capsulatus	[51,51,356,Supplementary Data 2d]
Methane (CH4)	Consumption (import)	Methylophaga thiooxidans	[Supplementary Data 2d]
Methane (CH4)	Consumption (import)	Methylosinus trichosporium	[Supplementary Data 2d]
Methane (CH4)	Consumption (import)	Paracoccus denitrificans	[51]
Methanol	Production (export)	Bacteroides thetaiotaomicron	[118]
Methanol	Production (export)	Escherichia coli	[33]
Methanol	Consumption (import)	Eubacterium limosum	[319]
Methanol	Consumption (import)	Granulibacter bethesdensis	[51]
Methanol	Consumption (import)	Klebsiella pneumoniae	[133]
Methanol	Consumption (import)	Methanobrevibacter smithii	[223,282]
Methanol	Consumption (import)	Methanosarcina acetivorans	[20,28,180,318,319]
Methanol	Consumption (import)	Methanosarcina barkeri	[109,28,180,318,319]
Methanol	Consumption (import)	Methanosarcina mazei	[28,180,318,319]
Methanol	Consumption (import)	Methanosphaera stadtmanae	[180,223,28,180]
Methanol	Consumption (import)	Methylibium petroleiphilum	[51,51]
Methanol	Consumption (import)	Methylobacillus flagellatus	[51,52]
Methanol	Consumption (import)	Methylobacterium extorquens (Methylobacterium chloromethanicum)	[51,52]
Methanol	Consumption (import)	Methylobacterium nodulans	[427]
Methanol	Consumption (import)	Methylocella silvestris	[51]
Methanol	Consumption (import)	Methylococcus capsulatus	[51,356]
Methanol	Consumption (import)	Methylotenera mobilis	[51,51]
Methanol	Consumption (import)	Moorella thermoacetica	[81,302]
Methanol	Consumption (import)	Paracoccus denitrificans	[52]
Methanol	Consumption (import)	Pelobacter carbinolicus	[302]
Methanol	Consumption (import)	Pelotomaculum thermopropionicum	[302]
Methanol	Consumption (import)	Pseudomonas mendocina	[133]
Methanol	Consumption (import)	Ralstonia pickettii	[133]
Methylamine (Monomethylamine)	Production (export)	Bifidobacterium adolescentis	[308]
Methylamine (Monomethylamine)	Production (export)	Bifidobacterium bifidum	[308]
Methylamine (Monomethylamine)	Production (export)	Clostridium difficile	[308]
Methylamine (Monomethylamine)	Production (export)	Clostridium perfringens	[308]
Methylamine (Monomethylamine)	Production (export)	Faecalibacterium prausnitzii	[230]
Methylamine (Monomethylamine)	Consumption (import)	Klebsiella pneumoniae	[133]
Methylamine (Monomethylamine)	Consumption (import)	Methanococcoides burtonii	[180]
Methylamine (Monomethylamine)	Consumption (import)	Methanohalobium evestigatum	[180]
Methylamine (Monomethylamine)	Consumption (import)	Methanohalophilus mahii	[28,180]
Methylamine (Monomethylamine)	Consumption (import)	Methanosarcina acetivorans	[28,180,318,319]
Methylamine (Monomethylamine)	Consumption (import)	Methanosarcina barkeri	[109,28,180,318,319]
Methylamine (Monomethylamine)	Consumption (import)	Methanosarcina mazei	[28,180,318,319]
Methylamine (Monomethylamine)	Consumption (import)	Methanosphaera stadtmanae	[28]
Methylamine (Monomethylamine)	Consumption (import)	Methylobacillus flagellatus	[51,51,52]
Methylamine (Monomethylamine)	Consumption (import)	Methylobacterium extorquens (Methylobacterium chloromethanicum)	[51]
Methylamine (Monomethylamine)	Consumption (import)	Paracoccus denitrificans	[52]
Methylamine (Monomethylamine)	Consumption (import)	Pseudomonas mendocina	[51,133]
Methylamine (Monomethylamine)	Consumption (import)	Ralstonia pickettii	[133]
Mg2+ (Magnesium)	Consumption (import)	Colonocyte (host colon)	[336]
Mn2+ (Manganese)	Consumption (import)	Geobacter metallireducens	[186]
Mn2+ (Manganese)	Consumption (import)	Shewanella putrefaciens (Pseudomonas putrefaciens)	[186]
Mucin (Mucus Glycoprotein)	Macromolecule degradation	Akkermansia muciniphila	[73,74,155,328,372]
Mucin (Mucus Glycoprotein)	Macromolecule degradation	Bacteroides caccae	[193,328]
Mucin (Mucus Glycoprotein)	Macromolecule degradation	Bacteroides fragilis	[73,74,103,155,161,193,194,206,328]
Mucin (Mucus Glycoprotein)	Macromolecule degradation	Bacteroides thetaiotaomicron	[74,118,155,161,161,193,204,228,255,256,311,328]
Mucin (Mucus Glycoprotein)	Macromolecule degradation	Bacteroides uniformis	[193]
Mucin (Mucus Glycoprotein)	Macromolecule degradation	Bacteroides vulgatus	[74,206,328]
Mucin (Mucus Glycoprotein)	Macromolecule degradation	Bifidobacterium bifidum	[60,62,74,129,150,155,206,269,328]
Mucin (Mucus Glycoprotein)	Macromolecule degradation	Bifidobacterium breve	[206,269,328]
Mucin (Mucus Glycoprotein)	Macromolecule degradation	Bifidobacterium longum (Bifidobacterium infantis, Bifidobacterium suis)	[60,73,74,150,155,269,328]
Mucin (Mucus Glycoprotein)	Macromolecule degradation	Clostridium butyricum	[206]
Mucin (Mucus Glycoprotein)	Macromolecule degradation	Clostridium perfringens	[73,375]
Mucin (Mucus Glycoprotein)	Macromolecule degradation	Enterococcus faecalis (Streptococcus faecalis)	[60]
Mucin (Mucus Glycoprotein)	Production (export)	Goblet cell (host colon)	—
Mucin (Mucus Glycoprotein)	Macromolecule degradation	Helicobacter pylori	[72,74]
Mucin (Mucus Glycoprotein)	Macromolecule degradation	Lactobacillus gasseri	[328]
Mucin (Mucus Glycoprotein)	Macromolecule degradation	Mitsuokella multacida	[155]
Mucin (Mucus Glycoprotein)	Macromolecule degradation	Parabacteroides distasonis	[193]
Mucin (Mucus Glycoprotein)	Macromolecule degradation	Porphyromonas gingivalis	[74]
Mucin (Mucus Glycoprotein)	Macromolecule degradation	Ruminococcus gnavus	[60,328]
Mucin (Mucus Glycoprotein)	Macromolecule degradation	Ruminococcus lactaris	[74]
Mucin (Mucus Glycoprotein)	Macromolecule degradation	Ruminococcus torques	[60,74,129,328]
Mucin (Mucus Glycoprotein)	Macromolecule degradation	Streptococcus anginosus	[74]
Mucin (Mucus Glycoprotein)	Macromolecule degradation	Streptococcus mutans	[74]
Mucin (Mucus Glycoprotein)	Macromolecule degradation	Streptococcus oralis	[74]
Mucin (Mucus Glycoprotein)	Macromolecule degradation	Streptococcus sanguinis	[74]
Mucin (Mucus Glycoprotein)	Macromolecule degradation	Vibrio cholerae	[74]
Myristic acid (Tetradecanoic acid, Tetradecanoate)	Consumption (import)	Colonocyte (host colon)	[336]
Myristic acid (Tetradecanoic acid, Tetradecanoate)	Consumption (import)	Syntrophomonas wolfei	[314]
N-Acetyl-D-Glucosamine (N-Acetylglucosamine)	Consumption (import)	Anaerotruncus colihominis	[170]
N-Acetyl-D-Glucosamine (N-Acetylglucosamine)	Consumption (import)	Bacteroides ovatus	[204]
N-Acetyl-D-Glucosamine (N-Acetylglucosamine)	Consumption (import)	Bacteroides thetaiotaomicron	[118,204]
N-Acetyl-D-Glucosamine (N-Acetylglucosamine)	Consumption (import)	Faecalibacterium prausnitzii	[95]
N-Acetyl-D-Glucosamine (N-Acetylglucosamine)	Consumption (import)	Marvinbryantia formatexigens	[256]
N-Acetyl-D-Glucosamine (N-Acetylglucosamine)	Consumption (import)	Subdoligranulum variabile	[128]
N-Acetyl-D-mannosamine	Consumption (import)	Anaerotruncus colihominis	[170]
N-Acetyl-D-mannosamine	Consumption (import)	Subdoligranulum variabile	[128]
N-Acetylgalactosamine (N-Acetyl-D-galactosamine)	Consumption (import)	Bacteroides ovatus	[204]
N-Acetylgalactosamine (N-Acetyl-D-galactosamine)	Consumption (import)	Bacteroides thetaiotaomicron	[118,204]
N-Acetylneuraminic acid (N-acetylneuraminate, Neu5Ac, Sialic acid)	Consumption (import)	Anaerotruncus colihominis	[328]
N-Acetylneuraminic acid (N-acetylneuraminate, Neu5Ac, Sialic acid)	Consumption (import)	Bacteroides thetaiotaomicron	[118]
N-Acetylneuraminic acid (N-acetylneuraminate, Neu5Ac, Sialic acid)	Consumption (import)	Clostridium difficile	[228,328]
N-Acetylneuraminic acid (N-acetylneuraminate, Neu5Ac, Sialic acid)	Consumption (import)	Dorea formicigenerans	[328]
N-Acetylneuraminic acid (N-acetylneuraminate, Neu5Ac, Sialic acid)	Consumption (import)	Dorea longicatena	[328]
N-Acetylneuraminic acid (N-acetylneuraminate, Neu5Ac, Sialic acid)	Consumption (import)	Faecalibacterium prausnitzii	[328]
N-Acetylneuraminic acid (N-acetylneuraminate, Neu5Ac, Sialic acid)	Consumption (import)	Fusobacterium nucleatum	[328]
N-Acetylneuraminic acid (N-acetylneuraminate, Neu5Ac, Sialic acid)	Consumption (import)	Lactobacillus plantarum	[328]
N-Acetylneuraminic acid (N-acetylneuraminate, Neu5Ac, Sialic acid)	Consumption (import)	Lactobacillus sakei	[328]
N-Acetylneuraminic acid (N-acetylneuraminate, Neu5Ac, Sialic acid)	Consumption (import)	Ruminococcus gnavus	[328]
N2	Consumption (import)	Agrobacterium tumefaciens (Rhizobium radiobacter)	[Supplementary Data 2d]
N2	Consumption (import)	Anabaena azollae	[Supplementary Data 2d]
N2	Consumption (import)	Anabaena variabilis	[Supplementary Data 2d]
N2	Consumption (import)	Azorhizobium caulinodans	[Supplementary Data 2d]
N2	Consumption (import)	Azotobacter vinelandii	[Supplementary Data 2d]
N2	Production (export)	Bacillus amyloliquefaciens	[339]
N2	Production (export)	Bacillus anthracis	[339]
N2	Production (export)	Bacillus atrophaeus	[339]
N2	Production (export)	Bacillus cellulosilyticus	[339]
N2	Production (export)	Bacillus cereus	[339]
N2	Production (export)	Bacillus clausii	[339]
N2	Production (export)	Bacillus coagulans	[339]
N2	Production (export)	Bacillus coahuilensis	[339]
N2	Production (export)	Bacillus halodurans	[339]
N2	Production (export)	Bacillus licheniformis	[339]
N2	Production (export)	Bacillus megaterium	[339]
N2	Production (export)	Bacillus mycoides	[339]
N2	Production (export)	Bacillus pseudofirmus	[339]
N2	Production (export)	Bacillus pseudomycoides	[339]
N2	Production (export)	Bacillus pumilus	[339]
N2	Production (export)	Bacillus selenitireducens	[339]
N2	Production (export)	Bacillus subtilis	[339]
N2	Production (export)	Bacillus thuringiensis	[339]
N2	Production (export)	Bacillus weihenstephanensis	[339]
N2	Consumption (import)	Beijerinckia indica	[Supplementary Data 2d]
N2	Consumption (import)	Burkholderia phymatum	[51]
N2	Consumption (import)	Clostridium butyricum	[188]
N2	Consumption (import)	Ensifer meliloti (Sinorhizobium meliloti)	[Supplementary Data 2d]
N2	Consumption (import)	Frankia alni	[Supplementary Data 2d]
N2	Consumption (import)	Frankia symbiont	[Supplementary Data 2d]
N2	Consumption (import)	Geobacter metallireducens	[222]
N2	Consumption (import)	Geobacter sulfurreducens	[222]
N2	Consumption (import)	Klebsiella pneumoniae	[Supplementary Data 2d]
N2	Consumption (import)	Mesorhizobium ciceri	[Supplementary Data 2d]
N2	Consumption (import)	Mesorhizobium loti	[Supplementary Data 2d]
N2	Consumption (import)	Mesorhizobium opportunistum	[Supplementary Data 2d]
N2	Consumption (import)	Methylobacterium nodulans	[427]
N2	Consumption (import)	Methylococcus capsulatus	[356]
N2	Consumption (import)	Nostoc punctiforme	[Supplementary Data 2d]
N2	Consumption (import)	Paenibacillus polymyxa	[Supplementary Data 2d]
N2	Production (export)	Pseudomonas aeruginosa	[339]
N2	Production (export)	Pseudomonas entomophila	[339]
N2	Production (export)	Pseudomonas fluorescens	[339]
N2	Production (export)	Pseudomonas mendocina	[339]
N2	Production (export)	Pseudomonas putida	[339]
N2	Production (export)	Pseudomonas savastanoi	[339]
N2	Production (export)	Pseudomonas stutzeri	[339]
N2	Production (export)	Pseudomonas syringae	[339]
N2	Consumption (import)	Rhizobium etli	[Supplementary Data 2d]
N2	Consumption (import)	Rhizobium leguminosarum	[Supplementary Data 2d]
N2	Consumption (import)	Rhodobacter capsulatus	[Supplementary Data 2d]
N2	Consumption (import)	Rhodobacter sphaeroides	[Supplementary Data 2d]
N2	Consumption (import)	Rhodopseudomonas palustris	[Supplementary Data 2d]
Na+ (Sodium)	Consumption (import)	Colonocyte (host colon)	[336,340,370]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Acidaminococcus fermentans	[41,88,263]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Agrobacterium tumefaciens (Rhizobium radiobacter)	[Supplementary Data 2d]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Anabaena azollae	[Supplementary Data 2d]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Anabaena variabilis	[Supplementary Data 2d]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Azorhizobium caulinodans	[Supplementary Data 2d]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Azotobacter vinelandii	[Supplementary Data 2d]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Bacillus subtilis	[329]
NH3 (Ammonia, NH4+, Ammonium)	Consumption (import)	Bacteroides caccae	[92,198]
NH3 (Ammonia, NH4+, Ammonium)	Consumption (import)	Bacteroides cellulosilyticus	[92,198]
NH3 (Ammonia, NH4+, Ammonium)	Consumption (import)	Bacteroides coprocola	[92,198]
NH3 (Ammonia, NH4+, Ammonium)	Consumption (import)	Bacteroides coprophilus	[92,198]
NH3 (Ammonia, NH4+, Ammonium)	Consumption (import)	Bacteroides dorei	[92,198]
NH3 (Ammonia, NH4+, Ammonium)	Consumption (import)	Bacteroides eggerthii	[92,198]
NH3 (Ammonia, NH4+, Ammonium)	Consumption (import)	Bacteroides finegoldii (Alistipes finegoldii)	[92,198]
NH3 (Ammonia, NH4+, Ammonium)	Consumption (import) & production (export)	Bacteroides fragilis	[195,198,307,343,347,92,198]
NH3 (Ammonia, NH4+, Ammonium)	Consumption (import)	Bacteroides helcogenes	[92,198]
NH3 (Ammonia, NH4+, Ammonium)	Consumption (import)	Bacteroides intestinalis	[92,198]
NH3 (Ammonia, NH4+, Ammonium)	Consumption (import) & production (export)	Bacteroides ovatus	[347,92,198]
NH3 (Ammonia, NH4+, Ammonium)	Consumption (import)	Bacteroides pectinophilus	[92,198]
NH3 (Ammonia, NH4+, Ammonium)	Consumption (import)	Bacteroides plebeius	[92,198]
NH3 (Ammonia, NH4+, Ammonium)	Consumption (import)	Bacteroides salanitronis	[92,198]
NH3 (Ammonia, NH4+, Ammonium)	Consumption (import)	Bacteroides stercoris	[92,198]
NH3 (Ammonia, NH4+, Ammonium)	Consumption (import) & production (export)	Bacteroides thetaiotaomicron	[195,198,92,198]
NH3 (Ammonia, NH4+, Ammonium)	Consumption (import)	Bacteroides uniformis	[92,198]
NH3 (Ammonia, NH4+, Ammonium)	Consumption (import) & production (export)	Bacteroides vulgatus	[195,198,347,92,198]
NH3 (Ammonia, NH4+, Ammonium)	Consumption (import)	Bacteroides xylanisolvens	[92,198]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Beijerinckia indica	[Supplementary Data 2d]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Bilophila wadsworthia	[169,304]
NH3 (Ammonia, NH4+, Ammonium)	Consumption (import)	Buchnera aphidicola	[78]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Butyrivibrio fibrisolvens	[61,351]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Caminibacter mediatlanticus	[349]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Clostridium acetobutylicum	[211,316,347]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Clostridium asparagiforme	[211,316,347]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Clostridium bartlettii	[211,316,347]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Clostridium beijerinckii	[211,316,347]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Clostridium bolteae	[211,316,347]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Clostridium botulinum	[211,211,316,347]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Clostridium butyricum	[211,316,347]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Clostridium carboxidivorans	[211,316,347]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Clostridium cellulolyticum	[211,316,347]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Clostridium cellulovorans	[211,316,347]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Clostridium cf	[211,316,347]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Clostridium difficile	[211,316,347]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Clostridium hathewayi	[211,316,347]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Clostridium hiranonis	[211,316,347]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Clostridium hylemonae	[211,316,347]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Clostridium kluyveri	[211,316,347]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Clostridium leptum	[211,316,347]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Clostridium ljungdahlii	[211,316,347]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Clostridium methylpentosum	[211,316,347]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Clostridium nexile	[211,316,347]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Clostridium novyi	[211,316,347]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Clostridium papyrosolvens	[211,316,347]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Clostridium perfringens	[347,211,316,347]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Clostridium phytofermentans	[211,316,347]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Clostridium saccharolyticum	[211,316,347]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Clostridium scindens	[211,316,347]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Clostridium sporogenes	[306,211,316,347]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Clostridium sticklandii	[9,88,211,351,211,316,347]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Clostridium symbiosum	[211,316,347]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Clostridium tetani	[306,211,316,347]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Clostridium thermocellum	[211,316,347]
NH3 (Ammonia, NH4+, Ammonium)	Consumption (import)	Colonocyte (host colon)	[132,336,340]
NH3 (Ammonia, NH4+, Ammonium)	Consumption (import) & production (export)	Desulfovibrio piger	[88,255]
NH3 (Ammonia, NH4+, Ammonium)	Consumption (import)	Desulfovibrio vulgaris	[157]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Ensifer meliloti (Sinorhizobium meliloti)	[Supplementary Data 2d]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Enterobacter cancerogenus	[347]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Enterobacter cloacae	[347]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Enterococcus faecalis (Streptococcus faecalis)	[195,347]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Enterococcus faecium (Streptococcus faecium)	[347]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Escherichia coli	[329,346,347]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Faecalibacterium prausnitzii	[347]
NH3 (Ammonia, NH4+, Ammonium)	Consumption (import)	Fibrobacter succinogenes (Bacteroides succinogenes)	[37,198]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Frankia alni	[Supplementary Data 2d]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Frankia symbiont	[Supplementary Data 2d]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Fusobacterium nucleatum	[306]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Geobacter metallireducens	[186]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Helicobacter pylori	[105,209]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Klebsiella pneumoniae	[Supplementary Data 2d,346]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Klebsiella variicola	[346]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Mesorhizobium ciceri	[Supplementary Data 2d]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Mesorhizobium loti	[Supplementary Data 2d]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Mesorhizobium opportunistum	[Supplementary Data 2d]
NH3 (Ammonia, NH4+, Ammonium)	Consumption (import)	Methanobrevibacter smithii	[282]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Methanococcus maripaludis	[157]
NH3 (Ammonia, NH4+, Ammonium)	Consumption (import)	Methylococcus capsulatus	[356]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Micrococcus luteus	[347]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Mycoplasma agalactiae	[316]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Mycoplasma alligatoris	[316]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Mycoplasma arthritidis	[316]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Mycoplasma bovis	[316]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Mycoplasma capricolum	[316]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Mycoplasma conjunctivae	[316]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Mycoplasma crocodyli	[316]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Mycoplasma fermentans	[316]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Mycoplasma gallisepticum	[316]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Mycoplasma genitalium	[316]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Mycoplasma haemofelis	[316]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Mycoplasma hominis	[316]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Mycoplasma hyopneumoniae	[316]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Mycoplasma hyorhinis	[316]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Mycoplasma leachii	[316]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Mycoplasma mobile	[316]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Mycoplasma mycoides	[316]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Mycoplasma penetrans	[316]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Mycoplasma pneumoniae	[316]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Mycoplasma pulmonis	[316]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Mycoplasma synoviae	[316]
NH3 (Ammonia, NH4+, Ammonium)	Consumption (import)	Nitrosococcus halophilus	[Supplementary Data 2d]
NH3 (Ammonia, NH4+, Ammonium)	Consumption (import)	Nitrosococcus oceani	[Supplementary Data 2d]
NH3 (Ammonia, NH4+, Ammonium)	Consumption (import)	Nitrosococcus watsoni	[Supplementary Data 2d]
NH3 (Ammonia, NH4+, Ammonium)	Consumption (import)	Nitrosomonas europaea	[Supplementary Data 2d]
NH3 (Ammonia, NH4+, Ammonium)	Consumption (import)	Nitrosomonas eutropha	[Supplementary Data 2d]
NH3 (Ammonia, NH4+, Ammonium)	Consumption (import)	Nitrosopumilus maritimus	[Supplementary Data 2d]
NH3 (Ammonia, NH4+, Ammonium)	Consumption (import)	Nitrosospira multiformis	[Supplementary Data 2d]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Nostoc punctiforme	[Supplementary Data 2d]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Paenibacillus polymyxa	[Supplementary Data 2d]
NH3 (Ammonia, NH4+, Ammonium)	Consumption (import)	Parabacteroides distasonis	[198]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Peptostreptococcus anaerobius	[9,88,211,351,316]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Peptostreptococcus stomatis	[316]
NH3 (Ammonia, NH4+, Ammonium)	Consumption (import) & production (export)	Prevotella ruminicola (Bacteroides ruminicola)	[47,49,198,211,244,271,307,343,347,351]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Proteus mirabilis	[346,347,346]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Proteus penneri	[346]
NH3 (Ammonia, NH4+, Ammonium)	Consumption (import) & production (export)	Pseudomonas aeruginosa	[273,346]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Pseudomonas entomophila	[346]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Pseudomonas fluorescens	[346]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Pseudomonas mendocina	[346]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Pseudomonas putida	[346]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Pseudomonas savastanoi	[346]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Pseudomonas stutzeri	[346]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Pseudomonas syringae	[346]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Rhizobium etli	[Supplementary Data 2d]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Rhizobium leguminosarum	[Supplementary Data 2d]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Rhodobacter capsulatus	[Supplementary Data 2d]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Rhodobacter sphaeroides	[Supplementary Data 2d]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Rhodopseudomonas palustris	[Supplementary Data 2d]
NH3 (Ammonia, NH4+, Ammonium)	Consumption (import)	Ruminococcus albus	[37,121]
NH3 (Ammonia, NH4+, Ammonium)	Consumption (import)	Ruminococcus bromii	[121]
NH3 (Ammonia, NH4+, Ammonium)	Consumption (import)	Ruminococcus flavefaciens	[37]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Streptococcus agalactiae	[316,347]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Streptococcus anginosus	[316,347]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Streptococcus australis	[316,347]
NH3 (Ammonia, NH4+, Ammonium)	Consumption (import) & production (export)	Streptococcus bovis (Streptococcus equinus)	[37,205,351,316,347]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Streptococcus cristatus	[316,347]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Streptococcus downei	[316,347]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Streptococcus dysgalactiae	[316,347]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Streptococcus equi	[205,351,316,347]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Streptococcus gallolyticus	[316,347]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Streptococcus gordonii	[316,347]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Streptococcus infantarius	[316,347]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Streptococcus infantis	[316,347]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Streptococcus mitis	[316,347]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Streptococcus mutans	[316,347]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Streptococcus oralis	[316,347]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Streptococcus parasanguinis	[316,347]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Streptococcus peroris	[316,347]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Streptococcus pneumoniae	[316,347]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Streptococcus pseudoporcinus	[316,347]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Streptococcus pyogenes	[316,347]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Streptococcus salivarius	[316,347]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Streptococcus sanguinis	[316,347]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Streptococcus suis	[316,347]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Streptococcus thermophilus	[316,347]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Streptococcus uberis	[316,347]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Streptococcus vestibularis	[316,347]
NH3 (Ammonia, NH4+, Ammonium)	Consumption (import)	Thiobacillus denitrificans	[10]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Ureaplasma parvum	[235,273]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Ureaplasma urealyticum	[235,273]
NH3 (Ammonia, NH4+, Ammonium)	Production (export)	Wolinella succinogenes	[59]
NH3 (Ammonia, NH4+, Ammonium)	Consumption (import)	Xylella fastidiosa	[368]
Niacin (Vitamin B3, Nicotinic acid, Nicotinate, Nicotinamide, Vitamin B3)	Production (export)	Baumannia cicadellinicola	[368]
Niacin (Vitamin B3, Nicotinic acid, Nicotinate, Nicotinamide, Vitamin B3)	Consumption (import)	Brucella abortus	[242]
Niacin (Vitamin B3, Nicotinic acid, Nicotinate, Nicotinamide, Vitamin B3)	Consumption (import)	Brucella melitensis	[242]
Niacin (Vitamin B3, Nicotinic acid, Nicotinate, Nicotinamide, Vitamin B3)	Consumption (import)	Brucella suis	[242]
Niacin (Vitamin B3, Nicotinic acid, Nicotinate, Nicotinamide, Vitamin B3)	Consumption (import)	Clostridium tetani	[242]
Niacin (Vitamin B3, Nicotinic acid, Nicotinate, Nicotinamide, Vitamin B3)	Consumption (import)	Colonocyte (host colon)	[336]
Niacin (Vitamin B3, Nicotinic acid, Nicotinate, Nicotinamide, Vitamin B3)	Consumption (import)	Corynebacterium diphtheriae	[242]
Niacin (Vitamin B3, Nicotinic acid, Nicotinate, Nicotinamide, Vitamin B3)	Consumption (import)	Deinococcus radiodurans	[125]
Niacin (Vitamin B3, Nicotinic acid, Nicotinate, Nicotinamide, Vitamin B3)	Consumption (import) & production (export)	Escherichia coli	[39,242]
Niacin (Vitamin B3, Nicotinic acid, Nicotinate, Nicotinamide, Vitamin B3)	Consumption (import)	Klebsiella pneumoniae	[242]
Niacin (Vitamin B3, Nicotinic acid, Nicotinate, Nicotinamide, Vitamin B3)	Consumption (import)	Lactobacillus casei	[242]
Niacin (Vitamin B3, Nicotinic acid, Nicotinate, Nicotinamide, Vitamin B3)	Consumption (import)	Leuconostoc mesenteroides	[242]
Niacin (Vitamin B3, Nicotinic acid, Nicotinate, Nicotinamide, Vitamin B3)	Consumption (import)	Neisseria gonorrhoeae	[242]
Niacin (Vitamin B3, Nicotinic acid, Nicotinate, Nicotinamide, Vitamin B3)	Consumption (import)	Paenibacillus larvae	[242]
Niacin (Vitamin B3, Nicotinic acid, Nicotinate, Nicotinamide, Vitamin B3)	Consumption (import)	Shigella dysenteriae	[242]
Niacin (Vitamin B3, Nicotinic acid, Nicotinate, Nicotinamide, Vitamin B3)	Consumption (import)	Shigella sonnei	[242]
Niacin (Vitamin B3, Nicotinic acid, Nicotinate, Nicotinamide, Vitamin B3)	Consumption (import)	Staphylococcus aureus	[242]
Niacin (Vitamin B3, Nicotinic acid, Nicotinate, Nicotinamide, Vitamin B3)	Consumption (import)	Streptococcus bovis (Streptococcus equinus)	[242]
Niacin (Vitamin B3, Nicotinic acid, Nicotinate, Nicotinamide, Vitamin B3)	Consumption (import)	Streptococcus salivarius	[242]
Nitrate	Consumption (import)	Achromobacter piechaudii	[151]
Nitrate	Consumption (import)	Acidovorax avenae	[360]
Nitrate	Consumption (import)	Acidovorax delafieldii	[360]
Nitrate	Consumption (import)	Agrobacterium tumefaciens (Rhizobium radiobacter)	[413]
Nitrate	Consumption (import)	Alicycliphilus denitrificans	[405]
Nitrate	Consumption (import)	Bacillus amyloliquefaciens	[339]
Nitrate	Consumption (import)	Bacillus anthracis	[339]
Nitrate	Consumption (import)	Bacillus atrophaeus	[339]
Nitrate	Consumption (import)	Bacillus cellulosilyticus	[339]
Nitrate	Consumption (import)	Bacillus cereus	[339]
Nitrate	Consumption (import)	Bacillus clausii	[339]
Nitrate	Consumption (import)	Bacillus coagulans	[339]
Nitrate	Consumption (import)	Bacillus coahuilensis	[339]
Nitrate	Consumption (import)	Bacillus halodurans	[339]
Nitrate	Consumption (import)	Bacillus licheniformis	[339]
Nitrate	Consumption (import)	Bacillus megaterium	[339]
Nitrate	Consumption (import)	Bacillus mycoides	[339]
Nitrate	Consumption (import)	Bacillus pseudofirmus	[339]
Nitrate	Consumption (import)	Bacillus pseudomycoides	[339]
Nitrate	Consumption (import)	Bacillus pumilus	[339]
Nitrate	Consumption (import)	Bacillus selenitireducens	[339]
Nitrate	Consumption (import)	Bacillus subtilis	[329,339]
Nitrate	Consumption (import)	Bacillus thuringiensis	[339]
Nitrate	Consumption (import)	Bacillus weihenstephanensis	[339]
Nitrate	Consumption (import)	Bilophila wadsworthia	[169]
Nitrate	Consumption (import)	Bradyrhizobium japonicum	[412]
Nitrate	Consumption (import)	Calditerrivibrio nitroreducens	[404]
Nitrate	Consumption (import)	Caminibacter mediatlanticus	[349]
Nitrate	Consumption (import)	Chromobacterium violaceum	[403]
Nitrate	Consumption (import)	Corynebacterium glutamicum	[329]
Nitrate	Consumption (import)	Denitrovibrio acetiphilus	[408]
Nitrate	Consumption (import)	Escherichia coli	[142,329]
Nitrate	Consumption (import)	Geobacillus thermodenitrificans	[411]
Nitrate	Consumption (import)	Geobacter metallireducens	[59,186]
Nitrate	Consumption (import)	Geobacter sulfurreducens	[59]
Nitrate	Consumption (import)	Hyphomicrobium denitrificans	[423,Supplementary Data 2d]
Nitrate	Consumption (import)	Jonesia denitrificans	[Supplementary Data 2d]
Nitrate	Consumption (import)	Kingella denitrificans	[409]
Nitrate	Consumption (import)	Klebsiella pneumoniae	[133]
Nitrate	Consumption (import)	Methylotenera mobilis	[51,51]
Nitrate	Consumption (import)	Moorella thermoacetica	[81]
Nitrate	Consumption (import)	Moraxella catarrhalis	[414,Supplementary Data 2d]
Nitrate	Consumption (import)	Mycobacterium tuberculosis	[329]
Nitrate	Consumption (import)	Neisseria flavescens	[416]
Nitrate	Consumption (import)	Neisseria mucosa	[416]
Nitrate	Production (export)	Nitrobacter hamburgensis	[Supplementary Data 2d]
Nitrate	Production (export)	Nitrobacter winogradskyi	[Supplementary Data 2d]
Nitrate	Production (export)	Nitrococcus mobilis	[Supplementary Data 2d]
Nitrate	Consumption (import)	Paracoccus denitrificans	[403,Supplementary Data 2d]
Nitrate	Consumption (import)	Pseudomonas aeruginosa	[402,Supplementary Data 2d,339]
Nitrate	Consumption (import)	Pseudomonas entomophila	[339]
Nitrate	Consumption (import)	Pseudomonas fluorescens	[417,339]
Nitrate	Consumption (import)	Pseudomonas mendocina	[133,Supplementary Data 2d,339]
Nitrate	Consumption (import)	Pseudomonas putida	[415,Supplementary Data 2d,339]
Nitrate	Consumption (import)	Pseudomonas savastanoi	[339]
Nitrate	Consumption (import)	Pseudomonas stutzeri	[410,Supplementary Data 2d,339]
Nitrate	Consumption (import)	Pseudomonas syringae	[418,339]
Nitrate	Consumption (import)	Pyrobaculum aerophilum	[419]
Nitrate	Consumption (import)	Pyrobaculum calidifontis	[420]
Nitrate	Consumption (import)	Ralstonia pickettii	[133]
Nitrate	Consumption (import)	Roseobacter denitrificans	[421]
Nitrate	Consumption (import)	Shewanella denitrificans	[422]
Nitrate	Consumption (import)	Sulfurimonas denitrificans	[406]
Nitrate	Consumption (import)	Thiobacillus denitrificans	[407]
Nitrate	Consumption (import)	Wolinella succinogenes	[59,318]
Nitric Oxide (NO)	Consumption (import)	Colonocyte (host colon)	[336]
Nitric Oxide (NO)	Production (export)	Nitrosococcus halophilus	[Supplementary Data 2d]
Nitric Oxide (NO)	Production (export)	Nitrosococcus oceani	[Supplementary Data 2d]
Nitric Oxide (NO)	Production (export)	Nitrosococcus watsoni	[Supplementary Data 2d]
Nitric Oxide (NO)	Production (export)	Nitrosomonas europaea	[Supplementary Data 2d]
Nitric Oxide (NO)	Production (export)	Nitrosomonas eutropha	[Supplementary Data 2d]
Nitric Oxide (NO)	Production (export)	Nitrosopumilus maritimus	[Supplementary Data 2d]
Nitric Oxide (NO)	Production (export)	Nitrosospira multiformis	[Supplementary Data 2d]
Nitrite	Consumption (import)	Nitrobacter hamburgensis	[Supplementary Data 2d]
Nitrite	Consumption (import)	Nitrobacter winogradskyi	[Supplementary Data 2d]
Nitrite	Consumption (import)	Nitrococcus mobilis	[Supplementary Data 2d]
Octanoate (Caprylic acid)	Consumption (import)	Colonocyte (host colon)	[336]
Oleic acid ([9Z]-Octadecenoic acid)	Consumption (import)	Clostridium tetani	[242]
Oleic acid ([9Z]-Octadecenoic acid)	Consumption (import)	Colonocyte (host colon)	[336]
Oleic acid ([9Z]-Octadecenoic acid)	Consumption (import)	Corynebacterium diphtheriae	[242]
Oleic acid ([9Z]-Octadecenoic acid)	Consumption (import)	Erysipelothrix rhusiopathiae	[242]
Orotic acid (Orotate)	Consumption (import)	Colonocyte (host colon)	[336]
Orotic acid (Orotate)	Consumption (import)	Lactobacillus casei	[242]
Oxalate	Consumption (import)	Moorella thermoacetica	[81,275]
Oxalate	Consumption (import)	Oxalobacter formigenes	[27,29,164]
Oxaloacetate	Consumption (import)	Veillonella parvula	[229]
p-Cresol (4-methylphenol, 4-cresol)	Production (export)	Clostridium difficile	[127]
p-Cresol (4-methylphenol, 4-cresol)	Consumption (import)	Colonocyte (host colon)	[132]
p-Cresol (4-methylphenol, 4-cresol)	Consumption (import)	Geobacter metallireducens	[117,186]
Palmitate (Palmitic acid, Hexadecanoic acid, Hexadecanoate)	Consumption (import)	Colonocyte (host colon)	[336]
Palmitate (Palmitic acid, Hexadecanoic acid, Hexadecanoate)	Consumption (import)	Syntrophomonas wolfei	[314,321]
Pantothenic acid (Vitamin B5, Pantothenate)	Production (export)	Baumannia cicadellinicola	[368]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Brucella abortus	[242]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Brucella melitensis	[242]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Brucella suis	[242]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Clostridium acetobutylicum	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Clostridium asparagiforme	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Clostridium bartlettii	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Clostridium beijerinckii	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Clostridium bolteae	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Clostridium botulinum	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Clostridium butyricum	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Clostridium carboxidivorans	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Clostridium cellulolyticum	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Clostridium cellulovorans	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Clostridium cf	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Clostridium difficile	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Clostridium hathewayi	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Clostridium hiranonis	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Clostridium hylemonae	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Clostridium kluyveri	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Clostridium leptum	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Clostridium ljungdahlii	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Clostridium methylpentosum	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Clostridium nexile	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Clostridium novyi	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Clostridium papyrosolvens	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Clostridium perfringens	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Clostridium phytofermentans	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Clostridium saccharolyticum	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Clostridium scindens	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Clostridium sporogenes	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Clostridium sticklandii	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Clostridium symbiosum	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Clostridium tetani	[242,260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Clostridium thermocellum	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Colonocyte (host colon)	[336]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Corynebacterium diphtheriae	[242]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Lactobacillus acidophilus	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Lactobacillus amylolyticus	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Lactobacillus amylovorus	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Lactobacillus antri	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Lactobacillus brevis	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Lactobacillus buchneri	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Lactobacillus casei	[242,260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Lactobacillus coleohominis	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Lactobacillus crispatus	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Lactobacillus delbrueckii	[242,260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Lactobacillus fermentum	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Lactobacillus gasseri	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Lactobacillus helveticus	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Lactobacillus hilgardii	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Lactobacillus iners	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Lactobacillus jensenii	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Lactobacillus johnsonii	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Lactobacillus oris	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Lactobacillus paracasei	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Lactobacillus plantarum	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Lactobacillus reuteri	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Lactobacillus rhamnosus	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Lactobacillus ruminis	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Lactobacillus sakei	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Lactobacillus salivarius	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Lactobacillus ultunensis	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Lactobacillus vaginalis	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Lactococcus lactis	[242]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Leuconostoc mesenteroides	[242]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Mycoplasma agalactiae	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Mycoplasma alligatoris	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Mycoplasma arthritidis	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Mycoplasma bovis	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Mycoplasma capricolum	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Mycoplasma conjunctivae	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Mycoplasma crocodyli	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Mycoplasma fermentans	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Mycoplasma gallisepticum	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Mycoplasma genitalium	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Mycoplasma haemofelis	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Mycoplasma hominis	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Mycoplasma hyopneumoniae	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Mycoplasma hyorhinis	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Mycoplasma leachii	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Mycoplasma mobile	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Mycoplasma mycoides	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Mycoplasma penetrans	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Mycoplasma pneumoniae	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Mycoplasma pulmonis	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Mycoplasma synoviae	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Neisseria gonorrhoeae	[242]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Paenibacillus larvae	[242]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Ruminococcus bromii	[121]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Streptococcus agalactiae	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Streptococcus anginosus	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Streptococcus australis	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Streptococcus bovis (Streptococcus equinus)	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Streptococcus cristatus	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Streptococcus downei	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Streptococcus dysgalactiae	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Streptococcus equi	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Streptococcus gallolyticus	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Streptococcus gordonii	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Streptococcus infantarius	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Streptococcus infantis	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Streptococcus mitis	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Streptococcus mutans	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Streptococcus oralis	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Streptococcus parasanguinis	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Streptococcus peroris	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Streptococcus pneumoniae	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Streptococcus pseudoporcinus	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Streptococcus pyogenes	[242,260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Streptococcus salivarius	[242,260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Streptococcus sanguinis	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Streptococcus suis	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Streptococcus thermophilus	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Streptococcus uberis	[260]
Pantothenic acid (Vitamin B5, Pantothenate)	Consumption (import)	Streptococcus vestibularis	[260]
Pectin	Macromolecule degradation	Acetobacter pasteurianus	[134]
Pectin	Macromolecule degradation	Actinomyces coleocanis	[34]
Pectin	Macromolecule degradation	Actinomyces odontolyticus	[34]
Pectin	Macromolecule degradation	Actinomyces oris	[34]
Pectin	Macromolecule degradation	Actinomyces urogenitalis	[34]
Pectin	Macromolecule degradation	Actinomyces viscosus	[34]
Pectin	Macromolecule degradation	Actinosynnema mirum	[34]
Pectin	Macromolecule degradation	Bacteroides caccae	[210]
Pectin	Macromolecule degradation	Bacteroides fragilis	[279]
Pectin	Macromolecule degradation	Bacteroides ovatus	[204,210,279]
Pectin	Macromolecule degradation	Bacteroides thetaiotaomicron	[118,204,210,256,279,312]
Pectin	Macromolecule degradation	Bacteroides vulgatus	[210,279]
Pectin	Macromolecule degradation	Bifidobacterium bifidum	[62]
Pectin	Macromolecule degradation	Bifidobacterium breve	[62]
Pectin	Macromolecule degradation	Bifidobacterium catenulatum	[62]
Pectin	Macromolecule degradation	Butyrivibrio fibrisolvens	[71,217]
Pectin	Macromolecule degradation	Butyrivibrio proteoclasticus	[152,217]
Pectin	Macromolecule degradation	Clostridium cellulolyticum	[278]
Pectin	Macromolecule degradation	Collinsella aerofaciens (Eubacterium aerofaciens)	[210]
Pectin	Macromolecule degradation	Eubacterium eligens	[95,280]
Pectin	Macromolecule degradation	Faecalibacterium prausnitzii	[95]
Pectin	Macromolecule degradation	Fibrobacter succinogenes (Bacteroides succinogenes)	[198,326]
Pectin	Macromolecule degradation	Prevotella ruminicola (Bacteroides ruminicola)	[71,95]
Pectin	Macromolecule degradation	Ruminococcus flavefaciens	[71]
Pectin	Macromolecule degradation	Streptomyces viridochromogenes	[34]
Pelargonic acid (Pelargonate, Nonanoic acid)	Consumption (import)	Syntrophomonas wolfei	[314]
Pentanol	Production (export)	Escherichia coli	[33]
Pentanol	Consumption (import)	Pelotomaculum thermopropionicum	[135]
Phenol	Consumption (import)	Colonocyte (host colon)	[132]
Phenol	Consumption (import)	Desulfovibrio aespoeensis	[106]
Phenol	Consumption (import)	Desulfovibrio desulfuricans	[106]
Phenol	Consumption (import)	Desulfovibrio fructosovorans	[106]
Phenol	Consumption (import)	Desulfovibrio magneticus	[106]
Phenol	Consumption (import)	Desulfovibrio piger	[106]
Phenol	Consumption (import)	Desulfovibrio salexigens	[106]
Phenol	Consumption (import)	Desulfovibrio vulgaris	[106]
Phenol	Consumption (import)	Geobacter metallireducens	[117,186,290]
Phenylacetate	Production (export)	Bacteroides thetaiotaomicron	[118]
Phenylacetate	Production (export)	Clostridium botulinum	[86]
Phenylacetate	Production (export)	Clostridium sticklandii	[86]
Phenylacetate	Consumption (import)	Colonocyte (host colon)	[132]
Phenylacetate	Consumption (import)	Geobacter metallireducens	[117]
Phenylacetate	Consumption (import)	Methylobacterium nodulans	[427]
Phenylacetate	Production (export)	Pyramidobacter piscolens	[79]
Phenylethylamine	Production (export)	Bacteroides ovatus	[308]
Phenylethylamine	Production (export)	Bacteroides thetaiotaomicron	[308]
Phenylethylamine	Production (export)	Bifidobacterium longum (Bifidobacterium infantis, Bifidobacterium suis)	[308]
Phylloquinone (Vitamin K1)	Consumption (import)	Colonocyte (host colon)	[336]
Pimelate	Consumption (import)	Acidovorax avenae	[360]
Pimelate	Consumption (import)	Acidovorax delafieldii	[360]
Pimelate	Consumption (import)	Corynebacterium diphtheriae	[242]
Pimelate	Consumption (import)	Rhodospirillum rubrum	[242]
Polypeptide	Macromolecule degradation	Bacteroides fragilis	[29,192,195]
Polypeptide	Macromolecule degradation	Bacteroides thetaiotaomicron	[195]
Polypeptide	Macromolecule degradation	Bacteroides vulgatus	[29,195]
Polypeptide	Macromolecule degradation	Butyrivibrio fibrisolvens	[61,88,217,351,352,353]
Polypeptide	Macromolecule degradation	Butyrivibrio proteoclasticus	[217]
Polypeptide	Macromolecule degradation	Clostridium botulinum	[86,211]
Polypeptide	Macromolecule degradation	Clostridium perfringens	[191]
Polypeptide	Macromolecule degradation	Clostridium sporogenes	[191]
Polypeptide	Macromolecule degradation	Enterococcus faecalis (Streptococcus faecalis)	[191,195]
Polypeptide	Macromolecule degradation	Lactobacillus delbrueckii	[26]
Polypeptide	Macromolecule degradation	Prevotella ruminicola (Bacteroides ruminicola)	[61,147,211,351,352,353,369]
Polypeptide	Macromolecule degradation	Propionibacterium acnes	[136,191]
Polypeptide	Macromolecule degradation	Streptococcus bovis (Streptococcus equinus)	[47,88,270,351,352,353]
Polypeptide	Macromolecule degradation	Veillonella parvula	[187]
Propanal	Production (export)	Clostridium butyricum	[5]
Propanoate (Propionate)	Production (export)	Acidaminococcus fermentans	[143]
Propanoate (Propionate)	Production (export)	Alistipes putredinis	[252]
Propanoate (Propionate)	Production (export)	Anaerostipes caccae	[285]
Propanoate (Propionate)	Production (export)	Bacteroides caccae	[149,185,198,255,366]
Propanoate (Propionate)	Production (export)	Bacteroides cellulosilyticus	[149,185,198,255,366]
Propanoate (Propionate)	Production (export)	Bacteroides coprocola	[149,185,198,255,366]
Propanoate (Propionate)	Production (export)	Bacteroides coprophilus	[149,185,198,255,366]
Propanoate (Propionate)	Production (export)	Bacteroides dorei	[149,185,198,255,366]
Propanoate (Propionate)	Production (export)	Bacteroides eggerthii	[198,149,185,198,255,366]
Propanoate (Propionate)	Production (export)	Bacteroides finegoldii (Alistipes finegoldii)	[252,149,185,198,255,366]
Propanoate (Propionate)	Production (export)	Bacteroides fragilis	[195,198,288,149,185,198,255,366]
Propanoate (Propionate)	Production (export)	Bacteroides helcogenes	[149,185,198,255,366]
Propanoate (Propionate)	Production (export)	Bacteroides intestinalis	[149,185,198,255,366]
Propanoate (Propionate)	Production (export)	Bacteroides ovatus	[190,149,185,198,255,366]
Propanoate (Propionate)	Production (export)	Bacteroides pectinophilus	[149,185,198,255,366]
Propanoate (Propionate)	Production (export)	Bacteroides plebeius	[149,185,198,255,366]
Propanoate (Propionate)	Production (export)	Bacteroides salanitronis	[149,185,198,255,366]
Propanoate (Propionate)	Production (export)	Bacteroides stercoris	[149,185,198,255,366]
Propanoate (Propionate)	Production (export)	Bacteroides thetaiotaomicron	[92,118,195,199,256,281,149,185,198,255,366]
Propanoate (Propionate)	Production (export)	Bacteroides uniformis	[149,185,198,255,366]
Propanoate (Propionate)	Production (export)	Bacteroides vulgatus	[195,149,185,198,255,366]
Propanoate (Propionate)	Production (export)	Bacteroides xylanisolvens	[44,149,185,198,255,366]
Propanoate (Propionate)	Production (export)	Bifidobacterium longum (Bifidobacterium infantis, Bifidobacterium suis)	[295]
Propanoate (Propionate)	Consumption (import)	Butyrivibrio crossotus	[217]
Propanoate (Propionate)	Consumption (import)	Butyrivibrio fibrisolvens	[217]
Propanoate (Propionate)	Consumption (import)	Butyrivibrio proteoclasticus	[217]
Propanoate (Propionate)	Production (export)	Clostridium kluyveri	[294]
Propanoate (Propionate)	Production (export)	Clostridium perfringens	[306]
Propanoate (Propionate)	Production (export)	Clostridium sticklandii	[9,211]
Propanoate (Propionate)	Consumption (import)	Colonocyte (host colon)	[100,336]
Propanoate (Propionate)	Consumption (import)	Comamonas testosteroni	[101]
Propanoate (Propionate)	Production (export)	Coprococcus catus	[124,253]
Propanoate (Propionate)	Production (export)	Coprococcus comes	[124]
Propanoate (Propionate)	Consumption (import) & production (export)	Desulfobulbus propionicus	[288,291,318,318,223]
Propanoate (Propionate)	Consumption (import)	Desulfovibrio aespoeensis	[106]
Propanoate (Propionate)	Consumption (import)	Desulfovibrio desulfuricans	[106]
Propanoate (Propionate)	Consumption (import)	Desulfovibrio fructosovorans	[106]
Propanoate (Propionate)	Consumption (import)	Desulfovibrio magneticus	[106]
Propanoate (Propionate)	Consumption (import)	Desulfovibrio piger	[106]
Propanoate (Propionate)	Consumption (import)	Desulfovibrio salexigens	[106]
Propanoate (Propionate)	Consumption (import)	Desulfovibrio vulgaris	[106]
Propanoate (Propionate)	Production (export)	Dialister invisus	[80]
Propanoate (Propionate)	Production (export)	Enterococcus faecalis (Streptococcus faecalis)	[195]
Propanoate (Propionate)	Production (export)	Eubacterium rectale	[184]
Propanoate (Propionate)	Production (export)	Faecalibacterium prausnitzii	[184]
Propanoate (Propionate)	Production (export)	Fibrobacter succinogenes (Bacteroides succinogenes)	[198]
Propanoate (Propionate)	Consumption (import)	Geobacter metallireducens	[186]
Propanoate (Propionate)	Production (export)	Megamonas hypermegale	[277]
Propanoate (Propionate)	Production (export)	Megasphaera micronuciformis	[85]
Propanoate (Propionate)	Production (export)	Odoribacter splanchnicus	[107]
Propanoate (Propionate)	Production (export)	Pelobacter propionicus	[288,289,318]
Propanoate (Propionate)	Consumption (import)	Pelotomaculum thermopropionicum	[135,162,219,302]
Propanoate (Propionate)	Production (export)	Porphyromonas asaccharolytica	[306]
Propanoate (Propionate)	Production (export)	Prevotella amnii	[185]
Propanoate (Propionate)	Production (export)	Prevotella bergensis	[185]
Propanoate (Propionate)	Production (export)	Prevotella bivia	[185]
Propanoate (Propionate)	Production (export)	Prevotella bryantii	[185]
Propanoate (Propionate)	Production (export)	Prevotella buccae	[185]
Propanoate (Propionate)	Production (export)	Prevotella buccalis	[185]
Propanoate (Propionate)	Production (export)	Prevotella copri	[185]
Propanoate (Propionate)	Production (export)	Prevotella disiens	[185]
Propanoate (Propionate)	Production (export)	Prevotella marshii	[185]
Propanoate (Propionate)	Production (export)	Prevotella melaninogenica (Bacteroides melaninogenicus)	[185]
Propanoate (Propionate)	Production (export)	Prevotella multiformis	[185]
Propanoate (Propionate)	Production (export)	Prevotella oralis	[185]
Propanoate (Propionate)	Production (export)	Prevotella oris	[185]
Propanoate (Propionate)	Consumption (import) & production (export)	Prevotella ruminicola (Bacteroides ruminicola)	[244,288,323,185]
Propanoate (Propionate)	Production (export)	Prevotella salivae	[185]
Propanoate (Propionate)	Production (export)	Prevotella tannerae	[185]
Propanoate (Propionate)	Production (export)	Prevotella timonensis	[185]
Propanoate (Propionate)	Production (export)	Prevotella veroralis	[185]
Propanoate (Propionate)	Production (export)	Propionibacterium acnes	[Supplementary Data 2d,145,197,316]
Propanoate (Propionate)	Production (export)	Propionibacterium freudenreichii (Propionibacterium shermanii)	[163,145,197,316]
Propanoate (Propionate)	Production (export)	Pyramidobacter piscolens	[79]
Propanoate (Propionate)	Production (export)	Roseburia intestinalis	[184]
Propanoate (Propionate)	Production (export)	Roseburia inulinivorans	[95,184,253,184]
Propanoate (Propionate)	Production (export)	Ruminococcus obeum	[253]
Propanoate (Propionate)	Production (export)	Salmonella enterica	[253]
Propanoate (Propionate)	Production (export)	Selenomonas artemidis	[85,197]
Propanoate (Propionate)	Production (export)	Selenomonas flueggei	[85,197]
Propanoate (Propionate)	Production (export)	Selenomonas noxia	[85,197]
Propanoate (Propionate)	Production (export)	Selenomonas sputigena	[85,197]
Propanoate (Propionate)	Consumption (import)	Syntrophobacter fumaroxidans	[31,135,162,219,302,302,319]
Propanoate (Propionate)	Consumption (import)	Syntrophobotulus glycolicus	[302]
Propanoate (Propionate)	Consumption (import) & production (export)	Syntrophomonas wolfei	[31,162,302,321,367]
Propanoate (Propionate)	Consumption (import)	Syntrophothermus lipocalidus	[302]
Propanoate (Propionate)	Consumption (import)	Syntrophus aciditrophicus	[162,302]
Propanoate (Propionate)	Production (export)	Veillonella atypica	[19,85]
Propanoate (Propionate)	Production (export)	Veillonella dispar	[19,85]
Propanoate (Propionate)	Production (export)	Veillonella parvula	[187,229,19,85]
Propanol (n-propanol, 1-Propanol)	Consumption (import)	Bilophila wadsworthia	[169]
Propanol (n-propanol, 1-Propanol)	Consumption (import)	Clostridium kluyveri	[294]
Propanol (n-propanol, 1-Propanol)	Consumption (import)	Geobacter metallireducens	[186]
Propanol (n-propanol, 1-Propanol)	Consumption (import)	Moorella thermoacetica	[81]
Propanol (n-propanol, 1-Propanol)	Consumption (import)	Pelobacter carbinolicus	[5]
Propanol (n-propanol, 1-Propanol)	Consumption (import)	Pelobacter propionicus	[289]
Propanol (n-propanol, 1-Propanol)	Consumption (import)	Pelotomaculum thermopropionicum	[135,162]
Propanol (n-propanol, 1-Propanol)	Production (export)	Roseburia inulinivorans	[95,184]
Propanol (n-propanol, 1-Propanol)	Production (export)	Salmonella enterica	[253]
Putrescine	Production (export)	Bacteroides fragilis	[308]
Putrescine	Production (export)	Bacteroides ovatus	[308]
Putrescine	Production (export)	Bacteroides thetaiotaomicron	[118]
Putrescine	Production (export)	Campylobacter jejuni	[230]
Putrescine	Production (export)	Clostridium saccharolyticum	[230]
Putrescine	Consumption (import)	Colonocyte (host colon)	[336]
Putrescine	Production (export)	Enterobacter cloacae	[243]
Putrescine	Production (export)	Escherichia coli	[243,308]
Putrescine	Production (export)	Lactobacillus acidophilus	[308]
Putrescine	Consumption (import)	Pseudomonas aeruginosa	[53]
Putrescine	Production (export)	Sulfolobus solfataricus	[284]
Putrescine	Production (export)	Thermococcus kodakaraensis	[284]
Putrescine	Production (export)	Thermus thermophilus	[284]
Pyridoxal (Vitamin B6, Pyridoxine, Pyridoxamine, Vitamin B6)	Production (export)	Bacillus subtilis	[300]
Pyridoxal (Vitamin B6, Pyridoxine, Pyridoxamine, Vitamin B6)	Production (export)	Baumannia cicadellinicola	[207,368]
Pyridoxal (Vitamin B6, Pyridoxine, Pyridoxamine, Vitamin B6)	Production (export)	Bifidobacterium adolescentis	[267]
Pyridoxal (Vitamin B6, Pyridoxine, Pyridoxamine, Vitamin B6)	Production (export)	Bifidobacterium bifidum	[267]
Pyridoxal (Vitamin B6, Pyridoxine, Pyridoxamine, Vitamin B6)	Production (export)	Bifidobacterium breve	[267]
Pyridoxal (Vitamin B6, Pyridoxine, Pyridoxamine, Vitamin B6)	Production (export)	Bifidobacterium longum (Bifidobacterium infantis, Bifidobacterium suis)	[174,267]
Pyridoxal (Vitamin B6, Pyridoxine, Pyridoxamine, Vitamin B6)	Consumption (import)	Clostridium tetani	[242]
Pyridoxal (Vitamin B6, Pyridoxine, Pyridoxamine, Vitamin B6)	Consumption (import)	Colonocyte (host colon)	[336]
Pyridoxal (Vitamin B6, Pyridoxine, Pyridoxamine, Vitamin B6)	Production (export)	Ensifer meliloti (Sinorhizobium meliloti)	[300]
Pyridoxal (Vitamin B6, Pyridoxine, Pyridoxamine, Vitamin B6)	Consumption (import)	Enterococcus faecalis (Streptococcus faecalis)	[220,220]
Pyridoxal (Vitamin B6, Pyridoxine, Pyridoxamine, Vitamin B6)	Consumption (import)	Escherichia coli	[220]
Pyridoxal (Vitamin B6, Pyridoxine, Pyridoxamine, Vitamin B6)	Consumption (import)	Lactobacillus casei	[220,242]
Pyridoxal (Vitamin B6, Pyridoxine, Pyridoxamine, Vitamin B6)	Consumption (import)	Lactobacillus delbrueckii	[242]
Pyridoxal (Vitamin B6, Pyridoxine, Pyridoxamine, Vitamin B6)	Production (export)	Lactobacillus helveticus	[173,174]
Pyridoxal (Vitamin B6, Pyridoxine, Pyridoxamine, Vitamin B6)	Consumption (import)	Lactococcus lactis	[242]
Pyridoxal (Vitamin B6, Pyridoxine, Pyridoxamine, Vitamin B6)	Consumption (import)	Leuconostoc mesenteroides	[242]
Pyridoxal (Vitamin B6, Pyridoxine, Pyridoxamine, Vitamin B6)	Consumption (import)	Neisseria gonorrhoeae	[242]
Pyridoxal (Vitamin B6, Pyridoxine, Pyridoxamine, Vitamin B6)	Consumption (import)	Paenibacillus larvae	[242]
Pyridoxal (Vitamin B6, Pyridoxine, Pyridoxamine, Vitamin B6)	Consumption (import)	Ruminococcus albus	[121]
Pyridoxal (Vitamin B6, Pyridoxine, Pyridoxamine, Vitamin B6)	Consumption (import)	Ruminococcus bromii	[121]
Pyridoxal (Vitamin B6, Pyridoxine, Pyridoxamine, Vitamin B6)	Consumption (import)	Shigella sonnei	[242]
Pyridoxal (Vitamin B6, Pyridoxine, Pyridoxamine, Vitamin B6)	Production (export)	Sphaerobacter thermophilus	[173]
Pyridoxal (Vitamin B6, Pyridoxine, Pyridoxamine, Vitamin B6)	Production (export)	Streptococcus thermophilus	[174]
Pyruvate	Consumption (import)	Acetohalobium arabaticum	[233]
Pyruvate	Consumption (import)	Aeromicrobium marinum	[36]
Pyruvate	Consumption (import)	Anaerotruncus colihominis	[170]
Pyruvate	Production (export)	Bacteroides thetaiotaomicron	[118]
Pyruvate	Consumption (import)	Bilophila wadsworthia	[169,304]
Pyruvate	Consumption (import)	Blautia hydrogenotrophica (Ruminococcus hydrogenotrophicus)	[24]
Pyruvate	Consumption (import)	Clostridium acetobutylicum	[278]
Pyruvate	Production (export)	Clostridium cellulolyticum	[278]
Pyruvate	Consumption (import)	Colonocyte (host colon)	[336]
Pyruvate	Consumption (import)	Desulfovibrio aespoeensis	[106,321]
Pyruvate	Consumption (import)	Desulfovibrio desulfuricans	[106,321]
Pyruvate	Consumption (import)	Desulfovibrio fructosovorans	[106,321]
Pyruvate	Consumption (import)	Desulfovibrio magneticus	[106,321]
Pyruvate	Consumption (import)	Desulfovibrio piger	[106,321]
Pyruvate	Consumption (import)	Desulfovibrio salexigens	[106,321]
Pyruvate	Consumption (import)	Desulfovibrio vulgaris	[157,106,321]
Pyruvate	Consumption (import)	Dorea formicigenerans	[333]
Pyruvate	Consumption (import)	Geobacter metallireducens	[186]
Pyruvate	Consumption (import)	Methanosarcina acetivorans	[318]
Pyruvate	Consumption (import)	Methanosarcina barkeri	[318]
Pyruvate	Consumption (import)	Methanosarcina mazei	[318]
Pyruvate	Consumption (import)	Moorella thermoacetica	[81]
Pyruvate	Consumption (import)	Pelobacter propionicus	[289]
Pyruvate	Consumption (import)	Pelotomaculum thermopropionicum	[135,162,219,302]
Pyruvate	Consumption (import)	Pyrococcus abyssi	[160]
Pyruvate	Consumption (import)	Pyrococcus furiosus	[160]
Pyruvate	Consumption (import)	Shewanella putrefaciens (Pseudomonas putrefaciens)	[186]
Pyruvate	Consumption (import)	Syntrophobacter fumaroxidans	[219,302]
Pyruvate	Consumption (import)	Veillonella parvula	[229]
Pyruvate	Consumption (import)	Xanthomonas campestris	[331]
Raffinose	Consumption (import)	Aeromonas hydrophila	[2]
Raffinose	Consumption (import)	Alistipes shahii	[310]
Raffinose	Consumption (import)	Anaerococcus hydrogenalis	[90]
Raffinose	Consumption (import)	Anaerococcus prevotii	[90]
Raffinose	Consumption (import)	Bacteroides fragilis	[104]
Raffinose	Consumption (import)	Bacteroides thetaiotaomicron	[104]
Raffinose	Consumption (import)	Bacteroides xylanisolvens	[44]
Raffinose	Consumption (import)	Bifidobacterium adolescentis	[104]
Raffinose	Consumption (import)	Bifidobacterium angulatum	[104]
Raffinose	Consumption (import)	Bifidobacterium animalis	[104]
Raffinose	Consumption (import)	Bifidobacterium bifidum	[104,104]
Raffinose	Consumption (import)	Bifidobacterium breve	[104]
Raffinose	Consumption (import)	Bifidobacterium catenulatum	[104]
Raffinose	Consumption (import)	Bifidobacterium dentium	[104]
Raffinose	Consumption (import)	Bifidobacterium gallicum	[104]
Raffinose	Consumption (import)	Bifidobacterium longum (Bifidobacterium infantis, Bifidobacterium suis)	[104,104,104]
Raffinose	Consumption (import)	Bifidobacterium pseudocatenulatum	[104]
Raffinose	Consumption (import)	Blautia hansenii	[181]
Raffinose	Consumption (import)	Blautia hydrogenotrophica (Ruminococcus hydrogenotrophicus)	[24]
Raffinose	Consumption (import)	Butyrivibrio fibrisolvens	[217]
Raffinose	Consumption (import)	Butyrivibrio proteoclasticus	[217]
Raffinose	Consumption (import)	Clostridium difficile	[335]
Raffinose	Consumption (import)	Collinsella aerofaciens (Eubacterium aerofaciens)	[145]
Raffinose	Consumption (import)	Coprococcus comes	[124]
Raffinose	Consumption (import)	Coprococcus eutactus	[124]
Raffinose	Consumption (import)	Eubacterium rectale	[301]
Raffinose	Consumption (import)	Holdemania filiformis	[358]
Raffinose	Consumption (import)	Klebsiella pneumoniae	[178]
Raffinose	Consumption (import)	Lactobacillus acidophilus	[104]
Raffinose	Consumption (import)	Leptotrichia buccalis	[87]
Raffinose	Consumption (import)	Marvinbryantia formatexigens	[256]
Raffinose	Consumption (import)	Megamonas hypermegale	[277]
Raffinose	Consumption (import)	Parabacteroides distasonis	[276]
Raffinose	Consumption (import)	Parabacteroides merdae	[276]
Raffinose	Consumption (import)	Prevotella copri	[116]
Raffinose	Consumption (import)	Roseburia intestinalis	[83]
Raffinose	Consumption (import)	Ruminococcus obeum	[181]
Raffinose	Consumption (import)	Subdoligranulum variabile	[128]
Retinoate	Consumption (import)	Colonocyte (host colon)	[336]
Retinol (Vitamin A)	Consumption (import)	Colonocyte (host colon)	[336]
Ribitol	Consumption (import)	Colonocyte (host colon)	[336]
Riboflavin (Vitamin B2)	Consumption (import) & production (export)	Bacillus subtilis	[25,122,174,260,300]
Riboflavin (Vitamin B2)	Production (export)	Baumannia cicadellinicola	[207,368]
Riboflavin (Vitamin B2)	Consumption (import)	Bifidobacterium bifidum	[242]
Riboflavin (Vitamin B2)	Consumption (import)	Buchnera aphidicola	[241]
Riboflavin (Vitamin B2)	Consumption (import)	Clostridium tetani	[242]
Riboflavin (Vitamin B2)	Consumption (import)	Colonocyte (host colon)	[336]
Riboflavin (Vitamin B2)	Consumption (import)	Erysipelothrix rhusiopathiae	[242]
Riboflavin (Vitamin B2)	Production (export)	Escherichia coli	[39,174,362]
Riboflavin (Vitamin B2)	Consumption (import)	Faecalibacterium prausnitzii	[344]
Riboflavin (Vitamin B2)	Production (export)	Klebsiella pneumoniae	[362]
Riboflavin (Vitamin B2)	Consumption (import)	Lactobacillus acidophilus	[242]
Riboflavin (Vitamin B2)	Consumption (import)	Lactobacillus casei	[242]
Riboflavin (Vitamin B2)	Consumption (import)	Lactobacillus delbrueckii	[242]
Riboflavin (Vitamin B2)	Production (export)	Lactobacillus fermentum	[173]
Riboflavin (Vitamin B2)	Consumption (import)	Lactobacillus helveticus	[242]
Riboflavin (Vitamin B2)	Consumption (import) & production (export)	Lactobacillus plantarum	[173,242]
Riboflavin (Vitamin B2)	Consumption (import) & production (export)	Lactococcus lactis	[173,242,260]
Riboflavin (Vitamin B2)	Consumption (import) & production (export)	Leuconostoc mesenteroides	[173,242]
Riboflavin (Vitamin B2)	Consumption (import)	Listeria monocytogenes	[242]
Riboflavin (Vitamin B2)	Production (export)	Methanocaldococcus jannaschii	[93]
Riboflavin (Vitamin B2)	Consumption (import)	Paenibacillus larvae	[242]
Riboflavin (Vitamin B2)	Production (export)	Propionibacterium freudenreichii (Propionibacterium shermanii)	[173]
Riboflavin (Vitamin B2)	Consumption (import)	Ruminococcus bromii	[121]
Riboflavin (Vitamin B2)	Consumption (import)	Streptococcus pyogenes	[242]
Riboflavin (Vitamin B2)	Consumption (import)	Streptococcus salivarius	[242]
Riboflavin (Vitamin B2)	Consumption (import)	Streptococcus thermophilus	[242]
Shikimate	Consumption (import)	Bacillus megaterium	[22]
Spermidine	Production (export)	Bacteroides thetaiotaomicron	[118]
Spermidine	Consumption (import) & production (export)	Campylobacter jejuni	[114,230]
Spermidine	Production (export)	Clostridium saccharolyticum	[230]
Spermidine	Consumption (import)	Colonocyte (host colon)	[336]
Spermidine	Consumption (import)	Prevotella ruminicola (Bacteroides ruminicola)	[244]
Spermidine	Production (export)	Thermococcus kodakaraensis	[284]
Spermidine	Production (export)	Thermus thermophilus	[284]
Spermine	Production (export)	Campylobacter jejuni	[230]
Spermine	Production (export)	Clostridium saccharolyticum	[230]
Spermine	Consumption (import)	Colonocyte (host colon)	[336]
Stachyose	Consumption (import)	Clostridium difficile	[335]
Stachyose	Consumption (import)	Klebsiella pneumoniae	[178]
Stachyose	Consumption (import)	Marvinbryantia formatexigens	[364]
Starch (Amylopectin, Amylose, 1,4-alpha-D-Glucan, Pullulan, Resistant starch)	Macromolecule degradation	Bacteroides eggerthii	[279]
Starch (Amylopectin, Amylose, 1,4-alpha-D-Glucan, Pullulan, Resistant starch)	Macromolecule degradation	Bacteroides fragilis	[96,198,279]
Starch (Amylopectin, Amylose, 1,4-alpha-D-Glucan, Pullulan, Resistant starch)	Macromolecule degradation	Bacteroides ovatus	[44,96,161,198,204,279]
Starch (Amylopectin, Amylose, 1,4-alpha-D-Glucan, Pullulan, Resistant starch)	Macromolecule degradation	Bacteroides thetaiotaomicron	[11,44,95,96,118,161,198,199,204,256,279,311,371]
Starch (Amylopectin, Amylose, 1,4-alpha-D-Glucan, Pullulan, Resistant starch)	Macromolecule degradation	Bacteroides vulgatus	[198,279]
Starch (Amylopectin, Amylose, 1,4-alpha-D-Glucan, Pullulan, Resistant starch)	Macromolecule degradation	Bifidobacterium adolescentis	[18,62,85,94,95,96,280,371]
Starch (Amylopectin, Amylose, 1,4-alpha-D-Glucan, Pullulan, Resistant starch)	Macromolecule degradation	Bifidobacterium angulatum	[62]
Starch (Amylopectin, Amylose, 1,4-alpha-D-Glucan, Pullulan, Resistant starch)	Macromolecule degradation	Bifidobacterium animalis	[62]
Starch (Amylopectin, Amylose, 1,4-alpha-D-Glucan, Pullulan, Resistant starch)	Macromolecule degradation	Bifidobacterium bifidum	[18,62]
Starch (Amylopectin, Amylose, 1,4-alpha-D-Glucan, Pullulan, Resistant starch)	Macromolecule degradation	Bifidobacterium breve	[62,95,247,280]
Starch (Amylopectin, Amylose, 1,4-alpha-D-Glucan, Pullulan, Resistant starch)	Macromolecule degradation	Bifidobacterium catenulatum	[62]
Starch (Amylopectin, Amylose, 1,4-alpha-D-Glucan, Pullulan, Resistant starch)	Macromolecule degradation	Bifidobacterium dentium	[62]
Starch (Amylopectin, Amylose, 1,4-alpha-D-Glucan, Pullulan, Resistant starch)	Macromolecule degradation	Bifidobacterium gallicum	[62]
Starch (Amylopectin, Amylose, 1,4-alpha-D-Glucan, Pullulan, Resistant starch)	Macromolecule degradation	Bifidobacterium longum (Bifidobacterium infantis, Bifidobacterium suis)	[62,280]
Starch (Amylopectin, Amylose, 1,4-alpha-D-Glucan, Pullulan, Resistant starch)	Macromolecule degradation	Bifidobacterium pseudocatenulatum	[18,62]
Starch (Amylopectin, Amylose, 1,4-alpha-D-Glucan, Pullulan, Resistant starch)	Macromolecule degradation	Butyrivibrio crossotus	[217]
Starch (Amylopectin, Amylose, 1,4-alpha-D-Glucan, Pullulan, Resistant starch)	Macromolecule degradation	Butyrivibrio fibrisolvens	[217]
Starch (Amylopectin, Amylose, 1,4-alpha-D-Glucan, Pullulan, Resistant starch)	Macromolecule degradation	Butyrivibrio proteoclasticus	[152,217]
Starch (Amylopectin, Amylose, 1,4-alpha-D-Glucan, Pullulan, Resistant starch)	Macromolecule degradation	Catenibacterium mitsuokai	[146]
Starch (Amylopectin, Amylose, 1,4-alpha-D-Glucan, Pullulan, Resistant starch)	Macromolecule degradation	Clostridium butyricum	[224]
Starch (Amylopectin, Amylose, 1,4-alpha-D-Glucan, Pullulan, Resistant starch)	Macromolecule degradation	Collinsella aerofaciens (Eubacterium aerofaciens)	[280]
Starch (Amylopectin, Amylose, 1,4-alpha-D-Glucan, Pullulan, Resistant starch)	Macromolecule degradation	Coprococcus eutactus	[124]
Starch (Amylopectin, Amylose, 1,4-alpha-D-Glucan, Pullulan, Resistant starch)	Macromolecule degradation	Eubacterium rectale	[94,95,96,238,280,350,371]
Starch (Amylopectin, Amylose, 1,4-alpha-D-Glucan, Pullulan, Resistant starch)	Macromolecule degradation	Eubacterium siraeum	[49]
Starch (Amylopectin, Amylose, 1,4-alpha-D-Glucan, Pullulan, Resistant starch)	Macromolecule degradation	Flavobacterium johnsoniae	[424]
Starch (Amylopectin, Amylose, 1,4-alpha-D-Glucan, Pullulan, Resistant starch)	Macromolecule degradation	Holdemania filiformis	[358]
Starch (Amylopectin, Amylose, 1,4-alpha-D-Glucan, Pullulan, Resistant starch)	Macromolecule degradation	Parabacteroides distasonis	[198]
Starch (Amylopectin, Amylose, 1,4-alpha-D-Glucan, Pullulan, Resistant starch)	Macromolecule degradation	Prevotella ruminicola (Bacteroides ruminicola)	[147]
Starch (Amylopectin, Amylose, 1,4-alpha-D-Glucan, Pullulan, Resistant starch)	Macromolecule degradation	Roseburia intestinalis	[83,84,96]
Starch (Amylopectin, Amylose, 1,4-alpha-D-Glucan, Pullulan, Resistant starch)	Macromolecule degradation	Roseburia inulinivorans	[95,96,292]
Starch (Amylopectin, Amylose, 1,4-alpha-D-Glucan, Pullulan, Resistant starch)	Macromolecule degradation	Ruminococcus bromii	[94,95,96,280,350,371,371,372]
Starch (Amylopectin, Amylose, 1,4-alpha-D-Glucan, Pullulan, Resistant starch)	Macromolecule degradation	Streptococcus bovis (Streptococcus equinus)	[147]
Stearic acid (Stearate, Octadecanoate)	Production (export)	Butyrivibrio proteoclasticus	[217]
Stearic acid (Stearate, Octadecanoate)	Consumption (import)	Desulfarculus baarsii	[196]
Stearic acid (Stearate, Octadecanoate)	Consumption (import)	Syntrophomonas wolfei	[314,321]
Succinate	Production (export)	Actinobacillus succinogenes	[112]
Succinate	Consumption (import)	Aeromicrobium marinum	[36]
Succinate	Production (export)	Alistipes putredinis	[252]
Succinate	Production (export)	Alistipes shahii	[310]
Succinate	Production (export)	Anaerostipes caccae	[285]
Succinate	Consumption (import)	Bacillus subtilis	[118]
Succinate	Production (export)	Bacteroides caccae	[96,185,198,255]
Succinate	Production (export)	Bacteroides cellulosilyticus	[96,185,198,255]
Succinate	Production (export)	Bacteroides coprocola	[96,185,198,255]
Succinate	Production (export)	Bacteroides coprophilus	[96,185,198,255]
Succinate	Production (export)	Bacteroides dorei	[96,185,198,255]
Succinate	Production (export)	Bacteroides eggerthii	[96,185,198,255]
Succinate	Production (export)	Bacteroides finegoldii (Alistipes finegoldii)	[252,96,185,198,255]
Succinate	Production (export)	Bacteroides fragilis	[198,96,185,198,255]
Succinate	Production (export)	Bacteroides helcogenes	[96,185,198,255]
Succinate	Production (export)	Bacteroides intestinalis	[96,185,198,255]
Succinate	Production (export)	Bacteroides ovatus	[190,96,185,198,255]
Succinate	Production (export)	Bacteroides pectinophilus	[96,185,198,255]
Succinate	Production (export)	Bacteroides plebeius	[96,185,198,255]
Succinate	Production (export)	Bacteroides salanitronis	[96,185,198,255]
Succinate	Production (export)	Bacteroides stercoris	[96,185,198,255]
Succinate	Production (export)	Bacteroides thetaiotaomicron	[118,199,281,96,185,198,255]
Succinate	Production (export)	Bacteroides uniformis	[96,185,198,255]
Succinate	Production (export)	Bacteroides vulgatus	[96,185,198,255]
Succinate	Production (export)	Bacteroides xylanisolvens	[44,96,185,198,255]
Succinate	Production (export)	Bifidobacterium adolescentis	[91]
Succinate	Production (export)	Bifidobacterium angulatum	[91]
Succinate	Production (export)	Bifidobacterium animalis	[91]
Succinate	Production (export)	Bifidobacterium bifidum	[91]
Succinate	Production (export)	Bifidobacterium breve	[91]
Succinate	Production (export)	Bifidobacterium catenulatum	[91]
Succinate	Production (export)	Bifidobacterium dentium	[91]
Succinate	Production (export)	Bifidobacterium gallicum	[91]
Succinate	Production (export)	Bifidobacterium longum (Bifidobacterium infantis, Bifidobacterium suis)	[91,295,91,91]
Succinate	Production (export)	Bifidobacterium pseudocatenulatum	[91]
Succinate	Consumption (import)	Bilophila wadsworthia	[169]
Succinate	Production (export)	Blautia hydrogenotrophica (Ruminococcus hydrogenotrophicus)	[92]
Succinate	Production (export)	Clostridium acetobutylicum	[216]
Succinate	Production (export)	Clostridium beijerinckii	[216]
Succinate	Consumption (import)	Clostridium kluyveri	[42,294]
Succinate	Production (export)	Clostridium perfringens	[190]
Succinate	Consumption (import)	Colonocyte (host colon)	[336]
Succinate	Consumption (import)	Corynebacterium glutamicum	[118]
Succinate	Consumption (import)	Desulfobulbus propionicus	[288]
Succinate	Consumption (import)	Desulfovibrio aespoeensis	[106]
Succinate	Consumption (import)	Desulfovibrio desulfuricans	[106]
Succinate	Consumption (import)	Desulfovibrio fructosovorans	[106]
Succinate	Consumption (import)	Desulfovibrio magneticus	[106]
Succinate	Consumption (import)	Desulfovibrio piger	[106]
Succinate	Consumption (import)	Desulfovibrio salexigens	[106]
Succinate	Consumption (import)	Desulfovibrio vulgaris	[106]
Succinate	Consumption (import)	Ensifer meliloti (Sinorhizobium meliloti)	[118]
Succinate	Production (export)	Escherichia albertii	[316,339]
Succinate	Consumption (import) & production (export)	Escherichia coli	[118,342,316,339]
Succinate	Production (export)	Escherichia fergusonii	[316,339]
Succinate	Production (export)	Eubacterium siraeum	[128]
Succinate	Production (export)	Fibrobacter succinogenes (Bacteroides succinogenes)	[188,198,287,287,326]
Succinate	Production (export)	Geobacter sulfurreducens	[222,327]
Succinate	Production (export)	Holdemania filiformis	[358,359]
Succinate	Consumption (import)	Klebsiella pneumoniae	[133]
Succinate	Production (export)	Lactobacillus plantarum	[63,234]
Succinate	Production (export)	Marvinbryantia formatexigens	[256,364]
Succinate	Production (export)	Megamonas hypermegale	[277]
Succinate	Production (export)	Odoribacter splanchnicus	[107]
Succinate	Production (export)	Parabacteroides johnsonii	[276]
Succinate	Production (export)	Parabacteroides merdae	[276]
Succinate	Production (export)	Pelotomaculum thermopropionicum	[135]
Succinate	Production (export)	Prevotella amnii	[96,185]
Succinate	Production (export)	Prevotella bergensis	[96,185]
Succinate	Production (export)	Prevotella bivia	[96,185]
Succinate	Production (export)	Prevotella bryantii	[96,185]
Succinate	Production (export)	Prevotella buccae	[96,185]
Succinate	Production (export)	Prevotella buccalis	[96,185]
Succinate	Production (export)	Prevotella copri	[116,96,185]
Succinate	Production (export)	Prevotella disiens	[96,185]
Succinate	Production (export)	Prevotella marshii	[96,185]
Succinate	Production (export)	Prevotella melaninogenica (Bacteroides melaninogenicus)	[96,185]
Succinate	Production (export)	Prevotella multiformis	[96,185]
Succinate	Production (export)	Prevotella oralis	[96,185]
Succinate	Production (export)	Prevotella oris	[96,185]
Succinate	Production (export)	Prevotella ruminicola (Bacteroides ruminicola)	[323,96,185]
Succinate	Production (export)	Prevotella salivae	[96,185]
Succinate	Production (export)	Prevotella tannerae	[96,185]
Succinate	Production (export)	Prevotella timonensis	[96,185]
Succinate	Production (export)	Prevotella veroralis	[96,185]
Succinate	Production (export)	Pseudoflavonifractor capillosus	[40]
Succinate	Consumption (import)	Pseudomonas aeruginosa	[118,341]
Succinate	Production (export)	Pyramidobacter piscolens	[79]
Succinate	Consumption (import)	Rhizobium leguminosarum	[118]
Succinate	Consumption (import)	Rhodobacter capsulatus	[118]
Succinate	Production (export)	Ruminococcus bromii	[185]
Succinate	Production (export)	Ruminococcus flavefaciens	[168,185,188,287,287]
Succinate	Production (export)	Subdoligranulum variabile	[128]
Succinate	Consumption (import)	Veillonella parvula	[229,326]
Succinate	Production (export)	Wolinella succinogenes	[219,318]
Succinate	Consumption (import)	Xanthomonas campestris	[331]
Sucrose	Consumption (import)	Bacillus subtilis	[338]
Sucrose	Consumption (import)	Bacteroides xylanisolvens	[44]
Sucrose	Consumption (import)	Bifidobacterium breve	[292]
Sucrose	Consumption (import)	Butyrivibrio fibrisolvens	[217]
Sucrose	Consumption (import)	Butyrivibrio proteoclasticus	[217]
Sucrose	Consumption (import)	Catenibacterium mitsuokai	[146]
Sucrose	Consumption (import)	Clostridium acetobutylicum	[292,338]
Sucrose	Consumption (import)	Clostridium beijerinckii	[292]
Sucrose	Consumption (import)	Collinsella aerofaciens (Eubacterium aerofaciens)	[145]
Sucrose	Consumption (import)	Coprococcus comes	[124]
Sucrose	Consumption (import)	Coprococcus eutactus	[124]
Sucrose	Consumption (import)	Desulfovibrio piger	[88]
Sucrose	Consumption (import)	Dorea longicatena	[333]
Sucrose	Consumption (import)	Eubacterium rectale	[301]
Sucrose	Consumption (import)	Fusobacterium mortiferum	[338]
Sucrose	Consumption (import)	Holdemania filiformis	[358,359]
Sucrose	Consumption (import)	Klebsiella pneumoniae	[133,178,338]
Sucrose	Consumption (import)	Lactobacillus casei	[338]
Sucrose	Consumption (import)	Leptotrichia buccalis	[338]
Sucrose	Consumption (import)	Marvinbryantia formatexigens	[364]
Sucrose	Consumption (import)	Parabacteroides distasonis	[276]
Sucrose	Consumption (import)	Parabacteroides merdae	[276]
Sucrose	Consumption (import)	Prevotella copri	[116]
Sucrose	Consumption (import)	Roseburia intestinalis	[83]
Sucrose	Consumption (import)	Streptococcus bovis (Streptococcus equinus)	[205]
Sucrose	Consumption (import)	Streptococcus mutans	[187,338]
Sucrose	Consumption (import)	Subdoligranulum variabile	[128]
Sucrose	Consumption (import)	Sulfolobus solfataricus	[7]
Sucrose	Consumption (import)	Xanthomonas campestris	[331]
Sulfate (Sulfuric acid)	Production (export)	Acidithiobacillus caldus	[373,Supplementary Data 2d]
Sulfate (Sulfuric acid)	Production (export)	Allochromatium vinosum	[Supplementary Data 2d]
Sulfate (Sulfuric acid)	Production (export)	Aquifex aeolicus	[Supplementary Data 2d]
Sulfate (Sulfuric acid)	Consumption (import)	Archaeoglobus fulgidus	[Supplementary Data 2d]
Sulfate (Sulfuric acid)	Consumption (import)	Archaeoglobus profundus	[Supplementary Data 2d]
Sulfate (Sulfuric acid)	Consumption (import)	Baumannia cicadellinicola	[368]
Sulfate (Sulfuric acid)	Consumption (import)	Bilophila wadsworthia	[75,75,169,225]
Sulfate (Sulfuric acid)	Consumption (import)	Buchnera aphidicola	[78]
Sulfate (Sulfuric acid)	Consumption (import)	Caldivirga maquilingensis	[Supplementary Data 2d]
Sulfate (Sulfuric acid)	Production (export)	Chlorobium chlorochromatii	[Supplementary Data 2d]
Sulfate (Sulfuric acid)	Production (export)	Chlorobium ferrooxidans	[Supplementary Data 2d]
Sulfate (Sulfuric acid)	Production (export)	Chlorobium limicola	[Supplementary Data 2d]
Sulfate (Sulfuric acid)	Production (export)	Chlorobium phaeobacteroides	[Supplementary Data 2d]
Sulfate (Sulfuric acid)	Production (export)	Chlorobium vibrioformis	[Supplementary Data 2d]
Sulfate (Sulfuric acid)	Consumption (import)	Colonocyte (host colon)	[255,336]
Sulfate (Sulfuric acid)	Consumption (import)	Deinococcus radiodurans	[125]
Sulfate (Sulfuric acid)	Consumption (import)	Desulfarculus baarsii	[291,Supplementary Data 2d]
Sulfate (Sulfuric acid)	Consumption (import)	Desulfatibacillum alkenivorans	[302,Supplementary Data 2d]
Sulfate (Sulfuric acid)	Consumption (import)	Desulfobacterium autotrophicum	[Supplementary Data 2d]
Sulfate (Sulfuric acid)	Consumption (import)	Desulfobulbus propionicus	[288,291,318,Supplementary Data 2d]
Sulfate (Sulfuric acid)	Consumption (import)	Desulfococcus oleovorans	[Supplementary Data 2d]
Sulfate (Sulfuric acid)	Consumption (import)	Desulfohalobium retbaense	[Supplementary Data 2d]
Sulfate (Sulfuric acid)	Consumption (import)	Desulfomicrobium baculatum	[Supplementary Data 2d]
Sulfate (Sulfuric acid)	Consumption (import)	Desulfonatronospira thiodismutans	[Supplementary Data 2d]
Sulfate (Sulfuric acid)	Consumption (import)	Desulfotalea psychrophila	[Supplementary Data 2d]
Sulfate (Sulfuric acid)	Consumption (import)	Desulfotomaculum acetoxidans	[Supplementary Data 2d]
Sulfate (Sulfuric acid)	Consumption (import)	Desulfotomaculum nigrificans	[135,Supplementary Data 2d]
Sulfate (Sulfuric acid)	Consumption (import)	Desulfotomaculum reducens	[Supplementary Data 2d]
Sulfate (Sulfuric acid)	Consumption (import)	Desulfovibrio aespoeensis	[Supplementary Data 2d,255,255]
Sulfate (Sulfuric acid)	Consumption (import)	Desulfovibrio desulfuricans	[59,Supplementary Data 2d,255,255]
Sulfate (Sulfuric acid)	Consumption (import)	Desulfovibrio fructosovorans	[Supplementary Data 2d,255,255]
Sulfate (Sulfuric acid)	Consumption (import)	Desulfovibrio magneticus	[Supplementary Data 2d,255,255]
Sulfate (Sulfuric acid)	Consumption (import)	Desulfovibrio piger	[255,255,Supplementary Data 2d,255,255]
Sulfate (Sulfuric acid)	Consumption (import)	Desulfovibrio salexigens	[Supplementary Data 2d,255,255]
Sulfate (Sulfuric acid)	Consumption (import)	Desulfovibrio vulgaris	[157,302,Supplementary Data 2d,255,255]
Sulfate (Sulfuric acid)	Consumption (import)	Escherichia coli	[6]
Sulfate (Sulfuric acid)	Consumption (import)	Methanosarcina acetivorans	[109]
Sulfate (Sulfuric acid)	Consumption (import)	Methanosarcina barkeri	[109,109]
Sulfate (Sulfuric acid)	Consumption (import)	Methanosarcina mazei	[109]
Sulfate (Sulfuric acid)	Production (export)	Methylobacterium extorquens (Methylobacterium chloromethanicum)	[Supplementary Data 2d]
Sulfate (Sulfuric acid)	Production (export)	Paracoccus denitrificans	[Supplementary Data 2d]
Sulfate (Sulfuric acid)	Consumption (import)	Pyramidobacter piscolens	[79]
Sulfate (Sulfuric acid)	Production (export)	Rhodobacter capsulatus	[Supplementary Data 2d]
Sulfate (Sulfuric acid)	Production (export)	Rhodobacter sphaeroides	[Supplementary Data 2d]
Sulfate (Sulfuric acid)	Production (export)	Rhodopseudomonas palustris	[Supplementary Data 2d]
Sulfate (Sulfuric acid)	Consumption (import)	Ruminococcus bromii	[121]
Sulfate (Sulfuric acid)	Production (export)	Starkeya novella	[Supplementary Data 2d]
Sulfate (Sulfuric acid)	Production (export)	Sulfolobus acidocaldarius	[Supplementary Data 2d]
Sulfate (Sulfuric acid)	Production (export)	Sulfolobus islandicus	[Supplementary Data 2d]
Sulfate (Sulfuric acid)	Production (export)	Sulfolobus solfataricus	[Supplementary Data 2d]
Sulfate (Sulfuric acid)	Production (export)	Sulfolobus tokodaii	[Supplementary Data 2d]
Sulfate (Sulfuric acid)	Consumption (import)	Syntrophobacter fumaroxidans	[302,319,Supplementary Data 2d]
Sulfate (Sulfuric acid)	Consumption (import)	Thermodesulfovibrio yellowstonii	[Supplementary Data 2d]
Sulfate (Sulfuric acid)	Production (export)	Thiobacillus denitrificans	[Supplementary Data 2d]
Sulfate (Sulfuric acid)	Production (export)	Thiomicrospira crunogena	[Supplementary Data 2d]
Sulfate (Sulfuric acid)	Production (export)	Wolinella succinogenes	[Supplementary Data 2d]
Sulfate (Sulfuric acid)	Production (export)	Xanthobacter autotrophicus	[Supplementary Data 2d]
Sulfur (Elemental sulfur)	Consumption (import)	Acidithiobacillus caldus	[Supplementary Data 2d]
Sulfur (Elemental sulfur)	Consumption (import)	Allochromatium vinosum	[Supplementary Data 2d]
Sulfur (Elemental sulfur)	Consumption (import)	Aquifex aeolicus	[Supplementary Data 2d]
Sulfur (Elemental sulfur)	Consumption (import)	Chlorobium chlorochromatii	[Supplementary Data 2d]
Sulfur (Elemental sulfur)	Consumption (import)	Chlorobium ferrooxidans	[Supplementary Data 2d]
Sulfur (Elemental sulfur)	Consumption (import)	Chlorobium limicola	[Supplementary Data 2d]
Sulfur (Elemental sulfur)	Consumption (import)	Chlorobium phaeobacteroides	[Supplementary Data 2d]
Sulfur (Elemental sulfur)	Consumption (import)	Chlorobium vibrioformis	[Supplementary Data 2d]
Sulfur (Elemental sulfur)	Consumption (import)	Methylobacterium extorquens (Methylobacterium chloromethanicum)	[Supplementary Data 2d]
Sulfur (Elemental sulfur)	Consumption (import)	Paracoccus denitrificans	[Supplementary Data 2d]
Sulfur (Elemental sulfur)	Consumption (import)	Rhodobacter capsulatus	[Supplementary Data 2d]
Sulfur (Elemental sulfur)	Consumption (import)	Rhodobacter sphaeroides	[Supplementary Data 2d]
Sulfur (Elemental sulfur)	Consumption (import)	Rhodopseudomonas palustris	[Supplementary Data 2d]
Sulfur (Elemental sulfur)	Consumption (import)	Starkeya novella	[Supplementary Data 2d]
Sulfur (Elemental sulfur)	Consumption (import)	Sulfolobus acidocaldarius	[Supplementary Data 2d]
Sulfur (Elemental sulfur)	Consumption (import)	Sulfolobus islandicus	[Supplementary Data 2d]
Sulfur (Elemental sulfur)	Consumption (import)	Sulfolobus solfataricus	[Supplementary Data 2d]
Sulfur (Elemental sulfur)	Consumption (import)	Sulfolobus tokodaii	[Supplementary Data 2d]
Sulfur (Elemental sulfur)	Consumption (import)	Thiobacillus denitrificans	[Supplementary Data 2d]
Sulfur (Elemental sulfur)	Consumption (import)	Thiomicrospira crunogena	[Supplementary Data 2d]
Sulfur (Elemental sulfur)	Consumption (import)	Wolinella succinogenes	[Supplementary Data 2d]
Sulfur (Elemental sulfur)	Consumption (import)	Xanthobacter autotrophicus	[Supplementary Data 2d]
Taurine	Consumption (import)	Bilophila wadsworthia	[169,225,304]
Taurine	Consumption (import)	Colonocyte (host colon)	[336]
Taurochenodeoxycholate	Consumption (import)	Bacteroides fragilis	[257]
Taurochenodeoxycholate	Consumption (import)	Bacteroides vulgatus	[257]
Taurochenodeoxycholate	Consumption (import)	Bifidobacterium adolescentis	[29,330]
Taurochenodeoxycholate	Consumption (import)	Bifidobacterium animalis	[330]
Taurochenodeoxycholate	Consumption (import)	Bifidobacterium bifidum	[29,257,330]
Taurochenodeoxycholate	Consumption (import)	Bifidobacterium breve	[330]
Taurochenodeoxycholate	Consumption (import)	Bifidobacterium longum (Bifidobacterium infantis, Bifidobacterium suis)	[29,257,330]
Taurochenodeoxycholate	Consumption (import)	Bilophila wadsworthia	[304]
Taurochenodeoxycholate	Consumption (import)	Clostridium perfringens	[29,257]
Taurochenodeoxycholate	Production (export)	Hepatocyte (host liver)	—
Taurochenodeoxycholate	Consumption (import)	Lactobacillus acidophilus	[16,330]
Taurochenodeoxycholate	Consumption (import)	Lactobacillus brevis	[330]
Taurochenodeoxycholate	Consumption (import)	Lactobacillus buchneri	[330]
Taurochenodeoxycholate	Consumption (import)	Lactobacillus gasseri	[16,330]
Taurochenodeoxycholate	Consumption (import)	Lactobacillus hilgardii	[330]
Taurochenodeoxycholate	Consumption (import)	Lactobacillus johnsonii	[16,29,257,330]
Taurochenodeoxycholate	Consumption (import)	Lactobacillus plantarum	[16,29,257,330]
Taurochenodeoxycholate	Consumption (import)	Listeria monocytogenes	[16,17]
Taurocholate	Consumption (import)	Bacteroides fragilis	[257]
Taurocholate	Consumption (import)	Bacteroides vulgatus	[257]
Taurocholate	Consumption (import)	Bifidobacterium adolescentis	[29,330]
Taurocholate	Consumption (import)	Bifidobacterium animalis	[330]
Taurocholate	Consumption (import)	Bifidobacterium bifidum	[29,257,330]
Taurocholate	Consumption (import)	Bifidobacterium breve	[330]
Taurocholate	Consumption (import)	Bifidobacterium longum (Bifidobacterium infantis, Bifidobacterium suis)	[29,257,330]
Taurocholate	Consumption (import)	Bilophila wadsworthia	[75,304]
Taurocholate	Consumption (import)	Clostridium difficile	[335]
Taurocholate	Consumption (import)	Clostridium perfringens	[29,257]
Taurocholate	Production (export)	Hepatocyte (host liver)	—
Taurocholate	Consumption (import)	Lactobacillus acidophilus	[16,257,330]
Taurocholate	Consumption (import)	Lactobacillus brevis	[330]
Taurocholate	Consumption (import)	Lactobacillus buchneri	[330]
Taurocholate	Consumption (import)	Lactobacillus gasseri	[16,330]
Taurocholate	Consumption (import)	Lactobacillus hilgardii	[330]
Taurocholate	Consumption (import)	Lactobacillus johnsonii	[16,29,257,330]
Taurocholate	Consumption (import)	Lactobacillus plantarum	[16,29,257,330]
Taurocholate	Consumption (import)	Listeria monocytogenes	[16,17]
Taurodeoxycholate	Consumption (import)	Bacteroides fragilis	[257]
Taurodeoxycholate	Consumption (import)	Bacteroides vulgatus	[257]
Taurodeoxycholate	Consumption (import)	Bifidobacterium adolescentis	[29,330]
Taurodeoxycholate	Consumption (import)	Bifidobacterium animalis	[330]
Taurodeoxycholate	Consumption (import)	Bifidobacterium bifidum	[29,257,330]
Taurodeoxycholate	Consumption (import)	Bifidobacterium breve	[330]
Taurodeoxycholate	Consumption (import)	Bifidobacterium longum (Bifidobacterium infantis, Bifidobacterium suis)	[29,257,330]
Taurodeoxycholate	Consumption (import)	Bilophila wadsworthia	[304]
Taurodeoxycholate	Consumption (import)	Clostridium perfringens	[29,257]
Taurodeoxycholate	Consumption (import)	Lactobacillus acidophilus	[16,330]
Taurodeoxycholate	Consumption (import)	Lactobacillus brevis	[330]
Taurodeoxycholate	Consumption (import)	Lactobacillus buchneri	[330]
Taurodeoxycholate	Consumption (import)	Lactobacillus gasseri	[16,330]
Taurodeoxycholate	Consumption (import)	Lactobacillus hilgardii	[330]
Taurodeoxycholate	Consumption (import)	Lactobacillus johnsonii	[16,29,257,330]
Taurodeoxycholate	Consumption (import)	Lactobacillus plantarum	[16,29,257,330]
Taurodeoxycholate	Consumption (import)	Listeria monocytogenes	[16,17]
Taurolithocholate	Consumption (import)	Bifidobacterium adolescentis	[29,330]
Taurolithocholate	Consumption (import)	Bifidobacterium animalis	[330]
Taurolithocholate	Consumption (import)	Bifidobacterium bifidum	[29,330]
Taurolithocholate	Consumption (import)	Bifidobacterium breve	[330]
Taurolithocholate	Consumption (import)	Bifidobacterium longum (Bifidobacterium infantis, Bifidobacterium suis)	[29,330]
Taurolithocholate	Consumption (import)	Bilophila wadsworthia	[304]
Taurolithocholate	Consumption (import)	Clostridium perfringens	[29]
Taurolithocholate	Consumption (import)	Lactobacillus acidophilus	[16,330]
Taurolithocholate	Consumption (import)	Lactobacillus brevis	[330]
Taurolithocholate	Consumption (import)	Lactobacillus buchneri	[330]
Taurolithocholate	Consumption (import)	Lactobacillus gasseri	[16,330]
Taurolithocholate	Consumption (import)	Lactobacillus hilgardii	[330]
Taurolithocholate	Consumption (import)	Lactobacillus plantarum	[16,29,330]
Taurolithocholate	Consumption (import)	Listeria monocytogenes	[16,17]
Thiamine (Vitamin B1, Thiamin)	Consumption (import)	Bacillus subtilis	[260]
Thiamine (Vitamin B1, Thiamin)	Production (export)	Baumannia cicadellinicola	[207,368]
Thiamine (Vitamin B1, Thiamin)	Production (export)	Bifidobacterium bifidum	[267]
Thiamine (Vitamin B1, Thiamin)	Production (export)	Bifidobacterium breve	[267]
Thiamine (Vitamin B1, Thiamin)	Production (export)	Bifidobacterium longum (Bifidobacterium infantis, Bifidobacterium suis)	[174,267]
Thiamine (Vitamin B1, Thiamin)	Consumption (import)	Brucella abortus	[242]
Thiamine (Vitamin B1, Thiamin)	Consumption (import)	Brucella melitensis	[242]
Thiamine (Vitamin B1, Thiamin)	Consumption (import)	Brucella suis	[242]
Thiamine (Vitamin B1, Thiamin)	Consumption (import)	Clostridium beijerinckii	[242]
Thiamine (Vitamin B1, Thiamin)	Consumption (import)	Clostridium tetani	[242]
Thiamine (Vitamin B1, Thiamin)	Consumption (import)	Colonocyte (host colon)	[336]
Thiamine (Vitamin B1, Thiamin)	Consumption (import) & production (export)	Escherichia coli	[39,242]
Thiamine (Vitamin B1, Thiamin)	Consumption (import)	Lactobacillus casei	[89,120,242,260]
Thiamine (Vitamin B1, Thiamin)	Production (export)	Lactobacillus helveticus	[173,174]
Thiamine (Vitamin B1, Thiamin)	Consumption (import)	Lactococcus lactis	[89]
Thiamine (Vitamin B1, Thiamin)	Consumption (import)	Leuconostoc mesenteroides	[242]
Thiamine (Vitamin B1, Thiamin)	Consumption (import)	Listeria monocytogenes	[242]
Thiamine (Vitamin B1, Thiamin)	Consumption (import)	Neisseria gonorrhoeae	[242]
Thiamine (Vitamin B1, Thiamin)	Consumption (import)	Paenibacillus larvae	[242]
Thiamine (Vitamin B1, Thiamin)	Consumption (import)	Rhizobium leguminosarum	[242]
Thiamine (Vitamin B1, Thiamin)	Consumption (import)	Sodalis glossinidius	[309]
Thiamine (Vitamin B1, Thiamin)	Production (export)	Sphaerobacter thermophilus	[173]
Thiamine (Vitamin B1, Thiamin)	Consumption (import)	Staphylococcus aureus	[242]
Thiamine (Vitamin B1, Thiamin)	Consumption (import)	Streptococcus bovis (Streptococcus equinus)	[242]
Thiamine (Vitamin B1, Thiamin)	Consumption (import)	Streptococcus salivarius	[242]
Thiamine (Vitamin B1, Thiamin)	Consumption (import) & production (export)	Streptococcus thermophilus	[174,242]
Thiamine (Vitamin B1, Thiamin)	Production (export)	Wigglesworthia glossinidia	[309]
Thiosulfate	Consumption (import)	Acidithiobacillus caldus	[373]
Thiosulfate	Consumption (import)	Bilophila wadsworthia	[169]
Thiosulfate	Consumption (import)	Colonocyte (host colon)	[336]
Thiosulfate	Consumption (import)	Escherichia coli	[6]
Thiosulfate	Consumption (import)	Pyramidobacter piscolens	[79]
Thiosulfate	Consumption (import)	Ruminococcus bromii	[121]
Thiosulfate	Consumption (import)	Syntrophobacter fumaroxidans	[302]
Thymidine	Consumption (import)	Anaerotruncus colihominis	[170]
Thymine	Consumption (import)	Colonocyte (host colon)	[336]
Toluene	Consumption (import)	Geobacter metallireducens	[117,186]
Trehalose	Consumption (import)	Aeromicrobium marinum	[36]
Trehalose	Consumption (import)	Anaerotruncus colihominis	[170]
Trehalose	Consumption (import)	Bacteroides ovatus	[44]
Trehalose	Consumption (import)	Bacteroides thetaiotaomicron	[44]
Trehalose	Consumption (import)	Bacteroides xylanisolvens	[44]
Trehalose	Consumption (import)	Bifidobacterium breve	[247]
Trehalose	Consumption (import)	Blautia hydrogenotrophica (Ruminococcus hydrogenotrophicus)	[24]
Trehalose	Consumption (import)	Butyrivibrio fibrisolvens	[217]
Trehalose	Consumption (import)	Butyrivibrio proteoclasticus	[217]
Trehalose	Consumption (import)	Collinsella aerofaciens (Eubacterium aerofaciens)	[145]
Trehalose	Consumption (import)	Collinsella stercoris	[145]
Trehalose	Consumption (import)	Holdemania filiformis	[358]
Trehalose	Consumption (import)	Marvinbryantia formatexigens	[256]
Trehalose	Consumption (import)	Parabacteroides distasonis	[276]
Trehalose	Consumption (import)	Parabacteroides merdae	[276]
Trehalose	Consumption (import)	Pyrococcus furiosus	[6]
Trehalose	Consumption (import)	Shigella boydii	[365]
Trehalose	Consumption (import)	Subdoligranulum variabile	[128]
Trehalose	Consumption (import)	Sulfolobus solfataricus	[6]
Trehalose	Consumption (import)	Thermotoga maritima	[160]
Triglyceride	Macromolecule degradation	Acinetobacter calcoaceticus	[113,159,286]
Triglyceride	Macromolecule degradation	Acinetobacter radioresistens	[286]
Triglyceride	Macromolecule degradation	Bacillus licheniformis	[113]
Triglyceride	Macromolecule degradation	Bacillus megaterium	[361]
Triglyceride	Macromolecule degradation	Bacillus pumilus	[113,286]
Triglyceride	Macromolecule degradation	Bacillus subtilis	[113,214]
Triglyceride	Macromolecule degradation	Burkholderia ambifaria	[236]
Triglyceride	Macromolecule degradation	Burkholderia cenocepacia	[236]
Triglyceride	Macromolecule degradation	Burkholderia cepacia	[236,286,298]
Triglyceride	Macromolecule degradation	Burkholderia glumae	[138]
Triglyceride	Macromolecule degradation	Burkholderia multivorans	[236]
Triglyceride	Macromolecule degradation	Burkholderia vietnamiensis	[236]
Triglyceride	Macromolecule degradation	Clostridium botulinum	[196]
Triglyceride	Macromolecule degradation	Clostridium sporogenes	[271]
Triglyceride	Macromolecule degradation	Enterococcus faecalis (Streptococcus faecalis)	[196]
Triglyceride	Macromolecule degradation	Lactobacillus plantarum	[361]
Triglyceride	Macromolecule degradation	Micrococcus luteus	[113]
Triglyceride	Macromolecule degradation	Propionibacterium acnes	[286]
Triglyceride	Macromolecule degradation	Pseudomonas aeruginosa	[138,286,325]
Triglyceride	Macromolecule degradation	Pseudomonas fluorescens	[138,286,361]
Triglyceride	Macromolecule degradation	Pseudomonas mendocina	[298]
Triglyceride	Macromolecule degradation	Pseudomonas putida	[214,286]
Triglyceride	Macromolecule degradation	Ralstonia pickettii	[119]
Triglyceride	Macromolecule degradation	Staphylococcus aureus	[113,286,305]
Triglyceride	Macromolecule degradation	Thermus thermophilus	[99]
Trimethylamine	Consumption (import)	Acetohalobium arabaticum	[233]
Trimethylamine	Production (export)	Bacteroides thetaiotaomicron	[308]
Trimethylamine	Production (export)	Enterococcus faecalis (Streptococcus faecalis)	[33]
Trimethylamine	Production (export)	Escherichia coli	[33]
Trimethylamine	Production (export)	Faecalibacterium prausnitzii	[230]
Trimethylamine	Production (export)	Klebsiella pneumoniae	[33]
Trimethylamine	Consumption (import)	Methanohalophilus mahii	[28]
Trimethylamine	Consumption (import)	Methanosarcina acetivorans	[28]
Trimethylamine	Consumption (import)	Methanosarcina barkeri	[351,28]
Trimethylamine	Consumption (import)	Methanosarcina mazei	[28]
Trimethylamine	Consumption (import)	Methanosphaera stadtmanae	[28]
Trimethylamine	Production (export)	Pseudomonas aeruginosa	[33]
Trimethylamine	Production (export)	Staphylococcus aureus	[33]
Trimethylamine	Production (export)	Streptococcus parasanguinis	[183]
Trimethylamine	Production (export)	Streptococcus pneumoniae	[33]
Trimethylamine N-oxide (Trimethylamine-N-oxide)	Production (export)	Faecalibacterium prausnitzii	[230]
Tryptamine	Production (export)	Lactobacillus acidophilus	[308]
Tryptamine	Consumption (import)	Prevotella ruminicola (Bacteroides ruminicola)	[244]
Tyramine	Production (export)	Bacteroides ovatus	[308]
Tyramine	Production (export)	Bacteroides thetaiotaomicron	[308]
Tyramine	Production (export)	Enterococcus faecalis (Streptococcus faecalis)	[243]
Tyramine	Production (export)	Enterococcus faecium (Streptococcus faecium)	[243]
Tyramine	Consumption (import)	Klebsiella pneumoniae	[178]
Tyramine	Production (export)	Lactobacillus paracasei	[243]
Tyramine	Production (export)	Lactobacillus rhamnosus	[243]
Uracil	Consumption (import)	Colonocyte (host colon)	[336]
Urea	Consumption (import)	Anaerococcus hydrogenalis	[90]
Urea	Consumption (import)	Anaerococcus lactolyticus	[90]
Urea	Consumption (import)	Anaerococcus prevotii	[90]
Urea	Consumption (import)	Anaerococcus tetradius	[90]
Urea	Production (export)	Bacteroides thetaiotaomicron	[118]
Urea	Consumption (import)	Bifidobacterium adolescentis	[346]
Urea	Consumption (import)	Bifidobacterium angulatum	[346]
Urea	Consumption (import)	Bifidobacterium animalis	[346]
Urea	Consumption (import)	Bifidobacterium bifidum	[346]
Urea	Consumption (import)	Bifidobacterium breve	[346]
Urea	Consumption (import)	Bifidobacterium catenulatum	[346]
Urea	Consumption (import)	Bifidobacterium dentium	[346]
Urea	Consumption (import)	Bifidobacterium gallicum	[346]
Urea	Consumption (import)	Bifidobacterium longum (Bifidobacterium infantis, Bifidobacterium suis)	[346,346]
Urea	Consumption (import)	Bifidobacterium pseudocatenulatum	[346]
Urea	Consumption (import)	Clostridium acetobutylicum	[346]
Urea	Consumption (import)	Clostridium asparagiforme	[346]
Urea	Consumption (import)	Clostridium bartlettii	[346]
Urea	Consumption (import)	Clostridium beijerinckii	[346]
Urea	Consumption (import)	Clostridium bolteae	[346]
Urea	Consumption (import)	Clostridium botulinum	[346]
Urea	Consumption (import)	Clostridium butyricum	[346]
Urea	Consumption (import)	Clostridium carboxidivorans	[346]
Urea	Consumption (import)	Clostridium cellulolyticum	[346]
Urea	Consumption (import)	Clostridium cellulovorans	[346]
Urea	Consumption (import)	Clostridium cf	[346]
Urea	Consumption (import)	Clostridium difficile	[346]
Urea	Consumption (import)	Clostridium hathewayi	[346]
Urea	Consumption (import)	Clostridium hiranonis	[346]
Urea	Consumption (import)	Clostridium hylemonae	[346]
Urea	Consumption (import)	Clostridium kluyveri	[346]
Urea	Consumption (import)	Clostridium leptum	[346]
Urea	Consumption (import)	Clostridium ljungdahlii	[346]
Urea	Consumption (import)	Clostridium methylpentosum	[346]
Urea	Consumption (import)	Clostridium nexile	[346]
Urea	Consumption (import)	Clostridium novyi	[346]
Urea	Consumption (import)	Clostridium papyrosolvens	[346]
Urea	Consumption (import)	Clostridium perfringens	[346]
Urea	Consumption (import)	Clostridium phytofermentans	[346]
Urea	Consumption (import)	Clostridium saccharolyticum	[346]
Urea	Consumption (import)	Clostridium scindens	[346]
Urea	Consumption (import)	Clostridium sporogenes	[346]
Urea	Consumption (import)	Clostridium sticklandii	[346]
Urea	Consumption (import)	Clostridium symbiosum	[346]
Urea	Consumption (import)	Clostridium tetani	[346]
Urea	Consumption (import)	Clostridium thermocellum	[346]
Urea	Production (export)	Colonocyte (host colon)	[23,92]
Urea	Consumption (import)	Desulfovibrio piger	[88]
Urea	Consumption (import)	Helicobacter pylori	[105,202,209]
Urea	Consumption (import)	Klebsiella pneumoniae	[178,346]
Urea	Consumption (import)	Klebsiella variicola	[346]
Urea	Consumption (import)	Proteus mirabilis	[346,346]
Urea	Consumption (import)	Proteus penneri	[346]
Urea	Consumption (import)	Thermococcus kodakaraensis	[284]
Urea	Consumption (import)	Ureaplasma parvum	[235,273]
Urea	Consumption (import)	Ureaplasma urealyticum	[235,273]
Uridine	Consumption (import)	Anaerotruncus colihominis	[170]
Uridine	Consumption (import)	Colonocyte (host colon)	[336]
Valerate (Pentanoic acid, Pentanoate)	Consumption (import)	Achromobacter piechaudii	[156]
Valerate (Pentanoic acid, Pentanoate)	Production (export)	Anaerostipes caccae	[285]
Valerate (Pentanoic acid, Pentanoate)	Production (export)	Bacteroides fragilis	[195]
Valerate (Pentanoic acid, Pentanoate)	Production (export)	Bacteroides thetaiotaomicron	[195]
Valerate (Pentanoic acid, Pentanoate)	Consumption (import)	Butyrivibrio crossotus	[217]
Valerate (Pentanoic acid, Pentanoate)	Consumption (import)	Butyrivibrio fibrisolvens	[217]
Valerate (Pentanoic acid, Pentanoate)	Consumption (import)	Butyrivibrio proteoclasticus	[217]
Valerate (Pentanoic acid, Pentanoate)	Production (export)	Clostridium kluyveri	[294]
Valerate (Pentanoic acid, Pentanoate)	Consumption (import)	Colonocyte (host colon)	[336]
Valerate (Pentanoic acid, Pentanoate)	Consumption (import)	Desulfotomaculum acetoxidans	[196]
Valerate (Pentanoic acid, Pentanoate)	Consumption (import)	Fibrobacter succinogenes (Bacteroides succinogenes)	[196]
Valerate (Pentanoic acid, Pentanoate)	Consumption (import)	Geobacter metallireducens	[186]
Valerate (Pentanoic acid, Pentanoate)	Production (export)	Megasphaera micronuciformis	[85]
Valerate (Pentanoic acid, Pentanoate)	Consumption (import)	Prevotella ruminicola (Bacteroides ruminicola)	[244]
Valerate (Pentanoic acid, Pentanoate)	Consumption (import)	Syntrophobacter fumaroxidans	[302]
Valerate (Pentanoic acid, Pentanoate)	Consumption (import)	Syntrophobotulus glycolicus	[302]
Valerate (Pentanoic acid, Pentanoate)	Consumption (import)	Syntrophomonas wolfei	[302,321,367]
Valerate (Pentanoic acid, Pentanoate)	Consumption (import)	Syntrophothermus lipocalidus	[302]
Valerate (Pentanoic acid, Pentanoate)	Consumption (import)	Syntrophus aciditrophicus	[302]
Xanthine	Consumption (import)	Colonocyte (host colon)	[336]
XOS (Xylooligosaccharide)	Consumption (import)	Anaerostipes caccae	[293]
XOS (Xylooligosaccharide)	Consumption (import)	Bacteroides fragilis	[54]
XOS (Xylooligosaccharide)	Consumption (import)	Bacteroides thetaiotaomicron	[293]
XOS (Xylooligosaccharide)	Consumption (import)	Bacteroides vulgatus	[293]
XOS (Xylooligosaccharide)	Consumption (import)	Bifidobacterium adolescentis	[1]
XOS (Xylooligosaccharide)	Consumption (import)	Bifidobacterium breve	[1]
XOS (Xylooligosaccharide)	Consumption (import)	Bifidobacterium longum (Bifidobacterium infantis, Bifidobacterium suis)	[1,293]
XOS (Xylooligosaccharide)	Consumption (import)	Eubacterium rectale	[293]
XOS (Xylooligosaccharide)	Consumption (import)	Klebsiella pneumoniae	[1]
XOS (Xylooligosaccharide)	Consumption (import)	Lactobacillus acidophilus	[1]
XOS (Xylooligosaccharide)	Consumption (import)	Lactobacillus plantarum	[1]
XOS (Xylooligosaccharide)	Consumption (import)	Lactococcus lactis	[1]
XOS (Xylooligosaccharide)	Consumption (import)	Roseburia intestinalis	[293]
XOS (Xylooligosaccharide)	Consumption (import)	Roseburia inulinivorans	[293]
Xylitol	Consumption (import)	Colonocyte (host colon)	[50]
Xylitol	Production (export)	Mycobacterium smegmatis	[50]
Xylitol	Consumption (import)	Streptococcus mutans	[238]
Zn2+ (Zinc)	Consumption (import)	Colonocyte (host colon)	[336]