cluster_id splitr_sequence splitr_count splitr_span_pvalue splitr_pos_pvalue splitr_min_pvalue adjacent altsplice break_adj_entropy1 break_adj_entropy2 break_adj_entropy_min breakpoint_homology breakseqs_estislands_percident cdna_breakseqs_percident deletion est_breakseqs_percident eversion exonboundaries expression1 expression2 gene1 gene2 gene_align_strand1 gene_align_strand2 gene_chromosome1 gene_chromosome2 gene_end1 gene_end2 gene_location1 gene_location2 gene_name1 gene_name2 gene_start1 gene_start2 gene_strand1 gene_strand2 genome_breakseqs_percident genomic_break_pos1 genomic_break_pos2 genomic_strand1 genomic_strand2 interchromosomal interrupted_index1 interrupted_index2 inversion library_name max_map_count max_repeat_proportion mean_map_count min_map_count num_multi_map num_splice_variants orf read_through repeat_proportion1 repeat_proportion2 span_count span_coverage1 span_coverage2 span_coverage_max span_coverage_min splice_score splicing_index1 splicing_index2 probability dataset conjoing_id t3_concentration 40375 CGAGGATCTCGCTGCACCCGTTCCACCAGCCCATGGTGCCGAGTGCTCCGAGATGAATCCAAAGGTGAGTGGAGGGGGCTCTGGAACTCGGCCAGGCCAGAGCCAATCTGGTTAACATTGGGCAGAGACCCACCATAATGAGAGCTCCTTGTGTATGCCAGTCGCAGTTTTTGGGCCTGTAAC|GTCACGTGCAAGGCTGCCAGGGCCTCATCTATGGCAGCCAGGTAGTCAGGCAGCAGGTCCAGGAGACAAGTGGCCAAAAAGACGCCCCCCGCGAAACAGCTTACTAGGCTCAGGGCTTTCTGGCGGGAAGCTGGGTAGG 9 0.517992590381394 0.716553534976196 0.854301534822987 Y Y 3.50744965188915 3.5204207511572005 3.50744965188915 3 0.992828028598793 0.0 Y 0.469274116310667 N Y 2246 4920 ENSG00000160741 ENSG00000143570 - + 1 1 153931101 153940188 intron coding CRTC2 SLC39A1 153920145 153931575 - - 0.0 153927642 153934696 + - N - 4.41137799601659 N SA464 1 0.0 1.0 1 0 1 N Y 0.0 0.0 14 1.1269463930813302 0.9345409113357378 1.1269463930813302 0.9345409113357378 4 - 47.7142857142857 0.9239247729511948 HCT116-unstranded CGHSA0331 0.0 110996 CGGGGGCCTCGGCGGAGCGGTGCTCACGGGTCGTCTCCAGCAGCTCCCGGTAGCGCCGCTGCTCCAGCTCCACCTCACTGCGCACGGCCTCGATGGCCTGGTTGACCAGCTCCAACTCCAGCACATCCGGGCGCGGCTCCTCCCCCAGGCCCAGGGTGCCATTCTCCCTCTGCGCGGGGGGCTTGGGCAGCTCAGGGTTGTAGGGGTCGTAACCCAGC|CCTGTGTGCGTCCGCAGGTGCGACTTTAGGTGCGAGGACTTGTAGTAGGCTTTGGCGCAGTCCGGGAAGGGACAGCGGTGGCTCTTGGCGGCGGCGGAGGGCGCGGCGCCGGGGGCGCGGCCCGAGGACGGGGACGAGGCGGCTGAGGAGGAGGAGGCGGGCGAGGCGCCCCCCGGGGCGGCTCC 33 0.985733114098631 0.942378926689612 0.516293121096307 Y Y 3.31638839653118 3.55401162459584 3.31638839653118 2 0.0 0.0 Y 0.0 N Y 6501 8319 ENSG00000079313 ENSG00000129911 - + 19 19 1848452 1863567 coding intron REXO1 KLF16 1815248 1852399 - - 0.0 1828630 1863040 + - N - 1.74262290255577 N SA464 1 0.4054054054054049 1.0 1 0 1 N Y 0.0358744394618834 0.4054054054054049 38 1.53237222961669 1.27125050439053 1.53237222961669 1.27125050439053 4 - 52.2368421052632 0.985018076811252 HCT116-unstranded 0.0 71141 TGTTTGCTGCCAAATTCACATTATGAGCAAGTCATGACTGCATTTGGAGGCAAAGGGTATTTTGTACAAACACCAGAAGAACTCCAAAAATCCCTGAGGCAGAGCCTAGCAGACACAACTAAACCTTCTCTTATCAACATCATGATTGAGCCACAAGCCACACGGAAGGCCCAG|CCCTTCCCAGCCTGGATCAGAAGAAGCGTGGTGGCCACAAAGCATGCTGCCTGCTGACGCCTCCTCCACCACCACTGTTCCCACCACCATTCTTCAGAGGTGGCCGAAGTCCGGGTCCACCGGGGCTTCCTGGCAAGACAGGACCA 6 1.0 0.303499339844227 0.7216695263166321 Y Y 3.4120729950243103 3.63552422018169 3.4120729950243103 1 0.0 0.0 Y 0.0 N Y 890 99 ENSG00000131373 ENSG00000206561 + - 3 3 15643338 15563258 coding coding HACL1 COLQ 15602211 15491640 - - 0.0 15604865 15531144 - + N - - N SA464 1 0.0 1.0 1 0 1 N Y 0.0 0.0 5 0.955155784379909 0.97577065742408 0.97577065742408 0.955155784379909 4 - - 0.9602718005943058 HCT116-unstranded 0.0 83010 TCCTCCCAACTGGTGCAAGTGTGTGGAAGGCATGGATGCAGTCAATATTGAAAGAGATCACATTCTAGGAGTGTAGTGATTATAGCATGTTCCTGCATGCTCTGGGTGAGATTTGCATTTTTGTTCATCAACAATGAAGCTCAGTATCATTCTTTGAAAGATTCACTGGACACCACTCTTCAAGGGCAGCAAGAAAGATGATACA|AGATAACCACTGGACAGCTTAAGCCTCGTGATGACAGTCTTCTTTTGATGTGACAGGAATTACACCTGTTTGGATGAAATCCAAAACCCATATCATAGAAAAATTCACTA 21 0.8743824384935049 0.45024522437333 0.555455350410155 N Y 3.5010341561346 3.86207465464874 3.5010341561346 2 0.0 0.0 Y 0.0 N N 68 1256 ENSG00000258088 ENSG00000179941 - + 12 12 76092596 76742222 intron downstream RP11-114H23.2 BBS10 76087790 76738254 - - 0.0 76088755 76726584 + - N - - N SA464 1 0.6138613861386141 1.0 1 0 1 N N 0.6138613861386141 0.0 5 0.6940340591537472 0.474142080015926 0.6940340591537472 0.474142080015926 4 - - 0.9674529925106492 HCT116-unstranded 0.0 111033 ACCAAATGCAACGAGGGCCCAATCCTGGAGCTTGAAAATCTGCCGCAGAATGGCCGCCAGTGTTACAGCTGCAAGGGGAACAGCACCCATGGATGCTCCTCTGAAGAGACTTTCCTCATTGACTGCCGAGGCCCCATGAATCAATGTCTGGTAGCCACCGGCACTCAC|GGGGCAGGACAGGAAGTACAGACAGAGAACGTGACAGTGGCTGAGGGTGGGGTGGCTGAGATCACCTGCCGTCTGCACCAGTATGATGGGTCCATAGTTGTCATCCAGAACCCAGCCCGGCAGACCCTCTTCTTCAATGGCACCCGTGCCTTGAAGGATGAGCGTTTCCAGCTTGAGGAGTTCTCCCCACGCCGGGTGCGGAT 3 0.569101042212656 0.423435277458113 0.7960996929947659 Y Y 3.71041843152174 3.13077476750157 3.13077476750157 0 0.0 0.0 Y 0.0 N Y 2849 1377 ENSG00000011422 ENSG00000105767 + - 19 19 44174502 44143991 coding coding PLAUR CADM4 44150271 44126522 - - 0.0 44156377 44131942 - + N - - N SA464 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 5 0.790236800026543 1.07197339829688 1.07197339829688 0.790236800026543 4 - - 0.921508083114648 HCT116-unstranded 0.0 106012 ATCACCAGAGCTGTGATGTCCAAAATTCAGGTCTCTGAGCGGCCCCTGATGTTCCTGTTGGACACTCCTGGCGTGCTGGCTCCTCGGATTGAAAGTGTGGAGACAGGCCTGAAGCTGGCCCTGTGTGGAACGGTGCTGGACCACCTGGTCGGGGAGGAGACCATGGCTGACTACCTGCTGTACACCCTCAACAAACACCAGCGCTTTGGG|TGGACCAGGTGCTCTGAGGCTGGCGTACAGACACAGCACGTGCGACGGAGTGGTGTTGGTCCGACACCACGGGGCATGGGGATACGTGTGCAACCAGGAGTGGACGCTGGCAGAGGCCTCTGTCGTGTGCAGGCAGCTGGGCTGCGGCCCTGCCGTGGGCGCC 3 0.42883752076005294 0.87657348354964 0.129496013732092 Y Y 3.28193228719199 3.5231187328827502 3.28193228719199 1 0.0 0.0 Y 0.0 N Y 804 71 ENSG00000148824 ENSG00000214279 + - 10 10 135234811 135337062 coding coding MTG1 RP11-108K14.4 135207598 135267432 + + 0.0 135216277 135269741 + - N - - N SA464 1 0.0 1.0 1 0 1 N Y 0.0 0.0 8 1.29873700178275 0.9276692869876808 1.29873700178275 0.9276692869876808 4 - - 0.950003646058752 HCT116-unstranded 0.0 111118 ATGGCATTCACACAGGAGGAGTGGGAACAGCTGGACCTGGCCCAGAGGACACTGTACCGAGAGGTGACACTGGAGACCTGGGAGCATATTGTCTCCCTGGGGCTTTTCCTTTCCAAATCTGATGTGATCTCTCAGCTGGAGCAAGAAGAGGACCTGTGCAGGGCAGAGCAGGAGGCCCCCCGAG|GAACGAGGCCCAGCAAAAAGCAGAGACGGTACAGGGCCAGAAGGATCTGAGAGAGTGTGGCCAGCTTGAGCCCTCAGGAGTCGGCCAGAAGGATCTGAGAGAGTGTGGCCAGCTTGAGCCCCTCGGGAGTCAGCTCCTCCGTCCCCACTGGTAACGTCTTCACCCCTTCAACACGGTGTGAAGGGCCATGTCATGGTTGATCTTCAGTCCCTCAGACTACACCATCAGCCCCAT 8 0.00164719011607635 0.790111138649725 0.6362002262936851 Y Y 3.07717480442437 3.06316128781662 3.06316128781662 0 0.994578188232852 0.0 Y 0.994578188232852 N N 2389 625 ENSG00000198131 ENSG00000083842 + - 19 19 58775010 58807254 coding upstream ZNF544 ZNF8 58740070 58790317 + + 0.0 58758160 58788549 + - N - - N SA464 1 0.0 1.0 1 0 2 N Y 0.0 0.0 6 1.2300207583021798 0.831466546114885 1.2300207583021798 0.831466546114885 4 - - 0.949183669514369 HCT116-unstranded 0.0 90499 AGAAGCAGGAGGTTGATGAGGTGAGCCAAGCAGGCAGCCAGTCTCCAGAGGCTGAAGAAGTCAGGGAAGCGGATTCTGCCCTCAGAGCTCCCAGAGGCAGCCACCCTGCCAACAACACCTGGGCTTTAGCCTCCTGAGACTGATTTTGGACTTCTCATCTCCAGAATT|ATCTAGGAGAATACTAACCGTGAAGATGAAACAAGAATTGTCCATGTACCTTTTCCTGAGAAGCCACCAGCTGTGACTTTAAGCTCGCACTCTGATGTTCCCAGGATTTCTGTTCCTGCTTCATCGTCGCAATTCTATGCTCTAAA 5 0.842956813484118 0.469569805592846 0.329383687291447 N Y 3.4320914322326805 3.52720696927234 3.4320914322326805 0 0.0 0.0 Y 0.0 N N 5543 4140 ENSG00000151748 ENSG00000100503 - + 14 14 51135049 51297839 upstream intron SAV1 NIN 51098776 51186481 - - 0.0 51145202 51210085 + - N - 0.665525084529076 N SA464 1 1.0 1.0 1 0 1 N N 1.0 0.0 6 0.8039800487226569 0.88643954089934 0.88643954089934 0.8039800487226569 4 - 24.6666666666667 0.9660404407652008 HCT116-unstranded 0.0 230 CTGCAAGCCTCACTTCATTCACTGTAAAACCAATAGCAAACAACGGAAGAGACGGGCAGAGTTGAAGCAACAAAGAGAGGAGGAGGCAACATGGCAAGAGCAGGAAGCCCCTCGGAGAGACACTCCCACCGAAAGTTCTTGCGCAGTGGCCGCCATTGGCACCCTGGAAGGCAGCCCCCCAG|ATGAGCCCACCTCCCCCAAGAGGCCGAAGAGCATCTCTGAGCCACAGCACAGTGATGCGGAAGGGGACGCTGCCTCTCCCCTGCCCTCCGAGTGGACCTCAGTGAGGATCAGCCCTGGGGAGGAAGCAGCTGGACAGGATGTGCTGGCTGTGCGTGTCCTGGTCACCAGCGAAGACAGCAG 6 1.0 0.919195702387618 0.414274500259002 Y Y 3.25360004855864 3.34425662684812 3.25360004855864 0 0.0 0.0 Y 0.0 N N 4024 158 ENSG00000133816 ENSG00000133808 + - 11 11 12285334 12380691 coding upstream MICAL2 MICALCL 12115543 12297627 + + 0.0 12281444 12297533 + - N - - N SA464 1 0.0 1.0 1 0 1 N Y 0.0 0.0 12 1.18191938786579 1.31935187482692 1.31935187482692 1.18191938786579 4 - - 0.9779284817904572 HCT116-unstranded 0.0 97832 CATTGCAAAAATTGCTGAAATTGCGGCAGATATACTTATAGGTCTTGTCTTCAGCAAACGGCATTGCTGCTCAGATTCTGGAGAGAGGGCTCTGGCCCCATGAAGGGTGGATGGACTGAGAGGAAACGAGA|CTGGCCACAGCTAAAATCTGTTCCTTCCGGAGAAGCCTGTCCCTCTCGGCACCATGCGGCCGTGGGTCATCAGGTGACTTCTCAGCACCGAAGACGCAGGAGTACAGCACTCGGCAAAGGCCCGTGTCCTCAGTATTCGGGGCCCTCAAGGTGTGAATGAGGAAGGCGTGGACCATGGCTCCAGGGTGGG 6 1.0 0.5427356116127979 0.512341377867489 Y Y 3.20654356231198 3.78105657260285 3.20654356231198 2 0.992390119008108 0.0 Y 0.992390119008108 N Y 13436 1126 ENSG00000088888 ENSG00000125843 - + 20 20 3849280 3805949 utr5p coding MAVS AP5S1 3827487 3801178 + + 0.0 3835205 3802940 - + N - 0.645471803398751 N SA464 1 0.0 1.0 1 0 1 N Y 0.0 0.0 6 0.6459326887173481 0.845209794810998 0.845209794810998 0.6459326887173481 4 - 29.5 0.979801260837999 HCT116-unstranded 0.0 83314 GCCTGAAGTTGCCTGGCGAGCCGCCGCTGACGGCCAACACCGTGTGCTTGACGCTGTCCGGCCTGAGCAAGCGGCAGCTAGGCCTGTGCCTGCGCAACCCCGACGTGACGGCGTCCGCGCTTCAGGGTCTGCACATCGCGGTCCACGAGTGTCAGCACCAGCTGCGCGACCAGCGCTGGAACTGCTCCGCGCTTGAGGGCGGCGGCCGCCTGCCGCACCACAGCGCCATCCTCAAGCGCGG|ATCAAGTCTTCCATACCAGGGACCAGGCCAAAACCAGACTGCCACTGCCCCTACTTGGGCCCCACTGTCCCCAGAAAGCAGCTGCTGTGATCATGGGCAATATCTTTGGAAACCTTCTCAAGAGCCTGATTGGGAAGAAGGAGATGCGCATCCTGATGGTGGGCCTGGATGCCGCAGGAAAGACCACCATCCTATACAAGCTGAA 14 0.7930779662423341 0.46744952848401 0.807913866582198 N Y 3.2044146420399 3.45976132345673 3.2044146420399 2 0.9951328640803192 0.0 Y 0.0 N Y 1113 15532 ENSG00000169884 ENSG00000134287 + - 12 12 49365546 49351334 coding utr5p WNT10B ARF3 49359123 49297286 - - 0.0 49363872 49334971 - + N - - N SA464 1 0.0 1.0 1 0 1 N N 0.0 0.0 13 1.6491898435336598 1.39493974265555 1.6491898435336598 1.39493974265555 4 - - 0.9615265219679108 HCT116-unstranded 0.0 111261 CTTGGCAGCAAACATGCAGAGGATGCCGGTGCCCGAGCCGACGTCCAGCACCACCTTGTCCTTGAAGAGGTGCCGGTTATGAAACATGGAGTTGCGGTAAGTGAGGGTGCGCACCTCGTCCTTCAGCATCTCCTCGTGGATGCCAAAGTGTGCGTAGGAGTCAAAGTAGTAATCTTTGGATGTCATGTCCTCAGCGTTGGGCTTCTCACTGCTTTCCGCCTGGCCACAGGACACC|CAGCCCCCGTGGGCCTGGATCCAGGGCGTGAAGCTGTGCACGTGCTCCACGCTGAGTCCGGCCAGGGTGCCCCCCAGCCCGGCCACGCGCCGGCTCAGCTCCATGGCTAGGGCCAGGCGGGCCAGGGGCTCCGGGGAAGGAGGCGGGGGCCCGGGGCATGCTCGGCTTGGGCGAGAGCTGTCATCCCG 2 0.771673978542658 0.6398704386731179 0.891388827967331 Y Y 3.4084792721746804 3.30128837699106 3.30128837699106 3 0.0 0.00235849056603765 Y 0.0 N Y 30525 2831 ENSG00000126457 ENSG00000126453 - + 19 19 50192286 50177172 coding coding PRMT1 BCL2L12 50179043 50168399 + + 0.0 50183744 50173745 - + N - 0.92386793998592 N SA464 2 0.0 1.09090909090909 1 1 1 Y Y 0.0 0.0 11 1.40181136700361 1.3124802504788702 1.40181136700361 1.3124802504788702 4 - 54.4545454545455 0.944368930250018 HCT116-unstranded 0.0 24019 CATCTCCCCACCACTGGCCGGGTTGCTCCTGGACGCCACCAACAACTTTAGCTATGTTTTCTACATGTCCAGCTTCTTCCTCATCTCAGCTGCCCTCTTCATGGGTGGCAGCTTCTACGCCCTGCAGAAGAAGGAGCAAGGCAAGCAGGCTGTCGCGGCGGATGCCCTGGAGCGGGATCTTTTCTTGGAAGCCAAAGACGGTCCTGGGAAGCAACGGTCCCCTGAGATCAT|ATTTTGCAGTAATTTGCATCTGGACATGGGATACGGGAGGCCAGGCTGCTCCTCGCAGTACACCCACCCACGCCTGCACCTGCCTCAGCGAAGCCGCTCGCCGCTGGTTCCAGCACAGGCTAAAGAGCTTCGGCATCCAGAAAACCAGAAGCGCGCCGCGCACGCGCGCCAAGGAGTTCGGCGACGGCCCCGCCCCTTCG 15 1.0 0.904646912249395 0.0208002836746747 Y Y 3.55128313764676 3.46448140203209 3.46448140203209 0 0.0 0.0 Y 0.0 N N 3509 3697 ENSG00000170190 ENSG00000125449 + - 17 17 73102257 73126360 coding upstream SLC16A5 ARMC7 73083822 73106047 + + 0.0 73100275 73105830 + - N - - N SA464 1 0.0 1.0 1 0 1 N Y 0.0 0.0 17 1.53924385396475 1.39493974265555 1.53924385396475 1.39493974265555 4 - - 0.969264144155656 HCT116-unstranded 0.0 98516 CTAGTCTTGATCAGCTTAAGGGTTTAGCGCTGGTGGATAGACACTCGAGACCAGAAATCATATTTTTGCTGAAAGTAGATGATTTACCTGAGGATAATCAGGAACGTTTTAATAGCCTTTTCTCTCTAAGGGAGAAGTGGACAGAAGAAGATATTGCTCCATATATTCA|GAAGCCGGGAAGCCAAGCTCCGCGGGACCGCTTCATGCCGCTGACTGGTGTAGAGCCCGCCAGAATGAACAGGAAGAAAGGAGACAAGGGCTTTGAAAGCCCAAGGCCATATAAATTAACCCATCAGGTCGTCTGCATCAACAACATAAATTTCC 5 1.0 0.708362303268923 0.450795814474558 Y N 3.5859375860788303 3.45041445226185 3.45041445226185 0 0.0 0.0 Y 0.0 N N 3482 8068 ENSG00000136982 ENSG00000064313 + - 8 8 120868250 120845103 coding utr5p DSCC1 TAF2 120846216 120743015 - - 0.0 120850499 120844838 - + N - - N SA464 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 12 1.17504776351773 0.982642281772136 1.17504776351773 0.982642281772136 4 - - 0.977387645795567 HCT116-unstranded 0.0 252 GTGCGTGGCGAGCAGGTCACGTGACGGGAGCGCGGGCTTTGGAAGGCGGCTGAACGTCAGGCCACCCGCCGCTAAGCTGAGAAGGGAGAGCGAGCTTAGGACCGCCTGCCCGGGGCAACCCCGAACCAAGCTTTAGCCGCCGAGGCCGCGTGTCCCAAAGGCCAG|GATGCCTTCCGCGCCTTCCACCCTGACCTGGAATTCGTGGGCAAGTTCTTGAAACCCCTGCTGATTGGTGAACTGGCCCCGGAGGAGCCCAGCCAGGACCACGGCAAGAACTCAAAGATCACTGAGGACTTCCGGGCCCTGAGGAAGACGGCTGAGGACATGAACCTGTTCAAGACCAACCACGTGTTCTTCCTCCTCCTCCT 1 0.300571383126688 0.354738758645825 0.403465635881492 Y Y 3.30488209984069 3.57848902055439 3.30488209984069 0 0.993955818346062 0.0 Y 0.0 N Y 13644 1834 ENSG00000168496 ENSG00000134824 + - 11 11 61564716 61634826 utr5p coding FEN1 FADS2 61560109 61560452 + + 0.0 61560500 61605250 + - N - - N SA464 1 0.0 1.0 1 0 1 N Y 0.0 0.0 5 0.570344820888723 0.755878678286259 0.755878678286259 0.570344820888723 4 - - 0.917878644706808 HCT116-unstranded 0.0 110928 GGCCTCCCCAGTGTGGAAAAGGAAGAGGTGGAGGGCCGGCCCCCCATCGGGGTCAAGTTTGAGATCCCCTACTTCACCGTCTCTGGGATCCAGGTCCGATACATGAAGATCATTGAGAAAAGTGGTTACCAGGCCCTGCCCTGGGTTCGCTACATCACCCAGAGTGGC|GGCCGCCAGTGTCGACATGCTGCTGGAGGAGGTTCGCGCCGGCGACCGGCTGAGTGGGGCGGCGGCCCGGGGCGACGTGCAGGAGGTGCGCCGCCTTCTGCACCGGGAGCTGGTGCATCCCGACGCCCTCAACCGCTTCGGCAAGACGGCGCTGCAGGTCATGATGTTTGGCAGCACCGCCATCGCCCTGGAGCTGCTGAAGCAAGGTGCCAGCCC 4 0.986215104387465 0.7993244285273491 0.216136474375231 Y Y 3.48639814491089 3.63080414160633 3.48639814491089 0 0.0 0.0025974025974026 Y 0.0025974025974026 N Y 4567 431 ENSG00000129354 ENSG00000129355 + - 19 19 10697991 10679735 coding utr5p AP1M2 CDKN2D 10683347 10677138 - - 0.0 10685093 10679344 - + N - - N SA464 1 0.0 1.0 1 0 1 N Y 0.0 0.0 5 1.3468383722191497 1.16817613916967 1.3468383722191497 1.16817613916967 4 - - 0.9687433919740892 HCT116-unstranded 0.0 62719 CGACGCCGCGCTGGCCGCGCTCCAGGATCTCTCCGGCACCGGGACCGATGCAGGGGCCACGGGGAGCGGTGGTGTCCAGGGCCCGGTCGGAAGTCAGCAAGTCCAGCTTCAGCGCGTTTCCCTCGAGGCGCCCTTGAGC|TAGAGCCTTCACGGATATCTGCCGGGTGAGTGGAGGGGGGATGCTGATGCACACCAGATCCACATCTTGATGCAGCAAGATGTCATCAGTCCGGCTGGTGTAGAAGGCGATGTTCATCTCCTCAGCAAGCTGCTTCGCCTCCTCCTCAGTCTTCCCCCACAGGGC 4 0.961894591943021 0.5974978344985109 0.141268700519969 N Y 3.25360004855864 3.53871326596283 3.25360004855864 1 0.9928293430829108 0.0 Y 0.8709281754923929 N Y 443 1198 ENSG00000124074 ENSG00000141098 - + 16 16 67700667 67753324 intron coding C16orf48 GFOD2 67696848 67708436 - - 0.0 67700168 67719360 + - N 3.7331732753123 1.17329894961132 N SA464 1 0.0 1.0 1 0 1 Y N 0.0 0.0 5 0.9345409113357378 0.893311165247397 0.9345409113357378 0.893311165247397 4 13.6 34.2 0.978292294376884 HCT116-unstranded CGHSA0486 0.0 40961 AGGAGCTGCTGACCCGGGAGCTGCCCAGCTTCTTGGGGAAAAGGACAGATGAAGCTGCTTTCCAGAAGCTGATGAGCAACTTGGACAGCAACAGGGACAACGAGGTGGACTTCCAAGAGTACTGTGTCTTCCTGTCCTGCATCGCCATGATGT|GGACAGAGATCAGGGAAATAAAGGCAGAAGGCAGTGAGAGGGAGGCTATGCCTGCTGCTTGGATTCTCTGGGCTCACTCCCACAGTGAGCTGCACACTGTGATGGAGACTCCTCTGGAGAAGGCCCTGACCACTATGGTGACCACGTTTCACAAATATTCGGGGAGAGAGGGTAGCAAA 10 0.8715312957145509 0.779523339150045 0.483356800189529 Y Y 3.66016945000958 3.00868674126906 3.00868674126906 0 0.0 0.0 Y 0.0 N N 5119 69 ENSG00000196154 ENSG00000196420 + - 1 1 153522612 153514241 coding utr5p S100A4 S100A5 153516089 153509623 - - 0.0 153516285 153513947 - + N - - N SA464 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 19 1.05135852525271 1.0925882713410502 1.0925882713410502 1.05135852525271 4 - - 0.950943350383076 HCT116-unstranded 0.0 114473 GGAGGACAAGAACGAGTGGAAGAACTGCATTGACATCACGGGAGTGCGCCTGCCCACCGGCTACTACTTCGGGGCCTCCGCCGGCACCGGCGACCTGTCTGACAATCATGACATCATCTCCATGAAGCTGTTCCAGCTGATGGTGGAGCACACGCCCGACGAGGAGAGCATCGACTGGACCAAGATCGAGCCCAGCGTCAACTTCCTCAAGTCGCCCAAAG|AGGCCGAGCATGGTTATGCGTCCCTGTGCCCGCATCGCAGTCCAGGCCCCATCCACAGGAGGAAGAAGCGACCCCCCCAGGCTCCTGGCGCGCAGGACAGCGGGCGGTCAGTGCACAATGAACTGGAGAAGCGCAGGAGGGCCCAGTTGAAGCGGTGCCTGGAGCGGCTGAAGCAGCAGATGCCCCTG 5 0.577113947645725 0.439491448951428 0.183823887581435 Y Y 3.3536034980430003 3.49424793801946 3.3536034980430003 0 0.99469382459782 0.0 Y 0.99469382459782 N Y 9076 1860 ENSG00000169223 ENSG00000213347 + - 5 5 176778853 176739758 coding coding LMAN2 MXD3 176758563 176728462 - - 0.0 176761285 176738485 - + N - - N SA464 1 0.0297619047619048 1.0 1 0 1 Y Y 0.0 0.0297619047619048 6 1.1956626365619 0.8039800487226569 1.1956626365619 0.8039800487226569 4 - - 0.943883539220442 HCT116-unstranded CGHSA0638 0.0 16568 AGAAGACCGTTCTGGTGGGCCGCCGGGCGGTGCTGGAGGTGACTGTGTCCCGCTCGGGGGGCCACGTGTGCTGGCTGCGGGAGGGGGCCGAGCTGTGCCCGGGAGATAAGTATGAGATGCGCAGCCACGGCCCCACCCACAGCCTGGTCATCCATGACGTTCGACCTGAGGACCAAGGCACTTACTGCTGCCAGGCCGGCCAGGACAGCACCCACACACGGCTGCTGGTAG|AGGGACCCGCTACATCAGCACGGAGCTGGGCATCAGGCAGAGGCTGCTGGTGGCGGTGCTGACCTCTCAGACCACGCTGCCCACGCTGGGCGTGGCCGTGAACCGCACGCTGGGGCACCGGCTGGAGCGTGTGGTGTTCCTGACGGGCGCACGGGGCCGCCGGGCCCCACCTGGCATGGCAGTGGTGACGCTAGGCGAGGAGCGACCCA 22 0.9587978899852952 0.6086888873351529 0.54263298748521 Y Y 3.2720510496638 3.30232144676095 3.2720510496638 4 0.995226160639694 0.0 Y 0.0 N Y 305 51700 ENSG00000124006 ENSG00000123989 + - 2 2 220436581 220408509 coding utr5p OBSL1 CHPF 220415451 220403669 - - 0.0 220416251 220406911 - + N - - N SA464 1 0.0 1.0 1 0 1 N Y 0.0 0.0 27 1.60108847309726 1.4636559861361202 1.60108847309726 1.4636559861361202 4 - - 0.960295943470935 HCT116-unstranded 0.0 95497 GCCGGAGGAACGGGAGCTGCAGGAGGTGGAGAGCACCCTGAAACGACAGAAACAAGCAATCCGATTCCAGAAAATTCGGAGGCAAATGGAGGCGCCTGGTGCCCCGCCCAGGACCCTGACGTGGGAAGCCATGGAGCAGATACG|ATACTTGTCTTCCTAAGAGTGATTGGAGGTCTCCTTGCCTTGGCTGCTGTGTTCCAGATCATCTCCCTGGTAATTTACCCCGTGAAGTACACTCAACCTTCAACCTTCATGCCAAGCCCCGCTGTCACTTCCATCTATAACTGGGCCTGCGGCTTTGGGTGGGCAGCCATGATTATCC 9 0.9056729861650148 0.9120132798186592 0.903993269184934 Y Y 3.47129812537077 3.63080414160633 3.47129812537077 0 0.9930770553835572 0.0 Y 0.0 N N 5677 442 ENSG00000182768 ENSG00000228998 + - 15 15 90816463 90820841 coding intron NGRN RP11-697E2.7 90808891 90818266 + + 0.0 90809630 90818679 + - N - - N SA464 2 0.0 1.25 1 2 1 N Y 0.0 0.0 8 0.962027408727966 0.962027408727966 0.962027408727966 0.962027408727966 4 - - 0.9000799534682881 HCT116-unstranded 0.0 101256 GAGCAATGGAGGCCACGGCCGACTGAGAGGCGGGTGCGCTGCTGGTGCTGCTGCCGCGGCGGCTGCTGATGCGGAGGCTGCCGCGCGCAGTGCCGCCGAGTCCGCCGCCCGCCCGGGACCGCCGGTCGCCGGCCAGCCGCTCTGCCAGCCGGAGCGCCAGGCGGGGACCTCAG|CTTACAAGAGCAGTGATTCCCAGGCTTTCTCAGCAATGTACCCCATTTCCTGACATTTACAGCTGAAGGTGAAGTTTCCCTTTTGCAAGGAGAAAATTTTGGTGGAGAATTATCCAACAAGAAAAAGACCTGTGGCTATTAA 12 0.511199102212768 0.528742140823916 0.535833424389785 N Y 3.21075977977757 3.62361669590707 3.21075977977757 2 0.992980032091282 0.0 Y 0.0 N N 837 1017 ENSG00000174799 ENSG00000109265 + - 4 4 56899270 57194791 downstream utr5p CEP135 KIAA1211 56815037 57036361 + + 0.0 56915465 57045450 + - N - 0.0371384930002399 N SA464 1 0.283132530120482 1.0 1 0 1 N N 0.283132530120482 0.0 10 1.14068964177745 1.00325715481631 1.14068964177745 1.00325715481631 4 - 0 0.9404161707568072 HCT116-unstranded 0.0 76032 GAAACATTTTCTCAACACACATTCCTCATGAATGGTCTCATTCAAGGTGTAAAGGGCCTGCTCTCTTTTTTGAGTGCCCCACTCATTGGTGCCCTGTCTGATGTGTGGGGGAGGAAGCCCTTTCTCCTCGGCACTGTATTCTTTACCTGCTTCCCAATCCCACTGATGAGGATCAGCCCATG|TTTTTTAAAAAAGAAAACACATCAGTGGACGTGAATGCAGGATGTCTTATGAATGCTCACACAGAAGCTCCCATTCGTGAGGAATGCAGGGAAAAGCAGAAGATGGAGTAGGAGTTGGCATGGCCCAGCTAGCTCAGATGACACAC 9 1.0 0.609771792136963 0.7261710452722901 Y Y 3.48743121468078 3.29280674169672 3.29280674169672 6 0.9931715035183408 0.00303951367781141 Y 0.9931715035183408 N N 260 53 ENSG00000196312 ENSG00000249044 + - 9 9 99775862 99711867 coding intron HIATL2 RP11-330M2.7 99711033 99660348 - - 0.0 99711837 99705436 - + N - 2.86861801945601 N SA464 4 0.0 4.0 4 5 2 N Y 0.0 0.0 5 0.8177232974187709 0.8039800487226569 0.8177232974187709 0.8039800487226569 4 - 1.8 0.9107977742659592 HCT116-unstranded 0.0 70853 TCAAGTGTTATTTCCAATTTTGTCAGTTACGTGGGTAAAGTTGCCACAGGAAGATATGGACCATCACTTGGTGCAGCCCTGAAAGCCATTATCGCCATGGATACAGCAGGAATGATCCTGGGATGGAAATTTTTTGATCATGCGGCACATCTTGGGGGAGCTCTTTTTGGAAT|GATCTCCCTCTACACCTGGCGCCTCGCCTGCTGCCTGCTGGGACATGGCCTGGCCTGCTCAGCTGACCTGCTGCCACTTCTAGGCAGCCGTCATGTCACTTTGCTACAACTTCAAGCTAAGACAGGCAATGTTTTGGGAGATGAATCTGTTTTCTGACTGGCCAGGGATGTGCTGCAGTCCCCTCCCAGGCGCAGACTG 8 0.94745582461 0.8440379941166759 0.0677431772953682 Y Y 3.31319590126568 3.11761290642523 3.11761290642523 0 0.0 0.0 Y 0.0 N N 2714 1130 ENSG00000175193 ENSG00000180834 + - 3 3 183602721 183543382 coding upstream PARL MAP6D1 183547173 183533664 - - 0.0 183551280 183544520 - + N - - N SA464 1 0.0 1.0 1 0 1 N Y 0.0 0.0 12 1.08571664699299 1.2300207583021798 1.2300207583021798 1.08571664699299 4 - - 0.954263188292997 HCT116-unstranded 0.0 40955 CCACTCCCTTCATGAGGAGGAGAACAACATCTTTAAGCGGTCAAGGAAGAAGGAGCGACAGATATTGCCTGTGCTGCAAGTGCAGCTTCTTGCGGCTGGACTCCTTGCCACCAAACCAGGAGGCCATGTTGTCTATTCTACCTGCTCACTCTCACACTTACAGAACGAGTATGTGGTGCAAGGTGCCATTGAGCTCCTGGCCAATCAATACAGCATCCAG|AACCCAGACCTGGACTCAGAGGCGCTGCTAGCCCTGCCCCTGCCTCAGCTGGTGCAGAAGTTACACAGTAGAGAGCTGGCCCCTGAGGCCGTGCTCTTCACCTATGTGGGAAAGGCCTGGGAAGTGAACAAAGGGACCAACTGTGTGACCTCCTATCTGGCT 4 0.898383189802982 0.493691686176757 0.204220132823878 N Y 3.66951632120446 3.31233066536513 3.31233066536513 0 0.993843277568256 0.0 Y 0.901492441092093 N N 2732 799 ENSG00000117481 ENSG00000117480 + - 1 1 46830824 46879520 coding coding NSUN4 FAAH 46805849 46859937 + + 0.0 46827368 46867763 + - N - - N SA464 1 0.0 1.0 1 0 1 Y N 0.0 0.0 7 1.36058162091527 1.13381801742939 1.36058162091527 1.13381801742939 4 - - 0.9728758670464828 HCT116-unstranded CGHSA0337 0.0 43589 GTGCTCACCCTCCTCTGCAGCCTGGTGCCCATCTGTGTGCTGCGCCGGCCAGGAGCTAACCATGAAGGCTCAGCTTCCCGCCAGAAAGCCCTGAGCCTAGTAAGCTGTTTCGCGGGGGGCGTCTTTTTGGCCACTTGTCTCCTGGACCTGCTGCCTGACTACCTGGCTGCCATAGATGAGGCCCTGGCAGCCTTGCACGTGAC|GTTACAGGCCCAAAAACTGCGACTGGCATACACAAGGAGCTCTCATTATGGTGGGTCTCTGCCCAATGTTAACCAGATTGGCTCTGGCCTGGCCGAGTTCCAGAGCCCCCTCCACTCACCTTTGGATTCATCTCGGAGCACTCGGCACCATGGGCTGGTGGAACGGGTGCAGCGAGATCCTCGAAGAATGGTGTCCCCACTTCGCCGATACACCCG 16 0.968408964065376 0.979989601349562 0.0924301643828738 Y Y 3.5204207511572005 3.50744965188915 3.50744965188915 1 0.9950856204550792 0.0 Y 0.503647665962937 N Y 5155 2435 ENSG00000143570 ENSG00000160741 + - 1 1 153940188 153931101 coding intron SLC39A1 CRTC2 153931575 153920145 - - 0.0 153934696 153927642 - + N - - N SA465 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 13 1.23177332996572 1.16083350467974 1.23177332996572 1.16083350467974 4 - - 0.988196262496714 HCT116-unstranded CGHSA0331 0.05 129156 ACCTGCGCGGCGGACCCGGAGCCGCCCCGGGGGGCGCCTCGCCCGCCTCCTCCTCCTCAGCCGCCTCGTCCCCGTCCTCGGGCCGCGCCCCCGGCGCCGCGCCCTCCGCCGCCGCCAAGAGCCACCGCTGTCCCTTCCCGGACTGCGCCAAAGCCTACTACAAGTCCTCGCACCTAAAGTCGCACCTGCGGACGCACACAGGG|CTGGGTTACGACCCCTACAACCCTGAGCTGCCCAAGCCCCCCGCGCAGAGGGAGAATGGCACCCTGGGCCTGGGGGAGGAGCCGCGCCCGGATGTGCTGGAGTTGGAGCTGGTCAACCAGGCCATCGAGGCCGTGCGCAGTGAGGTGGAGCTGGAGCAGCGGCGCTACCGGGAGCTGCTGGAGACGACCCGTG 20 1.0 0.37950058856875896 0.324642690978117 Y Y 3.48912663185998 3.29959295981186 3.29959295981186 0 0.0 0.0 Y 0.0 N Y 8248 6450 ENSG00000129911 ENSG00000079313 + - 19 19 1863567 1848452 coding coding KLF16 REXO1 1852399 1815248 - - 0.0 1863040 1828630 - + N - 8.20337393943453 N SA465 1 0.36764705882352894 1.0 1 0 1 Y Y 0.36764705882352894 0.0 23 1.31561130530371 1.19307887980973 1.31561130530371 1.19307887980973 4 - 6.60869565217391 0.979072792537435 HCT116-unstranded 0.05 79920 GAAATGTTAAAATTTCAAGATGCTACTGCAGTGGTCCCTCCAATGTGTTTGCTGCCAAATTCACATTATGAGCAAGTCATGACTGCATTTGGAGGCAAAGGGTATTTTGTACAAACACCAGAAGAACTCCAAAAATCCCTGAGGCAGAGCCTAGCAGACACAACTAAACCTTCTCTTATCAACATCATGATTGAGCCACAAGCCACACGGAAGGCCC|AGCCCTTCCCAGCCTGGATCAGAAGAAGCGTGGTGGCCACAAAGCATGCTGCCTGCTGACGCCTCCTCCACCACCACTGTTCCCACCACCATTCTTCAGAGGTGGCCGAAGTCCGGTGAGTACTTTGGGATTTATGAGAGGAAAAAAAGTGCAGGCTAC 4 0.768712333640715 0.7733004319040591 0.7298749769917421 Y Y 3.4722913423473 3.61360747730288 3.4722913423473 0 0.0 0.0 Y 0.0 N Y 804 135 ENSG00000131373 ENSG00000206561 + - 3 3 15643338 15563258 coding intron HACL1 COLQ 15602211 15491640 - - 0.0 15604865 15531144 - + N - 5.06522587506754 N SA465 1 0.0 1.0 1 0 1 N Y 0.0 0.0 6 1.07054645431576 0.8125834532758179 1.07054645431576 0.8125834532758179 4 - 0 0.977603271899034 HCT116-unstranded 0.05 129123 ATCTGTGTGCTTCGAGGATGTGGCTATGGCATTCACACAGGAGGAGTGGGAACAGCTGGACCTGGCCCAGAGGACACTGTACCGAGAGGTGACACTGGAGACCTGGGAGCATATTGTCTCCCTGGGGCTTTTCCTTTCCAAATCTGATGTGATCTCTCAGCTGGAGCAAGAAGAGGACCTGTGCAGGGCAGAGCAGGAGGCCCCCCGAG|GAACGAGGCCCAGCAAAAAGCAGAGACGGTACAGGGCCAGAAGGATCTGAGAGAGTGTGGCCAGCTTGAGCCCTCAGGAGTCGGCCAGAAGGATCTGAGAGAGTGTGGCCAGCTTGAGCCCCTCGGGAGTCAGCTCCTCCGTCCCCACTGGTAACGTCTTCACCCCTTCAACACGGTGTGAAGGGCCATGTCATGGTTGATCTTCAGTCCCTCAGACTACACCATCAG 11 0.0207729730874215 0.975793083472315 0.563927303174969 Y Y 3.07717480442437 3.06316128781662 3.06316128781662 0 0.995226234952262 0.0 Y 0.995226234952262 N N 2175 744 ENSG00000198131 ENSG00000083842 + - 19 19 58775010 58807254 coding upstream ZNF544 ZNF8 58740070 58790317 + + 0.0 58758160 58788549 + - N - - N SA465 1 0.0 1.0 1 0 2 N Y 0.0 0.0 10 1.14148627960174 1.37365298053769 1.37365298053769 1.14148627960174 4 - - 0.958964672370996 HCT116-unstranded 0.05 102776 GGATAGAAGCAGGAGGTTGATGAGGTGAGCCAAGCAGGCAGCCAGTCTCCAGAGGCTGAAGAAGTCAGGGAAGCGGATTCTGCCCTCAGAGCTCCCAGAGGCAGCCACCCTGCCAACAACACCTGGGCTTTAGCCTCCTGAGACTGATTTTGGACTTCTCATCTCCAGAATT|ATCTAGGAGAATACTAACCGTGAAGATGAAACAAGAATTGTCCATGTACCTTTTCCTGAGAAGCCACCAGCTGTGACTTTAAGCTCGCACTCTGATGTTCCCAGGATTTCTGTTCCTGCTTCATCGTCGCAATT 10 0.807619956742619 0.541527939780832 0.688332565981177 N Y 3.4320914322326805 3.52720696927234 3.4320914322326805 0 0.0 0.0 Y 0.0 N N 4704 3130 ENSG00000151748 ENSG00000100503 - + 14 14 51135049 51297839 upstream intron SAV1 NIN 51098776 51186481 - - 0.0 51145202 51210085 + - N - 0.625851860032136 N SA465 1 1.0 1.0 1 0 1 N N 1.0 0.0 8 0.9351158787697909 0.735194552963835 0.9351158787697909 0.735194552963835 4 - 16 0.986398184909741 HCT116-unstranded 0.05 452 TTCATTCACTGTAAAACCAATAGCAAACAACGGAAGAGACGGGCAGAGTTGAAGCAACAAAGAGAGGAGGAGGCAACATGGCAAGAGCAGGAAGCCCCTCGGAGAGACACTCCCACCGAAAGTTCTTGCGCAGTGGCCGCCATTGGCACCCTGGAAGGCAGCCCCCCAG|ATGAGCCCACCTCCCCCAAGAGGCCGAAGAGCATCTCTGAGCCACAGCACAGTGATGCGGAAGGGGACGCTGCCTCTCCCCTGCCCTCCGAGTGGACCTCAGTGAGGATCAGCCCTGGGGAGGAAGCAGCTGGACAGGATGTGCTGGCTGTGCGTGTCCTGGTCA 3 0.932438229462718 0.403492341289408 0.69896805680565 Y Y 3.25360004855864 3.34425662684812 3.25360004855864 0 0.0 0.0 Y 0.0 N N 4582 176 ENSG00000133816 ENSG00000133808 + - 11 11 12285334 12380691 coding upstream MICAL2 MICALCL 12115543 12297627 + + 0.0 12281444 12297533 + - N - - N SA465 1 0.0 1.0 1 0 1 N Y 0.0 0.0 8 0.960912178873785 0.9351158787697909 0.960912178873785 0.9351158787697909 4 - - 0.985353342058368 HCT116-unstranded 0.05 111601 GTTACGGAGGCAGTGACCACCCACCCTGGAGCCATGGTCCACGCCTTCCTCATTCACACCTTGAGGGCCCCGAATACTGAGGACACGGGCCTTTGCCGAGTGCTGTACTCCTGCGTCTTCGGTGCTGAGAAGTCACCTGATGACCCACGGCCGCATGGTGCCGAGAGGGACAGGCTTCTCCGGAAGGAACAGATTTTAGCTGTGGCCAG|TCTCGTTTCCTCTCAGTCCATCCACCCTTCATGGGGCCAGAGCCCTCTCTCCAGAATCTGAGCAGCAATGCCGTTTGCTGAAGACAAGACCTATAAGTATATCTGCCGCAATTTCAGCAATTTTTGCAATGTGGATGTTG 14 0.75860456079525 0.8934505838857479 0.761815669657647 Y Y 3.78105657260285 3.20654356231198 3.20654356231198 0 0.992877551020408 0.0 Y 0.9715102040816328 N Y 1457 15025 ENSG00000125843 ENSG00000088888 + - 20 20 3805949 3849280 coding utr5p AP5S1 MAVS 3801178 3827487 + + 0.0 3802940 3835205 + - N - 0.231824247098651 N SA465 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 12 1.29626408022571 0.922217728717793 1.29626408022571 0.922217728717793 4 - 19.3333333333333 0.981210200790756 HCT116-unstranded 0.05 94209 CACCGTGTGCTTGACGCTGTCCGGCCTGAGCAAGCGGCAGCTAGGCCTGTGCCTGCGCAACCCCGACGTGACGGCGTCCGCGCTTCAGGGTCTGCACATCGCGGTCCACGAGTGTCAGCACCAGCTGCGCGACCAGCGCTGGAACTGCTCCGCGCTTGAGGGCGGCGGCCGCCTGCCGCACCACAGCGCCATCCTCAAGCGCGG|ATCAAGTCTTCCATACCAGGGACCAGGCCAAAACCAGACTGCCACTGCCCCTACTTGGGCCCCACTGTCCCCAGAAAGCAGCTGCTGTGATCATGGGCAATATCTTTGGAAACCTTCTCAAGAGCCTGATTGGGAAGAAGGAGATGCGCATCCTGATGGTGGGCCTGGATGCCGCAGGAAAGACCACCATCCTATACAAGCTGAAACTCGGG 10 0.814909048854852 0.932633220940756 0.775522803947768 N Y 3.2044146420399 3.45976132345673 3.2044146420399 2 0.9951097945173272 0.00239808153477228 Y 0.00239808153477228 N Y 1266 17104 ENSG00000169884 ENSG00000134287 + - 12 12 49365546 49351334 coding utr5p WNT10B ARF3 49359123 49297286 - - 0.0 49363872 49334971 - + N - - N SA465 1 0.0 1.0 1 0 1 N N 0.0 0.0 6 1.24467148001772 1.10279182944575 1.24467148001772 1.10279182944575 4 - - 0.984926652970604 HCT116-unstranded 0.05 26719 GCCACCAACAACTTTAGCTATGTTTTCTACATGTCCAGCTTCTTCCTCATCTCAGCTGCCCTCTTCATGGGTGGCAGCTTCTACGCCCTGCAGAAGAAGGAGCAAGGCAAGCAGGCTGTCGCGGCGGATGCCCTGGAGCGGGATCTTTTCTTGGAAGCCAAAGACGGTCCTGGGAAGCAACGGTCCCCTGAGATCAT|ATTTTGCAGTAATTTGCATCTGGACATGGGATACGGGAGGCCAGGCTGCTCCTCGCAGTACACCCACCCACGCCTGCACCTGCCTCAGCGAAGCCGCTCGCCGCTGGTTCCAGCACAGGCTAAAGAGCTTCGGCATCCAGAAAACCAGAAGCGCGCCGCGCACGCGCGCCAAGGAGTTCGGCGACGGCCCCGCCCCTTCGGGGGTAGGGACAGCGCGGCTT 19 0.7690599513114351 0.312927605748769 0.278013562104972 Y Y 3.55128313764676 3.46448140203209 3.46448140203209 0 0.0 0.0 Y 0.0 N N 3865 3884 ENSG00000170190 ENSG00000125449 + - 17 17 73102257 73126360 coding upstream SLC16A5 ARMC7 73083822 73106047 + + 0.0 73100275 73105830 + - N - - N SA465 1 0.0 1.0 1 0 1 N Y 0.0 0.0 20 1.23177332996572 1.43814373079768 1.43814373079768 1.23177332996572 4 - - 0.93845772355599 HCT116-unstranded 0.05 43324 AGCTCAACAAGTCAGAACTAAAGGAGCTGCTGACCCGGGAGCTGCCCAGCTTCTTGGGGAAAAGGACAGATGAAGCTGCTTTCCAGAAGCTGATGAGCAACTTGGACAGCAACAGGGACAACGAGGTGGACTTCCAAGAGTACTGTGTCTTCCTGTCCTGCATCGCCATGATGT|GGACAGAGATCAGGGAAATAAAGGCAGAAGGCAGTGAGAGGGAGGCTATGCCTGCTGCTTGGATTCTCTGGGCTCACTCCCACAGTGAGCTGCACACTGTGATGGAGACTCCTCTGGAGAAGGCCCTGACCACTATGGTGACCACGTTTCACAAATATTCGGGGAGAGAGGGTAGCAAACTGACCCTGAGTAGGAAGGAACTCAAG 17 0.942069563317652 0.903026193684148 0.610947431347048 Y Y 3.66016945000958 3.00868674126906 3.00868674126906 0 0.0 0.0 Y 0.0 N N 5745 74 ENSG00000196154 ENSG00000196420 + - 1 1 153522612 153514241 coding utr5p S100A4 S100A5 153516089 153509623 - - 0.0 153516285 153513947 - + N - - N SA465 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 13 1.12858812954975 1.19307887980973 1.19307887980973 1.12858812954975 4 - - 0.9847356863199008 HCT116-unstranded 0.05 18852 GGGCGGTGCTGGAGGTGACTGTGTCCCGCTCGGGGGGCCACGTGTGCTGGCTGCGGGAGGGGGCCGAGCTGTGCCCGGGAGATAAGTATGAGATGCGCAGCCACGGCCCCACCCACAGCCTGGTCATCCATGACGTTCGACCTGAGGACCAAGGCACTTACTGCTGCCAGGCCGGCCAGGACAGCACCCACACACGGCTGCTGGTAGAG|GGACCCGCTACATCAGCACGGAGCTGGGCATCAGGCAGAGGCTGCTGGTGGCGGTGCTGACCTCTCAGACCACGCTGCCCACGCTGGGCGTGGCCGTGAACCGCACGCTGGGGCACCGGCTGGAGCGTGTGGTGTTCCTGACGGGCGCACGGGGCCGCCGGGCCCCACCTGGCATGGCAGTGGTGACGCTAGGCGAGGAGCGACCCATTGGACACCTGCACCTGGCGCTGCGCCACCTGC 31 0.5556946356989921 0.7740319279613571 0.6646392969964361 Y Y 3.32696667658884 3.36720643949681 3.32696667658884 0 0.995225943646996 0.0 Y 0.0 N Y 290 57309 ENSG00000124006 ENSG00000123989 + - 2 2 220436581 220408509 coding coding OBSL1 CHPF 220415451 220403669 - - 0.0 220416251 220406911 - + N - - N SA465 1 0.0 1.0 1 0 1 N Y 0.0 0.0 23 1.3220603803297 1.48973633100567 1.48973633100567 1.3220603803297 4 - - 0.9662964904563258 HCT116-unstranded 0.05 115712 AAAAGGCTGGAATTTGCCTCCCTTCTTCTTGTCTATCTTAATAGCCACAGGTCTTTTTCTTGTTGGATAATTCTCCACCAAAATTTTCTCCTTGCAAAAGGGAAACTTCACCTTCAGCTGTAAATGTCAGGAAATGGGGTACATTGCTGAGAAAGCCTGGGAATCACTGCTCTTGTAAG|CTGAGGTCCCCGCCTGGCGCTCCGGCTGGCAGAGCGGCTGGCCGGCGACCGGCGGTCCCGGGCGGGCGGCGGACTCGGCGGCACTGCGCGCGGCAGCCTCCGCATCAGCAGCCGCCGCGGCAGCAGCACCAGCAGCGCACCCGCCTCTCAGTCGGCCGTGGCCTCCATTGCTCTCCCCACTGCCGCCACC 9 1.0 0.317624102800644 0.7918730724975871 N Y 3.62361669590707 3.21075977977757 3.21075977977757 2 0.99442850671901 0.0 Y 0.0 N N 1004 657 ENSG00000109265 ENSG00000174799 - + 4 4 57194791 56899270 utr5p downstream KIAA1211 CEP135 57036361 56815037 + + 0.0 57045450 56915465 - + N - - N SA465 1 0.291925465838509 1.0 1 0 1 N N 0.0 0.291925465838509 9 1.14793535462774 1.03830107918577 1.14793535462774 1.03830107918577 4 - - 0.955235330599115 HCT116-unstranded 0.05 79994 GTGCCATCATGACAGTCCTCGCAGCTGTCTGCACTAAGATCCCAGAAGGGAGGCTTGCCATTATTTTCCTTCCGATGTTCACGTTCACAGCAGGGAATGCCCTGAAAGCCATTATCGCCATGGATACAGCAGGAATGATCCTGGGATGGAAATTTTTTGATCATGCGGCACATCTTGGGGGAGCTCTTTTTGGAAT|GATCTCCCTCTACACCTGGCGCCTCGCCTGCTGCCTGCTGGGACATGGCCTGGCCTGCTCAGCTGACCTGCTGCCACTTCTAGGCAGCCGTCATGTCACTTTGCTACAACTTCAAGCTAAGACAGGCAATGTTTTGGGAGATGAATCTGTTTTCTGACTGGCCAGGGATGTGCTGCAGTCCCCTCCCAGGCGCAGACTGGATACCTTCCAAGTACAACCTTGAA 13 1.0 0.687573602286438 0.386514749172883 Y Y 3.31319590126568 3.11761290642523 3.11761290642523 0 0.0 0.0 Y 0.0 N N 2960 1132 ENSG00000175193 ENSG00000180834 + - 3 3 183602721 183543382 coding upstream PARL MAP6D1 183547173 183533664 - - 0.0 183551280 183544520 - + N - - N SA465 1 0.0 1.0 1 0 1 N Y 0.0 0.0 14 1.25756963006972 1.3285094553557 1.3285094553557 1.25756963006972 4 - - 0.974229120867432 HCT116-unstranded 0.05 43658 CCCTGTACCACAGACCGCCACTCCCTTCATGAGGAGGAGAACAACATCTTTAAGCGGTCAAGGAAGAAGGAGCGACAGATATTGCCTGTGCTGCAAGTGCAGCTTCTTGC|AACCCAGACCTGGACTCAGAGGCGCTGCTAGCCCTGCCCCTGCCTCAGCTGGTGCAGAAGTTACACAGTAGAGAGCTGGCCCCTGAGGCCGTGCTCTTCACCTATGTGGGAAAGGTAAGGCCAGCCAAGGCCAGCCCCTCCCTGGGAAAGGTAAG 2 2.48262079135251e-06 0.853236363348783 0.912055311703126 N Y 3.5758885146813 3.31233066536513 3.31233066536513 0 0.990943267259057 0.0 Y 0.275461380724539 N Y 3006 931 ENSG00000117481 ENSG00000117480 + - 1 1 46830824 46879520 coding coding NSUN4 FAAH 46805849 46859937 + + 0.0 46826500 46867763 + - N - 0.293446239096812 N SA465 1 0.0 1.0 1 0 1 N N 0.0 0.0 6 1.31561130530371 0.902870503639798 1.31561130530371 0.902870503639798 4 - 10.5 0.93177242191294 HCT116-unstranded CGHSA0337 0.05 463 CAGTAGTTCTTCCGGAACTTCAGACAGATTCAGCCGAATACTCAAGCACATCTTGACCCAGAGGAGCTACTACCCACTCTACCCGCCCCAAGAAGACATGGCCATTGACTATGAGTCGTTCTATGTTTACGCACAGCTGCCTGTCACCCCAGATGTCCTCATCATCCCGTCAGAGCTGAGGTACTTCGTGAAG|CTCCTCAGCCCTGGACCGGGGACAAGTAACCCTCGGTGACAAGACCAAAGTGCACTGCTGCCCACACAGTTCCTACCTTTCTGGCTTCAATTCTTCAGAAGAGTTTGCCGTCCTTTGGGGAGAACGTGATTTTTGTTATCTCAGCCCACTGACTTCATTGATCTCTAATCTTTTTTAATTCCTTGGGCCAACTTTGTTC 12 0.608086809304615 1.0 0.44394981083179497 Y Y 3.700409212917549 3.50678730447985 3.50678730447985 0 0.0 0.0 Y 0.0 N Y 3293 2633 ENSG00000014138 ENSG00000149798 + - 11 11 65073060 65089900 coding utr5p POLA2 CDC42EP2 65029233 65082289 + + 0.0 65063461 65088015 + - N - - N SA465 1 0.0 1.0 1 0 1 N Y 0.0 0.0 10 1.27046778012172 1.14793535462774 1.27046778012172 1.14793535462774 4 - - 0.955469091879001 HCT116-unstranded 0.05 18876 CAAGCTATCCTCCTGCCTCGGCCTCCCATGCTGTTGGGATTACAGCTATAAATTCATACAATTATCAGAGTTTGGTTTTGGTCAAGTCATAATTGTGAGTGAAGAACCATGGAAGGAGAACATTTCTTGCTCATCAACTACTTTCATAAAATCAACAATTTGCTTAA|GTGTTTGCTTCAGAATGTATACAGAAGATGAAGCTAGGAAAATAGGAGTGGTTGGCTGGGTGAAGAATACCAGCAAAGGCACCGTGACAGGCCAAGTGCAGGGGCCAGAAGACAAAGTCAATTCCATGAAGTCCTGGCTGAGCA 9 0.430731577657091 0.9061706154341 0.557554721557701 Y Y 3.09975389471248 3.5733677143949105 3.09975389471248 0 0.882322827635328 0.0 Y 0.993077813390313 N N 53 168 ENSG00000239235 ENSG00000170634 + - 2 2 54307601 54532437 intron coding AC008280.5 ACYP2 54197975 54342540 + + 0.0 54284497 54362590 + - N - - N SA465 1 0.287769784172662 1.0 1 0 1 N Y 0.287769784172662 0.0 8 0.896421428613799 0.8577269784578081 0.896421428613799 0.8577269784578081 4 - - 0.953090548453255 HCT116-unstranded 0.05 26751 TCATGGGATTTTGGACCAGGGGGAGGGTGTCCTGATTATTTTCGATGAACCCCCAGTAGATAAAACTTACGAAGCTGCTCTGGAAACAATTCAGAACATGAGCAAAGTAGTGGATTCCCTCTACAACAAAGCCAAGAAACTGACAT|AGGCAGATCCAAGGGGGCAGCACGCTTCCCGGGAGCGCCCCCGCCTCCTCTCCGGGGCCGCCGCAGGCTCGGTGAGCGGTTTTATCCCTCCGGCCGGCAGGCTGGGCGCGCAGGGGCGCGAGCCCCCGCCCGGCGCGCAGCAGCACCATGGGCACGGTGCTGTCCCTGTCTCCCAGCTACCGGAAGGCCACGCTGTTTGAGGATGGC 6 1.0 0.8427209234442141 0.463588452312967 Y Y 3.5899953172448904 3.15575602456989 3.15575602456989 0 0.0 0.0 Y 0.0 N Y 15694 925 ENSG00000108671 ENSG00000176749 + - 17 17 30810336 30818274 utr3p intron PSMD11 CDK5R1 30771279 30813637 + + 0.0 30807649 30814494 + - N - 0.0792861265896648 N SA465 1 0.22727272727272704 1.0 1 0 1 N Y 0.0 0.22727272727272704 5 0.677152877729848 0.960912178873785 0.960912178873785 0.677152877729848 4 - 4.4 0.980709927982333 HCT116-unstranded 0.05 128780 GCCAGCAGAGAGCTCTGCTGTAGCTGCCACTGAGAAGAAGGCGGTGACTCCAGCTCCTCCCATAAAGAGGTGGGAGCTGTCCTCGGACCAGCCTTACCTGTGACACTGCACCCTCACGGCCACCCGACTACTTTGCCTCCTTGGATTTCCTCCAGGGAGAATGTGACCTAATTTATGACAAATACGTAGAGCTCAG|CAACCCGACTCCGAGAATGGACGTTTCATTTATTCATTTACTCACCAAATGTTTACTAAGAGCCTACTATGAGTCAAGCACTATGTGTCAGATCCTGAGAATAAAGCAGTGAGCAACAGAAGATCCCTGCCCTCCAGTAGCTAGCATTCTATGGGGACTCGGACAACAAACCAGAATAAGTAAATAAAAT 10 0.997731071332191 0.7141394019375709 0.304466193523665 Y Y 3.5816815158199 3.48639814491089 3.48639814491089 3 0.994750441996464 0.0 Y 0.94750441996464 N N 1703 5507 ENSG00000167774 ENSG00000167775 + - 19 19 8386280 8373240 utr3p upstream NDUFA7 CD320 8376234 8367011 - - 0.0 8376296 8373768 - + N - - N SA465 1 0.845744680851064 1.0 1 0 1 N Y 0.0 0.845744680851064 27 1.14148627960174 1.21242610488773 1.21242610488773 1.14148627960174 4 - - 0.975149677266048 HCT116-unstranded 0.05 320 GAACTTTAAGACTTTGCAGCTGGATAACAACTTTGAGGTAAAGTCACTGATCTTTGACCAGAGTGGTACCTACCTGGCTCTTGGGGGCACGGATGTCCAGATCTACATCTGCAAACAATGGACGGAGATTCTTCACTTTA|CAGAGCCCCACGATGTCGGCCAACGCCACACTGAAGCCACTCTGCCCCATCCTGGAGCAGATGAGCCGTCTCCAGAGCCACAGCAACACCAGCATCCGCTACATCGACCACGCGGCCGTGCTGCTGCACGGGCTGGCCTCGCTGCTGGGCCTGGTGGAGAATGGAGTCATCCTCTTCGTGGTGGGCTGCCGCAT 9 0.954330685786506 0.92242842294383 0.3649637534302 N Y 3.5397463357327204 3.48337348351473 3.48337348351473 0 0.0 0.0 Y 0.0 N Y 17105 158 ENSG00000110107 ENSG00000183134 + - 11 11 60674060 60623444 coding intron PRPF19 PTGDR2 60658202 60618413 - - 0.0 60665318 60621204 - + N - 9.04799350933034 N SA465 1 0.0 1.0 1 0 1 N N 0.0 0.0 11 0.928666803743792 0.986708478977779 0.986708478977779 0.928666803743792 4 - 0.181818181818182 0.988090418209998 HCT116-unstranded 0.05 467 GAAGTCCTGTACTGCTATGAAGTGCAGTTGGAAAGCAAGGTGCGGCGGAAAGGCCTGGGGAAGTTCCTCATACAGATCCTGCAGCTCATGGCCAACAGCACACAGATGAAGAAGGTTATGTTAACAGTATTTAAACACAATCATGGTGCCTACCAGTTCTTCAGAGAAGCGTTGCA|GAATTGGCCGTTGGGCTTACCTCCTGCTTCGTGACCTTCCTCCTGCCAGCGGGCTGGATCCTGTCACACCTGGAGACCTACAGGAGGCCAGAGTGAAGGGGTCCGTTCTGTCCCTCACACTGTGACCTGACCAGCCCCACCGGCCCATCCTGGTCATGTTACTGCATTTGTGGCCGGCCTC 19 0.933254072295158 0.984973797449677 0.680755329256761 N Y 3.86529765513778 3.5514509715161 3.5514509715161 4 0.0 0.0 Y 0.0 N Y 1538 10252 ENSG00000110583 ENSG00000176340 + - 11 11 63724800 63744015 coding coding NAA40 COX8A 63706431 63742079 + + 0.0 63721521 63743697 + - N - - N SA465 1 0.0 1.0 1 0 1 N N 0.0 0.0 13 0.922217728717793 1.15438442965374 1.15438442965374 0.922217728717793 4 - - 0.9762734021586508 HCT116-unstranded 0.05 10909 AGTAGCCCCAGAAATAAAAGCATCAGAGAGACGAACAGCTGTGGCCATTGCAGATTTGGAATGGAGAGAAATGGAAGGAGATGATTGCGAGTTCCGTTATGGAGATGGTACAAATGAGGCTCAGGACAATGATTTTCCAACA|GGTGCTGTCCTGGAGCCGAGAGCTGCCTTGCGCTTGGCGCGCCCTGCACACCTCCCCGGTCTGCGCCAAGAACCGGGCGGCCCGAGTACGCGTAAGCAAGGGGGACAAGCCGGTGACCTACGAGGAGGCACACGCGCCGCACTACATCGCCCACCGTAAAGGCTGGCTGTCGCTGCACACAGGTAACCTGGATGGAGAGGACC 7 0.90180806369652 0.2402921845608469 0.154669242613455 Y Y 3.59425138750382 3.26248291143709 3.26248291143709 0 0.992978099812749 0.0 Y 0.571664088577709 N Y 3988 3765 ENSG00000106608 ENSG00000062582 + - 7 7 43966010 43909492 coding coding URGCP MRPS24 43915493 43906157 - - 0.0 43921258 43908975 - + N - - N SA465 1 0.276119402985075 1.0 1 0 1 N Y 0.276119402985075 0.0 5 0.864176053483806 1.07699552934176 1.07699552934176 0.864176053483806 4 - - 0.94865187020369 HCT116-unstranded 0.05 94196 CCTCATCTCCTTGAAGCACGGGTACATTCCAGGCAAAAACAGGGATCTCAAGGTGGTCAAGAAGAACATTCTGGATAGCAAGCCCACTGCAAACAAGAAGTGCGACCTGATCAGCATCCCCAAGAAAACCACAGACACGGCCAGTGTG|GTGCCATGCCTCTGCAACTCCTCCTGTTGCTGATCCTACTGGGCCCTGGCAACAGCTTGCAGCTGTGGGACACCTGGGCAGATGAAGCCGAGAAAGCCTTGGGTCCCCTGCTTGCCCGGGACCGGAGACAGGCCACCGAATATGAGTACCTAGATTATGAT 6 0.175439888932513 0.787716241195843 0.487846995292845 Y Y 3.3948364779275098 3.35926336043241 3.35926336043241 0 0.0 0.0 Y 0.0 N Y 20019 162 ENSG00000110880 ENSG00000110876 + - 12 12 109125372 109027735 coding coding CORO1C SELPLG 109038885 109015686 - - 0.0 109042381 109018088 - + N - 9.17921350594538 N SA465 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 10 1.3607548304857 0.928666803743792 1.3607548304857 0.928666803743792 4 - 0.4 0.9112418006949772 HCT116-unstranded 0.05 111534 GCCTATGTGAAAACTTCTGAGAAACTTGGAGAGTGGAATGAGAAAGTGACCCAGTCAGACCTCTACAAGAAGACTCAGGAAACTCTTTCACAGGCAGGACAGAAGACTTCAGCTGCCCTGTCCACAGTGGGCTCTGCCATCAGCAGGAAGCTTGGAGACATG|AGAATAGCCTAACATGGCAGACCAGAGACAGCGCTCACTGTCTACCTCTGGGGAGTCATTGTACCACGTCCTTGGGTTGGACAAGAACGCAACCTCAGATGACATTAAAAAGTCCTATCGGAAGCTTGCCTTGAAATATCACCCCGACAAGAACCCCGACAACCCGGAGGCCGCGGACAAGTTTAAGGAGATCAACAACGCGCACGCCATCCTCACGGACGCCACAAA 7 0.6229651119211479 0.3965908489090539 0.0898100581272564 Y Y 3.5246463161926003 3.5963175270436003 3.5246463161926003 0 0.981528843421427 0.0 Y 0.0 N Y 19983 11989 ENSG00000101150 ENSG00000101152 + - 20 20 62522898 62567384 coding utr5p TPD52L2 DNAJC5 62496596 62526518 + + 0.0 62514173 62559688 + - N - - N SA465 2 0.0 1.16666666666667 1 2 2 N Y 0.0 0.0 12 0.902870503639798 0.883523278561802 0.902870503639798 0.883523278561802 4 - - 0.920042647581222 HCT116-unstranded CGHSA0577 0.05 42107 TCCCATGAATACAAACCTATTCAGCAACAGCACATAAGCCTTGGGTGCAAGTGATTCCCAGGTGGCAAAAGGCAGCCCCATCAGAGATCACGGGAGCAACAGTAAGGGACAGAGTTTTGGGGTCCACTTGTCCCTCAGCATGGAAGCCATCACCGTGGTCCTGCATAGAGTGAGTCTGCTTCTACTCTGGCATCTGAGAACAAGTGACTCTGCTTTAGACAAGCCCCTGGAGAGCCTGGCCATGGAGTGAG|ACGGATGTTTCCAGTCCTAAAGATTAGTGTCACAGGGTTGGACCCCAATGCCATGTACTCCCTCCTGCTGGACTTTGTCCCTACGGACAGTCACCGCTGGAAGTACGTCAACGGGGAATGGGTGCCCGCTGGCAAGCCAGAGGTCTCCAGCCACAGCTGCGTCTACATTCACCCGGACTCCCCCAACTTTGGGGCCCACTGGATGAAAGCTCCCA 4 0.319366930561976 0.590772886278447 0.548742896130918 N Y 3.4084792721746804 3.58064844605001 3.4084792721746804 0 0.995358796872666 0.0 Y 0.0 N N 1665 212 ENSG00000213064 ENSG00000143178 + - 1 1 168212378 168283664 utr3p coding SFT2D2 TBX19 168195176 168250278 + + 0.0 168212307 168260398 + - N - - N SA465 1 0.0 1.0 1 0 2 N N 0.0 0.0 10 1.41879650571968 1.36720390551169 1.41879650571968 1.36720390551169 4 - - 0.975559412561198 HCT116-unstranded CGHSA0039 0.05 123046 AAGTTGTGGCCCGGAACCATGACCATCAGGAGATCGCAGTCCCTGTGGCCAACCTCAAGCTGTCCTGCCAACCCATGTTACGATGAGCAATGATGTTTCTGAGGAGGAGAGCGAGGAAGAGGAAGAGGACAGTGATGAGGAAGAAGTTGAGCTGTGCCCCATCCTTCCTGCCAAAAAGCAGGGGGGCAGGCCCTAGCCCTCCTAG|GCTGTTGCACTTGCTGGTCCTCTGCCTCCAAGCCCAGGTAACTGTTCAGTCCTCACCTAATTTTACACAGCATGTGAGGGAGCAGAGCCTGGTGACGGATCAGCTCAGCCGCCGCCTCATCCGGACCTAC 3 0.13527280409589 0.317248715128831 0.5689938853889599 Y Y 2.89319139223026 3.4320914322326805 2.89319139223026 0 0.0 0.0 Y 0.0 N Y 4328 56 ENSG00000107833 ENSG00000107831 + - 10 10 103543170 103535827 utr3p coding NPM3 FGF8 103541082 103530081 - - 0.0 103541484 103535533 - + N - - N SA465 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 5 1.18018072975774 0.748092703015832 1.18018072975774 0.748092703015832 4 - - 0.962669671783181 HCT116-unstranded 0.05 108999 CTTGCCCAGCAAGTGTGTGGCTATCGACTGTGAGATGGTGGGCACGGGACCCCGAGGGCGGGTAAGCGAGCTGGCCCGCTGTTCCATTGTGAGCTACCATGGCAATGTCCTCTATGACAAGTACATCAGGCCTGAGATGCCCATCGCTGACTACCGTACCCGCTGGAGTGGCATCACTCGGCAGCACATGCGCAAGGCTGTCCCCTTCCAGGTGGCCCAGAA|AGAGATCCTGCAGCTCCTGAAAGGCAAGCTGGTGGTGGGTCATGACCTGAAGCACGACTTCCAGGCACTGAAAGAGGACATGAGCGGCTACACAATCTACGACACGTCCACTGACAGGCTGTTGTGGCGTGAGGCCAAGCTGGACCACTGCAGGCGTG 1 0.144211117863876 0.981195310877777 0.945862964931596 Y Y 3.5597647729410897 3.35463656781289 3.35463656781289 0 0.0 0.229874746669325 Y 0.223562244592844 N Y 10039 130 ENSG00000181026 ENSG00000172183 + - 15 15 89175513 89199714 coding coding AEN ISG20 89164527 89179384 + + 0.0 89169980 89195341 + - N - - N SA465 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 5 0.928666803743792 0.7416436279898341 0.928666803743792 0.7416436279898341 4 - - 0.954166600274042 HCT116-unstranded 0.05 43644 ATGAACCGCGAGGGAGCTCCCGGGAAGAGTCCGGAGGAGATGTACATTCAGCAGAAGGTCCGAGTGCTGCTCATGCTGCGGAAGATGGGATCAAACCTGACAGCCAGCGAGGAGGAGTTCCTGCGCACCTATGCAGGGGTGGTCAACAGCCAGCTCAGCCAGCTGCCTCCGCACTCCATCGACCAG|GTTAACAAGCACAAGCCCTGGCTGGAGCCCACCTACCACGGCATAGTCACAGAGAACGACAACACCGTGCTCCTCGACCCCCCACTGATCGCGCTGGATAAAGATGCGCCTCTGCGATTTGCAGGTGAGATTTGTGGATTTAAAATTCACGGGCAGAATGTCCCCTTTGATGCAGTGGT 3 0.930197170095314 0.9718404664465228 0.8456698393619759 Y Y 3.17564132302907 3.48912663185998 3.17564132302907 0 0.994428671734286 0.0 Y 0.00273224043715858 N Y 1155 19211 ENSG00000178585 ENSG00000171603 + - 1 1 9970394 9884584 coding coding CTNNBIP1 CLSTN1 9908334 9789084 - - 0.0 9931245 9833452 - + N - - N SA465 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 9 0.986708478977779 1.14148627960174 1.14148627960174 0.986708478977779 4 - - 0.98280855921248 HCT116-unstranded CGHSA0344 0.05 59654 CCAGGCCTGCCTTCTGTGAAGCAAGAGCCACCTGACCCAGAGGAGGACAAGGAGGAGAACAAGGATGATTCTGCCTCCAAATTGGCCCCAGAGGAAGAGGCAGGAGGGGCTGGCACACCCGTGATCACGGAGATTTTCAGCCTGGGTGGAACCCGCTTCCGAGATACAGCAGTCTGGTTGCCAAG|AGATCCAAGCCTCCTAAAGGCCAAGGAGCTGAGCACCATCTAGAAAGAATCCGACGCAGCCATCAGAAGCATAATGCTATTTTGGCTTCCATTAAGTCAAGTGAGCGGGATCGCTTGAAAGCTGAGTGGGACCAGCACAATGACTGCAAGATTTTGGACAGCCTTGTGCGAGCAAGAATCAAGGATGCTGT 11 0.9618317045678052 0.501653961001445 0.5113278389970679 Y Y 3.85425536676371 3.45400817511148 3.45400817511148 0 0.0 0.0 Y 0.0 N Y 4980 50 ENSG00000141644 ENSG00000172361 + - 18 18 47808144 47792892 coding coding MBD1 CCDC11 47793252 47753563 - - 0.0 47799047 47788589 - + N - 1.54484797297297 N SA465 1 0.0 1.0 1 0 1 N Y 0.0 0.0 15 1.07054645431576 1.21242610488773 1.21242610488773 1.07054645431576 4 - 0.466666666666667 0.982450241840638 HCT116-unstranded 0.05 370 CCGCCATGGGCTTCACCACTCTGGCCACCGGCTACCCTTCCCCTCCACCCGGCCCCGCCCCTGCTGGGCCTGGGGACAGCTTGGACGTGTTTGGACAGACGCCTTCCCCTCGAAGGACGGGGGAGGAATTGCTCCGACCGGAGACCCCACCACCCACGTTACCTACTTCAG|GAACACTTCCACCTGCACCCGGGAACGCTGCTGCGCCTGAGAGGCTGGAGGCTCTGAAATACCAACGGATAAAGAAGCCCAAAAAGTCATCCAAGGGCTCTTCGAAGTCAAAGAAACGATCCGACGATTCTGCCTCCCAGACTCAGCA 6 0.829889960802772 0.9886904510118628 0.403724577580896 Y Y 3.23057053032324 3.29400764533596 3.23057053032324 0 0.0 0.0031250000000000396 Y 0.0 N Y 694 87 ENSG00000080854 ENSG00000254918 + - 11 11 133826880 133782257 coding coding IGSF9B RP11-259P6.1 133785185 133778459 - - 0.0 133789637 133781902 - + N - - N SA465 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 8 1.04475015421177 0.948014028821788 1.04475015421177 0.948014028821788 4 - - 0.987173876400798 HCT116-unstranded 0.05 115653 ACGAGCTCCTTCACTCCCTCCTTGTCAGGCACCAGAGACTGGTCCTGGTCATCTGCCAGCGGGGTTCCTGCCTGGCGGTAGATGCAGCGCACCGTGTAGCGCACTTCTGACCAGTAGTTCTGCAGCTGCTGAGGTTCCCGGTCCGCCTCTGCCGAAATTTCTCTGCGCTCACTGCAGGCCTCGCACGAGCATGCGGTGTCTGAAGGCAGCGTCTGTGCACCCAGAGCGAGCCTCCCACCACTGCCGGCCTCTGGCTGGGAGCCACCAAGCGAGGAGTGAAGAAGAAAATCTTGGCT|CACTGGCTGGTCAAGGCCGCCATGCCTCTCCTCCTTCTCCACGGTCCTGCGGCAGTCCGGGCACACCCACAGTGGCAGGTGCAGCACGCTGTTGCCCTTGGGAGCCATGGAAAGGGCCAATTTGCTCGCAGTCTTAATTCCACTCTCT 16 0.0162631581460582 0.350101965065758 0.792434348254972 Y Y 3.472331195140661 3.41525614272 3.41525614272 0 0.993258426966292 0.0 Y 0.244943820224719 N N 1905 11640 ENSG00000125386 ENSG00000063978 - + 4 4 2734292 2627047 utr5p utr3p FAM193A RNF4 2626988 2463947 + + 0.0 2626989 2598056 - + N - 71.570032915564 N SA465 1 0.0 1.0 1 0 1 N Y 0.0 0.0 17 1.28981500519971 0.9673612538997828 1.28981500519971 0.9673612538997828 4 - 1.82352941176471 0.9041099107215248 HCT116-unstranded 0.05 43514 GGCAGCGGCAGGCGGAGCAGGAGGCCACAGTGGCGCCGGCAGAGCAGGAGTGGCTGGAGGAGCTGTGGTTGGAGCAGGAGGTGGCACGGCAGGGCCTGGAGGGCTCCCTATGAGTGGCGGAGCAGGCCCAGGAGGCGCTGGAGCAACAGCTCCCCACACTGCACCATGAGCTCAGTTGGCTGCAGGAGCAGCTAG|CACAGGCAATCTGAAGGCAAATCCTGTTTAGACCCAGGCGAAGGTTCCCGGTGACCCGGGCTCTCACCAGCCAATTGTCCCTTGCCGTCCTCCTGAGGGTGCCTGGAGCTTAAGCACTGTGTGCTCTTGGCCTCCACACTGGGGATGCCGCTGACTCCCACTGTCCAGGGCTTCCAGTGGATTCTCCGAGGCCCTGATGTAGAAAC 6 0.924617410903562 0.787716241195843 0.7388366629509631 Y Y 3.45760189796111 3.65128658713112 3.45760189796111 0 0.9948845516009692 0.0 Y 0.0 N Y 1942 2821 ENSG00000215908 ENSG00000219481 + - 1 1 16971178 16940083 intron intron CROCCP2 NBPF1 16944751 16888818 - - 0.0 16952270 16935274 - + N - 0.525097705199988 N SA465 6 0.127450980392157 2.5 1 9 1 N Y 0.0 0.127450980392157 10 1.28981500519971 1.24467148001772 1.28981500519971 1.24467148001772 4 - 23.2 0.90761691072633 HCT116-unstranded 0.05 69727 ACAGGGCCTGGCACAGAATAAATGCTTTGGGGCGCCTGACACTGATCACACTACCCCTGCCCTCCTGAGGCTCCACATCTATGTATCCCATGGAAACCAGAGTCACAAATGGAGACAGATTCAGAGACTCAGCCTGAAAGGAGACAGAAGAGGCCGAGAGCTACAGGTTGCATGGCCCAGGATGGCAAAG|ACTCCACGGTTAATATCACAGCAGCTGGACAGAGACAAGAGCAGAGTCAGGCATCCTGGGCTGGCAGCTGCCTGTTGGGACTACACAGCCCCAAGCCAGCTCCCTGTCTCCCTAGGCAGAACACACGTTGGCAGAGACACTTGCTTTCTCCTCTGGCTGTTTCAAGCACTGGCCTAAGAGGTGGGGACTTGGGAGGAAGAGAACTGACAT 9 0.6868098380507989 0.946883748728189 0.407546403729734 Y Y 3.46977054206091 3.72824693801095 3.46977054206091 0 0.0 0.0 Y 0.0 N N 3545 248 ENSG00000196155 ENSG00000135740 - + 16 16 67323402 67306093 utr5p coding PLEKHG4 SLC9A5 67311413 67271586 + + 0.0 67311497 67300014 - + N - 0.203693597766065 N SA465 1 0.145251396648045 1.0 1 0 1 N Y 0.145251396648045 0.0 8 1.15438442965374 1.3543057554597 1.3543057554597 1.15438442965374 4 - 1.75 0.9629868065602328 HCT116-unstranded 0.05 85391 AGGGAATCAGGCCTGTAGCTCGGATATGCACTGGCTCATCAACAAGTGCACTCACAGGGGTAGCTGTCAACTGGATCATTTTTTTAGTGTGGCACCTGGGATGATTCTTCAGGAATATCTTCAGCAAAACCTCAAA|ACCTGAATCGAGACCAAAATTCTCTACATGGTGTCCCTGAGACTGTCCACATGAAGACTCTTCTGGTAATGCCCGACACAGATCGCGCCGCCATCTTCGATGAGATCCACGGGCCTGAGCGCAGCCTTCAGCCAGCAGTGACGCGCCCAGACCAGCCAATCGGATACAAT 1 0.5772345696590401 0.8689548137219889 0.9055768466535692 Y Y 3.44615838200292 3.6035982586987 3.44615838200292 1 0.0 0.0 Y 0.0 N Y 81 847 ENSG00000136881 ENSG00000136897 - + 9 9 104145801 104160896 utr5p intron BAAT MRPL50 104122699 104149915 - - 0.0 104133745 104160783 + - N - 0.432932507415544 N SA465 1 0.0 1.0 1 0 1 N Y 0.0 0.0 5 0.909319578665796 0.8577269784578081 0.909319578665796 0.8577269784578081 4 - 28.2 0.957081611208168 HCT116-unstranded 0.05 43051 ATCTGTGTGCTGCGCCGGCCAGGAGCTAACCATGAAGGCTCAGCTTCCCGCCAGAAAGCCCTGAGCCTAGTAAGCTGTTTCGCGGGGGGCGTCTTTTTGGCCACTTGTCTCCTGGACCTGCTGCCTGACTACCTGGCTGCCATAGATGAGGCCCTGGCAGCCTTGCACGTGACG|TTACAGGCCCAAAAACTGCGACTGGCATACACAAGGAGCTCTCATTATGGTGGGTCTCTGCCCAATGTTAACCAGATTGGCTCTGGCCTGGCCGAGTTCCAGAGCCCCCTCCACTCACCTTTGGATTCATCTCGGAGCACTCGGCACCATGGGCTGGTGGAACGGGTGCAGCGAGATCCTCGAAGAATGGTGTCCCCACTTCGCCG 16 0.889647616253294 0.3702130467547801 0.371517622265789 Y Y 3.56914214935951 3.43681151080804 3.43681151080804 0 0.994267957884575 0.0 Y 0.472652125380879 N Y 4629 2111 ENSG00000143570 ENSG00000160741 + - 1 1 153940188 153931101 coding coding SLC39A1 CRTC2 153931575 153920145 - - 0.0 153934696 153927642 - + N - - N SA466 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 10 1.16865462425959 1.23659966055375 1.23659966055375 1.16865462425959 4 - - 0.984848035847521 HCT116-unstranded CGHSA0331 0.10 122475 GGCGGACCCGGAGCCGCCCCGGGGGGCGCCTCGCCCGCCTCCTCCTCCTCAGCCGCCTCGTCCCCGTCCTCGGGCCGCGCCCCCGGCGCCGCGCCCTCCGCCGCCGCCAAGAGCCACCGCTGTCCCTTCCCGGACTGCGCCAAAGCCTACTACAAGTCCTCGCACCTAAAGTCGCACCTGCGGACGCACACA|GGGCTGGGTTACGACCCCTACAACCCTGAGCTGCCCAAGCCCCCCGCGCAGAGGGAGAATGGCACCCTGGGCCTGGGGGAGGAGCCGCGCCCGGATGTGCTGGAGTTGGAGCTGGTCAACCAGGCCATCGAGGCCGTGCGCAGTGAGGTGGAGCTGGAGCAGCGGCGCTACCGGGAGCTGCTGGAGACGACCCGTGAGCACCGCTC 32 1.0 0.814253703202109 0.651475543225798 Y Y 3.5246463161926003 3.3576612292090497 3.3576612292090497 1 0.0 0.0 Y 0.0 N Y 7313 5430 ENSG00000129911 ENSG00000079313 + - 19 19 1863567 1848452 coding intron KLF16 REXO1 1852399 1815248 - - 0.0 1863040 1828630 - + N - - N SA466 1 0.380710659898477 1.0 1 0 1 Y Y 0.380710659898477 0.0 29 1.33851721499499 1.31813370410675 1.33851721499499 1.31813370410675 4 - - 0.990457800584618 HCT116-unstranded 0.10 77117 AAGATGCTACTGCAGTGGTCCCTCCAATGTGTTTGCTGCCAAATTCACATTATGAGCAAGTCATGACTGCATTTGGAGGCAAAGGGTATTTTGTACAAACACCAGAAGAACTCCAAAAATCCCTGAGGCAGAGCCTAGCAGACACAACTAAACCTTCTCTTATCAACATCATGATTGAGCCACAAGCCACACGGAAGGCC|CAGCCCTTCCCAGCCTGGATCAGAAGAAGCGTGGTGGCCACAAAGCATGCTGCCTGCTGACGCCTCCTCCACCACCACTGTTCCCACCACCATTCTTCAGAGGTGGCCGAAGTCCGCTTCTCTCCCCAGACATGAAGAATCTCATGCTGGAACTGGAGACCTCGCAGTCCCCGTGCATG 5 0.8748346317270601 0.460911499433476 0.5206957463390429 Y Y 3.6078144761642905 3.53039946453785 3.53039946453785 0 0.0 0.0 Y 0.314657453690091 N Y 723 140 ENSG00000131373 ENSG00000206561 + - 3 3 15643338 15563258 coding coding HACL1 COLQ 15602211 15491640 - - 0.0 15604865 15531144 - + N - - N SA466 1 0.0 1.0 1 0 1 N Y 0.0 0.0 10 1.26377767507142 1.0463535589300998 1.26377767507142 1.0463535589300998 4 - - 0.98888057501925 HCT116-unstranded 0.10 116716 GATCACCAGAGCTGTGATGTCCAAAATTCAGGTCTCTGAGCGGCCCCTGATGTTCCTGTTGGACACTCCTGGCGTGCTGGCTCCTCGGATTGAAAGTGTGGAGACAGGCCTGAAGCTGGCCCTGTGTGGAACGGTGCTGGACCACCTGGTCGGGGAGGAGACCATGGCTGACTACCTGCTGTACACCCTCAACAAACACCAGCGCTTTG|GGTGGACCAGGTGCTCTGAGGCTGGCGTACAGACACAGCACGTGCGACGGAGTGGTGTTGGTCCGACACCACGGGGCATGGGGATACGTGTGCAACCAGGAGTGGACGCTGGCAGAGGCCTCTGTCGTGTGCAGGCAGCTGGGCTGCGGCCCTGCCGTGGGCGCCCCCAAGTATGTCCCGCTGCCTGGAGAGATGGCCCAGCCCTGGCTTCACA 7 0.374807846036476 0.7980040536000671 0.830095008060457 Y Y 3.3112577428018906 3.50376264308368 3.3112577428018906 0 0.0 0.0 Y 0.0 N Y 635 149 ENSG00000148824 ENSG00000214279 + - 10 10 135234811 135337062 coding utr5p MTG1 RP11-108K14.4 135207598 135267432 + + 0.0 135216277 135269741 + - N - - N SA466 1 0.0 1.0 1 0 1 N Y 0.0 0.0 7 1.31813370410675 1.42005125854799 1.42005125854799 1.31813370410675 4 - - 0.965206359303072 HCT116-unstranded 0.10 98253 TGAGGATAGAAGCAGGAGGTTGATGAGGTGAGCCAAGCAGGCAGCCAGTCTCCAGAGGCTGAAGAAGTCAGGGAAGCGGATTCTGCCCTCAGAGCTCCCAGAGGCAGCCACCCTGCCAACAACACCTGGGCTTTAGCCTCCTGAGACTGATTTTGGACTTCTCATCTCCAGAATT|ATCTAGGAGAATACTAACCGTGAAGATGAAACAAGAATTGTCCATGTACCTTTTCCTGAGAAGCCACCAGCTGTGACTTTAAGCTCGCACTCTGATGTTCCCAGGATTTCTGTTCCTGCTTCATCGTCGCAATTCTATGCTCTAA 7 1.0 0.6576224125033321 0.7092568488257099 N Y 3.4320914322326805 3.52720696927234 3.4320914322326805 0 0.0 0.0 Y 0.0 N N 4821 2835 ENSG00000151748 ENSG00000100503 - + 14 14 51135049 51297839 upstream intron SAV1 NIN 51098776 51186481 - - 0.0 51145202 51210085 + - N - 0.6875577318373 N SA466 1 1.0 1.0 1 0 1 N N 1.0 0.0 5 0.828929442788779 0.917257989971189 0.917257989971189 0.828929442788779 4 - 20.8 0.987069575188393 HCT116-unstranded 0.10 106758 CCCGAATACTGAGGACACGGGCCTTTGCCGAGTGCTGTACTCCTGCGTCTTCGGTGCTGAGAAGTCACCTGATGACCCACGGCCGCATGGTGCCGAGAGGGACAGGCTTCTCCGGAAGGAACAGATTTTAGCTGTGGCC|AGTCTCGTTTCCTCTCAGTCCATCCACCCTTCATGGGGCCAGAGCCCTCTCTCCAGAATCTGAGCAGCAATGCCGTTTGCTGAAGACAAGACCTATAAGTATATCTGCCGCAATTTCAGCAATTTTTGCAATGTGGATGTTGTAGAGATTCTGCCTTACCTGCCCTGCCTCACAGCAAGAGACCAGGG 5 1.0 0.8776489469780571 0.6797832532078679 Y Y 3.76848670091893 3.22846030519079 3.22846030519079 0 0.985655378136515 0.0102210914195472 Y 0.4979382347780311 N Y 1352 12924 ENSG00000125843 ENSG00000088888 + - 20 20 3805949 3849280 coding utr5p AP5S1 MAVS 3801178 3827487 + + 0.0 3802940 3835205 + - N - - N SA466 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 13 1.02597004804185 0.842518450047611 1.02597004804185 0.842518450047611 4 - - 0.988576195437063 HCT116-unstranded 0.10 27762 CGCCACCAACAACTTTAGCTATGTTTTCTACATGTCCAGCTTCTTCCTCATCTCAGCTGCCCTCTTCATGGGTGGCAGCTTCTACGCCCTGCAGAAGAAGGAGCAAGGCAAGCAGGCTGTCGCGGCGGATGCCCTGGAGCGGGATCTTTTCTTGGAAGCCAAAGACGGTCCTGGGAAGCAACGGTCCCCTGAGATCAT|ATTTTGCAGTAATTTGCATCTGGACATGGGATACGGGAGGCCAGGCTGCTCCTCGCAGTACACCCACCCACGCCTGCACCTGCCTCAGCGAAGCCGCTCGCCGCTGGTTCCAGCACAGGCTAAAGAGCTTCGGCATCCAGAAAACCAGAAGCG 20 0.7767405699737729 0.325180474128075 0.433077441856207 Y Y 3.55128313764676 3.46448140203209 3.46448140203209 0 0.0 0.0 Y 0.0 N N 3288 3724 ENSG00000170190 ENSG00000125449 + - 17 17 73102257 73126360 coding upstream SLC16A5 ARMC7 73083822 73106047 + + 0.0 73100275 73105830 + - N - - N SA466 1 0.0 1.0 1 0 1 N Y 0.0 0.0 21 1.25018866781258 1.0055865371536 1.25018866781258 1.0055865371536 4 - - 0.964783374711178 HCT116-unstranded 0.10 107439 GGTGGATAGACACTCGAGACCAGAAATCATATTTTTGCTGAAAGTAGATGATTTACCTGAGGATAATCAGGAACGTTTTAATAGCCTTTTCTCTCTAAGGGAGAAGTGGACAGAAGAAGATATTGCTCCATATATTCA|GAAGCCGGGAAGCCAAGCTCCGCGGGACCGCTTCATGCCGCTGACTGGTGTAGAGCCCGCCAGAATGAACAGGAAGAAAGGAGACAAGGGCTTTGAAAGCCCAAGGCCATATAAATTAACCCATCAGGTCGTCTGCATCAACAACATAAATTTCCAGAGAAAATCTGTTGTGGGATTTGTGGAACTGACTATATTTCCCACAGTT 4 0.8334291211278041 0.389645212663291 0.41960295032331296 Y Y 3.5859375860788303 3.45041445226185 3.45041445226185 4 0.0 0.0 Y 0.0 N N 1757 7802 ENSG00000136982 ENSG00000064313 + - 8 8 120868250 120845103 coding utr5p DSCC1 TAF2 120846216 120743015 - - 0.0 120850499 120844838 - + N - - N SA466 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 7 0.8968744790829409 1.256983171442 1.256983171442 0.8968744790829409 4 - - 0.981016996899218 HCT116-unstranded 0.10 19611 GCCGGGCGGTGCTGGAGGTGACTGTGTCCCGCTCGGGGGGCCACGTGTGCTGGCTGCGGGAGGGGGCCGAGCTGTGCCCGGGAGATAAGTATGAGATGCGCAGCCACGGCCCCACCCACAGCCTGGTCATCCATGACGTTCGACCTGAGGACCAAGGCACTTACTGCTGCCAGGCCGGCCAGGACAGCACCCACACACGGCTGCTGGTAG|AGGGACCCGCTACATCAGCACGGAGCTGGGCATCAGGCAGAGGCTGCTGGTGGCGGTGCTGACCTCTCAGACCACGCTGCCCACGCTGGGCGTGGCCGTGAACCGCACGCTGGGGCACCGGCTGGAGCGTGTGGTGTTCCTGACGGGCGCACGGGGCCGCCGGGCCCCACCTGGCATGGCAGTGGTGACGCTAGGCGAGGAGC 24 0.38061506563201 0.931168415395602 0.796915796775804 Y Y 3.2720510496638 3.30232144676095 3.2720510496638 4 0.995085790438114 0.0 Y 0.0 N Y 250 54645 ENSG00000124006 ENSG00000123989 + - 2 2 220436581 220408509 coding utr5p OBSL1 CHPF 220415451 220403669 - - 0.0 220416251 220406911 - + N - - N SA466 1 0.0 1.0 1 0 1 N Y 0.0 0.0 23 1.47440728758332 1.3860787404009098 1.47440728758332 1.3860787404009098 4 - - 0.958416865971231 HCT116-unstranded 0.10 109785 GGCAGTGGGGAGAGCAATGGAGGCCACGGCCGACTGAGAGGCGGGTGCGCTGCTGGTGCTGCTGCCGCGGCGGCTGCTGATGCGGAGGCTGCCGCGCGCAGTGCCGCCGAGTCCGCCGCCCGCCCGGGACCGCCGGTCGCCGGCCAGCCGCTCTGCCAGCCGGAGCGCCAGGCGGGGACCTCAG|CTTACAAGAGCAGTGATTCCCAGGCTTTCTCAGCAATGTACCCCATTTCCTGACATTTACAGCTGAAGGTGAAGTTTCCCTTTTGCAAGGAGAAAATTTTGGTGGAGAATTATCCAACAAGAAAAAGACCTGTGGCTATTAAGAT 9 1.0 0.585902278108109 0.713208105330052 N Y 3.21075977977757 3.62361669590707 3.21075977977757 2 0.99312434691745 0.0 Y 0.0 N N 560 891 ENSG00000174799 ENSG00000109265 + - 4 4 56899270 57194791 downstream utr5p CEP135 KIAA1211 56815037 57036361 + + 0.0 56915465 57045450 + - N - 0.0421689337365803 N SA466 1 0.30128205128205104 1.0 1 0 1 N N 0.30128205128205104 0.0 10 1.05994256618893 1.01238104078302 1.05994256618893 1.01238104078302 4 - 0 0.9862136952487692 HCT116-unstranded 0.10 76685 TACGTGGGTAAAGTTGCCACAGGAAGATATGGACCATCACTTGGTGCAGCCCTGAAAGCCATTATCGCCATGGATACAGCAGGAATGATCCTGGGATGGAAATTTTTTGATCATGCGGCACATCTTGGGGGAGCTCTTTTTGGAAT|GATCTCCCTCTACACCTGGCGCCTCGCCTGCTGCCTGCTGGGACATGGCCTGGCCTGCTCAGCTGACCTGCTGCCACTTCTAGGCAGCCGTCATGTCACTTTGCTACAACTTCAAGCTAAGACAGGCAATGTTTTGGGAGATGAATCTGTTTTCTGACTGGCCAGGGATGTGCTGCAGTCCCCTCCCAG 10 0.7234319293863108 0.837387471523393 0.93577667797063 Y Y 3.31319590126568 3.11761290642523 3.11761290642523 0 0.0 0.0 Y 0.0 N N 3118 1043 ENSG00000175193 ENSG00000180834 + - 3 3 183602721 183543382 coding upstream PARL MAP6D1 183547173 183533664 - - 0.0 183551280 183544520 - + N - - N SA466 1 0.0 1.0 1 0 1 N Y 0.0 0.0 5 0.937641500859438 1.1075040915948402 1.1075040915948402 0.937641500859438 4 - - 0.9397390327550572 HCT116-unstranded 0.10 43138 ACAACATCTTTAAGCGGTCAAGGAAGAAGGAGCGACAGATATTGCCTGTGCTGCAAGTGCAGCTTCTTGCGGCTGGACTCCTTGCCACCAAACCAGGAGGCCATGTTGTCTATTCTACCTGCTCACTCTCACACTTACAGAACGAGTATGTGGTGCAAGGTGCCATTGAGCTCCTGGCCAATCAATACAGCATCCAG|AACCCAGACCTGGACTCAGAGGCGCTGCTAGCCCTGCCCCTGCCTCAGCTGGTGCAGAAGTTACACAGTAGAGAGCTGGCCCCTGAGGCCGTGCTCTTCACCTATGTGGGAAAGGCCTGGGAAGTGAACAAAGGGACCAACTGTGTGACCTCCTATCTGGCTGACTGTGAGACTCAGCTGTCTCAGGCC 8 0.632285123858679 0.753532996366786 0.22625734034672604 N Y 3.66951632120446 3.31233066536513 3.31233066536513 0 0.994722666557292 0.0 Y 0.994722666557292 N N 2665 915 ENSG00000117481 ENSG00000117480 + - 1 1 46830824 46879520 coding coding NSUN4 FAAH 46805849 46859937 + + 0.0 46827368 46867763 + - N - - N SA466 1 0.0 1.0 1 0 1 Y N 0.0 0.0 15 1.20262714240667 1.1210930988536798 1.20262714240667 1.1210930988536798 4 - - 0.928272044467662 HCT116-unstranded CGHSA0337 0.10 561 CTTTTCCACCTGGGGGCCGAGGAGATCAGTAGTTCTTCCGGAACTTCAGACAGATTCAGCCGAATACTCAAGCACATCTTGACCCAGAGGAGCTACTACCCACTCTACCCGCCCCAAGAAGACATGGCCATTGACTATGAGTCGTTCTATGTTTACGCACAGCTGCCTGTCACCCCAGATGTCCTCATCATCCCGTCAGAGCTGAGGTACTTCGTGAAG|CTCCTCAGCCCTGGACCGGGGACAAGTAACCCTCGGTGACAAGACCAAAGTGCACTGCTGCCCACACAGTTCCTACCTTTCTGGCTTCAATTCTTCAGAAGAGTTTGCCGTCCTTTGGGGAGAACGTGATTTTTGTTATCTCAGCCCACTGACTT 8 0.541165130498895 0.522707040144324 0.5 Y Y 3.700409212917549 3.50678730447985 3.50678730447985 0 0.0 0.0 Y 0.0 N Y 2336 2266 ENSG00000014138 ENSG00000149798 + - 11 11 65073060 65089900 coding utr5p POLA2 CDC42EP2 65029233 65082289 + + 0.0 65063461 65088015 + - N - - N SA466 1 0.0 1.0 1 0 1 N Y 0.0 0.0 11 1.47440728758332 1.05314806255951 1.47440728758332 1.05314806255951 4 - - 0.9611336434782328 HCT116-unstranded 0.10 122346 AGAGAGCTCTGCTGTAGCTGCCACTGAGAAGAAGGCGGTGACTCCAGCTCCTCCCATAAAGAGGTGGGAGCTGTCCTCGGACCAGCCTTACCTGTGACACTGCACCCTCACGGCCACCCGACTACTTTGCCTCCTTGGATTTCCTCCAGGGAGAATGTGACCTAATTTATGACAAATACGTAGAGCTCAG|CAACCCGACTCCGAGAATGGACGTTTCATTTATTCATTTACTCACCAAATGTTTACTAAGAGCCTACTATGAGTCAAGCACTATGTGTCAGATCCTGAGAATAAAGCAGTGAGCAACAGAAGATCCCTGCCCTCCAGTAGCTAGCATTCTATGGGGACTCGGACAACAAACCAG 14 1.0 0.604623032030232 0.29593935457056203 Y Y 3.5816815158199 3.48639814491089 3.48639814491089 0 0.9713430955755 0.0 Y 0.9770744764604 N N 1770 5379 ENSG00000167774 ENSG00000167775 + - 19 19 8386280 8373240 utr3p upstream NDUFA7 CD320 8376234 8367011 - - 0.0 8376296 8373768 - + N - - N SA466 1 0.8362573099415199 1.0 1 0 1 N Y 0.0 0.8362573099415199 29 1.16186012063017 1.16186012063017 1.16186012063017 1.16186012063017 4 - - 0.96488677582946 HCT116-unstranded 0.10 331 GGATCTGCGCAAGCTTAAGAACTTTAAGACTTTGCAGCTGGATAACAACTTTGAGGTAAAGTCACTGATCTTTGACCAGAGTGGTACCTACCTGGCTCTTGGGGGCACGGATGTCCAGATCTACATCTGCAAACAATGGACGGAGATTCTTCACTTTACAGAGC|CCCACGATGTCGGCCAACGCCACACTGAAGCCACTCTGCCCCATCCTGGAGCAGATGAGCCGTCTCCAGAGCCACAGCAACACCAGCATCCGCTACATCGACCACGCGGCCGTGCTGCTGCACGGGCTGGCCTCGCTGCTGGGCCTGGTGGAGAATGGAGTCATCCTCTTCGTGGTGGGCTGCCGCATGCGCCAGACCGTGGTCACCACCTGGGTGCTGCACCTG 8 1.0 0.394081151652808 0.8513013980081341 N Y 3.58424216889964 3.53209488171704 3.53209488171704 6 0.0 0.0 Y 0.0 N Y 13779 242 ENSG00000110107 ENSG00000183134 + - 11 11 60674060 60623444 coding intron PRPF19 PTGDR2 60658202 60618413 - - 0.0 60665318 60621204 - + N - - N SA466 1 0.0 1.0 1 0 1 N N 0.0 0.0 8 0.985203026265352 1.16865462425959 1.16865462425959 0.985203026265352 4 - - 0.9612949933279592 HCT116-unstranded 0.10 544 CCGGTTTGACGTGGAGTGTGGGGATGAAGTCCTGTACTGCTATGAAGTGCAGTTGGAAAGCAAGGTGCGGCGGAAAGGCCTGGGGAAGTTCCTCATACAGATCCTGCAGCTCATGGCCAACAGCACACAGATGAAGAAGGTTATGTTAACAGTATTTAAACACAATCATGGTGCCTACCAGTTCTTCAGAGAAGCGTTGCA|GAATTGGCCGTTGGGCTTACCTCCTGCTTCGTGACCTTCCTCCTGCCAGCGGGCTGGATCCTGTCACACCTGGAGACCTACAGGAGGCCAGAGTGAAGGGGTCCGTTCTGTCCCTCACACTGTGACCTGACCAGCCCCACCGGCCCATCCTGGTCATGTTACTGCATTTGTGGCCGGCCTCCCCTGGATCATGTCATT 19 1.0 0.644218204981078 0.604315947437881 N Y 3.86529765513778 3.5514509715161 3.5514509715161 4 0.0 0.0 Y 0.0 N Y 1473 10355 ENSG00000110583 ENSG00000176340 + - 11 11 63724800 63744015 coding coding NAA40 COX8A 63706431 63742079 + + 0.0 63721521 63743697 + - N - - N SA466 1 0.0 1.0 1 0 1 N N 0.0 0.0 19 1.31133920047733 1.34531171862441 1.34531171862441 1.31133920047733 4 - - 0.983313192394216 HCT116-unstranded 0.10 89884 CAGAAGAGTGGTTCGAAGGCAAGAATGCAGACCCAATCCTCATCTCCTTGAAGCACGGGTACATTCCAGGCAAAAACAGGGATCTCAAGGTGGTCAAGAAGAACATTCTGGATAGCAAGCCCACTGCAAACAAGAAGTGCGACCTGATCAGCATCCCCAAGAAAACCACAGACACGGCCAGT|GTGGTGCCATGCCTCTGCAACTCCTCCTGTTGCTGATCCTACTGGGCCCTGGCAACAGCTTGCAGCTGTGGGACACCTGGGCAGATGAAGCCGAGAAAGCCTTGGGTCCCCTGCTTGCCCGGGACCGGAGACAGGCCACCGAATATGAGTACCTAGATTATGATTTCCTGCCAGAAACGGAGCCTCCAGAAATGCTGAGGAACAGCAC 17 1.0 0.203795068880788 0.5643475694655389 Y Y 3.4048456965317007 3.34520999103131 3.34520999103131 0 0.0 0.0 Y 0.0 N Y 18975 296 ENSG00000110880 ENSG00000110876 + - 12 12 109125372 109027735 coding utr5p CORO1C SELPLG 109038885 109015686 - - 0.0 109042381 109018088 - + N - - N SA466 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 11 1.25018866781258 1.39966774765974 1.39966774765974 1.25018866781258 4 - - 0.971383340948186 HCT116-unstranded 0.10 89883 AAGCCCACTGCAAACAAGAAGTGCGACCTGATCAGCATCCCCAAGAAAACCACAGACACGGCCAGT|GTGGTGCCATGCCTCTGCAACTCCTCCTGTTGCTGATCCTACTGGGCCCTGGCAACAGCTTGCAGCTGTGGGACACCTGGGCAGATGAAGCCGAGAAAGCCTTGGGTCCCCTGCTTGCCCGGGACCGGAGACAGGCCACCGAATATGAGTACCTAGATTATGAT 10 2.9125454821779104e-08 0.7440371591339501 0.933190376348192 Y Y 3.4048456965317007 3.34520999103131 3.34520999103131 0 0.0 0.0 Y 0.0 N Y 18975 296 ENSG00000110880 ENSG00000110876 + - 12 12 109125372 109027735 coding utr5p CORO1C SELPLG 109038885 109015686 - - 0.0 109042381 109018088 - + N - - N SA466 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 5 0.917257989971189 1.06673706981835 1.06673706981835 0.917257989971189 4 - - 0.922314811373968 HCT116-unstranded 0.10 106789 AGAGGCTGAGGAGGAGGAGCTCAGGGCTGAGCTTACCAAGGTGGAAGAGGAAATTGTCACTCTGCGCCAGGTCCTGGCAGCCAAGGAGAGGCACTGTGGAGAGCTCAAGAGGAGGCTGGGCCTCTCCACCCTGGGGGAGCTGAAACAGAACCTGTCCAGGAGCTGGCATGACGTGCAGGTCTCTAGCGCCTACAAGAAGACTCAGGAAACTCTTTCACAGGCAGGACAGAAGACTTCAGCTGCCCTGTCCACAGTGGGCTCTGCCATCAGCAGGAAGCTTGGAGACATGAG|AATAGCCTAACATGGCAGACCAGAGACAGCGCTCACTGTCTACCTCTGGGGAGTCATTGTACCACGTCCTTGGGTTGGACAAGAACGCAACCTCAGATGACATTAAAAAGTCCTATCGGAAGCTTGCCTTGAAATATCACCCCGACAAGAACCCCGACAACCCGGAGGCCG 6 3.5280018436474797e-07 0.7140374211658379 0.6857160435859201 Y Y 3.49272035470961 3.72824693801095 3.49272035470961 0 0.994164677352128 0.0 Y 0.614868705240423 N Y 18278 10877 ENSG00000101150 ENSG00000101152 + - 20 20 62522898 62567384 coding utr5p TPD52L2 DNAJC5 62496596 62526518 + + 0.0 62514173 62559688 + - N - - N SA466 2 0.0 1.08333333333333 1 1 1 N Y 0.0 0.0 12 1.08032607707718 1.08032607707718 1.08032607707718 1.08032607707718 4 - - 0.920141776113214 HCT116-unstranded CGHSA0577 0.10 106739 CTCTCCACCCTGGGGGAGCTGAAACAGAACCTGTCCAGGAGCTGGCATGACGTGCAGGTCTCTAGCGCCTATGTGAAAACTTCTGAGAAACTTGGAGAGTGGAATGAGAAAGTGACCCAGTCAGACCTCTACAAGAAGACTCAGGAAACTCTTTCACAGGCAGGACAGAAGACTTCAGCTGCCCTGTCCACAGTGGGCTCTGCCATCAGCAGGAAGCTTGGAGACATGAG|AATAGCCTAACATGGCAGACCAGAGACAGCGCTCACTGTCTACCTCTGGGGAGTCATTGTACCACGTCCTTGGGTTGGACAAGAACGCAACCTCAGATGACATTAAAAAGTCCTATCGGAAGCTTGCCTTGAAATATCACCCCGACAAGAACCCCGAC 7 0.464640433456873 0.7787888776256129 0.7861723922597601 Y Y 3.49272035470961 3.72824693801095 3.49272035470961 0 0.993687156291692 0.0 Y 0.00888353779571127 N Y 18278 10877 ENSG00000101150 ENSG00000101152 + - 20 20 62522898 62567384 coding utr5p TPD52L2 DNAJC5 62496596 62526518 + + 0.0 62514173 62559688 + - N - - N SA466 2 0.0246913580246914 1.14285714285714 1 1 1 N Y 0.0 0.0246913580246914 7 1.36569522951266 1.1007095879654298 1.36569522951266 1.1007095879654298 4 - - 0.959915158870352 HCT116-unstranded CGHSA0577 0.10 43063 CGAGGGAGCTCCCGGGAAGAGTCCGGAGGAGATGTACATTCAGCAGAAGGTCCGAGTGCTGCTCATGCTGCGGAAGATGGGATCAAACCTGACAGCCAGCGAGGAGGAGTTCCTGCGCACCTATGCAGGGGTGGTCAACAGCCAGCTCAGCCAGCTGCCTCCGCACTCCATCGACCAGG|TTAACAAGCACAAGCCCTGGCTGGAGCCCACCTACCACGGCATAGTCACAGAGAACGACAACACCGTGCTCCTCGACCCCCCACTGATCGCGCTGGATAAAGATGCGCCTCTGCGATTTGCAGGTGAGATTTGTGGATTTAAAATTCAC 8 1.0 0.5373977515099609 0.887179300051736 Y Y 3.28183900123616 3.41848849077886 3.28183900123616 0 0.993308990024683 0.0 Y 0.0 N Y 1094 16482 ENSG00000178585 ENSG00000171603 + - 1 1 9970394 9884584 coding coding CTNNBIP1 CLSTN1 9908334 9789084 - - 0.0 9931245 9833452 - + N - - N SA466 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 8 1.05994256618893 0.971614019006519 1.05994256618893 0.971614019006519 4 - - 0.9839413413899648 HCT116-unstranded CGHSA0344 0.10 67253 CTTGGGCTCCGCAATGTCAGTTCTCTTCCTCCCAAGTCCCCACCTCTTAGGCCAGTGCTTGAAACAGCCAGAGGAGAAAGCAAGTGTCTCTGCCAACGTGTGTTCTGCCTAGGGAGACAGGGAGCTGGCTTGGGGCTGTGTAGTCCCAACAGGCAGCTGCCAGCCCAGGATGCCTGACTCTGCTCTTGTCTCTGTCCAGCTGCTGTGATATTAACCGTGGAGT|CTTTGCCATCCTGGGCCATGCAACCTGTAGCTCTCGGCCTCTTCTGTCTCCTTTCAGGCTGAGTCTCTGAATCTGTCTCCATTTGTGACTCTGGTTTCCATGGGATACATAGATGTGGAGCCTCAGGAGGGCAGGGGTAGTGTGATCAGTGTCAGGCGCCCCAAAGCATTTATTCTGTGCCAGGCCCTG 8 0.6981663610171761 0.848815423150953 0.340182288202893 Y Y 3.72824693801095 3.46977054206091 3.46977054206091 0 0.0 0.0 Y 0.0 N N 234 3068 ENSG00000135740 ENSG00000196155 + - 16 16 67306093 67323402 coding utr5p SLC9A5 PLEKHG4 67271586 67311413 + + 0.0 67300014 67311497 + - N 0.240816881475893 0.030102530949815 N SA466 1 0.136612021857924 1.0 1 0 1 N Y 0.0 0.136612021857924 11 1.29095568958908 1.2433941641831698 1.29095568958908 1.2433941641831698 4 0.636363636363636 0.181818181818182 0.935981431138292 HCT116-unstranded 0.10 82527 ATGTCTCCGTTTTCATCTTCCAGTGATGCCTGAAAACTCACCATCTGAAAGGGAATCAGGCCTGTAGCTCGGATATGCACTGGCTCATCAACAAGTGCACTCACAGGGGTAGCTGTCAACTGGATCATTTTTTTAGTGTGGCACCTGGGATGATTCTTCAGGAATATCTTCAGCAAAACCTCAAAACCTG|AATCGAGACCAAAATTCTCTACATGGTGTCCCTGAGACTGTCCACATGAAGACTCTTCTGGTAATGCCCGACACAGATCGCGCCGCCATCTTCGATGAGATCCACGGGCCTGAGCGCAGCCTTCAGCCAGCAGTGACGCGCCCA 5 1.0 0.993533043045354 0.628807653891715 Y Y 3.50848272165904 3.62295434849776 3.50848272165904 0 0.0 0.0 Y 0.0 N Y 149 778 ENSG00000136881 ENSG00000136897 - + 9 9 104145801 104160896 utr5p coding BAAT MRPL50 104122699 104149915 - - 0.0 104133745 104160783 + - N - 0.318914653611419 N SA466 2 0.0 1.3636363636363602 1 4 2 N Y 0.0 0.0 11 1.05314806255951 1.01238104078302 1.05314806255951 1.01238104078302 4 - 15.1818181818182 0.980661383921384 HCT116-unstranded 0.10 109760 AAGAATAAAAAAGGAATTGCAGTGCAACAAAGTACGTGAAAATCAGGTTTCAATAGAATGTGACACAACGTGCAAGGAAATGAAGCGGAAAGCATCTGAGATAAAAGAAGCAGAAGCCAAAGCTGCTCTTGAAGAAGAAAAACGAAGACAACAGG|TCTTGAGAGCTGATGACAATAACATGGGCAATGGCTGCTCTCAGAAGCTGGCGACTGCTAACCTCCTCCGGTTCCTATTGCTGGTCCTGATTCCATGTATCTGTGCTCTCGTTCTCTTGCTGGTGATCCTGCTTTCCTATGTTGGAACATTACAA 8 0.988478898215215 0.6456858168601121 0.8568481232286859 N Y 3.24061960172077 3.48271113610543 3.24061960172077 0 0.9935691318327968 0.0 Y 0.9228295819935692 N Y 2062 150 ENSG00000170448 ENSG00000145244 + - 4 4 47916653 47840123 coding coding NFXL1 CORIN 47849257 47596015 - - 0.0 47853112 47809064 - + N - - N SA466 1 0.0 1.0 1 0 1 Y N 0.0 0.0 7 1.0395590553006802 0.95123050811827 1.0395590553006802 0.95123050811827 4 - - 0.9813074997541228 HCT116-unstranded CGHSA0792 0.10 104321 CATGCATTGGAAATAATAGCGCTGCAGCTGTGTCAATGTTGAAACAAGACTATAAAGAAGGAGAAATGACCTTGAAGTCAGCACTTGCTTTAGCTATCAAAGTACTAAATAAGACCATGGATGTTAGTAAACTCTCTGCTGAAAA|AGGATTATCTGAACCTTCTTCTATTGCAAAACATGAAGATAGTTTGCTTAAGGATTTATTTCAAGACTACGAAAGATGGGTTCGTCCTGTGGAACACCTGAATGACAAAATAAAAATAAAATTTGGACTTGCAATATCTCAATTGGTGG 5 0.32251807926968395 0.7891683288493561 0.7041211586106421 Y Y 3.5167965230840297 3.5827145855897897 3.5167965230840297 1 0.0 0.0 Y 0.0 N Y 9417 1112 ENSG00000041357 ENSG00000169684 + - 15 15 78841604 78887611 coding intron PSMA4 CHRNA5 78832747 78857862 + + 0.0 78839040 78873153 + - N - 0.752141983302127 N SA466 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 6 0.9784085226359353 1.0055865371536 1.0055865371536 0.9784085226359353 4 - 11.8333333333333 0.973905415600953 HCT116-unstranded 0.10 122479 AACTTCCGCTTCCGGTTCCTAGCGTTAACTGCGACCGGGGTTCAGCGCTCGGGTGAGGAGCTGGTGGCGTCGGCAGGTTCGAGGCGATTCG|AGGCCGAGTGTACTACTTCAACCACATCACTAACGCCAGCCAGTGGGAGCGGCCCAGCGGCAACAGCAGCAGTGGTGGCAAAAACGGGCAGGGGGAGCCTGCCAGGGTCCGCTGCTCGCACCTGCTGGTGAAGCACAGCCAGTCACGGCGGCCCTCGTCCTGGCGGCAGGAGAAGATCACCCGGACCAAGGAGGAGGCCCTGGAGCTGATCAACGGCT 17 1.0 0.33201423661567 0.8896574273500699 N Y 3.36819965647335 3.77530342425761 3.36819965647335 0 0.0 0.0 Y 0.0 N Y 4316 2831 ENSG00000198258 ENSG00000127445 + - 19 19 9940791 9960358 utr5p coding UBL5 PIN1 9938568 9945933 + + 0.0 9938660 9949112 + - N - - N SA466 2 0.0 1.0625 1 1 1 N N 0.0 0.0 16 0.5911218157592111 0.9580250117476872 0.9580250117476872 0.5911218157592111 4 - - 0.975002339277623 HCT116-unstranded 0.10 121686 GTGTGGAGTAGCCGGGGTGGCGGAATGACTTCGAGGCCTTGATCCTCTGAGCTCTCCTGTCGCCCAGCGTATCACTGCCCAGGTGCACGGTGTACTCATTCATCTTGCAGTGGGCGGCAGTGAGCACCCAGCGCTCATTGACCAGGACGCCTCCGCAGTGGAGCTGATTGCCACTGAGCAGGGCCACCTGCCATGGGTGGGAGCCTCTTGCACATGGGGCGCCATCAATAATCTTGTCACCCTGGGCT|GCCCAGGCTCCCCCCAGCAAGAGCAGGAACATCCACGTCTTGGCCGCACGAGGTCGGGGGCGTCCCATGGTGAGGTCTGGGAAATGGAGAGGGCGGGGCCGGTAAACAGGAAGGAGGAGCCTGAGCTCCCAGTTCTGGATTTG 42 0.8855403061546129 0.17623576247146394 0.334398098020902 Y Y 3.44615838200292 3.30232144676095 3.30232144676095 0 0.993024832310547 0.0 Y 0.0 N Y 1909 448 ENSG00000169035 ENSG00000129455 - + 19 19 51487320 51504958 coding coding KLK7 KLK8 51479729 51499264 - - 0.0 51485170 51504354 + - N - 1.79805854218284 N SA466 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 42 1.34531171862441 1.01917554441243 1.34531171862441 1.01917554441243 4 - 3.83333333333333 0.905069756746575 HCT116-unstranded 0.10 72151 GAGAGTAAAAGGGGAAATACAGTTTTGAAAGATCTGAAATTGATCAGTGATAAAATTGGATCACTTGGATTAGGAACTGGAGAAGATGATGACTATGTTGATGATTTTAATAGTACCAGCCATCGCTCAGAGAAAAGTGAGATAAGTATTGGTGAAGAGATAGAAGAAGACCTTTCTGTGGAAATAGATGACATCAATACCAGTGATA|AGAGTCACCTCTACTTTCCTGCTACCGCTGCCTGTGAGCTGAAGGGGCTGAACCATACACTCCTTTTTCTACAACCAGCTTGCATTTTTTCTGCCCACAATGAGCGGGGAATCAATGAATTTCAGCGATGTTTTCGACTCCAGTGAAGATTATTTTGTGTCAGTCAATACTTCATATTACTCAGTTGATTCTGAGATGTTACTGTGCT 5 0.7640715676424108 0.260047966893204 0.50690057593385 Y Y 3.54040868314203 3.3995031233403905 3.3995031233403905 0 0.976019184652278 0.0 Y 0.0 N Y 625 69 ENSG00000213066 ENSG00000112486 + - 6 6 167455906 167553184 coding utr5p FGFR1OP CCR6 167412670 167525295 + + 0.0 167447459 167549526 + - N - - N SA466 1 0.0 1.0 1 0 1 N Y 0.0 0.0 8 1.41325675491857 1.20262714240667 1.41325675491857 1.20262714240667 4 - - 0.966172040720366 HCT116-unstranded CGHSA0270 0.10 122488 AAGCCAAGGCCACAAGCTCAGCGACAACGGCTGCTGCCCCGACACTGCGGCGCCTGGCGCTTTCCTCACGGTCTGGGCTTGAGAGGAAGCCGGAGTCCTTGTCTAAAGTCAGCATCATCAAGAGACTGGGCGCAGCTGCCCTTGTGCCCGAGGCCCAGGACAGCCAGGTCACCAGCACCAAGA|ACTGTGCCCTGTCCACGGTGCCTCCTGCATGTCCTGCTGCCCTGAGCTGTCCCGAGCTAGGTGACAGCGTACCACGCTGCCACCATGAATGAGGTGTCTGTCATCAAAGAAGGCTGGCTCCACAAGCGTGGTGAATACATCAAGACCTGGAGGCCACGGTA 2 0.7731934647830129 0.9021331769709808 0.625912709066678 N Y 3.19293127328835 3.11182925285645 3.11182925285645 1 0.0 0.0 Y 0.0 N Y 2152 7790 ENSG00000160392 ENSG00000105221 + - 19 19 40854434 40791443 coding utr5p C19orf47 AKT2 40825443 40736224 - - 0.0 40827935 40771258 - + N - - N SA466 1 0.0 1.0 1 0 2 Y N 0.0 0.0 5 0.828929442788779 0.475615254059135 0.828929442788779 0.475615254059135 4 - - 0.9740886958725268 HCT116-unstranded 0.10 121832 ATCAGAAGGAACAAACTGCGGACATGCCGCCTTTAAGAACTGTAACACTCACCACGAGATTCTGCGGCTTCATTCTTGAAGTCAGTGAGACCAAGAACCCACCAATTCCGGATACATTTTGGTGACCCAGATGGGACTATTACCTATCGCCAAGCGGTGAGACCACTGCCTATCGCTGAGCGGTGAGACTATCACCTATCGCCAAGCA|GTCAACGGCAGGGGTCTAAGGAGTGACTGCCCAACGTGAGGCTTCAAGATGAGCCAATTACCAATTATGCACGGCGTTTCTCCTTCTCTTCCTTCATTCCCATAGAGAATCCCATTCCTATCTCCTTCGCCAGCCCAAGGCAATGGGCCTCTCCCAGCAACTGGGTGGGCAAGTTTTACCTGCTGGATAGTGTTGC 14 1.0 0.8666449238045941 0.481672662030563 Y Y 3.79722016713641 3.58424216889964 3.58424216889964 0 0.994910556815319 0.0 Y 0.0330057949105569 N N 3111 31633 ENSG00000104823 ENSG00000104824 - + 19 19 39322497 39342979 intron intron ECH1 HNRNPL 39306068 39327029 - - 0.0 39314037 39327516 + - N 1.27119564405819 0.34732402279986 N SA466 66 0.5576923076923079 9.55555555555556 1 4 1 N Y 0.5576923076923079 0.0 9 1.39966774765974 1.256983171442 1.39966774765974 1.256983171442 4 69.5555555555556 354.777777777778 0.920653178096371 HCT116-unstranded 0.10 556 CGACTTTCACGATGGCTCGCCCAACCTTACTACCTTCTGTCGGCCCTGCTCTCTGCTGCCTTCCTACTCGTGAGGAAACTGCCGCCGCTCTGCCACGGTCTGCCCACCCAACGCGAAGACGGTAACCCGTGTGACTTTGACTG|GAACGGCCGGTTTGTGGGCGATGCTGACCTTGAAAGACAGAAATTTTCAGATTTGAAACTCAACGGACCCCAGGATCACAGTCACCTTCTATATAGCACCATCCCCAGGATGCAGGAGCCGGGGCAGATTGTGGAGACCTACACGGAGGAGGATCCTGAGGGAGCCATGTCTGTAGTCTCTGTGGAGACCTCAGATGATGGGACCACTCGGC 16 0.13685015876633302 0.950383524194345 0.618108295887615 Y Y 3.3974369838006098 3.48809356209009 3.3974369838006098 2 0.993026636285063 0.0 Y 0.8953995442759491 N Y 5097 16984 ENSG00000213593 ENSG00000198561 + - 11 11 57508445 57587018 coding coding TMX2 CTNND1 57480072 57520715 + + 0.0 57480279 57561482 + - N - - N SA466 2 0.214285714285714 1.2 1 1 1 Y Y 0.0 0.214285714285714 5 1.16865462425959 1.2977501932185 1.2977501932185 1.16865462425959 4 - - 0.92641315433202 HCT116-unstranded 0.10 555 CGTTACGGCCGAAAAGATGGCGGTCTTGGCACCTCTAATTGCTCTCGTGTATTCGGTGCCGCGACTTTCACGATGGCTCGCCCAACCTTACTACCTTCTGTCGGCCCTGCTCTCTGCTGCCTTCCTACTCGTGAGGAAACTGCCGCCGCTCTGCCACGGTCTGCCCACCCAACGCGAAGACGGTAACCCGTGTGACTTTGACTG|GAACGGCCGGTTTGTGGGCGATGCTGACCTTGAAAGACAGAAATTTTCAGATTTGAAACTCAACGGACCCCAGGATCACAGTCACCTTCTATATAGCACCATCCCCAGGATGCAGGAGCCGGGGCAGATTGTGGAGACCTACACGGAGGAG 16 0.0292712595170219 0.950383524194345 0.618108295887615 Y Y 3.3974369838006098 3.48809356209009 3.3974369838006098 2 0.9933960860183052 0.0 Y 0.8084864945308431 N Y 5097 16984 ENSG00000213593 ENSG00000198561 + - 11 11 57508445 57587018 coding coding TMX2 CTNND1 57480072 57520715 + + 0.0 57480279 57561482 + - N - - N SA466 1 0.289655172413793 1.0 1 0 1 Y Y 0.0 0.289655172413793 8 0.7270118883475349 0.985203026265352 0.985203026265352 0.7270118883475349 4 - - 0.956741235094434 HCT116-unstranded 0.10 89885 GCCCGTCCGACTGGAAAGATCTGCCTCTTCTCCAAGAAACTCAACCACTAGTGACAATGACCAGCCTCCTGACTACTCCTTCTCCAAGA|GGTCATCGTGATGTCAGGTCATGAGACCATCCGAGTGCTGGAAGTCGGAGTGGATGCCCAACTCCCTGCTGAGGAAGAGAGCAAAGGACTGGAGGGTGTGGCCGCCGAGGGCTCCCAGAGCGGAGACCCTGCTGAAGCCAGTCAAGCTGCTGGTGAAGCTGGGCCAGACAACCTGGGCTCCTCTGCAGAGGCAACTGTGAAGTCACCC 2 0.3778826796897671 0.3726588333774389 0.625912709066678 Y Y 3.55760534744548 3.50120199000394 3.50120199000394 0 0.865620993891863 0.0 Y 0.0 N Y 1620 308 ENSG00000170545 ENSG00000184271 + - 12 12 51664202 51611477 coding utr5p SMAGP POU6F1 51639133 51580719 - - 0.0 51663029 51598151 - + N - - N SA466 1 0.0 1.0 1 0 1 N Y 0.0 0.0 5 1.03276455167127 0.8696964645652759 1.03276455167127 0.8696964645652759 4 - - 0.963507357726399 HCT116-unstranded 0.10 19448 TTTACACTGTGATTTTGCTTGCCTGATGTTCAAACACCTGGTACACAAACCATCGGAGGAGAGAGTAAGAGAAATAATTATCAATGCTGTTCGGATAGAACAGGAGTTCCTCACTGAGGCCTTGCCTGTGAAGCTCATTGGGATGAATTGCACTCTAATGAAGCAATACATTGAGTTTGTGGCAGACAGACTTATGCTGGAACTGGGTTTTAGCAAGG|TGCTGGGAGACCGTGAAGTGCAAAGCAGATGGAGTCCAGGCCCTCGGGGAGACAGCACGCCAGTGAGGGAGATGGAGACCAATCACCCACCCAGTGTGCGGGGATGAGAAGCTCGGGAAGGTCTGACCAGCCTTACGTCTTGAAAGGGAATCCCCTGCTTCTGCGTGTCAGGTGTTA 40 0.888988763796013 0.368827294913594 0.440672707956052 Y Y 3.51360402781852 3.43105836246279 3.43105836246279 3 0.9943645494492952 0.0 Y 0.447725846030931 N Y 45680 160 ENSG00000171848 ENSG00000163009 + - 2 2 10271545 10351851 coding utr5p RRM2 C2orf48 10262455 10281509 + + 0.0 10269281 10281981 + - N - - N SA466 2 0.561111111111111 1.35135135135135 1 13 1 N Y 0.0 0.561111111111111 37 1.37248973314208 1.22301065329492 1.37248973314208 1.22301065329492 4 - - 0.945046134848538 HCT116-unstranded CGHSA0554 0.10 67485 CAGGTTAGCGACCCCGAGAGTACAGTGGCTGTGGCTTTCACACCAACCATTCCGCACTGCAGCATGGCCACCCTTATTGGTCTGTCCATCAAGGTCAAGCTTCTGCGCTCCCTTCCTCAGCGTTTCAA|GACGGTCCCGGACGCGATGACCCTGAACGGCGGCGGCAGCGGAGCGGGCGGGAGCCGCGGTGGGGGCCAGGAGCGCGAGCGCCGTCGGGGCAGCACACCCTGGGGCCCCGCCCCGCCGCTGCACCGCCGCAGCATGCCGGTGGACGAGCGCGACCTGCAGGCGGCGCTGACCCCGGGTGCCCTGAC 1 1.0 0.79577433566957 0.8679834243360559 Y Y 3.2829255041685297 3.30973015949204 3.2829255041685297 0 0.992212301587302 0.0 Y 0.9766369047619052 N Y 2942 88 ENSG00000166595 ENSG00000166592 + - 16 16 66968326 66959547 coding utr5p FAM96B RRAD 66965959 66955582 - - 0.0 66967517 66959097 - + N - - N SA466 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 5 0.815340435529946 1.1278876024830902 1.1278876024830902 0.815340435529946 4 - - 0.986209398074487 HCT116-unstranded CGHSA0477 0.10 77144 ACAGAGGACTTCTCACTGAATTCTGCAATTTCTCAGCTGATGGGACTCAGCAATGCCCTCTCGCAAGCCTCTCAGAGCGTCATTCTCCACAGCCCCGAGTTTGAGGATGCTTTGTGTGCCCTGATGGTAATGGCTGCTCCACTGGCCCCTCATGTAACCTCAGAGATCTGGGCAGG|AGCCTGTGTGAAATGCAGCAAAGGGGTGTTTGGGGCTGGCCAGGCCTGTCAGGCCATGGGGAACCTCTACCATGACACATGCTTCACCTGTGCAGCTTGCAGCCGGAAGCTGAGAGGAAAAGCCTTTTATTTTGTCAACGGCAAAGTGTTT 1 1.0 0.289689720202864 0.296610300992644 Y Y 3.53039946453785 3.027641603484 3.027641603484 0 0.0 0.0 Y 0.0294580843159427 N Y 5170 8225 ENSG00000011376 ENSG00000144791 + - 3 3 45590913 45727830 intron coding LARS2 LIMD1 45429998 45596886 + + 0.0 45565600 45677642 + - N - - N SA466 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 6 0.971614019006519 0.8968744790829409 0.971614019006519 0.8968744790829409 4 - - 0.926546536808193 HCT116-unstranded 0.10 66559 CCCGGCGCGGGTGGCCGAGGCGTAGCGCTGCGACCCCCGCACCCCTGCGAACATGGCGCTGCGAGTGGTGCGGAGCGTGCGGGCCCTGCTCTGCACCCTGCGCGCGGTCCCGTCACCCGCCGCGCCCTGCCCGCCGAGGCCCTGGCAGCTGGGGGTGGGCGCCGTCCGTACGCTGCGCACTGGACCCGCTCTGCTCTCGGTGCGTAAATTCACAGAGAAACACGAATGGGTAACAACAGAAAATGGCATTGGAACAGTGGGAATCAGCAATTTTGCACA|GCAAGAAGATGTTAAAAACTTTAAGCAAGCATCACAGTAATGGATCTCTGTCAGAAAAATGAGACTGACTTAGAAAATGCTGAAAATAATGAAATTCAGTTCACAGAAGAAACA 5 0.0018150766230795301 0.993533043045354 0.561865053986848 Y Y 3.25360004855864 3.2793317813189 3.25360004855864 1 0.9912503339567192 0.0 Y 0.0 N Y 5495 703 ENSG00000140905 ENSG00000166455 + - 16 16 81130008 81110872 coding utr5p GCSH C16orf46 81115566 81087102 - - 0.0 81124206 81097598 - + N - - N SA466 4 0.3641025641025639 2.88888888888889 2 9 2 Y Y 0.00649350649350649 0.3641025641025639 9 1.0463535589300998 1.18903813514784 1.18903813514784 1.0463535589300998 4 - - 0.916093650276756 HCT116-unstranded 0.10 74485 TAACGACCCAGCACCTCTTAATTCACCCAAGCTGAAGCCAAATGCGAACCCTGAGCAGCCTGGATTCATTGACGAGCCAGCACCACTGAACCCACCCAAACCAAAGCCAAATCCAAACCCCAAGCAGCCTGATTCCACCGGGGATGACTTTGATTTCACAGATGTTTCTTCATGGTGAACGAAACAA|TGGTGGTTTCGATTTATCCGATGCCCTTCCTGACAATGAAAACAAGAAACCCACTGCAATCCCCAAGAAACCCAGTGCTGGGGATGACTTTGACTTAGGAGATGCTGTTGTTGATGGAGAAAATGACGACCCACGACCACCGAACCCACCCAAACCGATGCCAAATCCA 3 0.71338155307944 0.549989587186145 0.866869200736125 Y Y 3.3325519910647405 3.54872248456702 3.3325519910647405 0 0.0 0.0 Y 0.0 N Y 225 1659 ENSG00000223773 ENSG00000002586 + - X X 2575270 2659350 intron coding CD99P1 CD99 2527389 2609220 + + 0.0 2544683 2632463 + - N - - N SA466 1 0.0 1.0 1 0 1 N Y 0.0 0.0 5 1.07353157344776 1.11429859522426 1.11429859522426 1.07353157344776 4 - - 0.9547412679963242 HCT116-unstranded 0.10 72379 TCTTATCATCTTGCAGAACTCGTCCCTGGTAAATGAGCCGTTGTTTTTCAGATGGGATGCTGACAGAGGCAGCAATGTGCTCCTTAAACTCTTTTACATTCATCTGGGCCCCCACAATAAAGGTACGAGTTTGAGAGTCCAAGGTCTTCACCAACACCTCCAAGCTGTCAGGCTCCTCCACAGCGGTACTGGTACTATCATTAGGCTCCATGGCCGACAGGTCT|CAAGGCCACACCCCAAGGTGTCCCAGAAACTGGGGAGGCAGTGCTCCATCCAATAAAGCGGGCAGGAAGGTGGCCCCAGGTCCTAGGTGCTCCTGGATCGTGTAGTCTTTAACTGCTGCCCCAAGGGACCTCAAGGAATAGGAATTCTCTTTGTTAGGAGGTGGAATGAAAGTGTCCA 14 0.984425639892489 0.475427040489929 0.33400178759204 Y Y 3.762733552573681 3.18871505582277 3.18871505582277 4 0.0 0.0 Y 0.0 N N 31343 736 ENSG00000204463 ENSG00000204439 - + 6 6 31620482 31628549 utr5p intron BAG6 C6orf47 31606805 31626075 - - 0.0 31619553 31628098 + - N - 0.774337197277955 N SA466 1 0.0 1.0 1 0 1 N Y 0.0 0.0 17 1.50158530210098 1.18224363151842 1.50158530210098 1.18224363151842 4 - 6.76470588235294 0.939761110994073 HCT116-unstranded 0.10 67407 TCTGCGCAGTGTGCTGCAGCCAGGCCGCATCTTGCTGTGGTTTGGAACCTTCTTGTGTCCTGTTCAACTCAGAAACCCCACAGATTCTTGCTTTTCTGCAGGCTTGGCCTCTAGGTTGGCTGGGTTGCAGAGCAGTCTTGCTTCTAGGTTGTCATGAGCTGCGTGGCTTCCAGAGCT|CTGGTCACTGCGCGCACTTATCTCAGGTGGCGGGGCCCGTGGACGGCGGCGACCTGGATCCTGTGGCCTGCTTCCTGAGCTGGTGCCGGCGGGTGGGGCTGGAGCTGAGTCCCAAGGTGAGCGAGCGAGCCGGCGGGCGGAGGACCCGCGGCGGGGC 4 0.993861699971414 0.702209256525667 0.37272193537969 Y Y 3.5844100027689803 3.46977054206091 3.46977054206091 0 0.0 0.0 Y 0.0 N N 421 1379 ENSG00000103034 ENSG00000103037 + - 16 16 58547532 58554431 intron intron NDRG4 SETD6 58496750 58549383 + + 0.0 58544826 58549669 + - N 0.191056004287663 0.169090566975766 N SA466 1 0.0818181818181818 1.0 1 0 1 N Y 0.0 0.0818181818181818 5 0.774573413753449 0.7473953992357841 0.774573413753449 0.7473953992357841 4 6.6 15.6 0.987494991408843 HCT116-unstranded 0.10 42656 AACGATGTCTTGAGAGGGGAAAGAGTAGTGGTAGGAGTGATGACAACAGAGAGAGCTTGGAAAAGAGAATTCAGACCTACCTTCAGTCAACAAAGCCAATTATTGACTTATATGAAGAAATGGGGAAAGTCAAGAAAATAGATGCTTCTAAATCTGTTGATGAA|ATTTCGAGTCTTCATTTCTGTCTTGCCTGGAGCACTTGCTAAGGGACTGGCCCAGAAGTACTCGGTGAGCAATGAAGCCTGAACTGAGGCCAGGAGAACTGAAGGAGGGATGGATCTGGGACCCATGTGGAATTGACGGGACTTGGCACTTGCCTGAATGTGGAGAGTGAGTGGGGAGGAAGGAGCCCAAGATGATGATAAC 10 0.8497486553564308 0.688316366440371 0.642391283390408 N Y 3.25360004855864 3.4378445805779303 3.25360004855864 6 0.0 0.0 Y 0.0 N N 4086 128 ENSG00000162368 ENSG00000186790 + - 1 1 47844511 47883723 coding upstream CMPK1 FOXE3 47799469 47881744 + + 0.0 47840965 47879778 + - N - - N SA466 2 0.87 1.2 1 1 2 N N 0.0 0.87 5 0.9648195153771032 1.20262714240667 1.20262714240667 0.9648195153771032 4 - - 0.946312472276377 HCT116-unstranded 0.10 41960 AGTGGCTTTGCTGGGGTTTACTTTGAGAAAATCTTAAAAGAAACAAAACAATCAGTGTGGATAAGAAATATTCAGCTTGGTTTCTTTGGAAGTATATTTGGATTAATGGGTGTATACATTTATGATGGAGAACTGGTATCAAAGAATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTGGTATTACATGAAACCTTTCCTAAACATACA 4 0.382581501572031 0.4793619938756121 0.34243792249841104 N Y 3.73233517440054 3.6669556681247206 3.6669556681247206 0 0.0 0.0 Y 0.0030769230769232 N Y 1204 1874 ENSG00000117620 ENSG00000156875 + - 1 1 100492535 100548933 coding coding SLC35A3 HIAT1 100435345 100503653 + + 0.0 100480976 100515465 + - N - - N SA466 1 0.0 1.0 1 0 1 Y N 0.0 0.0 5 1.15506561700076 0.720217384718119 1.15506561700076 0.720217384718119 4 - - 0.9385772205448728 HCT116-unstranded 0.10 82523 GGCCAGGGCAGGCACATGGACCGGGTGCTCGGCGGCCGCACCTACCGCACGCTGCTGCAGCTCACCAGGATGTACCCCGGCCTGCAGGTGTACACCTTCACGGAGCGCATGATGGCCTACTGCGACCAGATCTTCCAGGACGAGACGGGCAAGAACC|GGTGTGAACCCACATCCCTGCCCCCAGGGCCACCTGCAGGACGCCGACACCTACCCCTCAGCAGACGCCGGAGAGAAATGAGTAGCAACAAAGAGCAGCGGTCAGCAGTGTTCGTGATCCTCTTTGCCCTCATCACCATCCTCATCCTCTACAGCTCCAACAGTGCCAATGAGGTCTTCCATTACGGCTCCCTGCGGGGCCGTAGCCG 4 0.8309437767896479 0.939048416642165 0.258070441538111 Y Y 3.6272104187567 3.18768198605288 3.18768198605288 1 0.0 0.0 Y 0.0 N Y 3849 1674 ENSG00000136840 ENSG00000160408 + - 9 9 130679317 130667687 coding utr5p ST6GALNAC4 ST6GALNAC6 130670165 130647600 - - 0.0 130674547 130658611 - + N - - N SA466 2 0.0 1.33333333333333 1 2 1 Y Y 0.0 0.0 6 1.02597004804185 1.16186012063017 1.16186012063017 1.02597004804185 4 - - 0.928399603306132 HCT116-unstranded 0.10 126443 CAAATATTAACAGTAATGGCAGCATTTGTCTTGATATTCTACGATCACAGTGGTCTCCAGCACTAACTATTTCAAAAGTACTCTTGTCCATCTGTTCTCTGTTGTGTGATCCCAATCCAGATGATCCTTTAGTGCCTGAGATTGCTCGGATCTACAAAACAGATAGAGAAAA|AGTGAAGACATTTCCACCTGGACACCTGACCATGTGCCTGCCCTGAGCAGCGAGGCCCACCAGGCATCTCTGTTGTGGGCAGCAGGGCCAGGTCCTGGTCTGTGGACCCTCGGCAGTTGGCAGGCTCCCTCTGCAGTGGGGTCTGGGCCTCGGCCCCACCATGTCGAGCCTCGGCGGTGGCTCCCAGGATGCCGGCGGCAGTAGC 3 0.7730069854871601 0.7874797235740949 0.4704588518622971 Y Y 3.58424216889964 3.47080361183081 3.47080361183081 1 0.994201427340962 0.0 Y 0.0 N Y 5521 1800 ENSG00000131508 ENSG00000171604 + - 5 5 139008018 139063467 coding utr5p UBE2D2 CXXC5 138906016 139026884 + + 0.0 139003046 139059949 + - N - - N SA466 3 0.0628571428571429 1.28571428571429 1 1 1 Y Y 0.0 0.0628571428571429 7 1.11429859522426 1.18224363151842 1.18224363151842 1.11429859522426 4 - - 0.9568446779111558 HCT116-unstranded 0.10 98305 ACAACCTCGCTTCATTGTGTATAGTTATAAATATCAACATGATGATGGAAGAGTTTCATATCCTCTGTGCTTTATTTTCTCCAGTCCTGTTGGATGTAAGCCTGAACAACAGATGATGTATGCTGGAAGTAAGAATAAGCTAGTCCAGACAGCTGAACTAACCAAG|ATTATAGCATTTGATGAGCTGAAGACTGATTACAAGAATCCTATAGACCAGTGTAATACCCTGAATCCCCTTGTACTCCCAGAGTACCTCATCCACGCTTTCTTCTGTGTCATGTTTCTTTGTGCAGCAGAGTGGCTTACACTGGGTCTCAATATGCCCCTCTT 1 0.78255976252642 0.43747977240578495 0.519366142796752 N Y 3.4309786568760896 3.3733608154261803 3.3733608154261803 1 0.0 0.0 Y 0.0 N Y 4438 7129 ENSG00000197045 ENSG00000100528 + - 14 14 54955914 54908149 coding coding GMFB CNIH 54941202 54893654 - - 0.0 54946504 54903155 - + N - - N SA466 2 0.0 1.2 1 1 1 Y N 0.0 0.0 5 0.7473953992357841 0.733806391976952 0.7473953992357841 0.733806391976952 4 - - 0.9725478395143192 HCT116-unstranded 0.10 80250 AGCCTGGTGCCCATCTGTGTGCTGCGCCGGCCAGGAGCTAACCATGAAGGCTCAGCTTCCCGCCAGAAAGCCCTGAGCCTAGTAAGCTGTTTCGCGGGGGGCGTCTTTTTGGCCACTTGTCTCCTGGACCTGCTGCCTGACTACCTGGCTGCCATAGATGAGGCCCTGGCAGCCTTGCACGTGAC|GTTACAGGCCCAAAAACTGCGACTGGCATACACAAGGAGCTCTCATTATGGTGGGTCTCTGCCCAATGTTAACCAGATTGGCTCTGGCCTGGCCGAGTTCCAGAGCCCCCTCCACTCACCTTTGGATTCATCTCGGAGCACTCGGCACCATGGGCTGGTGGAACGGGTGCAGCGAGATCCTCGAAGAATGGTGTCCCCACTTCGCCGATACACCCGCCACATTGACAGCTCTCCCTATAGTCCTGCCTACTTATCTCC 11 0.21197207709154609 0.954913389340528 0.261645997169601 Y Y 3.5204207511572005 3.50744965188915 3.50744965188915 0 0.8004504504504499 0.0 Y 0.228767957146335 N Y 4706 2059 ENSG00000143570 ENSG00000160741 + - 1 1 153940188 153931101 coding coding SLC39A1 CRTC2 153931575 153920145 - - 0.0 153934696 153927642 - + N - - N SA467 1 0.0 1.0 1 0 4 Y Y 0.0 0.0 16 1.35064036898201 1.5781166416526595 1.5781166416526595 1.35064036898201 4 - - 0.966517453610558 HCT116-unstranded CGHSA0331 0.50 80688 GTCTGAGAGTCACTGGAGCTACCAGAAGCATCATGGGGCCCTGGGGAGAGCCAGAGCTCCTGGTGTGGCGCCCCGAGGCGGTAGCTTCAGAGCCTCCAGTGCCTGTGGGGCTGGAGGTGAAGTTGGGGGCCCTGGTGCTGCTGCTGGTGCTCACCCTCCTCTGCAGCCTGGTGCCCATCTGTGTGCTGCGCCGGCCAGGAGCTAACCATGAAGGCTC|AGGGGACTCCTCTCCAGGTTTCTCTAAGGAGATTGCAGCAGCCCTGGCCGGAGTGCCTGGCTTTGAGGTGTCAGCAGCTGGATTGGAGCTAGGGCTTGGGCTAGAAGATGAGCTGCGCATGGAGCCACTGGGCCTGGAAGGGCTAAACATGCTGAGTGACCCCTGTGCC 6 1.0 0.560186137219421 0.0841673921693852 Y Y 3.71145150129163 3.5184919402632304 3.5184919402632304 15 0.994098130055196 0.0 Y 0.0 N Y 4706 2059 ENSG00000143570 ENSG00000160741 + - 1 1 153940188 153931101 coding coding SLC39A1 CRTC2 153931575 153920145 - - 0.0 153935005 153920805 - + N - - N SA467 2 0.0 1.125 1 1 4 Y Y 0.0 0.0 8 1.28666266729339 1.15159863039519 1.28666266729339 1.15159863039519 4 - - 0.976087050760217 HCT116-unstranded CGHSA0331 0.50 81239 GGTGCTCACCCTCCTCTGCAGCCTGGTGCCCATCTGTGTGCTGCGCCGGCCAGGAGCTAACCATGAAGGCTCAGCTTCCCGCCAGAAAGCCCTGAGCCTAGTAAGCTGTTTCGCGGGGGGCGTCTTTTTGGCCACTTGTCTCCTGGACCTGCTGCCTGACTACCTGGCTGCCATAGATGAGGCCCTGGCAGCCTTGCACGTGAC|GTTACAGGCCCAAAAACTGCGACTGGCATACACAAGGAGCTCTCATTATGGTGGGTCTCTGCCCAATGTTAACCAGATTGGCTCTGGCCTGGCCGAGTTCCAGAGCCCCCTCCACTCACCTTTGGATTCATCTCGGAGCACTCGGCACCATGGGCTGGTGGAACGGGTGCAGCGAGATCCTCGAAGAATGGTGTCCCCACTTCGCCGATACACCCGCCACATTGACAGCTCTCCCTATAGTCCTGCCTACTTATCTCCTCCCCCAGAGTCTAGCTGGCGAAGGACGATGG 11 3.5984963323612703e-07 0.954913389340528 0.261645997169601 Y Y 3.5204207511572005 3.50744965188915 3.50744965188915 0 0.995107942166766 0.0 Y 0.14388987918399698 N Y 4706 2059 ENSG00000143570 ENSG00000160741 + - 1 1 153940188 153931101 coding intron SLC39A1 CRTC2 153931575 153920145 - - 0.0 153934696 153927642 - + N - - N SA467 1 0.0 1.0 1 0 4 Y Y 0.0 0.0 5 1.33642310194009 1.1658158974371 1.33642310194009 1.1658158974371 4 - - 0.9514365004191492 HCT116-unstranded CGHSA0331 0.50 240558 CCTCCTCCTCCTCAGCCGCCTCGTCCCCGTCCTCGGGCCGCGCCCCCGGCGCCGCGCCCTCCGCCGCCGCCAAGAGCCACCGCTGTCCCTTCCCGGACTGCGCCAAAGCCTACTACAAGTCCTCGCACCTAAAGTCGCACCTGCGGACGCACA|CAGTGAAGGCTGCACCAGACGCATCTGTACCTGCCCTGTGCGGTCTGTCTGTGGCACGGGTTCTGAGGATTCCGAGTCTGAAGGTGGTGGTGTTGAAGCTGCATGGGATGGTTGCGAAACTGCTCTGCAAGATCTCGGCCTGTCCATGGCCCCCTCAGTGACGGGCAAGGGAGATTTCACCCCATCTAGAGCCCCATTTGCCATCTAAGGGGAT 16 0.8840255810129641 0.762582234022949 0.461214417640975 Y Y 3.5733677143949105 3.5978451103534503 3.5733677143949105 0 0.0 0.0 Y 0.0 N Y 8049 4969 ENSG00000129911 ENSG00000079313 + - 19 19 1863567 1848452 coding intron KLF16 REXO1 1852399 1815248 - - 0.0 1863040 1830865 - + N - 7.91458677087856 N SA467 1 0.455128205128205 1.0 1 0 1 N Y 0.455128205128205 0.21134020618556693 12 1.1089468292694398 1.30798856785626 1.30798856785626 1.1089468292694398 4 - 5.41666666666667 0.972835903783584 HCT116-unstranded 0.50 240561 CCCGGAGCCGCCCCGGGGGGCGCCTCGCCCGCCTCCTCCTCCTCAGCCGCCTCGTCCCCGTCCTCGGGCCGCGCCCCCGGCGCCGCGCCCTCCGCCGCCGCCAAGAGCCACCGCTGTCCCTTCCCGGACTGCGCCAAAGCCTACTACAAGTCCTCGCACCTAAAGTCGCACCTGCGGACGCACACA|GGGCTGGGTTACGACCCCTACAACCCTGAGCTGCCCAAGCCCCCCGCGCAGAGGGAGAATGGCACCCTGGGCCTGGGGGAGGAGCCGCGCCCGGATGTGCTGGAGTTGGAGCTGGTCAACCAGGCCATCGAGGCCGTGCGCAGTGAGGTGGAGCTGGAGCAGCGGCGCTACCGGGAGCTGCTGGAGACGACCCGTGAGCACCGCTCCGCCGAGGCCCCCGCCCTGGC 39 0.5829468535577029 0.7143023639650609 0.637957088748728 Y Y 3.5246463161926003 3.3576612292090497 3.3576612292090497 1 0.0 0.0 Y 0.0 N Y 8049 4969 ENSG00000129911 ENSG00000079313 + - 19 19 1863567 1848452 coding intron KLF16 REXO1 1852399 1815248 - - 0.0 1863040 1828630 - + N - - N SA467 1 0.384615384615385 1.0 1 0 1 Y Y 0.384615384615385 0.0721153846153846 39 1.3861835365867998 1.47859577235925 1.47859577235925 1.3861835365867998 4 - - 0.9731120141373358 HCT116-unstranded 0.50 152102 CTGCAGTGGTCCCTCCAATGTGTTTGCTGCCAAATTCACATTATGAGCAAGTCATGACTGCATTTGGAGGCAAAGGGTATTTTGTACAAACACCAGAAGAACTCCAAAAATCCCTGAGGCAGAGCCTAGCAGACACAACTAAACCTTCTCTTATCAACATCATGATTGAGCCACAAGCCACACGGAAGGCCCAG|CCCTTCCCAGCCTGGATCAGAAGAAGCGTGGTGGCCACAAAGCATGCTGCCTGCTGACGCCTCCTCCACCACCACTGTTCCCACCACCATTCTTCAGAGGTGGCCGAAGTCCGGTGAGTACTTTGGGATTTATGAGAGGAAAAAAAGTGCAGGCTACTCAGTGCACACCACGCAGCCCCACCTGCCTGCCCCACTCCAC 6 1.0 0.504250806155857 0.439172918254024 Y Y 3.4120729950243103 3.63552422018169 3.4120729950243103 0 0.0 0.0 Y 0.0 N Y 771 284 ENSG00000131373 ENSG00000206561 + - 3 3 15643338 15563258 coding coding HACL1 COLQ 15602211 15491640 - - 0.0 15604865 15531144 - + N - 8.17877286857168 N SA467 1 0.0 1.0 1 0 1 N Y 0.0 0.0 9 1.15870726391614 1.18714179799998 1.18714179799998 1.15870726391614 4 - 0.111111111111111 0.9858129662067492 HCT116-unstranded 0.50 175836 TGACATCTCCATCCTCCCAACTGGTGCAAGTGTGTGGAAGGCATGGATGCAGTCAATATTGAAAGAGATCACATTCTAGGAGTGTAGTGATTATAGCATGTTCCTGCATGCTCTGGGTGAGATTTGCATTTTTGTTCATCAACAATGAAGCTCAGTATCATTCTTTGAAAGATTCACTGGACACCACTCTTCAAGGGCAGCAAGAAAGATGATACA|AGATAACCACTGGACAGCTTAAGCCTCGTGATGACAGTCTTCTTTTGATGTGACAGGAATTACACCTGTTTGGATGAAATCCAAAACCCATATCATAGAAAAATTCACTAT 17 0.64575834508004 0.23875150364546305 0.403526571666521 N Y 3.5010341561346 3.86207465464874 3.5010341561346 0 0.0 0.0 Y 0.0 N N 175 1221 ENSG00000258088 ENSG00000179941 - + 12 12 76092596 76742222 intron downstream RP11-114H23.2 BBS10 76087790 76738254 - - 0.0 76088755 76726584 + - N - - N SA467 1 0.7184466019417479 1.0 1 0 2 N N 0.7184466019417479 0.0 5 0.732189252658667 0.48338707942514 0.732189252658667 0.48338707942514 4 - - 0.943844485898028 HCT116-unstranded 0.50 175838 GTGTGGAAGGCATGGATGCAGTCAATATTGAAAGAGATCACATTCTAGGAGTGTAGTGATTATAGCATGTTCCTGCATGCTCTGGGTGAGATTTGCATTTTTGTTCATCAACAATGAAGCTCAGTATCATTCTTTGAAAGATTCACTGGACACCACTCTTCAAGGGCAGCAAGAAAGATGATACA|ATGATCACAAGGTCCCACAATAGGCTGTCTGCAAGCTGAGGAGCAAGAAGAGCCAGTCTGAGTCCCAAAACTGAAGAACTTGGAGTCTGAGGCTCAAGGGTAGGAAGCATCCAGCATGTGAGAAAGATGTAGGCTGGGAGGCTGGGCCCGTCTGTCCTTTTCACATTTTTCTGCCTGCTTTACATTTGCTGGGAGCTGATTAGATTGTGT 12 0.8924167250248979 0.903551011311325 0.604891140199458 N Y 3.5010341561346 3.6272104187567 3.5010341561346 1 0.0 0.0 Y 0.0 N N 175 1221 ENSG00000258088 ENSG00000179941 - + 12 12 76092596 76742222 intron downstream RP11-114H23.2 BBS10 76087790 76738254 - - 0.0 76088755 76732511 + - N - - N SA467 97 1.0 24.1764705882353 1 8 2 N N 0.641304347826087 1.0 17 1.30798856785626 1.48570440588021 1.48570440588021 1.30798856785626 4 - - 0.928817121079952 HCT116-unstranded 0.50 239775 ATGAGCTGTGAGAGGGGCCGGCACCAGAGCCTGCAGTGCCGCAGCCCTGAAGAACAGTGCCTGGATGTGGTGACCCACTGGATCCAGGAAGGTGAAGAAGTCCTGGAGCTTGAAAATCTGCCGCAGAATGGCCGCCAGTGTTACAGCTGCAAGGGGAACAGCACCCATGGATGCTCCTCTGAAGAGACTTTCCTCATTGACTGCCGAGGCCCCATGAATCAATGTCTGGTAGCCACCGGCACTCACG|GGGCAGGACAGGAAGTACAGACAGAGAACGTGACAGTGGCTGAGGGTGGGGTGGCTGAGATCACCTGCCGTCTGCACCAGTATGATGGGTCCATAGTTGTCATCCAGAACCCAGCCCGGCAGACCCTCTTCTTCAATGGCACCCGTGCCTTG 3 0.400181399451185 0.4435802683298761 0.111120068397893 Y Y 3.71041843152174 3.17204760017944 3.17204760017944 0 0.0 0.0 Y 0.0 N Y 3129 1567 ENSG00000011422 ENSG00000105767 + - 19 19 44174502 44143991 coding coding PLAUR CADM4 44150271 44126522 - - 0.0 44156377 44131942 - + N - - N SA467 1 0.0440251572327044 1.0 1 0 1 Y Y 0.0 0.0440251572327044 5 0.8530360225149519 1.13027272983231 1.13027272983231 0.8530360225149519 4 - - 0.911972343623304 HCT116-unstranded 0.50 229749 ATTCAGGTCTCTGAGCGGCCCCTGATGTTCCTGTTGGACACTCCTGGCGTGCTGGCTCCTCGGATTGAAAGTGTGGAGACAGGCCTGAAGCTGGCCCTGTGTGGAACGGTGCTGGACCACCTGGTCGGGGAGGAGACCATGGCTGACTACCTGCTGTACACCCTCAACAAACACCAGCGCTTTGGGT|GGACCAGGTGCTCTGAGGCTGGCGTACAGACACAGCACGTGCGACGGAGTGGTGTTGGTCCGACACCACGGGGCATGGGGATACGTGTGCAACCAGGAGTGGACGCTGGCAGAGGCCTCTGTCGTGTGCAGGCAGCTGGGCTGCGGCCCTGCCGTGGGCGCCCCCAAGTATGTCCCGCTGCCTGGAGAGATGGC 9 0.915545452216465 0.618047531668098 0.549032227391416 Y Y 3.32320511986986 3.53568860456667 3.32320511986986 0 0.0 0.0 Y 0.0 N Y 408 399 ENSG00000148824 ENSG00000214279 + - 10 10 135234811 135337062 coding coding MTG1 RP11-108K14.4 135207598 135267432 + + 0.0 135216277 135269741 + - N - 0.116305166329529 N SA467 1 0.0 1.0 1 0 1 N Y 0.0 0.0 14 1.27955403377243 1.4359439712335 1.4359439712335 1.27955403377243 4 - 0 0.984538836752045 HCT116-unstranded 0.50 239391 CCAGGCATCTGTGTGCTTCGAGGATGTGGCTATGGCATTCACACAGGAGGAGTGGGAACAGCTGGACCTGGCCCAGAGGACACTGTACCGAGAGGTGACACTGGAGACCTGGGAGCATATTGTCTCCCTGGGGCTTTTCCTTTCCAAATCTGATGTGATCTCTCAGCTGGAGCAAGAAGAGGACCTGTGCAGGGCAGAGCAGGAGGCCCCCCGAG|GAACGAGGCCCAGCAAAAAGCAGAGACGGTACAGGGCCAGAAGGATCTGAGAGAGTGTGGCCAGCTTGAGCCCTCAGGAGTCGGCCAGAAGGATCTGAGAGAGTGTGGCCAGCTTGAGCCCCTCGGGAGTCAGCTCCTCCGTCCCCACTGGTAACGTCTTCACCCCTTCAACACGGTGTGAAGGGCCATGTCATGGTTGATCTTCAGTCCCTC 14 0.329111934594419 0.697230971407321 0.27161964556442103 Y Y 3.07717480442437 3.06316128781662 3.06316128781662 0 0.9906322159843292 0.0 Y 0.995316107992164 N N 2532 1108 ENSG00000198131 ENSG00000083842 + - 19 19 58775010 58807254 coding upstream ZNF544 ZNF8 58740070 58790317 + + 0.0 58758160 58788549 + - N - - N SA467 1 0.0 1.0 1 0 3 N Y 0.0 0.0 10 1.45726987179638 1.31509720137722 1.45726987179638 1.31509720137722 4 - - 0.976499948148428 HCT116-unstranded 0.50 239384 AGGGAGGAAATGGAAGCACGTTCTATGCTGGTTCCACCCCAGGCATCTGTGTGCTTCGAGGATGTGGCTATGGCATTCACACAGGAGGAGTGGGAACAGCTGGACCTGGCCCAGAGGACACTGTACCGAGAGGTGACACTGGAGACCTGGGAGCATATTGTCTCCCTG|GGAACCAGTGACCTTCCGGGATGTGGCTGTGGACTTTACCCAGGAGGAATGGGGGCAGCTGGACCCTACCCAGAGGATCCTCTACCGTGACGTGATGCTGGAGACCTTTGGTCACCTGCTCTCCATAGGTCCTGAGCTTCCGAAGCCTGAAGTCATCTCCCAGCTGGAGCAAGGGACCGAGCTATGGGTGGCTGAGAGAGGAA 6 0.7120608797131289 0.9546772529976651 0.240686815277448 Y Y 3.50848272165904 3.60103760561896 3.50848272165904 0 0.0 0.0 Y 0.0 N Y 2532 1108 ENSG00000198131 ENSG00000083842 + - 19 19 58775010 58807254 coding coding ZNF544 ZNF8 58740070 58790317 + + 0.0 58757793 58797083 + - N - - N SA467 1 0.0 1.0 1 0 3 Y Y 0.0 0.0 11 1.10183819574848 1.45016123827542 1.45016123827542 1.10183819574848 4 - - 0.979958258658337 HCT116-unstranded 0.50 240724 ATTCACACAGGAGGAGTGGGAACAGCTGGACCTGGCCCAGAGGACACTGTACCGAGAGGTGACACTGGAGACCTGGGAGCATATTGTCTCCCTGGGGCTTTTCCTTTCCAAATCTGATGTGATCTCTCAGCTGGAGCAAGAAGAGGACCTGTGCAGGGCAGAGCAGGAGGCCCCCCGAG|AAATTTGGAGACAGACAACTTGTCACGCATACAGGGAAAATGACATTTGAAGACAAAGTCAGACATCTACAAGCCAAGGAATGCCAGAGATTGCCAGCAAACCACCAAAAACTAAGGAAAGGGATGGAACATATACTTTCTTGTAGCCCTCAGAAGGAACCAAC 19 0.9408342857425072 0.655840780371467 0.7314177284844251 Y Y 3.07717480442437 3.4106386976703 3.07717480442437 0 0.9939201644923432 0.0 Y 0.9939201644923432 N N 2532 1108 ENSG00000198131 ENSG00000083842 + - 19 19 58775010 58807254 coding upstream ZNF544 ZNF8 58740070 58790317 + + 0.0 58758160 58785732 + - N - - N SA467 1 1.0 1.0 1 0 3 N Y 0.0 1.0 17 1.27244540025147 0.9454482582874052 1.27244540025147 0.9454482582874052 4 - - 0.976492683559995 HCT116-unstranded 0.50 190972 ATAGAAGCAGGAGGTTGATGAGGTGAGCCAAGCAGGCAGCCAGTCTCCAGAGGCTGAAGAAGTCAGGGAAGCGGATTCTGCCCTCAGAGCTCCCAGAGGCAGCCACCCTGCCAACAACACCTGGGCTTTAGCCTCCTGAGACTGATTTTGGACTTCTCATCTCCAGAATT|ATCTAGGAGAATACTAACCGTGAAGATGAAACAAGAATTGTCCATGTACCTTTTCCTGAGAAGCCACCAGCTGTGACTTTAAGCTCGCACTCTGATGTTCCCAGGATTTCTGTTCCTGCTTCATCGTCGCAATTCTATGCT 7 0.436062618509365 0.8948011848085259 0.462005141566034 N Y 3.4320914322326805 3.52720696927234 3.4320914322326805 0 0.0 0.0 Y 0.0 N N 5969 3859 ENSG00000151748 ENSG00000100503 - + 14 14 51135049 51297839 upstream intron SAV1 NIN 51098776 51186481 - - 0.0 51145202 51210085 + - N - 0.683220541243715 N SA467 1 1.0 1.0 1 0 1 N N 1.0 0.0 5 1.03786049405986 0.881470556598784 1.03786049405986 0.881470556598784 4 - 21.2 0.92447935499573 HCT116-unstranded 0.50 207367 CTTCCTCATTCACACCTTGAGGGCCCCGAATACTGAGGACACGGGCCTTTGCCGAGTGCTGTACTCCTGCGTCTTCGGTGCTGAGAAGTCACCTGATGACCCACGGCCGCATGGTGCCGAGAGGGACAGGCTTCTCCGGAAGGAACAGATTTTAGCTGTGGCCAG|TCTCGTTTCCTCTCAGTCCATCCACCCTTCATGGGGCCAGAGCCCTCTCTCCAGAATCTGAGCAGCAATGCCGTTTGCTGAAGACAAGACCTATAAGTATATCTGCCGCAATTTCAGCAATTTTTGCAATGTGGATGTTGTAGAGATTC 11 0.8099630168247 0.744301178273366 0.22016235538036 Y Y 3.78105657260285 3.20654356231198 3.20654356231198 2 0.993309896665601 0.0 Y 0.919718759987216 N Y 2043 11973 ENSG00000125843 ENSG00000088888 + - 20 20 3805949 3849280 coding utr5p AP5S1 MAVS 3801178 3827487 + + 0.0 3802940 3835205 + - N - - N SA467 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 12 1.0947295622275202 1.05207776110177 1.0947295622275202 1.05207776110177 4 - - 0.966108875409154 HCT116-unstranded 0.50 241360 GTTTGTACGAGTTCAGTGGAGGAGACCGCAAGTTGAGTGGAGGAGGCGGCGGTGGGGCCCCGGACCAGGTGCCTCCATGGCAGGCTCTGAAGAGCTGGGGCTCCGGGAAGACACGCTGAGGGTCCTAGCTGCCTTCCTTAGGCGTGGTGAGGCTGCCGGGTCTCCTGTTCCAACTCCACCTAGG|TGTCCTGTGGCCAGGCGGAAAGCAGTGAGAAGCCCAACGCTGAGGACATGACATCCAAAGATTACTACTTTGACTCCTACGCACACTTTGGCATCCACGAGGAGATGCTGAAGGACGAGGTGCGCACCCTCACTTACCGCAAC 12 1.0 0.32435187334999105 0.826380267532945 Y Y 3.612079893993029 3.43105836246279 3.43105836246279 0 0.0 0.0 Y 0.0 N Y 2615 35919 ENSG00000126453 ENSG00000126457 + - 19 19 50177172 50192286 coding coding BCL2L12 PRMT1 50168399 50179043 + + 0.0 50170056 50183744 + - N - - N SA467 2 0.0 1.07142857142857 1 1 5 Y Y 0.0 0.0 14 1.06629502814369 1.03786049405986 1.06629502814369 1.03786049405986 4 - - 0.964052776556514 HCT116-unstranded 0.50 241151 GAAAGTTGAACTAATAAAGTTTGTACGAGTTCAGTGGAGGAGACCGCAAGTTGAGTGGAGGAGGCGGCGGTGGGGCCCCGGACCAGGTGCCTCCATGGCAGGCTCTGAAGAGCTGGGGCTCCGGGAAGACACGCTGAGGGTCCTAGCTGCCTTCCTTAGGCGTGGTGAGGCTGCCGGGTCTCCTGTTCCAACTCCACCTAGAA|TTTTGTAGCCACCTTGGCTAATGGGATGAGCCTCCAGCCGCCTCTTGAAGAAGTAACCCCCTTTGCCCTTCCCTGTGTCTGCCCCCATTTTCCTTCCCCTCCCCTCCCCAGCTGTGGGCTGAGCTAGAGACGGGGTCAG 6 0.8330663049614381 0.44291557465002096 0.8713241320514751 Y Y 3.6759318169590096 3.684245618384 3.6759318169590096 0 0.0 0.0 Y 0.0 N Y 2615 35919 ENSG00000126453 ENSG00000126457 + - 19 19 50177172 50192286 coding coding BCL2L12 PRMT1 50168399 50179043 + + 0.0 50170056 50183129 + - N - - N SA467 1 0.0 1.0 1 0 5 Y Y 0.0 0.0 5 0.526038880550887 0.8530360225149519 0.8530360225149519 0.526038880550887 4 - - 0.972680657131924 HCT116-unstranded 0.50 241504 CGGTGCCCGAGCCGACGTCCAGCACCACCTTGTCCTTGAAGAGGTGCCGGTTATGAAACATGGAGTTGCGGTAAGTGAGGGTGCGCACCTCGTCCTTCAGCATCTCCTCGTGGATGCCAAAGTGTGCGTAGGAGTCAAAGTAGTAATCTTTGGATGTCATGTCCTCAGCGTTGGGCTTCTCACTGCTTTCCGCCTGGCCACAGGACAC|CTTCTGGTTAATGACTTCTGCCTCCTCCTCCAGCAGGGCCACCAGCCTCCGCAGTATGGCTTCCTTCTCTGTCGATGGGGGACCCTGTAATTCTGGAGGCAGAAGAGAATTTGGCTG 8 0.8840649931675542 0.24375681754936496 0.5293933557163679 Y Y 3.44040523365767 3.5310219591538 3.44040523365767 2 0.0 0.0115882753919563 Y 0.0 N Y 35919 2615 ENSG00000126457 ENSG00000126453 - + 19 19 50192286 50177172 coding coding PRMT1 BCL2L12 50179043 50168399 + + 0.0 50183744 50172372 - + N - 0.654433890093077 N SA467 1 0.0 1.0 1 0 5 Y Y 0.0 0.0 8 1.19425043152093 0.746406519700583 1.19425043152093 0.746406519700583 4 - 80 0.978394552143936 HCT116-unstranded 0.50 241282 GACACCTCAGCCACGCCTACCATCTCTCCAGTCTCTCTGACCCCGTCTCTAGCTCAGCCCACAGCTGGGGAGGGGAGGGGAAGGAAAATGGGGGCAGACACAGGGAAGGGCAAAGGGGGTTACTTCTTCAAGAGGCGGCTGGAGGCTCATCCCATTAGCCAAGGTGGCTACAAAATT|CCAGCCCCCGTGGGCCTGGATCCAGGGCGTGAAGCTGTGCACGTGCTCCACGCTGAGTCCGGCCAGGGTGCCCCCCAGCCCGGCCACGCGCCGGCTCAGCTCCATGGCTAGGGCCAGGCGGGCCAGGGGCTCCGGGGAAGGAGGCGGGGGCCCGGGGCATGCTCGGCTTG 5 0.8678765543288199 0.487748421065648 0.643348927629744 Y Y 3.65488030998075 3.27937163411225 3.27937163411225 0 0.0 0.0 Y 0.0 N Y 35919 2615 ENSG00000126457 ENSG00000126453 - + 19 19 50192286 50177172 coding coding PRMT1 BCL2L12 50179043 50168399 + + 0.0 50183129 50173745 - + N - 1.04380789205218 N SA467 2 0.0 1.2 1 1 5 Y Y 0.0 0.0 5 0.9454482582874052 1.0307518605389 1.0307518605389 0.9454482582874052 4 - 92.2 0.9593932577303008 HCT116-unstranded 0.50 241505 GACGTCCAGCACCACCTTGTCCTTGAAGAGGTGCCGGTTATGAAACATGGAGTTGCGGTAAGTGAGGGTGCGCACCTCGTCCTTCAGCATCTCCTCGTGGATGCCAAAGTGTGCGTAGGAGTCAAAGTAGTAATCTTTGGATGTCATGTCCTCAGCGTTGGGCTTCTCACTGCTTTCCGCCTGGCCACAGGA|CACCCAGCCCCCGTGGGCCTGGATCCAGGGCGTGAAGCTGTGCACGTGCTCCACGCTGAGTCCGGCCAGGGTGCCCCCCAGCCCGGCCACGCGCCGGCTCAGCTCCATGGCTAGGGCCAGGCGGGCCAGGGGCTCCGGGGAAGGAGGCGGGGGCCCGGGGCATGCTCGGCTTGGG 20 0.665221382458313 0.6350732190762239 0.7430954852477941 Y Y 3.45041445226185 3.3289582682151098 3.3289582682151098 3 0.0 0.0 Y 0.0 N Y 35919 2615 ENSG00000126457 ENSG00000126453 - + 19 19 50192286 50177172 coding intron PRMT1 BCL2L12 50179043 50168399 + + 0.0 50183744 50173745 - + N - 1.04673103946248 N SA467 2 0.0 1.09090909090909 1 2 5 Y Y 0.0 0.0 22 1.34353173546105 1.15159863039519 1.34353173546105 1.15159863039519 4 - 20.7272727272727 0.983193601875295 HCT116-unstranded 0.50 50731 TATGTTTTCTACATGTCCAGCTTCTTCCTCATCTCAGCTGCCCTCTTCATGGGTGGCAGCTTCTACGCCCTGCAGAAGAAGGAGCAAGGCAAGCAGGCTGTCGCGGCGGATGCCCTGGAGCGGGATCTTTTCTTGGAAGCCAAAGACGGTCCTGGGAAGCAACGGTCCCCTGAGATCAT|GACACTCACAGCCTAAGCCACCTCTACCCCTACGTTGTCAAATGCGATGGGAGTGTGGCTAGACCACCTCCTTCCCTGGTGCTTTGTTTCCTGTAACCACGAGCAATCTATCACACACCCGCTTCCTGATAATCTCCGAGAAGGAATCGGCCGAAGGGCTTCAGCATCCAGAAAGC 8 1.0 0.777233725966713 0.134332399779258 Y Y 3.55128313764676 3.4614567406359305 3.4614567406359305 0 0.0 0.0 Y 0.0 N N 2033 4131 ENSG00000170190 ENSG00000125449 + - 17 17 73102257 73126360 coding upstream SLC16A5 ARMC7 73083822 73106047 + + 0.0 73100275 73105111 + - N 2.52465411356348 - N SA467 1 0.0 1.0 1 0 2 N Y 0.0 0.0 9 1.28666266729339 1.17292453095806 1.28666266729339 1.17292453095806 4 19.5555555555556 - 0.983309536878142 HCT116-unstranded 0.50 50732 AACAACTTTAGCTATGTTTTCTACATGTCCAGCTTCTTCCTCATCTCAGCTGCCCTCTTCATGGGTGGCAGCTTCTACGCCCTGCAGAAGAAGGAGCAAGGCAAGCAGGCTGTCGCGGCGGATGCCCTGGAGCGGGATCTTTTCTTGGAAGCCAAAGACGGTCCTGGGAAGCAACGGTCCCCTGAGATCAT|ATTTTGCAGTAATTTGCATCTGGACATGGGATACGGGAGGCCAGGCTGCTCCTCGCAGTACACCCACCCACGCCTGCACCTGCCTCAGCGAAGCCGCTCGCCGCTGGTTCCAGCACAGGCTAAAGAGCTTCGGCATCCAGAAAACCAGAAGCGCGCCGCGCACGCGCGCCAAG 21 0.7499253230813772 0.33203840624076003 0.14485440513400302 Y Y 3.55128313764676 3.46448140203209 3.46448140203209 0 0.0 0.0 Y 0.0 N N 2033 4131 ENSG00000170190 ENSG00000125449 + - 17 17 73102257 73126360 coding upstream SLC16A5 ARMC7 73083822 73106047 + + 0.0 73100275 73105830 + - N 2.52465411356348 - N SA467 1 0.0 1.0 1 0 2 N Y 0.0 0.0 18 1.27955403377243 1.23690223264668 1.27955403377243 1.23690223264668 4 9.77777777777778 - 0.973338846693541 HCT116-unstranded 0.50 240578 TCATGGTCAAGGCCAAGGGGCAGTTTAAGAAACAGTCAGTGGCCAACGGTGTGGAGATATCTGTGCCTGTACCCAGCGATGCCGACTCCCCCAGATTCAAGACCAGTGTGGGCAGCGCCAAGTATGTGCCGGAGAGAAACGTCGTGATTTGGAGTATTAAGTCTTTCCCG|GCCGCCAGTGTCGACATGCTGCTGGAGGAGGTTCGCGCCGGCGACCGGCTGAGTGGGGCGGCGGCCCGGGGCGACGTGCAGGAGGTGCGCCGCCTTCTGCACCGGGAGCTGGTGCATCCCGACGCCCTCAAC 5 0.7518767301677 0.980459805520107 0.951760725416203 Y Y 3.41319935075004 3.62145727041145 3.41319935075004 0 0.0 0.0 Y 0.0 N Y 4764 779 ENSG00000129354 ENSG00000129355 + - 19 19 10697991 10679735 coding utr5p AP1M2 CDKN2D 10683347 10677138 - - 0.0 10687874 10679344 - + N - - N SA467 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 8 0.810384221389205 0.924122357724532 0.924122357724532 0.810384221389205 4 - - 0.9649331390847148 HCT116-unstranded 0.50 240706 GGCCCCCCATCGGGGTCAAGTTTGAGATCCCCTACTTCACCGTCTCTGGGATCCAGGTCCGATACATGAAGATCATTGAGAAAAGTGGTTACCAGGCCCTGCCCTGGGTTCGCTACATCACCCAGAGTGGC|GGCCGCCAGTGTCGACATGCTGCTGGAGGAGGTTCGCGCCGGCGACCGGCTGAGTGGGGCGGCGGCCCGGGGCGACGTGCAGGAGGTGCGCCGCCTTCTGCACCGGGAGCTGGTGCATCCCGACGCCCTCAACCGCTTCGGCAAGACGGCGCTGCAGGTCATGATGTTTGGCAGCACCGCCATCGCCCTGGAGCTG 6 1.0 0.333941802990132 0.213036355202762 Y Y 3.48639814491089 3.63080414160633 3.48639814491089 0 0.0 0.00304878048780488 Y 0.00304878048780488 N Y 4764 779 ENSG00000129354 ENSG00000129355 + - 19 19 10697991 10679735 coding utr5p AP1M2 CDKN2D 10683347 10677138 - - 0.0 10685093 10679344 - + N - - N SA467 1 0.0 1.0 1 0 2 N Y 0.0 0.0 10 0.604233849281425 1.02364322701794 1.02364322701794 0.604233849281425 4 - - 0.9792486916553272 HCT116-unstranded 0.50 80282 GCTGACCCGGGAGCTGCCCAGCTTCTTGGGGAAAAGGACAGATGAAGCTGCTTTCCAGAAGCTGATGAGCAACTTGGACAGCAACAGGGACAACGAGGTGGACTTCCAAGAGTACTGTGTCTTCCTGTCCTGCATCGCCATGATGT|GGACAGAGATCAGGGAAATAAAGGCAGAAGGCAGTGAGAGGGAGGCTATGCCTGCTGCTTGGATTCTCTGGGCTCACTCCCACAGTGAGCTGCACACTGTGATGGAGACTCCTCTGGAGAAGGCCCTGACCACTATGGTGACCACGTTTCACAAATATTCGGGGAGAGAGGGTAGCAAACTGACCCTGAGTAGGAAGGAA 12 1.0 0.365587366674332 0.604891140199458 Y Y 3.66016945000958 3.00868674126906 3.00868674126906 0 0.0 0.0 Y 0.0 N N 6910 62 ENSG00000196154 ENSG00000196420 + - 1 1 153522612 153514241 coding utr5p S100A4 S100A5 153516089 153509623 - - 0.0 153516285 153513947 - + N - - N SA467 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 17 0.9809914258921948 1.1658158974371 1.1658158974371 0.9809914258921948 4 - - 0.944966615736549 HCT116-unstranded 0.50 249132 GCCGGCACCGGCGACCTGTCTGACAATCATGACATCATCTCCATGAAGCTGTTCCAGCTGATGGTGGAGCACACGCCCGACGAGGAGAGCATCGACTGGACCAAGATCGAGCCCAGCGTCAACTTCCTCAAGTCGCCCAAAG|AGGCCGAGCATGGTTATGCGTCCCTGTGCCCGCATCGCAGTCCAGGCCCCATCCACAGGAGGAAGAAGCGACCCCCCCAGGCTCCTGGCGCGCAGGACAGCGGGCGGTCAGTGCACAATGAACTGGAGAAGCGCAGGAGGGCCCAGTTGAAGCGGTGCCTGGAGCGGCTGAAGCA 3 0.952005002875075 0.786311945139491 0.681997813400067 Y Y 3.3536034980430003 3.49424793801946 3.3536034980430003 0 0.992979891930198 0.0 Y 0.992979891930198 N Y 11212 3287 ENSG00000169223 ENSG00000213347 + - 5 5 176778853 176739758 coding coding LMAN2 MXD3 176758563 176728462 - - 0.0 176761285 176738485 - + N - - N SA467 1 0.0316455696202532 1.0 1 0 1 Y Y 0.0 0.0316455696202532 5 0.753515153221541 1.12316409631135 1.12316409631135 0.753515153221541 4 - - 0.978248373315081 HCT116-unstranded CGHSA0638 0.50 36919 GCAGCGCCAGGTGCAGGTGTCCAATGGGTCGCTCCTCGCCTAGCGTCACCACTGCCATGCCAGGTGGGGCCCGGCGGCCCCGTGCGCCCGTCAGGAACACCACACGCTCCAGCCGGTGCCCCAGCGTGCGGTTCACGGCCACGCCCAGCGTGGGCAGCGTGGTCTGAGAGGTCAGCACCGCCACCAGCAGCCTCTGCCTGATGCCCAGCTCCGTGCTGATGTAGCGGGTCC|CTCTACCAGCAGCCGTGTGTGGGTGCTGTCCTGGCCGGCCTGGCAGCAGTAAGTGCCTTGGTCCTCAGGTCGAACGTCATGGATGACCAGGCTGTGGGTGGGGCCGTGGCTGCGCATCTCATACTTATCTCCCGGGCACAGCTCGGCCCCCTCCCGCAGCCAGCACACGTGGCCCCCCGAGCGGGACACAGTCACCTCCAGCACCGCCCGG 27 0.50809765900826 0.584122654536873 0.498253227979364 Y Y 3.36720643949681 3.32696667658884 3.32696667658884 0 0.9952713617836172 0.0 Y 0.0 N Y 65533 310 ENSG00000123989 ENSG00000124006 - + 2 2 220408509 220436581 utr5p coding CHPF OBSL1 220403669 220415451 - - 0.0 220406911 220416251 + - N - 0.98623758158409 N SA467 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 29 1.6847461444670302 1.45016123827542 1.6847461444670302 1.45016123827542 4 - 2.6551724137931 0.956074776708848 HCT116-unstranded 0.50 151972 AATTTTGTCAGTTACGTGGGTAAAGTTGCCACAGGAAGATATGGACCATCACTTGGTGCAGCCCTGAAAGCCATTATCGCCATGGATACAGCAGGAATGATCCTGGGATGGAAATTTTTTGATCATGCGGCACATCTTGGGGGAGCTCTTTTTGGAAT|GATCTCCCTCTACACCTGGCGCCTCGCCTGCTGCCTGCTGGGACATGGCCTGGCCTGCTCAGCTGACCTGCTGCCACTTCTAGGCAGCCGTCATGTCACTTTGCTACAACTTCAAGCTAAGACAGGCAATGTTTTGGGAGATGAATCTGTTTTCTGACTGGCCAGGGATGTGCTG 22 1.0 0.719083677590653 0.437260924745899 Y Y 3.31319590126568 3.11761290642523 3.11761290642523 0 0.0 0.0 Y 0.0 N N 3940 1062 ENSG00000175193 ENSG00000180834 + - 3 3 183602721 183543382 coding upstream PARL MAP6D1 183547173 183533664 - - 0.0 183551280 183544520 - + N - - N SA467 2 0.0 1.06666666666667 1 1 1 N Y 0.0 0.0 15 1.03786049405986 1.1089468292694398 1.1089468292694398 1.03786049405986 4 - - 0.9518909456432793 HCT116-unstranded 0.50 80481 GCGTTGCTTCAGACTGGCTGTTGCCGCAATCTTGCTGCCAATGATCTCTCCCCGTCCCGAATAGCCAGACTACAGAAGATCCTTCACAGCTATGTGCCTGAAGAGATCAGGGATGGAAATCAAGTTCGAGTTACCTCATGGGATGGCAGGAAATGGGGAGAACTGGAGGGGGACACCTATGACCGGGTGCTGGTGGATGTGCCCTGTACCACAGACCGCCACTCCCTTCATGAGGAGGAGAACAACATCTTTAAGCGGTCAAGGAAGAAGGAGCGACAGATATTGCCTGTGCTGCAAGTGCAGCTTCTTGC|AACCCAGACCTGGACTCAGAGGCGCTGCTAGCCCTGCCCCTGCCTCAGCTGGTGCAGAAGTTACACAGTAGAGAGCTGGCCCCTGAGGCCGTGCTCTTCACCTATGTGGGAAAGGCCTGGGAAGTGAACAAAGGGACCAACTGTGTGACCTCCTATCTGGCTGACTGTGAGACTC 7 1.31950913065342e-06 0.322864672624532 0.81935996174015 N Y 3.5758885146813 3.31233066536513 3.31233066536513 0 0.9942974479319447 0.0 Y 0.0 N Y 1797 1067 ENSG00000117481 ENSG00000117480 + - 1 1 46830824 46879520 coding coding NSUN4 FAAH 46805849 46859937 + + 0.0 46826500 46867763 + - N - - N SA467 1 0.0 1.0 1 0 2 N N 0.0 0.0 9 1.33642310194009 1.15870726391614 1.33642310194009 1.15870726391614 4 - - 0.9211947334398142 HCT116-unstranded CGHSA0337 0.50 81155 ACAACATCTTTAAGCGGTCAAGGAAGAAGGAGCGACAGATATTGCCTGTGCTGCAAGTGCAGCTTCTTGC|AACCCAGACCTGGACTCAGAGGCGCTGCTAGCCCTGCCCCTGCCTCAGCTGGTGCAGAAGTTACACAGTAGAGAGCTGGCCCCTGAGGCCGTGCTCTTCACCTATGTGGGAAAGGCCTGGGAAGTGAACAAAGGGACCA 6 4.381648900995561e-05 0.451405789981577 0.900731889487333 N Y 3.5758885146813 3.31233066536513 3.31233066536513 0 0.98578231292517 0.0 Y 0.98578231292517 N Y 1797 1067 ENSG00000117481 ENSG00000117480 + - 1 1 46830824 46879520 coding coding NSUN4 FAAH 46805849 46859937 + + 0.0 46826500 46867763 + - N - - N SA467 1 0.0 1.0 1 0 2 N N 0.0 0.0 5 0.803275587868247 1.0307518605389 1.0307518605389 0.803275587868247 4 - - 0.931737597467816 HCT116-unstranded CGHSA0337 0.50 1394 GAACTTCAGACAGATTCAGCCGAATACTCAAGCACATCTTGACCCAGAGGAGCTACTACCCACTCTACCCGCCCCAAGAAGACATGGCCATTGACTATGAGTCGTTCTATGTTTACGCACAGCTGCCTGTCACCCCAGATGTCCTCATCATCCCGTCAGAGCTGAGGTACTTCGTGA|AGCTCCTCAGCCCTGGACCGGGGACAAGTAACCCTCGGTGACAAGACCAAAGTGCACTGCTGCCCACACAGTTCCTACCTTTCTGGCTTCAATTCTTCAGAAGAGTTTGCCGTCCTTTGGGGAGAACGTGATTTTTGTTATCTCAGCCCACTGACTTCATTGATCTCTAAT 9 0.938835902186576 0.809089487440532 0.261583127164675 Y Y 3.62977107183644 3.53871326596283 3.53871326596283 0 0.0 0.0 Y 0.0 N Y 1137 2551 ENSG00000014138 ENSG00000149798 + - 11 11 65073060 65089900 coding intron POLA2 CDC42EP2 65029233 65082289 + + 0.0 65063461 65088015 + - N - 0.0594166008139343 N SA467 1 0.0 1.0 1 0 2 N Y 0.0 0.0 12 1.27244540025147 1.13738136335327 1.27244540025147 1.13738136335327 4 - 10.1666666666667 0.983309536878142 HCT116-unstranded 0.50 240451 TGTAGCTGCCACTGAGAAGAAGGCGGTGACTCCAGCTCCTCCCATAAAGAGGTGGGAGCTGTCCTCGGACCAGCCTTACCTGTGACACTGCACCCTCACGGCCACCCGACTACTTTGCCTCCTTGGATTTCCTCCAGGGAGAATGTGACCTAATTTATGACAAATACGTAGAGCTCAG|CAACCCGACTCCGAGAATGGACGTTTCATTTATTCATTTACTCACCAAATGTTTACTAAGAGCCTACTATGAGTCAAGCACTATGTGTCAGATCCTGAGAATAAAGCAGTGAGCAACAGAAGATCCCTGCCCTCCAGTAGCTAGCATTCTATGGGGACTCGGACAACAAACCAGAA 17 1.0 0.5975583894993279 0.675607255895028 Y Y 3.5816815158199 3.48639814491089 3.48639814491089 4 0.9943341869398208 0.0 Y 0.9943341869398208 N N 2152 6211 ENSG00000167774 ENSG00000167775 + - 19 19 8386280 8373240 utr3p upstream NDUFA7 CD320 8376234 8367011 - - 0.0 8376296 8373768 - + N - - N SA467 1 0.8100558659217879 1.0 1 0 1 N Y 0.0 0.8100558659217879 23 1.10183819574848 1.27244540025147 1.27244540025147 1.10183819574848 4 - - 0.976215322639838 HCT116-unstranded 0.50 1411 ACCACGAAGAGGATGACTCCATTCTCCACCAGGCCCAGCAGCGAGGCCAGCCCGTGCAGCAGCACGGCCGCGTGGTCGATGTAGCGGATGCTGGTGTTGCTGTGGCTCTGGAGACGGCTCATCTGCTCCAGGATGGGGCAGAGTGGCTTCAGTGTGGCGTTGGCCGACATCGTGGGGCTCT|CAAAGTTGTTATCCAGCTGCAAAGTCTTAAAGTTCTTAAGCTTGCGCAGATCCCAGAGCTTGACAGAGGAGTCATCAGCCGCTGTAGCCAGGTAGTAACCATTCTCAGAGAAGGCGATGCTAGTGATGGGGCCCGAGTGGCCAGG 4 1.0 0.7728372230396691 0.983469025569286 N Y 3.53209488171704 3.2829653569618795 3.2829653569618795 2 0.0 0.0 Y 0.0 N Y 1765 12353 ENSG00000183134 ENSG00000110107 - + 11 11 60623444 60674060 intron coding PTGDR2 PRPF19 60618413 60658202 - - 0.0 60621204 60665573 + - N 85.141424991049 0.230395695635052 N SA467 1 0.0 1.0 1 0 1 N N 0.0 0.0 5 1.31509720137722 1.05918639462273 1.31509720137722 1.05918639462273 4 0.8 177.4 0.967728003999187 HCT116-unstranded 0.50 1170 TAGCATCGCCTTCTCTGAGAATGGTTACTACCTGGCTACAGCGGCTGATGACTCCTCTGTCAAGCTCTGGGATCTGCGCAAGCTTAAGAACTTTAAGACTTTGCAGCTGGATAACAACTTTGAGGTAAAGTCACTGATCTTTGACCAGAGTGGTACCTACCTGGCTCTTGGGGGCACGGATGTCCAGATCTACATCTGCAAACAATGGACGGAGATTCTTCACTTTACAGAG|CCCCACGATGTCGGCCAACGCCACACTGAAGCCACTCTGCCCCATCCTGGAGCAGATGAGCCGTCTCCAGAGCCACAGCAACACCAGCATCCGCTACATCGACCACGCGGCCGTGCTGCTGCACGGGCTGGCCTCGCTGCTGGGCCTGGTGGAGAATGGAGTCATCCTCTTCGTGGTGGGCTGCCGCATGCGCCAGACCGTGGTCA 61 0.986521476102715 0.7237355565826321 0.489374979403923 N Y 3.5429693362217702 3.53209488171704 3.53209488171704 5 0.0 0.0 Y 0.0 N Y 12353 1765 ENSG00000110107 ENSG00000183134 + - 11 11 60674060 60623444 coding intron PRPF19 PTGDR2 60658202 60618413 - - 0.0 60665318 60621204 - + N - 73.2520346010135 N SA467 1 0.0 1.0 1 0 1 N N 0.0 0.0 77 1.64209434334128 1.51413893996404 1.64209434334128 1.51413893996404 4 - 0.103896103896104 0.915990611194761 HCT116-unstranded 0.50 1465 GTGGGGATGAAGTCCTGTACTGCTATGAAGTGCAGTTGGAAAGCAAGGTGCGGCGGAAAGGCCTGGGGAAGTTCCTCATACAGATCCTGCAGCTCATGGCCAACAGCACACAGATGAAGAAGGTTATGTTAACAGTATTTAAACACAATCATGGTGCCTACCAGTTCTTCAGAGAAGCGTTGCA|GAATTGGCCGTTGGGCTTACCTCCTGCTTCGTGACCTTCCTCCTGCCAGCGGGCTGGATCCTGTCACACCTGGAGACCTACAGGAGGCCAGAGTGAAGGGGTCCGTTCTGTCCCTCACACTGTGACCTGACCAGCCCCACCGGCCCATCCTGGTCATGTTACTGCATTTGTGGCCGGCCTCCCCTGGATCATGTCATTCAATTC 39 0.721700068483867 0.954491308615944 0.6309083735936539 N Y 3.86529765513778 3.5514509715161 3.5514509715161 4 0.0 0.0 Y 0.0 N Y 1175 13230 ENSG00000110583 ENSG00000176340 + - 11 11 63724800 63744015 coding coding NAA40 COX8A 63706431 63742079 + + 0.0 63721521 63743697 + - N - - N SA467 1 0.0 1.0 1 0 3 N N 0.0 0.0 32 1.23690223264668 1.4359439712335 1.4359439712335 1.23690223264668 4 - - 0.979628482396508 HCT116-unstranded 0.50 22758 AGGGCATTCAGATTTGGGAGAAGTAGCCCCAGAAATAAAAGCATCAGAGAGACGAACAGCTGTGGCCATTGCAGATTTGGAATGGAGAGAAATGGAAGGAGATGATTGCGAGTTCCGTTATGGAGATGGTACAAATGAGGCTCAGGACAATGATTTTCCAACA|GGTGCTGTCCTGGAGCCGAGAGCTGCCTTGCGCTTGGCGCGCCCTGCACACCTCCCCGGTCTGCGCCAAGAACCGGGCGGCCCGAGTACGCGTAAGCAAGGGGGACAAGCCGGTGACCTACGAGGAGGCACACGCGCCGCACTACATCGCCCACCGTAAAGGCTGGCTGTCGCTGCACACAGGTAACCTGGATGGAGAGGACCATGC 6 0.8460366960704909 0.9546772529976651 0.608540569835316 Y Y 3.59425138750382 3.26248291143709 3.26248291143709 0 0.981644700940916 0.0 Y 0.596183420700147 N Y 4361 4959 ENSG00000106608 ENSG00000062582 + - 7 7 43966010 43909492 coding utr5p URGCP MRPS24 43915493 43906157 - - 0.0 43921258 43908975 - + N - - N SA467 1 0.224242424242424 1.0 1 0 1 N Y 0.224242424242424 0.0 5 0.8388187554730359 1.33642310194009 1.33642310194009 0.8388187554730359 4 - - 0.9646316284573272 HCT116-unstranded 0.50 176221 GGAACAGGGGAAGCCCTTATAAACTTGGACGATATGCATTCAGACATGATTTACAATGTGAGCTGGAACCGGAATGGCAGTCTGATCTGCACAGCTTCCAAAGACAAGAAAGTGAGAGTCATTGATCCCAGGAAACAAGAGATTGTTGCTG|TGCCATGCCTCTGCAACTCCTCCTGTTGCTGATCCTACTGGGCCCTGGCAACAGCTTGCAGCTGTGGGACACCTGGGCAGATGAAGCCGAGAAAGCCTTGGGTCCCCTGCTTGCCCGGGACCGGAGACAGGCCACCGAATATGAGTACCTAGATTATGATTTCCTGCC 11 0.697596075429136 0.7181361828581558 0.571818151758713 Y Y 3.43105836246279 3.30434773350738 3.30434773350738 0 0.0 0.00312499999999993 Y 0.00312499999999993 N Y 19538 4324 ENSG00000110880 ENSG00000110876 + - 12 12 109125372 109027735 coding coding CORO1C SELPLG 109038885 109015686 - - 0.0 109052514 109018088 - + N - 66.2376474926254 N SA467 1 0.0 1.0 1 0 3 N Y 0.0 0.0 15 1.05207776110177 1.20846769856285 1.20846769856285 1.05207776110177 4 - 2.2 0.9868370598712092 HCT116-unstranded 0.50 175437 CAGAGGAGTGGTGTCAGTGCTGTTCCTCAGCATTTCTGGAGGCTCCGTTTCTGGCAGGAAATCATAATCTAGGTACTCATATTCGGTGGCCTGTCTCCGGTCCCGGGCAAGCAGGGGACCCAAGGCTTTCTCGGCTTCATCTGCCCAGGTGTCCCACAGCTGCAAGCTGTTGCCAGGGCCCAGTAGGATCAGCAACAGGAGGAGTTGCAGAGGCATGGCACCAC|ACTGGCCGTGTCTGTGGTTTTCTTGGGGATGCTGATCAGGTCGCACTTCTTGTTTGCAGTGGGCTTGCTATCCAGAATGTTCTTCTTGACCACCTTGAGATCCCTGTTTTTGCCTGGAATGTACCCGTGCTTCAAGGAGATGAGGATTGGGTCTGCATTCTTGCCTTCGAACCACTCTTCTGCCTCCAGCGCGGCCTCTGGCC 276 0.999720336708242 0.9963656143793972 0.543431867614235 Y Y 3.34520999103131 3.4048456965317007 3.34520999103131 0 0.0 0.0 Y 0.0 N Y 4324 19538 ENSG00000110876 ENSG00000110880 - + 12 12 109027735 109125372 utr5p coding SELPLG CORO1C 109015686 109038885 - - 0.0 109018088 109042381 + - N - 1.17568250426462 N SA467 1 0.0 1.0 1 0 1 N Y 0.0 0.0 248 1.60655117573649 1.49992167292212 1.60655117573649 1.49992167292212 4 - 6.09274193548387 0.978248373315081 HCT116-unstranded 0.50 174771 TGATCAGCATCCCCAAGAAAACCACAGACACGGCCAGTGTGCAAAATGAAGCCAAGTTGGATGAGATTTTAAAAGAGATCAAATCTATAAAAGACACAATCTGCAATCAAGATGAGCGTATTTCCAAGTTAGAACAGCAGATGGCAAAGATAGCAGCCTGAA|GGTGCCATGCCTCTGCAACTCCTCCTGTTGCTGATCCTACTGGGCCCTGGCAACAGCTTGCAGCTGTGGGACACCTGGGCAGATGAAGCCGAGAAAGCCTTGGGTCCCCTGCTTGCCCGGGACCGGAGACAGGCCACCGAATATGAGTACCTAGATTATGATTTCCTGCCAGAAACGGAGCCTCCAGAAATG 21 1.0 0.7576785350860441 0.29731967486809896 Y Y 3.52779895866475 3.47076375903745 3.47076375903745 0 0.0 0.0 Y 0.0 N Y 19538 4324 ENSG00000110880 ENSG00000110876 + - 12 12 109125372 109027735 utr3p coding CORO1C SELPLG 109038885 109015686 - - 0.0 109041177 109018088 - + N - - N SA467 1 0.0 1.0 1 0 2 N Y 0.0 0.0 33 1.31509720137722 1.23690223264668 1.31509720137722 1.23690223264668 4 - - 0.983309536878142 HCT116-unstranded 0.50 207193 GAGAGCTCAAGAGGAGGCTGGGCCTCTCCACCCTGGGGGAGCTGAAACAGAACCTGTCCAGGAGCTGGCATGACGTGCAGGTCTCTAGCGC|GAGATTTGTTATGAGGAATTGGCCCACGTCATTATGGAGACGGAATCTCATGCTCTGCCATTTGCTGAAGATTGAGGAAAGCAGTGGGATAATAACAGTCCAAGGACAGGAGGAGACACGTGGCCCCGCTCAGGCTGGCAGGCGAGAAGGAAAACCCAGGCCAACTCCTCC 9 9.35622126445381e-05 0.6696288649256851 0.5755115183006291 Y Y 3.67952553980864 3.5110433747387795 3.5110433747387795 0 0.9781055446454692 0.0 Y 0.0 N N 14684 10696 ENSG00000101150 ENSG00000101152 + - 20 20 62522898 62567384 coding intron TPD52L2 DNAJC5 62496596 62526518 + + 0.0 62505169 62557895 + - N - 0.00573549185436212 N SA467 1 1.0 1.0 1 0 3 N Y 0.0 1.0 5 0.8388187554730359 0.9809914258921948 0.9809914258921948 0.8388187554730359 4 - 5 0.967362705395618 HCT116-unstranded CGHSA0577 0.50 207290 GAGGAGGAGGAGCTCAGGGCTGAGCTTACCAAGGTGGAAGAGGAAATTGTCACTCTGCGCCAGGTCCTGGCAGCCAAGGAGAGGCACTGTGGAGAGCTCAAGAGGAGGCTGGGCCTCTCCACCCTGGGGGAGCTGAAACAGAACCTGTCCAGGAGCTGGCATGACGTGCAGGTCTCTAGCGC|GAGATTTGTTATGAGGAATTGGCCCACGTCATTATGGAGACGGAATCTCATGCTCTGCCATTTGCTGAAGATTGAGGAAAGCAGTGGGATAATAACAGTCCAAGGACAGGAGGAGACACGTGGCCCCGCTCAGGCTGGCAGGCGAGAAGGAAAACCCAGGCCAACTCCTCCTCCCACCCCTTTC 9 0.471807422334054 0.6696288649256851 0.5755115183006291 Y Y 3.67952553980864 3.5110433747387795 3.5110433747387795 0 0.989040931820223 0.0 Y 0.0 N N 14684 10696 ENSG00000101150 ENSG00000101152 + - 20 20 62522898 62567384 coding intron TPD52L2 DNAJC5 62496596 62526518 + + 0.0 62505169 62557895 + - N - 0.00573549185436212 N SA467 1 1.0 1.0 1 0 3 N Y 0.0 1.0 14 1.14448999687423 1.32220583489818 1.32220583489818 1.14448999687423 4 - 1.78571428571429 0.982106450303462 HCT116-unstranded CGHSA0577 0.50 78321 GAAACAGCTGAAGCGAATGTTTGAGCCTACTCGTTTGATTGCAACTATCATGGTGCTGTTGTGTTTTGCACTTACCCTGTGTTCTGCCTTTTGGTGGCATAACAAGGGACTTGCACTTATCTTCTGCATTTTGCAGTCTTTGGCATTGACGTGGTACAGCCTTTCCTTCATACCATTTGCAAG|ACGGATGTTTCCAGTCCTAAAGATTAGTGTCACAGGGTTGGACCCCAATGCCATGTACTCCCTCCTGCTGGACTTTGTCCCTACGGACAGTCACCGCTGGAAGTACGTCAACGGGGAATGGGTGCCCGCTGGCAAGCCAGAGGTCT 22 0.9740101651194368 0.701457786978229 0.697026250020376 N Y 3.716171579866991 3.58064844605001 3.58064844605001 0 0.993171440431714 0.0 Y 0.0235159817351599 N Y 1089 558 ENSG00000213064 ENSG00000143178 + - 1 1 168212378 168283664 coding coding SFT2D2 TBX19 168195176 168250278 + + 0.0 168208398 168260398 + - N - 0.0391225119701006 N SA467 1 0.0 1.0 1 0 3 Y N 0.0 0.0 16 1.22268496560476 1.06629502814369 1.22268496560476 1.06629502814369 4 - 0.0625 0.9866144126905708 HCT116-unstranded CGHSA0039 0.50 228563 CCATGTTACGATGAGCAATGATGTTTCTGAGGAGGAGAGCGAGGAAGAGGAAGAGGACAGTGATGAGGAAGAAGTTGAGCTGTGCCCCATCCTTCCTGCCAAAAAGCAGGGGGGCAGGCCCTAGCCCTCCTAG|GCTGTTGCACTTGCTGGTCCTCTGCCTCCAAGCCCAGGTAACTGTTCAGTCCTCACCTAATTTTACACAGCATGTGAGGGAGCAGAGCCTGGTGACGGATCAGCTCAGCCGCCGCCTCATCCGGACCTACCAACTC 4 0.00189888247569288 0.9539611978563908 0.38709119790074 Y Y 2.89319139223026 3.4320914322326805 2.89319139223026 0 0.0 0.0 Y 0.0 N Y 4474 155 ENSG00000107833 ENSG00000107831 + - 10 10 103543170 103535827 utr3p coding NPM3 FGF8 103541082 103530081 - - 0.0 103541484 103535533 - + N - - N SA467 1 0.0 1.0 1 0 3 N Y 0.0 0.0 8 1.12316409631135 0.803275587868247 1.12316409631135 0.803275587868247 4 - - 0.93683834779727 HCT116-unstranded 0.50 229707 TTAAGGTAGAGGAAGAGGATGATGCGGAGCACGTGCTGGCACTAACCATGCTCTGCCTCACCGAGGGAGCCAAAGACGAGTGTAATGTGGTAGAAGTTGTGGCCCGGAACCATGACCATCAGGAGATCGCAGTCCCTGTGGCCAACCTCAAGCTGTCCTGCCAACCCATG|GCTGTTGCACTTGCTGGTCCTCTGCCTCCAAGCCCAGCATGTGAGGGAGCAGAGCCTGGTGACGGATCAGCTCAGCCGCCGCCTCATCCGGACCTACCAACTCTACAGCCGCACCAGCGGGAAGCACGTGCAGGTCCTGGCCAACAAGCGCATCAACGCCATGGCAGAGGACGGCGACCCCTTCGCAAAGCTCATCGTGGAG 1 0.254299689054709 0.868852277336702 0.905879320710836 Y Y 3.3184850412945 3.37080016234644 3.3184850412945 0 0.0 0.0 Y 0.0 N Y 4474 155 ENSG00000107833 ENSG00000107831 + - 10 10 103543170 103535827 coding coding NPM3 FGF8 103541082 103530081 - - 0.0 103542235 103535533 - + N - - N SA467 1 0.0 1.0 1 0 3 N Y 0.0 0.0 5 0.9809914258921948 1.20135906504189 1.20135906504189 0.9809914258921948 4 - - 0.949309746785827 HCT116-unstranded 0.50 229078 CGCAGTCCCTGTGGCCAACCTCAAGCTGTCCTGCCAACCCATGTTACGATGAGCAATGATGTTTCTGAGGAGGAGAGCGAGGAAGAGGAAGAGGACAGTGATGAGGAAGAAGTTGAGCTGTGCCCCATCCTTCCTGCCAAAAAGCAGGGGGGCAGGCCCTAGCCCTCCTAG|GCTGTTGCACTTGCTGGTCCTCTGCCTCCAAGCCCAGCATGTGAGGGAGCAGAGCCTGGTGACGGATCAGCTCAGCCGCCGCCTCATCCGGACCTACCAACTCTACAGCCGCACC 4 0.5599886786773389 0.817367203084732 0.532667475950534 Y Y 2.89319139223026 3.37080016234644 2.89319139223026 0 0.0 0.0 Y 0.0 N Y 4474 155 ENSG00000107833 ENSG00000107831 + - 10 10 103543170 103535827 utr3p coding NPM3 FGF8 103541082 103530081 - - 0.0 103541484 103535533 - + N - - N SA467 1 0.0 1.0 1 0 3 Y Y 0.0 0.0 5 0.8388187554730359 0.582907948718551 0.8388187554730359 0.582907948718551 4 - - 0.960617403584026 HCT116-unstranded 0.50 201913 TAAGCGAGCTGGCCCGCTGTTCCATTGTGAGCTACCATGGCAATGTCCTCTATGACAAGTACATCAGGCCTGAGATGCCCATCGCTGACTACCGTACCCGCTGGAGTGGCATCACTCGGCAGCACATGCGCAAGGCTGTCCCCTTCCAGGTGGCCCAGAAAGAGATCCT|GCAGCTCCTGAAAGGCAAGCTGGTGGTGGGTCATGACCTGAAGCACGACTTCCAGGCACTGAAAGAGGACATGAGCGGCTACACAATCTACGACACGTCCACTGACAGGCTGTTGTGGCGTGAGGCCAAGCTGGACCACTGCAGGCGT 5 1.0 0.284885473098049 0.534857156733907 Y Y 3.39809933120991 3.43039601505348 3.39809933120991 0 0.0 0.185003399626041 Y 0.185003399626041 N Y 14327 206 ENSG00000181026 ENSG00000172183 + - 15 15 89175513 89199714 coding coding AEN ISG20 89164527 89179384 + + 0.0 89169980 89195341 + - N - 0.207150277367482 N SA467 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 7 0.924122357724532 1.05207776110177 1.05207776110177 0.924122357724532 4 - 12.5714285714286 0.969252451387224 HCT116-unstranded 0.50 80592 AGCCAGGCAGGGGGATGAACCGCGAGGGAGCTCCCGGGAAGAGTCCGGAGGAGATGTACATTCAGCAGAAGGTCCGAGTGCTGCTCATGCTGCGGAAGATGGGATCAAACCTGACAGCCAGCGAGGAGGAGTTCCTGCGCACCTATGCAGGGGTGGTCAACAGCCAGCTCAGCCAGCTGCCTCCGCACTCCATCGACCAG|GTTAACAAGCACAAGCCCTGGCTGGAGCCCACCTACCACGGCATAGTCACAGAGAACGACAACACCGTGCTCCTCGACCCCCCACTGATCGCGCTGGATAAAGATGCGCCTCTGCGATTTGCAGGTGAGATTTGTGGATTTAAAATTCACGGGCAGAATGTC 4 0.625877060330944 0.5507883671977579 0.371494788567656 Y Y 3.17564132302907 3.48912663185998 3.17564132302907 0 0.993844165561337 0.0 Y 0.0 N Y 963 16243 ENSG00000178585 ENSG00000171603 + - 1 1 9970394 9884584 coding coding CTNNBIP1 CLSTN1 9908334 9789084 - - 0.0 9931245 9833452 - + N - - N SA467 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 10 1.40040080362871 0.8388187554730359 1.40040080362871 0.8388187554730359 4 - - 0.9266372402298072 HCT116-unstranded CGHSA0344 0.50 111500 CCCAGAGGAGGACAAGGAGGAGAACAAGGATGATTCTGCCTCCAAATTGGCCCCAGAGGAAGAGGCAGGAGGGGCTGGCACACCCGTGATCACGGAGATTTTCAGCCTGGGTGGAACCCGCTTCCGAGATACAGCAGTCTGGTTGCCAAG|AGATCCAAGCCTCCTAAAGGCCAAGGAGCTGAGCACCATCTAGAAAGAATCCGACGCAGCCATCAGAAGCATAATGCTATTTTGGCTTCCATTAAGTCAAGTGAGCGGGATCGCTTGAAAGCTGAGTGGGACCAGCACAATGACTGCAAGATTTTGGACAGCCTTGTGCGAGCAAGAAT 3 1.0 0.7324837585915409 0.529786226526744 Y Y 3.85425536676371 3.45400817511148 3.45400817511148 0 0.0 0.0 Y 0.0 N Y 3372 138 ENSG00000141644 ENSG00000172361 + - 18 18 47808144 47792892 coding coding MBD1 CCDC11 47793252 47753563 - - 0.0 47799047 47788589 - + N - 1.15954421320275 N SA467 1 0.0 1.0 1 0 1 N Y 0.0 0.0 6 1.00231732645507 1.23690223264668 1.23690223264668 1.00231732645507 4 - 4.83333333333333 0.972835903783584 HCT116-unstranded 0.50 213748 CCTCTCGCAGAGCCTATCCACGAGCTCCTTCACTCCCTCCTTGTCAGGCACCAGAGACTGGTCCTGGTCATCTGCCAGCGGGGTTCCTGCCTGGCGGTAGATGCAGCGCACCGTGTAGCGCACTTCTGACCAGTAGTTCTGCAGCTGCTGAGGTTCCCGGTCCGCCTCTGCCGAAATTTCT|CACTGGCTGGTCAAGGCCGCCATGCCTCTCCTCCTTCTCCACGGTCCTGCGGCAGTCCGGGCACACCCACAGTGGCAGGTGCAGCACGCTGTTGCCCTTGGGAGCCATGGAAAGGGCCAATTTGCTCGCAGTCTTAATTCCACTCTCTAAGAATGATGAGTCTTTCC 10 1.0 0.992480184548994 0.565412205857276 Y Y 3.4655144718019804 3.41525614272 3.41525614272 6 0.994029133709658 0.00883619580323591 Y 0.0 N N 1455 16489 ENSG00000125386 ENSG00000063978 - + 4 4 2734292 2627047 utr5p utr3p FAM193A RNF4 2626988 2463947 + + 0.0 2628137 2598056 - + N - 31.8986754321705 N SA467 1 0.0 1.0 1 0 1 N Y 0.0 0.0 15 1.2582281332095502 1.19425043152093 1.2582281332095502 1.19425043152093 4 - 6.6 0.937377848420942 HCT116-unstranded 0.50 80044 ATGCTGCAGGGCCGGCAGCGGCAGGCGGAGCAGGAGGCCACAGTGGCGCCGGCAGAGCAGGAGTGGCTGGAGGAGCTGTGGTTGGAGCAGGAGGTGGCACGGCAGGGCCTGGAGGGCTCCCTATGAGTGGCGGAGCAGGCCCAGGAGGCGCTGGAGCAACAGCTCCCCACACTGCACCATGAGCTCAGTTGGCTGCAGGAGCAGCTAGCAC|AGGCAATCTGAAGGCAAATCCTGTTTAGACCCAGGCGAAGGTTCCCGGTGACCCGGGCTCTCACCAGCCAATTGTCCCTTGCCGTCCTCCTGAGGGTGCCTGGAGCTTAAGCACTGTGTGCTCTTGGCCTCCACACTGGGGATGCCGCTGACTCCCACTGTCCAGGGCTTCCAGTGGATTCTCCGAGGCCCTGATGTAGAAACTTCCCCATTGGGTG 24 1.0 0.972099368292093 0.5734153879461421 Y Y 3.42204236083514 3.631930497332061 3.42204236083514 0 0.995271710911521 0.0 Y 0.0 N Y 2587 2638 ENSG00000215908 ENSG00000219481 + - 1 1 16971178 16940083 intron intron CROCCP2 NBPF1 16944751 16888818 - - 0.0 16952270 16935274 - + N - - N SA467 6 0.105022831050228 1.88235294117647 1 10 1 N Y 0.0 0.105022831050228 17 1.49281303940117 1.48570440588021 1.49281303940117 1.48570440588021 4 - - 0.9172254694967472 HCT116-unstranded 0.50 131239 CATCCAGCACAGGGCCTGGCACAGAATAAATGCTTTGGGGCGCCTGACACTGATCACACTACCCCTGCCCTCCTGAGGCTCCACATCTATGTATCCCATGGAAACCAGAGTCACAAATGGAGACAGATTCAGAGACTCAGCCTGAAAGGAGACAGAAGAGGCCGAGAGCTACAGGTTGCATGGCCCAGGATGGCAAAG|ACTCCACGGTTAATATCACAGCAGCTGGACAGAGACAAGAGCAGAGTCAGGCATCCTGGGCTGGCAGCTGCCTGTTGGGACTACACAGCCCCAAGCCAGCTCCCTGTCTCCCTAGGCAGAACACACGTTGGCAGAGACACTTGCTTTCTCCTCTGGCTGTTTCAAGCACTGGCCTAAGAGGTGGGGACTTGGGAGGAAGAGAACT 29 0.9299365430032042 0.818431337427614 0.5278142423839629 Y Y 3.46977054206091 3.72824693801095 3.46977054206091 0 0.0 0.0 Y 0.0125512551255126 N N 2509 369 ENSG00000196155 ENSG00000135740 - + 16 16 67323402 67306093 utr5p coding PLEKHG4 SLC9A5 67311413 67271586 + + 0.0 67311497 67300014 - + N - 0.202233342710867 N SA467 1 0.170854271356784 1.0 1 0 2 N Y 0.170854271356784 0.0 26 1.4146180706706295 1.45726987179638 1.45726987179638 1.4146180706706295 4 - 0.769230769230769 0.983309536878142 HCT116-unstranded 0.50 162636 CACACCACCTGAAGATCTCCAGAGTCGTTTGGAATCTTACGTTAAAGAAGTTTTTGGTTCATCTCTTCCTAGTAATTGGCAAGACATCTCCCTGGAAGATAGTCGTCTAAAGTTCAATCTTCTGGCTCATTTAGCTGATGACTTGGGTCATGTAGTCCCTAACTCCAGACTCCACCAGATGTGCAGGG|TTTTGAGGTTTTGCTGAAGATATTCCTGAAGAATCATCCCAGGTGCCACACTAAAAAAATGATCCAGTTGACAGCTACCCCTGTGAGTGCACTTGTTGATGAGCCAGTGCATATCCGAGCTACAGGCCTGATTCCCTTTCAGATGGTGAGTTTTCAGGCATCACTGGAAGATGAAAACGGAGACATGTTTTATTCTCAAGCCCACTATA 35 0.997598986953903 0.649374316407182 0.389833031568706 Y Y 3.5429693362217702 3.4048855493250496 3.4048855493250496 2 0.0 0.0 Y 0.0 N Y 960 1916 ENSG00000136897 ENSG00000136881 + - 9 9 104160896 104145801 coding utr5p MRPL50 BAAT 104149915 104122699 - - 0.0 104152859 104133745 - + N - 83.5277984052052 N SA467 2 0.0209424083769634 1.35714285714286 1 10 1 N Y 0.0209424083769634 0.0 28 1.35774900250297 1.47859577235925 1.47859577235925 1.35774900250297 4 - 0.0357142857142857 0.978175101616227 HCT116-unstranded 0.50 213991 AGAAGGTAAAACTTAGATGTCCTTGTAAAAGAATAAAAAAGGAATTGCAGTGCAACAAAGTACGTGAAAATCAGGTTTCAATAGAATGTGACACAACGTGCAAGGAAATGAAGCGGAAAGCATCTGAGATAAAAGAAGCAGAAGCCAAAGCTGCTCTTGAAGAAGAAAAACGAAGACAACA|GGTCTTGAGAGCTGATGACAATAACATGGGCAATGGCTGCTCTCAGAAGCTGGCGACTGCTAACCTCCTCCGGTTCCTATTGCTGGTCCTGATTCCATGTATCTGTGCTCTCGTTCTCTTGCTGGTGATCCTGCTTTCCTATGTTGGAACATTACAAAAGGTCTATTTTAAATCAAATGGGAGTGAACCTTTGGTCACTGATGGTGAAATCCAAGG 32 0.916239078049947 0.617495440032078 0.34270067920359604 N Y 3.1291192031157298 3.5465630590714 3.1291192031157298 0 0.994489019684056 0.0 Y 0.0 N Y 1133 483 ENSG00000170448 ENSG00000145244 + - 4 4 47916653 47840123 coding coding NFXL1 CORIN 47849257 47596015 - - 0.0 47853112 47809064 - + N - - N SA467 1 0.0 1.0 1 0 1 Y N 0.0 0.0 32 1.30798856785626 1.55679074108979 1.55679074108979 1.30798856785626 4 - - 0.9708765458156527 HCT116-unstranded CGHSA0792 0.50 201979 AGTGACCCTAGTGGAAATTACGGGGGATGGAAGGCCACATGCATTGGAAATAATAGCGCTGCAGCTGTGTCAATGTTGAAACAAGACTATAAAGAAGGAGAAATGACCTTGAAGTCAGCACTTGCTTTAGCTATCAAAGTACTAAATAAGACCATGGATGTTAGTAAACTCTCTGCTGAAAAAG|GATTATCTGAACCTTCTTCTATTGCAAAACATGAAGATAGTTTGCTTAAGGATTTATTTCAAGACTACGAAAGATGGGTTCGTCCTGTGGAACACCTGAATGACAAAATAAAAATAAAATTTGGACTTGCAATATCTCAATTGGTGG 16 0.6503508804715601 0.810982990806167 0.715770624626563 Y Y 3.52936639476796 3.51207644450867 3.51207644450867 0 0.0 0.0 Y 0.00301204819277112 N Y 12577 1194 ENSG00000041357 ENSG00000169684 + - 15 15 78841604 78887611 coding coding PSMA4 CHRNA5 78832747 78857862 + + 0.0 78839040 78873153 + - N - - N SA467 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 15 1.32220583489818 1.02364322701794 1.32220583489818 1.02364322701794 4 - - 0.961756375132133 HCT116-unstranded 0.50 202048 GGGGGATGGAAGGCCACATGCATTGGAAATAATAGCGCTGCAGCTGTGTCAATGTTGAAACAAGACTATAAAGAAGGAGAAATGACCTTGAAGTCAGCACTTGCTTTAGCTATCAAAGTACTAAATAAGACCATGGATGTTAGTAAACTCTCTGCTGAAAAAG|GCCAGGTGTGATGGCTCATGCCTATAATCCCAGTACTTCGGGAGGCCGAGGCGGGCGGATCACCTGAGGTCAGGAATGCGAAACCAGCCTGGCCAACATGGTGAAACATCTCTACTAAAAATACAAAATTAGCCAGACGTGGTGACGCATGCTTG 14 0.747813534636054 0.444877787686621 0.7486579420654291 Y Y 3.52936639476796 3.78361722568259 3.52936639476796 0 0.0 0.0 Y 0.00313479623824453 N N 12577 1194 ENSG00000041357 ENSG00000169684 + - 15 15 78841604 78887611 coding upstream PSMA4 CHRNA5 78832747 78857862 + + 0.0 78839040 78852648 + - N - - N SA467 31 0.987341772151899 11.0 1 3 2 N Y 0.0 0.987341772151899 5 1.15159863039519 1.0947295622275202 1.15159863039519 1.0947295622275202 4 - - 0.905884136717 HCT116-unstranded 0.50 240771 GATCAGCTCCAGGGCCTCCTCCTTGGTCCGGGTGATCTTCTCCTGCCGCCAGGACGAGGGCCGCCGTGACTGGCTGTGCTTCACCAGCAGGTGCGAGCAGCGGACCCTGGCAGGCTCCCCCTGCCCGTTTTTGCCACCACTGCTGCTGTTGCCGCTGGGCCGCTCCCACTGGCTGGCGTTAGTGATGTGGTTGAAGTAGTACACTCGGCCT|CGAATCGCCTCGAACCTGCCGACGCCACCAGCTCCTCACCCGAGCGCTGAACCCCGGTCGCAGTTAACGCTAGGAACCGGAAGCGGAAGTTAAAGTTCGAGGCCGGAAGCCCTGC 94 1.0 0.31710764600921 0.68001624588202 N Y 3.77530342425761 3.36819965647335 3.36819965647335 0 0.0 0.0 Y 0.0 N Y 2729 4824 ENSG00000127445 ENSG00000198258 - + 19 19 9960358 9940791 coding utr5p PIN1 UBL5 9945933 9938568 + + 0.0 9949112 9938660 - + N - 4.96015648662254 N SA467 2 0.0 1.01587301587302 1 1 1 N N 0.0 0.0 63 1.20846769856285 0.7748410537844149 1.20846769856285 0.7748410537844149 4 - 51.6507936507937 0.9627481653959772 HCT116-unstranded 0.50 241420 AGTAGGTGACCCCGCCCCTGGATTCTGGAAGACCTCACCATGGGACGCCCCCGACCTCGTGCGGCCAAGACGTGGATGTTCCTGCTCTTGCTGGGGGGAGCCTGGGC|AGTGAGTACACCGTGCACCTGGGCAGTGATACGCTGGGCGACAGGAGAGCTCAGAGGATCAAGGCCTCGAAGTCATTCCGCCACCCCGGCTACTCCACACAGACCCATGTTAATGACCTCATGCTCGTGAAGCTCAATAGCCAGGCCAGGCTGTCATCCATGGTGAAGAAAGTCAGGCTGCCCTCCCGCTGCGAACCCCCTGGAACCACCTGTACTGTCTCCGGCTG 22 0.628969586911572 0.77281424998331 0.5209902881589079 Y Y 3.30232144676095 3.47911741325579 3.30232144676095 0 0.990682103501186 0.0 Y 0.0 N Y 415 1978 ENSG00000129455 ENSG00000169035 + - 19 19 51504958 51487320 coding coding KLK8 KLK7 51499264 51479729 - - 0.0 51504354 51483743 - + N - - N SA467 1 0.0 1.0 1 0 1 N Y 0.0 0.0 10 0.48338707942514 0.917013724203574 0.917013724203574 0.48338707942514 4 - - 0.918154210940414 HCT116-unstranded 0.50 240720 TCCACTGGGTCCGAATCAGTAGGTGACCCCGCCCCTGGATTCTGGAAGACCTCACCATGGGACGCCCCCGACCTCGTGCGGCCAAGACGTGGATGTTCCTGCTCTTGCTGGGGGGAGCCTGGGC|AGCCCAGGGTGACAAGATTATTGATGGCGCCCCATGTGCAAGAGGCTCCCACCCATGGCAGGTGGCCCTGCTCAGTGGCAATCAGCTCCACTGCGGAGGCGTCCTGGTCAATGAGCGCTGGGTGCTCACTGCCGCCCACTGCAAGATGAATGAGTACACCGTGCACCTGGGCAGTGATACGCTGGGCGACAGGAGAGCTCAGAGGATCAAGGCCTCGAAGTCATTCCGCCACCCCGG 36 0.5864643235907261 0.499415120750334 0.683608575876025 Y Y 3.30232144676095 3.44615838200292 3.30232144676095 0 0.991957761539832 0.0 Y 0.0 N Y 415 1978 ENSG00000129455 ENSG00000169035 + - 19 19 51504958 51487320 coding coding KLK8 KLK7 51499264 51479729 - - 0.0 51504354 51485170 - + N - - N SA467 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 26 0.810384221389205 1.39329217010776 1.39329217010776 0.810384221389205 4 - - 0.955199425339293 HCT116-unstranded 0.50 142141 GAAATTGATCAGTGATAAAATTGGATCACTTGGATTAGGAACTGGAGAAGATGATGACTATGTTGATGATTTTAATAGTACCAGCCATCGCTCAGAGAAAAGTGAGATAAGTATTGGTGAAGAGATAGAAGAAGACCTTTCTGTGGAAATAGATGACATCAATACCAGTGATAAG|GGCAGGCCTTATGAAAACAGGAGAGAACGCAGAGACGGAGGGTTTGTGAAGACGGAGGCATAGATTGGAGTGATGCATTCACAAGTCAAGGGGCACCAGGAACTGCAGACCCCACCGGAAATGGGAAGCGAGGCTGGGGACGGTTCCCTGCACA 5 1.0 0.653437574687218 0.832053191847482 Y Y 3.56232542602083 3.3980196256232102 3.3980196256232102 0 0.993526170798898 0.0 Y 0.0 N N 838 724 ENSG00000213066 ENSG00000112486 + - 6 6 167455906 167553184 coding upstream FGFR1OP CCR6 167412670 167525295 + + 0.0 167447459 167506113 + - N - - N SA467 1 1.0 1.0 1 0 4 N Y 0.0 1.0 9 1.23690223264668 0.995208692934111 1.23690223264668 0.995208692934111 4 - - 0.983000572549352 HCT116-unstranded CGHSA0270 0.50 141395 GAAAACATCGCTGAAATTCATTGATTCCCCGCTCATTGTGGGCAGAAAAAATGCAAGCTGGTTGTAGAAAAAGGAGTGTATGGTTCAGCCCCTTCAGCTCACAGGCAGCGGTAGCAGGAAAGTAGAGGTGACT|CTTGATGCGGTTCAGGACCCCGCTGTTCTCCAGCGTCTGCACCAGCAGGTCCCGCAGCTCCGTGTCCTCCTCGGCCACCACTGCGGCCGCCGTCGCCGCCATCTTGCTTCTCCAAGACAACCGCCGAAGCCGCGCTAACGGCCAACGGCCGCAGCAGGGTACGCTCCGCGCGCGGGC 1 0.6521218905208299 0.6540293708129841 0.7676105512106299 Y Y 3.37758638046158 3.63655728995158 3.37758638046158 0 0.992505379203636 0.0 Y 0.0 N Y 724 838 ENSG00000112486 ENSG00000213066 - + 6 6 167553184 167455906 utr5p coding CCR6 FGFR1OP 167525295 167412670 + + 0.0 167549526 167413002 - + N - 0.516535885930265 N SA467 1 0.0 1.0 1 0 4 N Y 0.0 0.0 6 0.8743619230778259 0.9454482582874052 0.9454482582874052 0.8743619230778259 4 - 9.16666666666667 0.979498791522868 HCT116-unstranded CGHSA0270 0.50 241509 TGACTGTCAAAGCCAAGGCCACAAGCTCAGCGACAACGGCTGCTGCCCCGACACTGCGGCGCCTGGCGCTTTCCTCACGGTCTGGGCTTGAGAGGAAGCCGGAGTCCTTGTCTAAAGTCAGCATCATCAAGAGACTGGGCGCAGCTGCCCTTGTGCCCGAGGCCCAGGACAGCCAGGTCACCAGCACCAAGA|ACTGTGCCCTGTCCACGGTGCCTCCTGCATGTCCTGCTGCCCTGAGCTGTCCCGAGCTAGGTGACAGCGTACCACGCTGCCACCATGAATGAGGTGTCTGTCATCAAAGAAGGCTGGCTCCACAAGCGTGGTGAATACATCAAGACCTGGAGGCCACGGTACTTCCTGCTGAAGAGCGACG 12 0.3681720216533039 0.865291451462174 0.7718268762473119 N Y 3.19293127328835 3.11182925285645 3.11182925285645 1 0.0 0.0 Y 0.0192040653529116 N Y 1736 9218 ENSG00000160392 ENSG00000105221 + - 19 19 40854434 40791443 coding utr5p C19orf47 AKT2 40825443 40736224 - - 0.0 40827935 40771258 - + N - - N SA467 1 0.0 1.0 1 0 2 Y N 0.0 0.0 6 1.0947295622275202 1.14448999687423 1.14448999687423 1.0947295622275202 4 - - 0.950097663391316 HCT116-unstranded 0.50 241093 AGCCAAGGCCAGTCCCCAGCCAGCACTGACTGTCAAAGCCAAGGCCACAAGCTCAGCGACAACGGCTGCTGCCCCGACACTGCGGCGCCTGGCGCTTTCCTCACGGTCTGGGCTTGAGAGGAAGCCGGAGTCCTTGTCTAAAGTCAGCATCATCAAGAGACTGGGCGCAGCTGCCCTTGTGCCCGAGGCCCAGGACAGCCAGGTCACCAGCACCAAGA|GTGAATACATCAAGACCTGGAGGCCACGGTACTTCCTGCTGAAGAGCGACGGCTCCTTCATTGGGTACAAGGAGAGGCCCGAGGCCCCTGATCAGACTCTACCCCCCTTAAACAACTTCTCCGTAGCAGCCCCCTGCTGTCTGTTCCCTCTGCCTGCAGAATGCCAGCTGATGAAGACCGAGAGGCCGCGACCCAACACCTTTGTCATACGCTGCCTGCA 14 0.62466691454799 0.9154989239314928 0.481349646593764 N Y 3.19293127328835 3.90657048781565 3.19293127328835 1 0.0 0.0 Y 0.0 N Y 1736 9218 ENSG00000160392 ENSG00000105221 + - 19 19 40854434 40791443 coding coding C19orf47 AKT2 40825443 40736224 - - 0.0 40827935 40762961 - + N - - N SA467 1 0.0 1.0 1 0 2 Y N 0.0 0.0 17 1.5496821075688298 1.24401086616764 1.5496821075688298 1.24401086616764 4 - - 0.9711171877456852 HCT116-unstranded 0.50 1548 GCCTTCCTACTCGTGAGGAAACTGCCGCCGCTCTGCCACGGTCTGCCCACCCAACGCGAAGACGGTAACCCGTGTGACTTTGACTGGA|ACGGCCGGTTTGTGGGCGATGCTGACCTTGAAAGACAGAAATTTTCAGATTTGAAACTCAACGGACCCCAGGATCACAGTCACCTTCTATATAGCACCATCCCCAGGATGCAGGAGCCGGGGCAGATTGTGGAGACCTACACGGAGGAGGATCCTGAGGGAGCCATGTCTGTAGTCTCTGTGGAGACCTCAGATGATGGGACCACTCGG 35 0.179085919971418 0.912867487664966 0.545371597478729 Y Y 3.3755202409218 3.48809356209009 3.3755202409218 0 0.988674496644295 0.0 Y 0.0 N Y 4006 15029 ENSG00000213593 ENSG00000198561 + - 11 11 57508445 57587018 coding coding TMX2 CTNND1 57480072 57520715 + + 0.0 57480279 57561482 + - N - - N SA467 2 0.222222222222222 1.125 1 1 1 Y Y 0.0 0.222222222222222 8 0.888579190119742 1.34353173546105 1.34353173546105 0.888579190119742 4 - - 0.9104317764205092 HCT116-unstranded 0.50 36603 AGAGATGAGGGTTTACACTGTGATTTTGCTTGCCTGATGTTCAAACACCTGGTACACAAACCATCGGAGGAGAGAGTAAGAGAAATAATTATCAATGCTGTTCGGATAGAACAGGAGTTCCTCACTGAGGCCTTGCCTGTGAAGCTCATTGGGATGAATTGCACTCTAATGAAGCAATACATTGAGTTTGTGGCAGACAGACTTATGCTGGAACTGGGTTTTAGCAAGG|TGCTGGGAGACCGTGAAGTGCAAAGCAGATGGAGTCCAGGCCCTCGGGGAGACAGCACGCCAGTGAGGGAGATGGAGACCAATCACCCACCCAGTGTGCGGGGATGAGAAGCTCGGGAAGGTCTGACCAGCCTTACGTCTTGAAAGGGAATCCCCTGCTTCTGCGTGTCAGGTGTTACTCGGGGTGCGCCAGTGGAAGCGGGAGGCAGTTGCAGCT 323 0.867056740181966 0.7209303174156361 0.5846054190639871 Y Y 3.51360402781852 3.43105836246279 3.43105836246279 3 0.963046005646902 0.0 Y 0.3579243481149311 N Y 45775 1407 ENSG00000171848 ENSG00000163009 + - 2 2 10271545 10351851 coding utr5p RRM2 C2orf48 10262455 10281509 + + 0.0 10269281 10281981 + - N - - N SA467 2 0.522522522522523 1.30973451327434 1 70 2 N Y 0.0 0.522522522522523 226 1.5710080081317 1.5781166416526595 1.5781166416526595 1.5710080081317 4 - - 0.965320270955178 HCT116-unstranded CGHSA0554 0.50 132277 GTTGAACGTAGTAGAGCAGGTGCGGGTTCAGGTTAGCGACCCCGAGAGTACAGTGGCTGTGGCTTTCACACCAACCATTCCGCACTGCAGCATGGCCACCCTTATTGGTCTGTCCATCAAGGTCAAGCTTCTGCGCTCCCTTCCTCAGCGTTTCAAGA|CGGTCCCGGACGCGATGACCCTGAACGGCGGCGGCAGCGGAGCGGGCGGGAGCCGCGGTGGGGGCCAGGAGCGCGAGCGCCGTCGGGGCAGCACACCCTGGGGCCCCGCCCCGCCGCTGCACCGCCGCAGCATGCCGGTGGACGAGCGCGACCTGCAGGCGGCGCTG 3 1.0 0.516798070752253 0.3920374699236579 Y Y 3.38912318237562 3.2739892081275896 3.2739892081275896 0 0.9936903005358392 0.0 Y 0.9810709016075172 N Y 3261 304 ENSG00000166595 ENSG00000166592 + - 16 16 66968326 66959547 coding utr5p FAM96B RRAD 66965959 66955582 - - 0.0 66967517 66959097 - + N - - N SA467 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 17 1.27955403377243 1.02364322701794 1.27955403377243 1.02364322701794 4 - - 0.977131085993738 HCT116-unstranded CGHSA0477 0.50 146756 CCAAATGCGAACCCTGAGCAGCCTGGATTCATTGACGAGCCAGCACCACTGAACCCACCCAAACCAAAGCCAAATCCAAACCCCAAGCAGCCTGATTCCACCGGGGATGACTTTGATTTCACAGATGTTTCTTCATGGTGAACGAAACA|ATGGTGGTTTCGATTTATCCGATGCCCTTCCTGACAATGAAAACAAGAAACCCACTGCAATCCCCAAGAAACCCAGTGCTGGGGATGACTTTGACTTAGGAGATGCTGTTGTTGATGGAGAAAATGACGACCCACGACCAC 14 0.43467142889916704 0.7556114449926229 0.696512417412267 Y Y 3.31998211938081 3.50744965188915 3.31998211938081 0 0.0 0.0 Y 0.0 N Y 251 2093 ENSG00000223773 ENSG00000002586 + - X X 2575270 2659350 intron coding CD99P1 CD99 2527389 2609220 + + 0.0 2544683 2632463 + - N - - N SA467 1 0.0 1.0 1 0 1 N Y 0.0 0.0 10 1.08762092870656 0.93123099124549 1.08762092870656 0.93123099124549 4 - - 0.931552480521008 HCT116-unstranded 0.50 130257 CCAGGCCGCATCTTGCTGTGGTTTGGAACCTTCTTGTGTCCTGTTCAACTCAGAAACCCCACAGATTCTTGCTTTTCTGCAGGCTTGGCCTCTAGGTTGGCTGGGTTGCAGAGCAGTCTTGCTTCTAGGTTGTCATGAGCTGCGTGGCTTCCAGAGCT|CTGGTCACTGCGCGCACTTATCTCAGGTGGCGGGGCCCGTGGACGGCGGCGACCTGGATCCTGTGGCCTGCTTCCTGAGCTGGTGCCGGCGGGTGGGGCTGGAGCTGAGTCCCAAGGTGAGCGAGCGAGCCGGCGGGCGGAGGACCCGCGGCGGGGCGCGGGCTGCCCTGACCAGC 12 0.8266909917860308 0.9613400685387692 0.83532673426648 Y Y 3.5844100027689803 3.46977054206091 3.46977054206091 0 0.0 0.0 Y 0.0 N N 462 1431 ENSG00000103034 ENSG00000103037 + - 16 16 58547532 58554431 intron intron NDRG4 SETD6 58496750 58549383 + + 0.0 58544826 58549669 + - N 0.141453336787407 0.144346878213671 N SA467 1 0.222929936305732 1.0 1 0 2 N Y 0.0 0.222929936305732 11 0.817492854910163 1.10183819574848 1.10183819574848 0.817492854910163 4 2.45454545454545 4.90909090909091 0.9681902932018068 HCT116-unstranded 0.50 79552 AAGGCAGATGTATCTTTCGTTCTCTTTTTTGACTGTAATAATGAGATTTGTATTGAACGATGTCTTGAGAGGGGAAAGAGTAGTGGTAGGAGTGATGACAACAGAGAGAGCTTGGAAAAGAGAATTCAGACCTACCTTCAGTCAACAAAGCCAATTATTGACTTATATGAAGAAATGGGGAAAGTCAAGAAAATAGATGCTTCTAAATCTGTTGATGAA|CCCGCGCAAGTGGCAGAACAGCATCCGCCACAATCTCACGCTCAACGACTGCTTCGTCAAGGTGCCCCGCGAGCCGGGCAACCCGGGCAAGGGCAACTACTGGACGCTGGACCCCGCGGCCGCAGACATGTTCGACAACGGCAGCTTCCTGCGGCGCCGCAAGCGCTT 27 0.355018848651545 0.3955982003914911 0.540120471124106 N Y 3.25360004855864 3.4823005609514905 3.25360004855864 1 0.0 0.0 Y 0.0 N N 4996 383 ENSG00000162368 ENSG00000186790 + - 1 1 47844511 47883723 coding coding CMPK1 FOXE3 47799469 47881744 + + 0.0 47840965 47882320 + - N - - N SA467 4 0.0 1.86206896551724 1 15 2 N N 0.0 0.0 29 1.5923339086945802 1.29377130081434 1.5923339086945802 1.29377130081434 4 - - 0.938394021548717 HCT116-unstranded 0.50 78937 ACTGTAATAATGAGATTTGTATTGAACGATGTCTTGAGAGGGGAAAGAGTAGTGGTAGGAGTGATGACAACAGAGAGAGCTTGGAAAAGAGAATTCAGACCTACCTTCAGTCAACAAAGCCAATTATTGACTTATATGAAGAAATGGGGAAAGTCAAGAAAATAGATGCTTCTAAATCTGTTGATGAA|ATTTCGAGTCTTCATTTCTGTCTTGCCTGGAGCACTTGCTAAGGGACTGGCCCAGAAGTACTCGGTGAGCAATGAAGCCTGAACTGAGGCCAGGAGAACTGAAGGAGGGATGGATCTGGGACCCATGTGGAATTGACGGGACTTGGCAC 17 0.745814312350582 0.763233298018125 0.20093151701184306 N Y 3.25360004855864 3.4378445805779303 3.25360004855864 6 0.0 0.0163416861919702 Y 0.0297247925022834 N N 4996 383 ENSG00000162368 ENSG00000186790 + - 1 1 47844511 47883723 coding upstream CMPK1 FOXE3 47799469 47881744 + + 0.0 47840965 47879778 + - N - - N SA467 1 0.810810810810811 1.0 1 0 2 N N 0.0 0.810810810810811 12 1.36485763602392 1.05207776110177 1.36485763602392 1.05207776110177 4 - - 0.967175795490379 HCT116-unstranded 0.50 79821 AGAAACAAAACAATCAGTGTGGATAAGAAATATTCAGCTTGGTTTCTTTGGAAGTATATTTGGATTAATGGGTGTATACATTTATGATGGAGAACTGGTATCAAAGAATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTGGTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAACGGCTTAATT 7 0.350471129263254 0.71025785539932 0.16666414758343398 N Y 3.73233517440054 3.6669556681247206 3.6669556681247206 0 0.0 0.0 Y 0.0032467532467531602 N Y 1795 3810 ENSG00000117620 ENSG00000156875 + - 1 1 100492535 100548933 coding coding SLC35A3 HIAT1 100435345 100503653 + + 0.0 100480976 100515465 + - N - - N SA467 1 0.0 1.0 1 0 1 Y N 0.0 0.0 8 0.867253289556868 0.9881000594131528 0.9881000594131528 0.867253289556868 4 - - 0.921053668458942 HCT116-unstranded 0.50 162628 GTGCCGCTGCTGCTGCGCAACTATTCACACTACTTCCAGAAGGCCCGAGACACGCTCTACATGGTGTGGGGCCAGGGCAGGCACATGGACCGGGTGCTCGGCGGCCGCACCTACCGCACGCTGCTGCAGCTCACCAGGATGTACCCCGGCCTGCAGGTGTACACCTTCACGGAGCGCATGATGGCCTACTGCGACCAGATCTTCCAGGACGAGACGGGCAAGAACCG|GTGTGAACCCACATCCCTGCCCCCAGGGCCACCTGCAGGACGCCGACACCTACCCCTCAGCAGACGCCGGAGAGAAATGAGTAGCAACAAAGAGCAGCGGTCAGCAGTGTTCGTGATCCTCTTTGCCCTCATCACCATCCTCATCCTCTACAGCTCCAACAGTGCCAATGAGGTCTTCCATTACGGCTCCCTGCGGGGCCGTAGCCGCCGAC 45 0.92765065550303 0.944759451111965 0.548935990408816 Y Y 3.54400240599166 3.20703807585194 3.20703807585194 1 0.0 0.0 Y 0.0 N Y 4183 2380 ENSG00000136840 ENSG00000160408 + - 9 9 130679317 130667687 coding coding ST6GALNAC4 ST6GALNAC6 130670165 130647600 - - 0.0 130674547 130658611 - + N - - N SA467 2 0.0782608695652174 1.41463414634146 1 17 1 Y Y 0.008733624454148471 0.0782608695652174 41 1.6278770762993702 1.6349857098203302 1.6349857098203302 1.6278770762993702 4 - - 0.935698632206094 HCT116-unstranded 0.50 249115 GTAATGGCAGCATTTGTCTTGATATTCTACGATCACAGTGGTCTCCAGCACTAACTATTTCAAAAGTACTCTTGTCCATCTGTTCTCTGTTGTGTGATCCCAATCCAGATGATCCTTTAGTGCCTGAGATTGCTCGGATCTACAAAACAGATAGAGAAAA|AGTGAAGACATTTCCACCTGGACACCTGACCATGTGCCTGCCCTGAGCAGCGAGGCCCACCAGGCATCTCTGTTGTGGGCAGCAGGGCCAGGTCCTGGTCTGTGGACCCTCGGCAGTTGGCAGGCTCCCTCTGCAGTGGGGTCTGGGCCTCGGCCCCACCATGTCGAGCCTCGGCGGTGGCTCCCAGGATGCCGGCGGCAGTAGCA 37 1.0 0.829749770406666 0.7697796544469521 Y Y 3.58424216889964 3.47080361183081 3.47080361183081 1 0.993767029972752 0.0 Y 0.0 N Y 6253 2038 ENSG00000131508 ENSG00000171604 + - 5 5 139008018 139063467 coding utr5p UBE2D2 CXXC5 138906016 139026884 + + 0.0 139003046 139059949 + - N - - N SA467 1 0.0591133004926108 1.0 1 0 2 Y Y 0.0 0.0591133004926108 27 1.13738136335327 1.4430526047544598 1.4430526047544598 1.13738136335327 4 - - 0.976098644792047 HCT116-unstranded 0.50 190489 GGCATTTCACCAGATGAACTTAAAGATGAACTACCTGAACGACAACCTCGCTTCATTGTGTATAGTTATAAATATCAACATGATGATGGAAGAGTTTCATATCCTCTGTGCTTTATTTTCTCCAGTCCTGTTGGATGTAAGCCTGAACAACAGATGATGTATGCTGGAAGTAAGAATAAGCTAGTCCAGACAGCTGAACTAACCAAG|ATTATAGCATTTGATGAGCTGAAGACTGATTACAAGAATCCTATAGACCAGTGTAATACCCTGAATCCCCTTGTACTCCCAGAGTACCTCATCCACGCTTTCTTCTGTGTCATGTTTCTTTGTGCAGCAGAGTGGCTTACACTGGGTCTCAATATGCCCCTCTTGGCATATCATATTTGGAGGTATATGAGTAGACCAGTGATGAGTGGCCCAGGACTCTA 19 1.0 0.735646852263168 0.0907634601745601 N N 3.4309786568760896 3.3733608154261803 3.3733608154261803 1 0.0 0.0 Y 0.0 N Y 4369 8468 ENSG00000197045 ENSG00000100528 + - 14 14 54955914 54908149 coding coding GMFB CNIH 54941202 54893654 - - 0.0 54946504 54903155 - + N - - N SA467 2 0.0 1.24 1 6 3 Y N 0.0 0.0 25 1.4359439712335 1.5212475734850002 1.5212475734850002 1.4359439712335 4 - - 0.9625434536273928 HCT116-unstranded 0.50 190863 GGCGACTGGGCCAGGCGCCGGGGCAGGAAGGGAGGCGGCCGCCGTGCCATTCTTAAAGGCGCCCGAGTGTAGGCGACAGGCCGCTGACGGCCGGAAGGAAAATGAGTGAGTCTTTGGTTGTTTGTGATGTTGCCGAAGATTTAGTGGAAAAGCTGAGAAAGTTTCGTTTTCGCAAAGAAACGAACAACGCTGCTATTATAA|CTTGTACTCCCAGAGTACCTCATCCACGCTTTCTTCTGTGTCATGTTTCTTTGTGCAGCAGAGTGGCTTACACTGGGTCTCAATATGCCCCTCTTGGCATATCATATTTGGAGGTATATGAGTAGACCAGTGATGAGTGGCCCAGGACTCTATGACCCTACAACCATCATGAATGCAGATATTCTAGCATATTGTCAGAAGGAAGGATGGTGCAAATTAGCTTTTTATCTTCTAGCATTTTTTTACTACCTATATGGCATGATCTATGTTTTG 6 1.4953323681064801e-07 0.513362658072967 0.403266332634956 N Y 3.41319935075004 3.48490106682458 3.41319935075004 0 0.0 0.0 Y 0.0 N Y 4369 8468 ENSG00000197045 ENSG00000100528 + - 14 14 54955914 54908149 coding coding GMFB CNIH 54941202 54893654 - - 0.0 54950389 54898938 - + N - - N SA467 1 0.0 1.0 1 0 3 N N 0.0 0.0 15 1.13027272983231 0.909905090682616 1.13027272983231 0.909905090682616 4 - - 0.963057543209837 HCT116-unstranded 0.50 190498 TACCTGAACGACAACCTCGCTTCATTGTGTATAGTTATAAATATCAACATGATGATGGAAGAGTTTCATATCCTCTGTGCTTTATTTTCTCCAGTCCTGTTGGATGTAAGCCTGAACAACAGATGATGTATGCTGGAAGTAAGAATAAGCTAGTCCAGACAGCTGAACTAACCAAG|CTTGTACTCCCAGAGTACCTCATCCACGCTTTCTTCTGTGTCATGTTTCTTTGTGCAGCAGAGTGGCTTACACTGGGTCTCAATATGCCCCTCTTGGCATATCATATTTGGAGGTATATGAGTAGACCAGTGATGAGTGGCCCAGGACTCTATGACCCTACAACCATCATGAATGCA 4 0.290509843447172 0.8473959393330871 0.0817245384343901 N Y 3.4309786568760896 3.48490106682458 3.4309786568760896 1 0.0 0.0 Y 0.0 N Y 4369 8468 ENSG00000197045 ENSG00000100528 + - 14 14 54955914 54908149 coding coding GMFB CNIH 54941202 54893654 - - 0.0 54946504 54898938 - + N - - N SA467 2 0.0 1.2 1 1 3 Y N 0.0 0.0 5 1.08051229518561 0.8601446560359101 1.08051229518561 0.8601446560359101 4 - - 0.909309305587391 HCT116-unstranded 0.50 190861 GGCGGCCGCCGTGCCATTCTTAAAGGCGCCCGAGTGTAGGCGACAGGCCGCTGACGGCCGGAAGGAAAATGAGTGAGTCTTTGGTTGTTTGTGATGTTGCCGAAGATTTAGTGGAAAAGCTGAGAAAGTTTCGTTTTCGCAAAGAAACGAACAACGCTGCTATTATAA|CTTGTACTCCCAGAGTACCTCATCCACGCTTTCTTCTGTGTCATGTTTCTTTGTGCAGCAGAGTGGCTTACACTGGGT 6 0.00047110371625344003 0.513362658072967 0.403266332634956 N Y 3.41319935075004 3.48490106682458 3.41319935075004 0 0.0 0.0 Y 0.0 N Y 4369 8468 ENSG00000197045 ENSG00000100528 + - 14 14 54955914 54908149 coding coding GMFB CNIH 54941202 54893654 - - 0.0 54950389 54898938 - + N - - N SA467 1 0.0 1.0 1 0 3 N N 0.0 0.0 7 1.3719662695448798 0.93123099124549 1.3719662695448798 0.93123099124549 4 - - 0.963057543209837 HCT116-unstranded 0.50 190522 GCAGGAAGGGAGGCGGCCGCCGTGCCATTCTTAAAGGCGCCCGAGTGTAGGCGACAGGCCGCTGACGGCCGGAAGGAAAATGAGTGAGTCTTTGGTTGTTTGTGATGTTGCCGAAGATTTAGTGGAAAAGCTGAGAAAGTTTCGTTTTCGCAAAGAAACGAACAACGCTGCTATTATAA|CTTGTACTCCCAGAGTACCTCATCCACGCTTTCTTCTGTGTCATGTTTCTTTGTGCAGCAGAGTGGCTTACACTGGGTCTCAATATGCCCCTCTTGGCATATCATATTTGGAGGTATATGAGTAGACCAGTGATGAGTGGCCCAGGACTCTATGAC 6 0.7391432358630191 0.513362658072967 0.403266332634956 N Y 3.41319935075004 3.48490106682458 3.41319935075004 0 0.0 0.0 Y 0.0 N Y 4369 8468 ENSG00000197045 ENSG00000100528 + - 14 14 54955914 54908149 coding coding GMFB CNIH 54941202 54893654 - - 0.0 54950389 54898938 - + N - - N SA467 2 0.0 1.11111111111111 1 1 3 N N 0.0 0.0 9 1.20135906504189 1.06629502814369 1.20135906504189 1.06629502814369 4 - - 0.981167792118438 HCT116-unstranded 0.50 241037 TCAGGAGCAGATTTTGAGGTATTCCTGGAGTGGAGAGCCACTCTTTTTGACCTGCCCTACATCAGAAGTCACCGAGCTCCCAGCCTGCAGCCAGTGTGGAGGCCAAAGGATATTTGAGTTTCAGCTTATGCCAGCACTGGTCAGCATGCTCAAGAGTGCTAATTT|AGCTGCCCGAAACCATGTTAATAGAATGTGCCTGGCAGCTGATGTTCCTCTTATTGAAAGTGGAACAGCTGGGTATCTTGGACAAGTAACTACTATCAAAAAGGGTGTGACCGAGTGTTATGAGTGTCATCCTAAGCCGACCCAGAGAACCTT 8 0.946496972869902 0.96389223931314 0.5970854154389871 Y Y 3.64400585547602 3.60426060610801 3.60426060610801 0 0.993484541151884 0.0 Y 0.0 N Y 2255 4371 ENSG00000126249 ENSG00000126261 + - 19 19 34917287 34960853 coding coding PDCD2L UBA2 34895289 34919264 + + 0.0 34912572 34925773 + - N - - N SA467 2 0.0 1.6666666666666698 1 6 1 Y Y 0.0 0.0 9 1.00231732645507 0.888579190119742 1.00231732645507 0.888579190119742 4 - - 0.910495018602642 HCT116-unstranded 0.50 81102 GAACCAGCTTCTTCCACTGGGCCACTAGGTCCCTGGCAAAGCTTCCAACATGCTCGTGTTTTCGCAAGCTATTTACTGTTTTCCCAACCCCAGTCTCCGCAAGAATGTCTACTGTAATAGGCAGGGTGGAGAGTTTCTTCAAATATTTCAATAG|CAGCTACTCCCATCGAAGCTTTAAGTGGCTTGAGGTCCAAGGACTTGAATATGGCCAGGATCCTTTCACAGAACACACAACAGAATTGCACATTTCACTGAAAACTTTTTATTGCTCTTTTGGATAGAAACGGGAATTTATTTGCCAGGAAGGATGA 7 0.8131880416281949 0.9548068871579072 0.18064003825985 N Y 3.32320511986986 3.7574444125448494 3.32320511986986 0 0.993527306027306 0.0 Y 0.5404387279387279 N N 14534 48231 ENSG00000011007 ENSG00000142676 - + 1 1 24088549 24022915 coding downstream TCEB3 RPL11 24069645 24018269 + + 0.0 24075511 24023000 - + N - - N SA467 1 0.0 1.0 1 0 3 N N 0.0 0.0 8 1.03786049405986 1.03786049405986 1.03786049405986 1.03786049405986 4 - - 0.9850080951879742 HCT116-unstranded CGHSA0320 0.50 78696 GAAAAGATTGCTGTCCACTGCACAGTTCGAGGGGCCAAGGCAGAAGAAATCTTGGAGAAGGGTCTAAAGGTGCGGGAGTATGAGTTAAGAAAAAACAACTTCTCAGATACTGGAAACTTTGGTTTTGGGATCCAGGAACACATCGATCTGGGTATCAAATATGACCCAAGCATTGGTATCTACGGCCTGGACTTCTATGT|GCTATTGAAATATTTGAAGAAACTCTCCACCCTGCCTATTACAGTAGACATTCTTGCGGAGACTGGGGTTGGGAAAACAGTAAATAGCTTGCGAAAACACGAGCATGTTGGAAGCTTTGCCAGGGACCTAGTGGCCCAGTGGAAGAAGCTGGTTCCTGTGGAACGAAATGCTGAGCCT 271 0.502002233570833 0.953440463854486 0.512795010340239 N Y 3.8097595335968 3.3551310813528503 3.3551310813528503 1 0.9943968456316148 0.0 Y 0.9943968456316148 N Y 48231 14534 ENSG00000142676 ENSG00000011007 + - 1 1 24022915 24088549 coding coding RPL11 TCEB3 24018269 24069645 + + 0.0 24021281 24075511 + - N - - N SA467 4 0.0 2.176 1 172 3 Y N 0.0 0.0 250 1.4643785053173302 1.27955403377243 1.4643785053173302 1.27955403377243 4 - - 0.9098308281695692 HCT116-unstranded CGHSA0320 0.50 1363 CAGTCCTCTTCAACATCATCATCATTTTCCTCATGTTCTTCAACACCTTCGTCTTCCAGGCTGGCCTGGTCAACCTCCTATTCCATAAGTTCAAAGGGACCATCATCCTGACAGCTGTGTACTTTGCCCTCAGCATCTCCCTTCATGTCTGGGTCATGAACTTACGCTGGAAAAACTCCAACAGCTTCATATGGACAGATGGACTTCAAATGCTGTTTGTATTCCAGAGACT|AGGTAAACGGTTGTCCTCCACCCCGCTGGAAATCCTGTTCTTTCTGAACGGGTGGTATAATGCTACCTATTTCCTGCTGGAACTTTTCATATTTCTGTATAAAGGTGTCCTGCTACCATATCCAACAGCTAACCTAGTACTGGATGTGGTGATGCTCCTCCTTTAT 14 0.7135347225183392 0.7935248184268591 0.574189981205731 Y Y 3.62617734898681 3.6000045358490698 3.6000045358490698 0 0.0 0.0 Y 0.0 N Y 2543 1113 ENSG00000149483 ENSG00000187049 + - 11 11 61136683 61166335 coding coding TMEM138 TMEM216 61129473 61159159 + + 0.0 61135470 61160703 + - N - - N SA467 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 19 1.54257347404787 1.20135906504189 1.54257347404787 1.20135906504189 4 - - 0.979958258658337 HCT116-unstranded 0.50 992 TCATGTTCTTCAACACCTTCGTCTTCCAGGCTGGCCTGGTCAACCTCCTATTCCATAAGTTCAAAGGGACCATCATCCTGACAGCTGTGTACTTTGCCCTCAGCATCTCCCTTCATGTCTGGGTCATGAACTTACGCTGGAAAAACTCCAACAGCTTCATATGGACAGATGGACTTCAAATGCTGTTTGTATTCCAGAGACTAG|GTAAATCGGCCGCAGAAAAGACCAATGCTAACTCCACCCTGCATTTGCAGAGATCCGTCGCTCACACCTTTTCTTGTCTTCCGTTGAAAAAAGAGAATCGTGGGAGTAGGACCTATTTGCCAATCTCCTGGTAACACTATCACAACTGGCCACTTCCGCCCAACGCCCGGTAGTCTGAGAGCCTCCAAGGTCCTCCCCCGCACCCC 7 0.0037598636884053796 0.395291450828678 0.537994858433966 Y Y 3.63552422018169 3.58064844605001 3.58064844605001 0 0.0 0.0 Y 0.0 N N 2543 1113 ENSG00000149483 ENSG00000187049 + - 11 11 61136683 61166335 coding utr5p TMEM138 TMEM216 61129473 61159159 + + 0.0 61135470 61159681 + - N - 0.100186718300146 N SA467 1 0.0 1.0 1 0 2 N Y 0.0 0.0 11 1.39329217010776 0.9738827923712372 1.39329217010776 0.9738827923712372 4 - 1.81818181818182 0.963057543209837 HCT116-unstranded 0.50 152433 CCACAGCCACCACACTCTGTCCTCAAGTTCCTGCAGGACGTGTTTGGCAGCCCGGCCACAGCTGCCATCTTCTACCACACAGACATGATGGCTCTCATTGACATCACTGTGCGGCACATCGCAGACCTGTCACCAGGAGACA|AGATGGCCTGCACAGCGTGACGGCGCAGTGTGTGCTGCGCGTGGTCATCATCACGGAGGAGTTGCTGGCCAACAGCCTGACCGTGCGCCTTGAGAACATGTGGCAGGAGCGCTTCCTGTCACCGCTGCTGGGCCGCTTCCTCGAGGGCGTGGCTGCGGTGCTCGCTACGCCCGCTGAGGACGTCTTCATCTTCAACATCCAGAACGACACAGACGTAGGGGGCA 5 0.976825627787746 0.800215202381166 0.741303763262004 Y Y 3.56654164348642 3.3069083865871205 3.3069083865871205 0 0.0 0.0027247956403269 Y 0.0 N Y 5041 1090 ENSG00000213672 ENSG00000008300 + - 3 3 48723797 48700348 coding coding NCKIPSD CELSR3 48701364 48673902 - - 0.0 48715997 48694781 - + N - - N SA467 1 0.0 1.0 1 0 1 N Y 0.0 0.0 7 0.867253289556868 1.06629502814369 1.06629502814369 0.867253289556868 4 - - 0.9652158300399092 HCT116-unstranded 0.50 1597 CTACATGGCTGTCATGTTTACCCTCTTTGGTCTTAACTTATTATTCAAGATCAAACCAGAAGATGCCATGGACTTTGGCATCTCCCTTCTCTTCTATGGCCTCTACTATGGAGTTCTGGAACGGGACTTTGCAGAAATGTGTGCAGACTACATGGCATCTACCATAGGG|AGAAGAGGACGTTGTCACAGATAAAGAGCCAGGCTCACCAGCTCCTGACGCATGCATCATGACCATGAGACACAACTGGACACCAGACCTCAGCCCTTTGTGGGTCCTGCTCCTGTGTGCCCACGTCGTCACTCTCCTGGTCAGAGCCACACCTGTCTCGCAGACCACCACAGCTGCCACTGCCTCAGTTAGAAGCACAAAGGACCCCTGCC 16 0.592302349661331 0.36812724670146896 0.466741289118265 Y Y 3.52105259334297 3.62101619003398 3.52105259334297 0 0.0 0.0 Y 0.0 N Y 807 963 ENSG00000137522 ENSG00000137496 + - 11 11 71708643 71716761 coding utr5p RNF121 IL18BP 71639747 71709587 + + 0.0 71701763 71710973 + - N - - N SA467 1 0.0 1.0 1 0 1 N Y 0.0 0.0 10 1.15159863039519 1.52835620700596 1.52835620700596 1.15159863039519 4 - - 0.9463905752250268 HCT116-unstranded 0.50 241156 GGGACACAGCCAGCCCTGTCCCTGCCTAGCCTTTAGCCCTGTCCCCACTCACGTGGCTTCTCAGCGGGCTGCATGGAATGTCTGGTAGCTCACCACACTTCTGGCTTCCATTTGTCTTCACTCAACGTCAGGGTGGGGGAGTGGTGCTGGCCAATCACAGGAGAGAGC|CTGTTCCCACAGGCTCCATTATTCAAACTTTGGGGGAGGAAATCAGGGCTGGACAGATCATCAACTGCTGCTGCTGACAGACTGTGTTCCTGCCATGATGGGGACAGGCCTGCCCCAAACCAGGGTGGAGTGAAGGGGTCAGCCCAGGCTTAGTGGGAGCCCCTTAGTCTTAC 15 0.932003962381706 0.395744503610418 0.7665942665652341 Y Y 3.22423474015539 3.44086924197409 3.22423474015539 0 0.0 0.0 Y 0.0 N N 7876 190 ENSG00000105341 ENSG00000177191 + - 19 19 41946622 41934635 utr3p utr5p ATP5SL B3GNT8 41937223 41931265 - - 0.0 41937997 41934624 - + N - 16.2979066022544 N SA467 1 0.0 1.0 1 0 1 N Y 0.0 0.0 10 1.30798856785626 1.18714179799998 1.30798856785626 1.18714179799998 4 - 0 0.971160632212472 HCT116-unstranded 0.50 63540 AGACAGGGGGAGAGGAAGGGCCTGGTAGAGGAGGGGATCTTTCTTGTCATTCAAGTTAGGGCAGCCACGAATGTCCCAAATCTGTTGGAGATGTCAGAATGCAGGGACCGCCAGGTGGGCACGGAGGCTCGAGCCTTGGCGTCACCCACGTCGTCTGTGCAGTGGACAGACAGGCACTGCAAGTGGCTGCCAGGCTGGGATGCTGAGGCCTTGTTTGCAGGGAGGTCGTGGG|CGGGACCACAGAAGCTCAAGCCCTTCTTGCAGGCAGTGTTCCTAGAAGGACTGGAGGGGAAGCTACTTCTCCGGACACCTGGGGTCAGCAGAACAGGCCTCTCCAGTGGGCCAGTGGTGGAAAGGTCAAGGATTTGGGCATTACAGATTCAGATTCAA 9 0.937805701871566 0.9794946468859258 0.8512282985450459 Y Y 3.2038455805864303 3.5597647729410897 3.2038455805864303 0 0.0 0.0 Y 0.0 N N 1220 5319 ENSG00000169184 ENSG00000180957 - + 22 22 28197486 28316122 coding downstream MN1 PITPNB 28144265 28202413 - - 0.0 28147084 28202379 + - N - - N SA467 1 0.286624203821656 1.0 1 0 1 N Y 0.167441860465116 0.286624203821656 5 1.0947295622275202 1.05918639462273 1.0947295622275202 1.05918639462273 4 - - 0.9337330327287392 HCT116-unstranded 0.50 248748 GAGCAATCAAACAATTGGATTATGAATGGAAGGTTGTAAACCCATATTATTTGCGTGTACGAAGGAAGAATCCTGTGACAAGCACTTACTCCAAAATGAGTCTACAGTTATACCAAGTGGATAGTAGAACTTATCTACTGGATTTCCGTAGTATTGATGA|ATGGCTTCCTTTGGGTGGAAGAGGAAAATTGGTGAGAAGGTCTCAAAGGTCACTTCCCAGCAGTTTGAAGCTGAAGCTGCTGATGAGAAGGATGTAGTTGACAACGATGAAGGGAACTGGCTTCATGCCATTAAACGTAGGAAAGAAATTCTT 2 0.8090601869447641 0.27988655657757106 0.474242071469137 Y Y 3.53721618787652 3.19975734419684 3.19975734419684 0 0.993484867407685 0.0 Y 0.0 N Y 2087 532 ENSG00000132356 ENSG00000113638 + - 5 5 40798476 40756077 coding coding PRKAA1 TTC33 40759481 40714577 - - 0.0 40764616 40747121 - + N - 1.71149117249887 N SA467 1 0.0 1.0 1 0 1 N Y 0.0 0.0 8 0.8246014884311209 0.995208692934111 0.995208692934111 0.8246014884311209 4 - 5.125 0.91706129771583 HCT116-unstranded 0.50 176202 GAGGAGGAAGATGCTGCAGTAGGGGAACAGGAGGGAGCACGTGAGAGAGAGGAGTTGCCAAAAGAAATACCTAAGCAGGACCACATTCACAGAGTGACCGCCTTGGTGAATGGGAACATAGAACAGATGGGAAATGGATTCCAGGATCTTCAA|GAGGAACCGCTGCTGCTGGCCGAACTCAAGCCCGGGCGCCCCCACCAGTTTGATTGGAAGTCCAGCTGTGAAACCTGGAGCGTCGCCTTCTCCCCAGATGGCTCCTGGTTTGCTTGGTCTCAAGGACACTGCATCGTCAAACTGATCCCCTGGCCGTTGGAGGAGCAGTTCATCCCTAAAGGGTTTGAAGCCAAAAGCCGAAGTAGCAAAAATGAGACGAAA 4 0.7437282187617891 0.307750365733215 0.628505211432345 Y Y 3.38912318237562 3.30484224704734 3.30484224704734 0 0.0 0.0 Y 0.0 N Y 2006 7650 ENSG00000176834 ENSG00000176871 + - 12 12 118573831 118500235 coding utr5p VSIG10 WSB2 118501398 118470712 - - 0.0 118506182 118490283 - + N - - N SA467 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 5 0.8956878236407 1.2155763320838102 1.2155763320838102 0.8956878236407 4 - - 0.939949773147157 HCT116-unstranded 0.50 38050 CAGCTCTCCACTGGATATCAGCATCAAAGGCCAGATGATTCGTGACCTTCTGAATCTGGCAGGTTTTGTCCTGCCCAATGCAGAGGATATCATTTCCAGCCCCAGCAGCTGCAGCAGCTCCACCACCAGCCTGCCCACCTCCCCTGGGGACAAATGTCGAATGGCTCCAGAGCATGTCACTGCACAGAAGATGAAGAAAGCCTATTATCTGACCCAGAAAATTCCTGATCAGG|TGCTTTACAAGGCCAAGTACGGTCCAATGTGGATGTCCTACTTAGGGCCTCAGATGCACGTGAACCTGGCCAGTGCCCCGCTCTTGGAGCAAGTGATGCGGCAAGAGGGCAAGTACCCAGTACGGAACGACATGGAGCTATGGAAGGAG 3 0.00626408237164955 0.7502953749861959 0.935683316063597 Y Y 3.48743121468078 3.82232940528072 3.48743121468078 1 0.0 0.0 Y 0.0 N Y 2679 230 ENSG00000135912 ENSG00000135929 + - 2 2 219620139 219680016 coding coding TTLL4 CYP27A1 219575568 219646472 + + 0.0 219616529 219674300 + - N - - N SA467 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 6 0.9454482582874052 0.6966460850538779 0.9454482582874052 0.6966460850538779 4 - - 0.91008485298034 HCT116-unstranded 0.50 38049 GCCGTGGTCAGTTTGAACGAATTTTTCCTTCTCATATCTCCTCTCGCTATCTCCGCTTTTTTGAGCAGCCACGATATTTCAACATTCTCACCACCCAATGGGAACAGAAATACCATGGCAACAAGCTTAAAGGAGTAGATCTGCTCCGGAGTTGGTGCTACAAAGGGTTCCACATGGGAGTTGTCTCTGATTCTGCTCCAGTG|GTGCTTTACAAGGCCAAGTACGGTCCAATGTGGATGTCCTACTTAGGGCCTCAGATGCACGTGAACCTGGCCAGTGCCCCGCTCTTGGAGCAAGTGATGCGGCAAGAGGGCAAGTACCCAGTACGGAACGACATGGAGCTATGGAAGGAGCACCGGGACCAGCACGACCTGACCTATG 8 1.0 0.692033238035744 0.253445790288983 Y Y 3.4378445805779303 3.80041266240192 3.4378445805779303 0 0.0 0.0 Y 0.0 N Y 2679 230 ENSG00000135912 ENSG00000135929 + - 2 2 219620139 219680016 coding coding TTLL4 CYP27A1 219575568 219646472 + + 0.0 219617908 219674300 + - N - - N SA467 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 11 1.37907490306584 1.2155763320838102 1.37907490306584 1.2155763320838102 4 - - 0.988904998808694 HCT116-unstranded 0.50 63788 ATGGAATAGAGATTCCTGAAAGGACAGATTATGAAATGGACAGGCAATTCCTCATAGAAATAATGGAAATCAATGAAAAACTCGCAGAAGCTGAAAGTGAAGCTGCCATGAAAGAGATTGAATCCATTGTCAAAGCTAAACAGAAAGAATTTACTGACAATGTGAGCAGTGCTTTTGAACAAG|TAAATCTTGCTGCTGCCCACTCTGGGTTTGCACTGCCTTTATGAGCCATAACACCCACCGCGAGGATCTGCTGCTTCATTCCTGAAGTCAGCAAGATCACAAACGCACCTGGCAGAACAAACAACTCCTGACAGGCCACCTTTAA 8 1.0 0.5115763369556571 0.6885061327733959 Y Y 3.30232144676095 3.08148430784579 3.08148430784579 0 0.0 0.0 Y 0.0030395136778115198 N N 203 1826 ENSG00000100209 ENSG00000159873 + - 22 22 29153503 29185283 coding upstream HSCB CCDC117 29138019 29168662 + + 0.0 29147276 29165397 + - N - - N SA467 1 1.0 1.0 1 0 1 N Y 0.0 1.0 8 1.00942595997603 1.0165345934969798 1.0165345934969798 1.00942595997603 4 - - 0.968747179301106 HCT116-unstranded 0.50 240221 GGGGGCTGAGGCACTCATCATGCAGGCCCGATCTGCCCACCGTGACTGTGAGGACGTGGCCAAGGCCGCCCTGCGGGACCTGGGTTGTCATGTCGAGCTCCGAGAGCTGTGGACAGGCCAGAGGGGCAACCTGGCGCCATGACCCCAGGCCCAGTCTGGGCCGTGACTCTG|GGACCGAGTCTCCTGCCATTCCGAGCAGGCCTGGTATGGGTAATGGTGTGAAGGAAGGCCCGGTGCGATTGCATGAGGATGCTGAGGCTGTCCTGTCCTCGTCCGTCTCATCAAAGCGTGACCACAGGCAAGTGCTCAGCTCCCTGCTGTCTGGGGCCCTGGCTGGTGCCCTTGCCAAAACAGCGGTAGCTCCCCTGGACCGAACCAAAATCATCTT 20 0.764829140903732 0.668529904930407 0.668319959017537 Y Y 3.4048855493250496 3.71041843152174 3.4048855493250496 3 0.0 0.0025706940874035107 Y 0.0025706940874035107 N Y 5485 839 ENSG00000105676 ENSG00000181035 + - 19 19 19170563 19223704 utr3p utr5p ARMC6 SLC25A42 19144384 19174803 + + 0.0 19168467 19206900 + - N - - N SA467 1 0.0 1.0 1 0 1 N Y 0.0 0.0 25 1.2155763320838102 1.59944254221554 1.59944254221554 1.2155763320838102 4 - - 0.993553512240915 HCT116-unstranded 0.50 50243 TGTGAAAGTGTATAACTACAATCACCTAATGCCCACAAGGTACTCTGTGGATATCCCCTTGGACAAAACTGTCGTCAATAAGGATGTCTTCAGAGATCCTGCTCTTAAACGCAAGGCCCGACGGGAGGCCAAGGTCAAGTTTGAAGAGAG|GCCCTCCACGCCCTTCAGGAGGAGCAGGCCAGACTCAAGATGAGGCTGTGGGACCTGCAGCAGCTGAGAAAGGAGCTCGGGGACTCCCCCAAAGACAAGGTAAGGTGGGAGATCTGGTGTTGTTTGGTAAAAACGAGCTGGCGAGGCCGGGTGCGGTGGCTCACACCTGTAAACCCAGC 79 1.0 0.667492156434218 0.653570630665473 Y Y 3.2693225627147204 3.28655907981151 3.2693225627147204 1 0.0 0.0 Y 0.0 N Y 32020 952 ENSG00000131469 ENSG00000068079 + - 17 17 41154976 41166473 coding coding RPL27 IFI35 41150290 41158742 + + 0.0 41154800 41164196 + - N - 0.466268674305705 N SA467 3 0.1902173913043481 1.7 1 6 1 N Y 0.0 0.1902173913043481 10 1.04496912758082 1.20846769856285 1.20846769856285 1.04496912758082 4 - 8.1 0.959886081006032 HCT116-unstranded 0.50 50727 CCGCTACCCCCGCAAAGTGACAGCTGCCATGGGCAAGAAGAAGATCGCCAAGAGATCAAAGATAAAATCTTTTGTGAAAGTGTATAACTACAATCACCTAATGCCCACAAGGTACTCTGTGGATATCCCCTTGGACAAAACTGTCGTCAATAAGGATGTCTTCAGAGATCCTGCTCTTAAACGCAAGGCCCGACGGGAGGCCAAGGTCAAGTTTGAAGAGAG|GCCCTCCACGCCCTTCAGGAGGAGCAGGCCAGACTCAAGATGAGGCTGTGGGACCTGCAGCAGCTGAGAAAGGAGCTCGGGGACTCCCCCAAAGACAAGGTCCCATTTTCAGTGCCCAAGATCCCCCTGGTATTCCGAGGACACACCCAGCAGGACCCGGAAGTGCCTAAGTCTTTAGTTTCCAATTTGCGGATCCACTGCCC 79 0.89026470074312 0.713386860847181 0.6260548457113579 Y Y 3.2693225627147204 3.28655907981151 3.2693225627147204 0 0.0 0.0 Y 0.0 N Y 32020 952 ENSG00000131469 ENSG00000068079 + - 17 17 41154976 41166473 coding coding RPL27 IFI35 41150290 41158742 + + 0.0 41154800 41164196 + - N - - N SA467 5 0.0 1.75 1 39 1 N Y 0.0 0.0 84 1.5923339086945802 1.45726987179638 1.5923339086945802 1.45726987179638 4 - - 0.935675254526155 HCT116-unstranded 0.50 247768 TGAAATTGGGAGTTGCTGTGTGGAAACTCAACTCTCTGGAACTTCTTCCTTCCTCCTGCCTCTGCACAAATGTGACGGCAGCAGCTGAAGCCAACATCTTGCGACCATGAGAGAAAAACCTGGAGAACGGACGAGTCCTCAACCCTGACTTCAGACCAACCTACACCCACCTCTGGACGTGGGGCTAA|TAGAGACGTCATCTAAGAGGAGCTTGCAAGTCCAGAGGGCTTCCTGAAGGAAGTGAGCTGAGAATAATATGAAATTAACCAGACCAAGGGCCATTCCAGGAAGAGAGAATGGTACGTGAAACTGCCCAGGAGT 2 0.935108901666386 0.354337768648498 0.601963770519699 Y Y 3.53039946453785 3.61464054707277 3.53039946453785 0 0.0 0.00310559006211186 Y 0.0405828235184235 N N 977 8021 ENSG00000113761 ENSG00000160867 + - 5 5 176508190 176525145 utr3p upstream ZNF346 FGFR4 176449697 176513887 + + 0.0 176506605 176513157 + - N - - N SA467 1 1.0 1.0 1 0 1 N Y 0.165562913907285 1.0 9 1.07340366166465 0.639777016886214 1.07340366166465 0.639777016886214 4 - - 0.9718587362098678 HCT116-unstranded 0.50 36624 ACCCGCACCTGGAGAGTCAGGAGGGCCTCACATCAGAACGCCTGAGCAAATACAGTTTTGAAGGATACTAATTTTTTAAAAAGTTCATTCACATGAGTTAGACAAAGAGAAAGAAGCAGGACATTCTAGGAAGAAGGAACGGCCCAGGCAAAAGCGACGCGTACATTGGCGTG|GCCCAGGGCTGGGACGAGGCCGGTTCCCGCCTGCAACCTGCACTGAAGACGGGAACCTTGGGAGCCGGTACCGGAACGCTCGGAAACGGCACCAAAGTACGAATCCTAGGGCGGAAAAGCGTTACCAAGACACTCGTCCCCAGAGCCGCTTCCTGGGACTCTCTAGCCTCCTACCGCTTCTCAGTGATGTT 7 0.988696467824134 0.9748860413900692 0.9801805348633872 Y Y 3.48912663185998 3.37192651807217 3.37192651807217 6 0.0 0.0 Y 0.0 N N 216 46232 ENSG00000234171 ENSG00000171863 + - 2 2 3609324 3628509 intron upstream AC108488.3 RPS7 3606082 3622795 + + 0.0 3607319 3622641 + - N - - N SA467 1 0.0153061224489796 1.0 1 0 2 N Y 0.0153061224489796 0.0 6 1.39329217010776 1.42172670419159 1.42172670419159 1.39329217010776 4 - - 0.961319677620855 HCT116-unstranded 0.50 36623 CCTGGAGAGTCAGGAGGGCCTCACATCAGAACGCCTGAGCAAATACAGTTTTGAAGGATACTAATTTTTTAAAAAGTTCATTCACATGAGTTAGACAAAGAGAAAGAAGCAGGACATTCTAGGAAGAAGGAACGGCCCAGGCAAAAGCGACGCGTACATTGGCGTG|TGTGGTCCCTGGACCAGTATCATCAGCATTGCCTGTGAGCTAATTAGAAATGCAACATATTGGAGCTGCTGTGGACTGAATGTGTGTGTCCCCCCAAAGTGCACATGTTAAATCCTAACCCCCAAAGTGATG 1 0.616236523368867 0.40904272750622295 0.480565296431779 Y Y 3.48912663185998 3.57848902055439 3.48912663185998 0 0.0 0.0 Y 0.0 N N 216 46232 ENSG00000234171 ENSG00000171863 + - 2 2 3609324 3628509 intron upstream AC108488.3 RPS7 3606082 3622795 + + 0.0 3607319 3617864 + - N - - N SA467 1 0.586538461538462 1.0 1 0 2 N Y 0.0 0.586538461538462 5 0.760623786742499 0.739297886179625 0.760623786742499 0.739297886179625 4 - - 0.9797053234775353 HCT116-unstranded 0.50 190990 CCCCTGGATTGGTCTATTGTGGATTCTATACTGATGGAACGTCGAATTAGACCATGGATTAATAAGAAAATCATAGAATATATAGGTGAAGAAGAAGCTACATTAGTTGATTTTGTTTGTTCTAAGGTTATGGCTCATAGTTCACCCCAGAGCATTTTAGATGATGTTGCCAT|GAATGACAATAGAGAACGGCAGGAGCACAACGACAGACGGAGCCTTGGCCACCCTGAGCCATTATCTAATGGACGACCCCAGGGTAACTCCCGGCAGGTGGTGGAGCAAGATGAGGAAGAAGATGAGGAGCTGACATTGAAATATGGCGCCAAGCATGTGATCATGCTCTTTGTCCCTGTGACTCTCTGCATGGTGGTG 20 0.961123306968194 0.7687263417693871 0.365557340302241 Y Y 3.4378445805779303 3.23693259291531 3.23693259291531 2 0.0 0.0 Y 0.0 N Y 19697 3513 ENSG00000119707 ENSG00000080815 + - 14 14 73588122 73690399 coding coding RBM25 PSEN1 73525144 73603126 + + 0.0 73581041 73637505 + - N - - N SA467 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 19 1.2582281332095502 1.42172670419159 1.42172670419159 1.2582281332095502 4 - - 0.989081643736278 HCT116-unstranded 0.50 190989 TGAGCTCTTCGCTTATCCCCTGGATTGGTCTATTGTGGATTCTATACTGATGGAACGTCGAATTAGACCATGGATTAATAAGAAAATCATAGAATATATAGGTGAAGAAGAAGCTACATTAGTTGATTTTGTTTGTTCTAAGGTTATGGCTCATAGTTCACCCCAGAGCATTTTAGATGATGTTGCCAT|GACCTAATCTGGGAGCCTGCAAGTGACAACAGCCTTTGCGGTCCTTAGACAGCTTGGCCTGGAGGAGAACACATGAAAGAAAGAACCTCAAGAGGCTTTGTTTTCTGTGAAACAGTATTTCTATACAGTTGCTC 9 0.783099805480891 0.7074727127119009 0.759806296144985 Y Y 3.4378445805779303 3.66745018166468 3.4378445805779303 0 0.0 0.0 Y 0.0030864197530865397 N Y 19697 3513 ENSG00000119707 ENSG00000080815 + - 14 14 73588122 73690399 coding utr5p RBM25 PSEN1 73525144 73603126 + + 0.0 73581041 73614503 + - N - - N SA467 1 0.032 1.0 1 0 2 N Y 0.0 0.032 7 1.08051229518561 0.888579190119742 1.08051229518561 0.888579190119742 4 - - 0.98407239378753 HCT116-unstranded 0.50 176112 TCTGACAGCATCATTTACAGGTTCACACTGTTCCACCTGAGTCTTCATATTATGCTCAAAATATGGACCTATCAGAAAATAGTTCTCTCCCCATTCATCTGCTGTTGTTTTGGCCTTTGTCTGAATCACAGTATAGATGCCTCCAA|CTTAGCCTGAAATATAAGTTGATGTTTTTTCTCCAAGTTGTTGTCATCCGTTGACTTTGCTTGTGTTATGTTTTCAGGTAAGAAGTTCTCTTTTTCAGTGGTTAAATTGAACCAATCCTTTCTTTAATGGCTCTAGATAT 12 0.40155319021550295 0.5883380935415841 0.7664287927013309 Y Y 3.69937614314766 3.39065076568547 3.39065076568547 0 0.0 0.0177202588352413 Y 0.0177202588352413 N N 475 87891 ENSG00000111713 ENSG00000111716 - + 12 12 21757781 21910791 coding downstream GYS2 LDHB 21689123 21788276 - - 0.0 21733457 21783595 + - N 12.0910983944074 - N SA467 1 0.0 1.0 1 0 1 N Y 0.0 0.0 13 1.04496912758082 0.9525568918083628 1.04496912758082 0.9525568918083628 4 0.153846153846154 - 0.964169098777393 HCT116-unstranded 0.50 147116 GTATGAGATCCCAGAATCTCTCCTGGCCCAGAGGACCCTGCAGTTCTCAGTTTGGCATCATGGTCGTTTTGGCAGAAACACTTTCCTTGGAGAGGCAGAGATCCAGATGGATTCCTGGAAGCTTGATAAGAAACTGGATCATTGCCTCCCTTTACATGGAAA|GATCACTGGCGTTATCCTTCTTGCAGTTGGCATTTGGGGCAAGGTGAGCCTGGAGAATTACTTTTCTCTTTTAAATGAGAAGGCCACCAATGTCCCCTTCGTGCTCATTGCTACTGGTACCGTCATTATTCTTTTGGGCACCTTTGGTTGTTTTGCTACCTG 5 0.9917459569842072 0.725567744800542 0.100757823485915 N Y 3.45447218342791 3.56232542602083 3.45447218342791 1 0.0 0.0 Y 0.0 N Y 277 1715 ENSG00000102362 ENSG00000000003 + - X X 99987110 99894988 coding coding SYTL4 TSPAN6 99929488 99883667 - - 0.0 99940987 99890743 - + N - - N SA467 1 0.0 1.0 1 0 1 Y N 0.0 0.0 7 1.15159863039519 1.0947295622275202 1.15159863039519 1.0947295622275202 4 - - 0.957557174913564 HCT116-unstranded 0.50 229670 GTATGTCCCTTATGGCTATTTGCCGCCCTCTGCCAGTCACTTTCCACCGAGCCTTTGACATGGTTCATGATCCAATGGCAGCTCTGGAGACCCTCTTAACCTTGGGATTTGAACGCGTGTTGACCAGTGGATGTGACAGTTCAGCATTAGAAGGGCTACCCCTAATAAAGCGACTCATTGAGCAG|ACGCAGTCCAGGAATCATGCTGGAGAAGTTCTGCAACTCTACTTTTTGGAATTCCTCATTCCTGGACAGTCCGGAGGCAGACCTGCCACTTTGTTTTGAGCAAACTGTTCTGGTGTGGATTCCCTTGGGCTACCTATGGCTCCTGGC 5 0.732715252269627 0.677166075653685 0.7181603626823699 Y Y 3.56129235625094 3.77208042376856 3.56129235625094 0 0.0 0.0 Y 0.00978529549958107 N N 1526 2559 ENSG00000119929 ENSG00000023839 + - 10 10 101515891 101611949 coding utr5p CUTC ABCC2 101462315 101542489 + + 0.0 101507147 101542586 + - N - - N SA467 1 0.0 1.0 1 0 2 N Y 0.0 0.0 7 1.30798856785626 0.995208692934111 1.30798856785626 0.995208692934111 4 - - 0.980871309860197 HCT116-unstranded 0.50 209709 TGGATTGGAACTGAGACCGAAATATAATGGAATTTTACATTGCTTGACTACCATTTGGAAACTTGATGGACTACGGGGACTTTATCAAGGAGTAACCCCAAATATATGGGGTGCAGGTTTATCCTGGGGACTCTACTTTTTCTTG|ATCTTCTAAGGGTGTGAGGATACAGGCGTCAAAGACCCCGTGCTGAGACAGCTCCATAACAACATGCAGATATTTGGCAATGAGGGTTCAGAAGAGGACTTGCTGTGGAGAAGAGAGAAAAGAGATGGGAAGACTCTGTGAATGAATAGAGAACACTCTGCA 9 0.759784429257126 0.841109598157491 0.339272975476224 N Y 3.27511556385332 3.72448538129198 3.27511556385332 1 0.993125839677564 0.0 Y 0.0032467532467533896 N Y 1401 447 ENSG00000164933 ENSG00000247081 + - 8 8 104427417 104311000 coding intron SLC25A32 RP11-318M2.2 104410863 104169218 - - 0.0 104419862 104258912 - + N - 4.15338453693703 N SA467 1 0.0 1.0 1 0 2 N N 0.0 0.0 10 1.05207776110177 0.9454482582874052 1.05207776110177 0.9454482582874052 4 - 3.8 0.9784089952364592 HCT116-unstranded 0.50 209707 GTGCCCTTCAGTTTATGGCATATGAATTGCTGAAGTTGAAGTACAACCAGCATATCAATAGATTACCAGAAGCCCAGTTG|GATCTTCTAAGGGTGTGAGGATACAGGCGTCAAAGACCCCGTGCTGAGACAGCTCCATAACAACATGCAGATATTTGGCAATGAGGGTTCAGAAGAGGACTTGCTGTGGAGAAGAGAGAAAAGAGATGGGAAGACTCTGTGAATGAATAGAGAACACTCTGCAAGCATCCCAGTTCCTTTGGTTGCCCTGCAGTCTGCAGGTACCAGGAGAAATCAAAAGC 1 0.506354107421995 0.247757892731857 0.23238944878937 N Y 3.4733642649105496 3.6925594198089904 3.4733642649105496 0 0.9875413907284772 0.0 Y 0.0 N Y 1401 447 ENSG00000164933 ENSG00000247081 + - 8 8 104427417 104311000 coding intron SLC25A32 RP11-318M2.2 104410863 104169218 - - 0.0 104414169 104258912 - + N - 4.16718186511055 N SA467 1 0.0 1.0 1 0 2 N N 0.0 0.0 5 0.8956878236407 0.938339624766447 0.938339624766447 0.8956878236407 4 - 7.2 0.943844485898028 HCT116-unstranded 0.50 81245 CACCTTGAAAGGGCGGATGCTGTCGTCCTCCCTGGCTGCGGACCTCGTGCCTGGCCCCCACCACCCATCTTCAAGTGGCAAAGTTTCCTCTTTGTCCCGGGAGATGAACCAGTAGATGGCAAAGCCCAGCACTGAAGTGAGGAGGATTTCTAGCCACATGGCT|CCTTCATAGGGTCAGCGAGGTAAAGCTTCTCGGCAGCGCGGCTGAACTCCTCCCAGGTCTGGTACTGCGGCATCGTGGCCTAGAGTGGAAAAGTAAAGAGAAGCAAGGCCTCAGAACCCGGCCCAACAAACTACCTACGTCCGGGAGTCGCCAACCGACGCGAGTCCCAGC 25 0.994872305438272 0.597112722465865 0.6688142132634339 N Y 3.5816815158199 3.48912663185998 3.48912663185998 1 0.993883344016116 0.0 Y 0.95718340811281 N Y 4351 14589 ENSG00000143819 ENSG00000143742 - + 1 1 226033260 225978168 utr5p intron EPHX1 SRP9 225997794 225965531 + + 0.0 226016426 225965714 - + N - 0.577905673388717 N SA467 2 0.0 1.92307692307692 1 24 3 Y N 0.0 0.0 26 1.14448999687423 1.20846769856285 1.20846769856285 1.14448999687423 4 - 78 0.95546991385966 HCT116-unstranded CGHSA0324 0.50 207371 AGCTTTCTTTGGGTCTGGGGGGCCAGGGTCTTTCCCTGCAGCCAGGGGTCTTTCACCTGTGGGACCTTTAGGTGCCTTGTCTGTTGATGGGTTCTGAATTCCCAGCTCAACTGCTCCATTTTCTGTCGCCATGAGGTAGGGAGGCGTGTGCTGCTGCTTGTCTAACTCAAGTCTTTCTAG|CAGTTCTCTCCGTAGCCTGGCCAGCTCCTCTTTTTTCTGCTCTTCCTCCTGTAGTCTGGCCTCCTCCAACTGCTGGGCTTTCTGGGCTTCTACCTCAGCCATTCTCTTCTCCAGCTCCTGCCGCTCTTTGGCTCT 9 1.0 0.610819434397831 0.6016542158397641 N Y 3.4571608175836404 3.2216342342823 3.2216342342823 0 0.0 0.0 Y 0.0 N Y 610 36278 ENSG00000101306 ENSG00000088325 - + 20 20 30422492 30389608 utr5p coding MYLK2 TPX2 30407111 30327074 + + 0.0 30407336 30386355 - + N - 1.31700223674172 N SA467 1 0.0 1.0 1 0 1 Y N 0.0 0.0 6 1.17292453095806 0.8388187554730359 1.17292453095806 0.8388187554730359 4 - 420.333333333333 0.978966500754111 HCT116-unstranded 0.50 50826 AACTTTTGTTAGCAAGGAGGTTTCAGAAATGATTTTGGATTTTCTGCTGCGGAATTTCTCGGCACCTACCTGTAGTATGGGGCACTTGGTTTGGTTGCAGAGTAAGAAGGTGGAAGAATGAGCTGTACTTGGTTAAGCAGTTGAAACCTTTTTTGAGCAGGATCTGTAAAAGCATAATTGAATTTGTTTCACCCCCGTGGATTCCAGTGGGCCCGACAGCGCAACAG|ACTATAGACCAGTTTGAATATGATGGTTGTGACAATTGTGATGCATATCTACAAATGAAGGGTAACCGAGAGATGGTATATGACTGCACTAGCTCTTCCTTTGATGGAATCATTGCGATGATGAGTCCAGAGGACAGCTGGGTCTCCAAGTGGCAGCGAGTCAGTAACTTTAAGCCAGGTGTATATG 22 1.0 0.868435821384827 0.325381382505044 Y Y 3.4451253122330296 3.418448637985509 3.418448637985509 2 0.994665292184782 0.0 Y 0.0 N Y 9742 8821 ENSG00000108375 ENSG00000213246 + - 17 17 56494956 56430454 utr5p coding RNF43 SUPT4H1 56429861 56422539 - - 0.0 56494378 56428869 - + N - - N SA467 3 0.0 1.52173913043478 1 7 1 N Y 0.0 0.0 23 1.60655117573649 1.35774900250297 1.60655117573649 1.35774900250297 4 - - 0.90471984476254 HCT116-unstranded 0.50 162569 TGTCCAAACATCAAGCAGTACAGCTTCCTCGAGAGGGACAAGAAGACCAAGGTCTGACTAAGGATTTCAGCAATAGTCCTTTGCATCGCTTTAAAAAGCCGGGCTCTAAAAACTTCCAGAATATCTTTCCACCATCAGCCACTCTGCATCTTTCCAACATTCC|GTTTAGACGTCTGTGCCACTTGCCATGAACATGCCACATGCCAGCAAAGAGAAGGGAAGAAGATCTGTATTTGCAACTATGGATTTGTAGGGAACGGGAGGACTCAGTGTGTTGATAAAAATGAGTGCCAGTTTGGAGCCACTCTTGTCTGTGGGAACCACACATCTTGCCAC 12 1.0 0.8273400430501421 0.415733323729344 Y Y 3.0867335950812698 3.60785432895764 3.0867335950812698 1 0.0 0.0 Y 0.00296735905044498 N Y 7946 650 ENSG00000119314 ENSG00000106868 + - 9 9 115095947 114937688 coding coding PTBP3 SUSD1 114980715 114803065 - - 0.0 114989691 114919893 - + N - - N SA467 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 10 1.13738136335327 1.22268496560476 1.22268496560476 1.13738136335327 4 - - 0.962091910998521 HCT116-unstranded 0.50 142197 ACCTTCATCTGCCCCCGGAGATTGTGCCTGCCACCCTACGCCGTAGCCGTCCAGAGACTGGCAGGCCTCGGCCTAAAGGTCTGGAGGGTGAGCGACCTGCGAGACTCACAAGAGGGGAAGCTGACAGAGATACCTACAGACGGAGTGCTGTGCCACCTGGTGCCGACAAGAAAGCCGAGGCTGGGGCTGGGTCAGCAACCGAATTCCAGTTT|GTGCTACTCGTGAGCAGTAGTCGCCATCCAGACAGATGGATTGTCCCTGGAGGAGGCATGGAGCCCGAGGAGGAGCCAAGTGTGGCAGCAGTTCGTGAAGTCTGTGAGGAGGTATGCATGGAGAAGAGAGGGCACAGCTGTGCCTCGTCATCATGAACCTGTCCTATCTGTGTAGTTCTTTAATATGTCAGCACTCACTGAATAAATAT 9 0.7819250321197121 0.603633392011148 0.684974614049827 Y Y 3.60935140704395 3.6988816296077 3.60935140704395 1 0.995226649130366 0.0 Y 0.479704755209869 N Y 46255 2526 ENSG00000124614 ENSG00000112664 + - 6 6 34393902 34360451 coding coding RPS10 NUDT3 34385231 34255997 - - 0.0 34386146 34309749 - + N - 5.08146299074824 N SA467 17 0.0 9.75 6 8 3 Y Y 0.0 0.0 8 1.22979359912572 1.45726987179638 1.45726987179638 1.22979359912572 4 - 33 0.943600173478019 HCT116-unstranded CGHSA0652 0.50 142432 AAGGTCTGGAGGGTGAGCGACCTGCGAGACTCACAAGAGGGGAAGCTGACAGAGATACCTACAGACGGAGTGCTGTGCCACCTGGTGCCGACAAGAAAGCCGAGGCTGGGGCTGGGTCAGCAACCGAATTCCAGTTT|GCTGGAGTAAAAGGGACATTGGGAAGATTAGTTGGAATTTTTGAGAACCAGGAGAGGAAGCACAGGACGTATGTCTATGTGCTCATTGTCACTGAAGTGCTGGAAGACTGGGAAGATTCAGTTAACATTGGAAGGAAGAGGGAATGGTTTAAAATAGAAGACGCCATAAAAGTGCTGCAGTATCACAAACCCGTGCAGGC 26 1.0 0.8295173481330099 0.5325090410905859 Y Y 3.60935140704395 3.27870928670295 3.27870928670295 1 0.985444650801192 0.0 Y 0.985444650801192 N Y 46255 2526 ENSG00000124614 ENSG00000112664 + - 6 6 34393902 34360451 coding coding RPS10 NUDT3 34385231 34255997 - - 0.0 34386146 34263462 - + N - - N SA467 8 0.0 6.0 1 6 1 Y Y 0.0 0.0 7 0.902796457161658 1.29377130081434 1.29377130081434 0.902796457161658 4 - - 0.935698632206094 HCT116-unstranded CGHSA0652 0.50 229816 AGCTTAATGCTTTAATGACTGATGAAACAATATCCAATGTGCCAATCCTTATCTTGGGTAACAAAATTGACAGAACAGATGCAATCAGTGAAGAAAAACTCCGTGAGATATTTGGGCTTTATGGACAGACCACAGGAAAG|GCATAATCACCAGCAACACCCGGGACAATAATACGGGGGCCACCTACCCCCACCTGAACTTCAGCATTCCCATCACGGTGCTCCAGCCGGCCCTGCAGCAGTACAGCCAGACCCAAGACCTAGGTGGCCTCCGTGAGCTGGACCGCGCTGCTGAGCCAG 2 0.268931078006832 0.950765456335851 0.423155607509208 Y Y 3.4770512737160097 3.16935896602371 3.16935896602371 1 0.964404761904762 0.0 Y 0.0 N Y 7661 888 ENSG00000079332 ENSG00000156521 + - 10 10 71930279 71906432 coding coding SAR1A TYSND1 71909960 71897737 - - 0.0 71913594 71899897 - + N - - N SA467 2 0.0 1.6 1 3 2 Y Y 0.0 0.0 5 1.2511194996886 0.6966460850538779 1.2511194996886 0.6966460850538779 4 - - 0.91147713585697 HCT116-unstranded 0.50 229815 AAGAGTTTTACTTCTCTGGACTGATCCTATTCACAGCTTCCTCATGAACTTTTCTAATAGAACAAGGAAAGCTCTCCAACCATGTCTGGCGTTGAGAAGCCAAGAGTCTCTGTCAACTCTCTCATTGCCCAGTGGTGACATGTGCTCTTCTCCACACTGTTGGGAGGTAATGCTGCCCCACGTGCTGGTGCAG|GCATAATCACCAGCAACACCCGGGACAATAATACGGGGGCCACCTACCCCCACCTGAACTTCAGCATTCCCATCACGGTGCTCCAGCCGGCCCTGCAGCAGTACAGCCAGACCCAAGACCTAGGTGGCCTCCGTGAGCTGGACCGCGCTGCTGAGCCAGTCAGG 18 1.0 0.750873984382657 0.5150327870924001 Y Y 3.50997045217554 3.16935896602371 3.16935896602371 3 0.993919471317618 0.0 Y 0.008873824771767241 N N 7661 888 ENSG00000079332 ENSG00000156521 + - 10 10 71930279 71906432 utr3p coding SAR1A TYSND1 71909960 71897737 - - 0.0 71912019 71899897 - + N - - N SA467 3 0.0 1.3529411764705903 1 5 2 N Y 0.0 0.0 17 1.37907490306584 1.13027272983231 1.37907490306584 1.13027272983231 4 - - 0.968791460032859 HCT116-unstranded 0.50 213623 ATAGACCCATATAAGCTGCTGCCACTGCAGAGGTTTTTACCTCGACCTCCAGGTGAGAAAGGACCTCCAAGAGGTGGTGGCAGGGGAGGCCGAGGAGGAGGAAGAGGAGGAGGTGGCAGAGGTGGTGGCAGAGGCGGTGGTTTTAGAGGTGGAAGAGGAGGTGGAGGTGGGGGCTTCAGAGGAGGAAGAGGTGGTGGTTTCAGAGG|TATGATAAGTATTATCAGCAACATAATAGTTCTGGGCATCTTCATTAAGTACAAGGAACTTCGGACACCCACAAATGCAATTATTATTAACCTGGCTGTTACTGATATAGGGGTCAGTAGCATTGGCTATCCCATGTCTGCTGCCTCAGATCTGTAT 16 1.0 0.914797189669912 0.734328815339192 Y Y 2.98098634482147 3.4722913423473 2.98098634482147 1 0.0 0.0 Y 0.0 N Y 2273 343 ENSG00000109534 ENSG00000180245 + - 4 4 110745893 110765760 coding coding GAR1 RRH 110736666 110749150 + + 0.0 110745189 110754295 + - N - 0.0259714317564461 N SA467 2 0.34343434343434304 1.16666666666667 1 2 2 Y Y 0.34343434343434304 0.0 12 1.40750943714967 1.14448999687423 1.40750943714967 1.14448999687423 4 - 0.166666666666667 0.935347849264522 HCT116-unstranded 0.50 214001 GACCATCTGCCTTCCTGACGTAGGGAGAAGAATGACCACCAACACTTACATCGGCTTGATTCTGGGAGCCTGGATCAATGGCCTGTTTTGGGCTTTGATGCCTATCATAGGGTGGGCTAGTTATGCCCCAGATCCTACTGGTGCTACGTGTACCATAAACTGGAGGAAAAATGATAG|GTTGGTGCTATGTAATGACATGGATATGAACGAGCTGCCTACGAACCTCCCCGTGGACACTGTGAAGCTTCGCATAGAGAAGACTGTCATCCGCAGAATCTCTGCGGAGGCCTTCTATTACCTGGTGGAGCTCCAGTATCTCTGGGTGACTTACAATTCCGTGGCCAGCATTGACC 16 0.90416847483118 0.924785856193512 0.711035439757623 Y Y 3.47129812537077 3.6371797845675298 3.47129812537077 0 0.0 0.0 Y 0.0 N N 343 1331 ENSG00000180245 ENSG00000183423 + - 4 4 110765760 110793471 coding utr5p RRH LRIT3 110749150 110772486 + + 0.0 110757316 110772660 + - N - - N SA467 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 12 1.2582281332095502 1.27244540025147 1.27244540025147 1.2582281332095502 4 - - 0.961278208077432 HCT116-unstranded 0.50 240850 GGTCACCTTCTTGTCATAGGTGCCAGTCACCAGGATGTCAGGCAGGTAGGAGAGGCACAGCACGGCTGAGCTGGCCCTCATGGGTACTATTTCGCTTAGTGCCTAAGGTCTTGATCAGAACCTGGTTGGACTCCGTCCCCAGCTGCCGCAGGTCCCACAAGTTGACGTTGCGATCTCGGGAGCCCGACAGACAGAGTGACCCAC|CCTGGCAGTCTCCATGATCACCTAGACCCCATAGAAAGCCGCCAGCCTCTCCTTGAGCAGCGGCGGGAATTGCTCAGAGAACTGCTGCCAGTTATCTTCCCCAACTTGGTCTTTGAAGCCGTGGAGAATCTGTGGGGAGGGTGGTGGTGAGGGGTAGGCAGGGGCAGAACAAGGGGAG 4 0.8361144634894221 0.256199346642485 0.340949227147123 Y Y 3.39487633072086 3.51360402781852 3.39487633072086 0 0.0 0.0 Y 0.0 N Y 820 12182 ENSG00000132004 ENSG00000105576 - + 19 19 12807457 12834825 coding intron FBXW9 TNPO2 12798867 12810008 - - 0.0 12805536 12812140 + - N - 0.613858541749351 N SA467 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 8 1.15159863039519 1.00231732645507 1.15159863039519 1.00231732645507 4 - 35.125 0.9199101940923752 HCT116-unstranded 0.50 202018 GGCATGATTGGGATCAGTACCTGGTGCCATCCGATCATCCCAAAGGCAACTTCGTTCCCCAAGGATGGGTCCTTCCCCCGCTCCCCAGCAACGACATCTGGGCAACTGCTGTTAAGCTGCATTAGTAAAGATGCTCCAGGAGTGTGGTCCAGCCAGCGCTCTTTCCAGCT|CTGTTTGGGGCTCAGCTAAGTGACCACACAGGAGAGCAGTGAGGCCATTTGAGGCCTGAGCCTGGTCCTCAGGACTCGACTCTCTCTCCCTGCCATCAAGCAGCCTGCCCCAGCCCTGCCAGCCATCTCCACACTCCTGACAGAATGAATGCCCTCGATGGTGTTCCTTTCAAGTTGCCCAAG 3 0.386387884772114 0.896837926919978 0.9221776933417892 Y Y 3.43887765034782 3.46554497702552 3.43887765034782 10 0.0 0.0 Y 0.0 N N 1718 144 ENSG00000090470 ENSG00000246922 + - 15 15 65426174 65407535 utr3p utr5p PDCD7 UBAP1L 65409717 65385338 - - 0.0 65411010 65398697 - + N - - N SA467 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 5 0.6113424828023821 0.7108633520957941 0.7108633520957941 0.6113424828023821 4 - - 0.9449278188000848 HCT116-unstranded 0.50 202017 GGGAGCAGGAACTCAAAGCAGCCGCTGATGGCGTACTATCTGAAGTGAGGAAAAAACAAGCAGATACCAAAAGAATGGTGGACATTCTACGGGCTTTGGAGAAATTGAGGAAACTGAGGAAAGAGGCTGCAGCGAGGA|AAGCACTGGCCCCCTCACCTTTTCCTTTCCAGCTGTTTGGGGCTCAGCTAAGTGACCACACAGGAGAGCAGTGAGGCCATTTGAGGCCTGAGCCTGGTCCTCAGGACTCGACTCTCTCTCCCTGCCATCAAGCAGCCTGCCCCAGCCCTGCCAGCCATCTCCACACTCCTGACAGAATGAATGCCCTCGATGGTGTTCCTTTC 2 0.64747020152093 0.440210301880261 0.551406904596987 Y Y 3.0212566129529907 3.1657652431740804 3.0212566129529907 0 0.0 0.0 Y 0.0 N Y 1718 144 ENSG00000090470 ENSG00000246922 + - 15 15 65426174 65407535 coding utr5p PDCD7 UBAP1L 65409717 65385338 - - 0.0 65421370 65398726 - + N - - N SA467 1 0.0 1.0 1 0 2 N Y 0.0 0.0 6 0.511821613508971 0.639777016886214 0.639777016886214 0.511821613508971 4 - - 0.967527943543805 HCT116-unstranded 0.50 176045 AGGAAGAAGAAGAAGAAGAATATGATGAAGGGTCTAATCTCAAAAAACAGACCAATAAGAACCGGGTGCAGTCAGGCCCCCGCACACCCAACCCCTATGCCTCGGACAACAGCAGCCTCATGTTTCCCATCCTGGTGGCCTTCGGAGTCTTCATTCCAACCCTCTTCTGCCTCTGCCG|ATTATTTATGTAAACCCGAAGACAACATCTACAGTATTGATTTCACCCGCTTCAAAATTCGAGATTTGGAGACAGGGACAGTACTTTTTGAGATTGCCAAACCTTGCGTTTCAGACCAGGAGGAGGATGAGGAGGAG 12 0.952641729149052 0.9420410509854742 0.202267206812168 Y Y 3.43417115214159 3.43681151080804 3.43417115214159 0 0.0 0.0 Y 0.0 N N 28146 7564 ENSG00000110917 ENSG00000175970 + - 12 12 121139667 121161443 coding coding MLEC UNC119B 121124672 121148238 + + 0.0 121134341 121151077 + - N - - N SA467 1 0.08396946564885499 1.0 1 0 1 Y Y 0.08396946564885499 0.0 10 0.93123099124549 0.639777016886214 0.93123099124549 0.639777016886214 4 - - 0.957557174913564 HCT116-unstranded 0.50 132668 AACAGTGACAGCGAAGGGGAGGACAGGCGGCCCGCAGGACCCCCGCGGGAGCCGGTCAGGCGGCGGCGGCGGCTGGTGCTGGATCCGGGGGAGGCGCCGCTGGTTCCGGTGTACTCGGGGAAGGTTAAAAGCAGCCTTCGCCTTATCCCAGATGATCTATCCCTCCTGAAACTCTACCCTCCAGGGGATGAGGAA|GGTGGGATCGTCGGTGGGACCGGAGCGCGGGCGGGCGCGGCCCCCCGGGACCATGGCCGGGTCCGACACCGCGCCCTTCCTCAGCCAGGCGGATGACCCGGACGACGGGCCAGTGCCTGGCACCCCGGGGTTGCCAGGGTCCACGGGGAACCCGAAGTCCGAGGAGCCCGAGGTCCC 4 0.0801147864422804 0.616824727126448 0.643893436382413 Y Y 3.20807114562183 2.86845287644654 2.86845287644654 0 0.994365429181624 0.0 Y 0.0 N Y 1534 3085 ENSG00000176953 ENSG00000169682 + - 16 16 28978418 28995869 coding utr5p NFATC2IP SPNS1 28962128 28985542 + + 0.0 28963525 28986422 + - N - - N SA467 1 0.163398692810458 1.0 1 0 3 N Y 0.0 0.163398692810458 6 0.888579190119742 1.08762092870656 1.08762092870656 0.888579190119742 4 - - 0.951775607787191 HCT116-unstranded 0.50 132670 GCCCGCAGGACCCCCGCGGGAGCCGGTCAGGCGGCGGCGGCGGCTGGTGCTGGATCCGGGGGAGGCGCCGCTGGTTCCGGTGTACTCGGGGAAGGTTAAAAGCAGCCTTCGCCTTATCCCAGATGATCTATCCCTCCTGAAACTCTACCCTCCAGGGGATGAGGAAGT|GTTCATCTCCAGTTACATGGTGTTGGCACCTGTGTTTGGCTACCTGGGTGACAGGTACAATCGGAAGTATCTCATGTGCGGGGGCATTGCCTTCTGGTCCCTGGTGACACTGGGGTCATCCTTCATCCCCGGAGAGCATTTCTGGCTGCTCCTCCTGACCC 8 1.0 0.44156290596498105 0.5293933557163679 Y Y 3.329991337985 3.4439989565073 3.329991337985 0 0.993807641633729 0.0 Y 0.0 N Y 1534 3085 ENSG00000176953 ENSG00000169682 + - 16 16 28978418 28995869 coding coding NFATC2IP SPNS1 28962128 28985542 + + 0.0 28963525 28989229 + - N - - N SA467 1 0.0 1.0 1 0 3 Y Y 0.0 0.0 7 0.8388187554730359 1.14448999687423 1.14448999687423 0.8388187554730359 4 - - 0.987693582896912 HCT116-unstranded 0.50 132669 GGGATAACAGCAACAGTGACAGCGAAGGGGAGGACAGGCGGCCCGCAGGACCCCCGCGGGAGCCGGTCAGGCGGCGGCGGCGGCTGGTGCTGGATCCGGGGGAGGCGCCGCTGGTTCCGGTGTACTCGGGGAAGGTTAAAAGCAGCCTTCGCCTTATCCCAGATGATCTATCCCTCCTGAAACTCTACCCTCCAGGGGATGAGGAAG|ATTTTCATCTTCATTGGAGAGACCCTCCTGTCCATGAACTGGGCCATCGTGGCCGACATTCTGCTGTACGTGGTGATCCCTACCCGACGCTCCACCGCCGAGGCCTTCCAGATCGTGCTGTCCCACCTGCTGGGTGATGCTGGGAGCCCCT 3 0.953410377915284 0.4867820775487121 0.3920374699236579 Y Y 3.229987888500641 3.4278353619737403 3.229987888500641 0 0.9933959305650352 0.0 Y 0.0 N Y 1534 3085 ENSG00000176953 ENSG00000169682 + - 16 16 28978418 28995869 coding coding NFATC2IP SPNS1 28962128 28985542 + + 0.0 28963525 28994178 + - N - - N SA467 1 0.0 1.0 1 0 3 N Y 0.0 0.0 9 1.27955403377243 1.03786049405986 1.27955403377243 1.03786049405986 4 - - 0.9852282511285472 HCT116-unstranded 0.50 22983 GAGGTCTTCCTGCCCTCGACCCCTGGCCTGGGCATGCACGTGGAAGTGAAGGACCCCGACGGCAAGGTGGTGCTGTCCCGGCAGTACGGCTCGGAGGGCCGCTTCACGTTCACCTCCCACACGCCCGGTGACCATCAAATCTGTCTGCACTCCAATTCTACCAGGATGGCTCTCTTCGCTGGTGGCAAACTG|GCTTCTCCTGCAGGTCGCGAGAATCAGGTGCGTCAGCGGCGTCCGGGAACGCCGGAAGAGCCAGTGGAGCGGCTCTGTAGTCCAAAGTACCCCGTCGACCCCAGCACGGCCGCTCCACCGCCTCCTACTAGACCCAGTCCTAGGGACTGCGCAGTCGCAGAGCTCCGTCCGAGTACCGGAAGCC 1 0.743185632350379 0.906116340797835 0.9212112326687192 Y Y 3.68783934123363 3.58953130892846 3.58953130892846 0 0.994579633260293 0.0 Y 0.0 N N 4630 18666 ENSG00000158604 ENSG00000136271 + - 7 7 44621886 44614650 coding utr5p TMED4 DDX56 44617493 44605016 - - 0.0 44621048 44613801 - + N - 870.53198757764 N SA467 1 0.0 1.0 1 0 1 N Y 0.0 0.0 7 1.19425043152093 1.02364322701794 1.19425043152093 1.02364322701794 4 - 0 0.938859786327038 HCT116-unstranded CGHSA0688 0.50 142085 TCGCCGCCGCGGAGCGGAGTCGAGCCGAGCTGATTTGATCGAGGAGCGCGGTTACCGGACGGGCTGGGTCTATGGTCGCTCCGCGGGCCGCTCCGCCGGCTGGTGCTTTTTTATCAGGGCAAGCTGTGTTCCATGGCAGGGAACTTTTGGCAGAGCTCCCACTA|GGACCACCAAGCTCACCGCAGAGCGCAGCCTCCGCGGACCCGAGGACCGCCCTGCGCGCAGTCTCGAGCAGCAACCAGGGTAGCACCATTGCGGGCCGGCGGCCGCCGCGCTAGTGACCACTTCCTCCTACTCCTTCTCCTCCTGCTCCGGCCTCCT 3 0.920933381602148 0.4867820775487121 0.0151108318845545 Y Y 3.6025651889288097 3.30119509103522 3.30119509103522 1 0.9936503540768292 0.0 Y 0.0 N Y 2963 1301 ENSG00000112237 ENSG00000123552 + - 6 6 100016849 99969604 coding utr5p CCNC USP45 99990256 99880190 - - 0.0 100016372 99969039 - + N - - N SA467 1 0.15909090909090898 1.0 1 0 3 N Y 0.0 0.15909090909090898 8 0.9881000594131528 0.938339624766447 0.9881000594131528 0.938339624766447 4 - - 0.987693582896912 HCT116-unstranded 0.50 142086 TTGCTGAGCTTTCTGTGGATATGGAAAAGATTTTGGAAATAATCAGGGTTATTTTAAAACTATATGAGCAGTGGAAGAATTTCGATGAGAGAAAAGAGATGGCAACCATTCTTAGTAAGATGCCAAAACCAAAACCACCTCCAAACA|GGGACCACCAAGCTCACCGCAGAGCGCAGCCTCCGCGGACCCGAGGACCGCCCTGCGCGCAGTCTCGAGCAGCAACCAGGGTAGCACCATTGCGGGCCGGCGGCCGCCGCGCTAGTGACCACTTCCTCCTACTCCTTCTCCTCCTGCTCCGGCCTCCTGGCGCCCTGCTCCAGGCTCTCCGGCGCC 2 1.0 0.5784005969318621 0.325540648134099 Y Y 3.37295958784206 3.2656754067026 3.2656754067026 0 0.9932176463399732 0.0 Y 0.0 N Y 2963 1301 ENSG00000112237 ENSG00000123552 + - 6 6 100016849 99969604 coding utr5p CCNC USP45 99990256 99880190 - - 0.0 99992988 99969039 - + N - - N SA467 1 0.21649484536082506 1.0 1 0 3 N Y 0.0 0.21649484536082506 5 0.6468856504071719 0.68953745153292 0.68953745153292 0.6468856504071719 4 - - 0.986422832890015 HCT116-unstranded 0.50 81138 AAGGGAAATCGGGAAGAGAACACGGGAACTGAGTATGGAAAACCAGTGTTCTCTGGACATGAAAAGCAAACTGAATACAAGTAAACAAGCAGAAAATGGACAACCAGAACCACAAAACAAGGTTCCGGCTGAGGACCTTACATTGACATTCAG|GAAGGTTTATCTTTTGTCCTTGCTGCTCATTGGCTTCTGGGACTGCGTGACCTGTCACGGGAGCCCTGTGGACATCTGCACAGCCAAGCCGCGGGACATTCCCATGAATCCCATGTGCATTTACCGCTCCCCGGAGAAGAAGGCAACTGAGGATGAGGGCTCAGAACAGAAGAT 13 0.806176783901726 0.36342439593772 0.404943753214698 N Y 3.79040344379773 3.369767092576549 3.369767092576549 0 0.0 0.0 Y 0.0 N Y 3401 159 ENSG00000135870 ENSG00000117601 + - 1 1 173991435 173886516 coding coding RC3H1 SERPINC1 173900352 173872947 - - 0.0 173910403 173884057 - + N - - N SA467 1 0.0 1.0 1 0 1 Y N 0.0 0.0 13 0.909905090682616 1.15870726391614 1.15870726391614 0.909905090682616 4 - - 0.975018102858356 HCT116-unstranded 0.50 50871 GTCTGCCTCAGTCAGATCCTGTATTAAAAGTAACTCTAGCAGTGTCTGATCTTCAAAAGTCCTTGAACTACTGGTGTAATCTACTGGGAATGAAAATTTATGAAAAAGATGAAGAAAAGCAAAGGGCTTTGCTGGGCTATGCTGATAACC|AGGACCCTTGAACATCTGTGAAGAAATGACTATTCTGCATGGAGGCTTCTTGCTGGCCGAGCAGCTGTTCCACCCTAAGGCACTGGCAGAATTAACAAAGTCTGACTGGGAACGTGTTGGACGGCCCATCGTGGAGGCCTTAAGGGAGATCT 10 0.900721831020127 0.947413751108282 0.710857112911271 Y Y 3.2044774227722 3.5597647729410897 3.2044774227722 0 0.0 0.00330033003300323 Y 0.00330033003300323 N Y 3691 10851 ENSG00000167699 ENSG00000179409 + - 17 17 685581 657239 coding coding GLOD4 GEMIN4 660337 647654 - - 0.0 674565 651272 - + N - - N SA467 1 0.177304964539007 1.0 1 0 2 N Y 0.177304964539007 0.0 7 1.00231732645507 1.10183819574848 1.10183819574848 1.00231732645507 4 - - 0.9787976070791192 HCT116-unstranded 0.50 50872 GAGAACTTTCTAAGATGGATCCAGAGGGAAGCAAATTGTTGGATGATGCAATGGCAGCAGATAAAAGTGACGAGTGGTTTGCCAAACACAATAAACCCAAAGCTTCAGGTTAACGGAAGACATGATGCAGAGCAAGCCTCTGTGATTCCTGCCCAGCACCTGTGAGGCCTGACGTG|ACCCTTGAACATCTGTGAAGAAATGACTATTCTGCATGGAGGCTTCTTGCTGGCCGAGCAGCTGTTCCACCCTAAGGCACTGGCAGAATTAACAAAGTCTGACTGGGAACGTGTTGGACGGCCCATCGTGGAGGCCTTAAGGGAGATCTCCTCGGCTGCAGCACACTCCCAGCCCT 5 0.484506543141348 0.518985820486813 0.330905031870038 Y Y 3.47973990787175 3.5110433747387795 3.47973990787175 1 0.0 0.0 Y 0.00283286118980175 N Y 3691 10851 ENSG00000167699 ENSG00000179409 + - 17 17 685581 657239 utr3p coding GLOD4 GEMIN4 660337 647654 - - 0.0 663351 651272 - + N - - N SA467 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 9 1.14448999687423 1.1160554627904 1.14448999687423 1.1160554627904 4 - - 0.982106450303462 HCT116-unstranded 0.50 80828 GTCCGATGGGGCGCTTCTCCTCGGGGCCTCCAGCCTGAGTGGGCGCTGCTGGGCCGGCTCCCTCTGGCTTTTTAAGGACCCCTGTGCCGCCCCCAACGAAGGCTTCTGCTCCGCCGGAGTCCAAACGGAGGCTGGAGTGGCTGACCTCACTTGGGTTGGGGAGAGAGGTATTCTAGTGGCCTCCGATTCAGGTGC|TGCCCATAAACTCGTGTGTTATTTCACCAACTGGGCACACAGTCGGCCAGGCCCTGCCTCGATCTTGCCCCATGACCTGGACCCCTTTCTCTGCACCCACCTGATATTTGCCTTTGCCTCAATGAACAACAATCAGATTGTTGCTAAGGATCTCC 10 0.6715057164823229 0.932421805361372 0.296219868498748 N Y 3.6052936758779 3.4106386976703 3.4106386976703 0 0.9678338388015808 0.0 Y 0.0 N Y 3594 2145 ENSG00000116455 ENSG00000085465 + - 1 1 111991998 111970399 coding coding WDR77 OVGP1 111982512 111956936 - - 0.0 111991241 111969263 - + N - - N SA467 1 0.0 1.0 1 0 3 Y N 0.0 0.0 13 1.26533676673051 1.00231732645507 1.26533676673051 1.00231732645507 4 - - 0.97532020739463 HCT116-unstranded CGHSA0371 0.50 80824 GGCTGCAGTGCGCCTGGCTACCTTCCTACCTCGCTGGCTTGGCATCCTCAGCAAAGTGAAGTCTTTGTCTTTGGTGATGAGAATGGGACAGTCTCCCTTGTGGACACCAAGAGTACAAGCTGTGTCCTGAGCTCAGCTGTACACTCCCAGTGTGTCACTGGGCTGGTGTTCTCCCCACACA|GGGCTGGTTCTTGTGCTGAAACACCACGATGGTGCTGCCCATAAACTCGTGTGTTATTTCACCAACTGGGCACACAGTCGGCCAGGCCCTGCCTCGATCTTGCCCCATGACCTGGACCCCTTTCTCTGCACCCACCTGATATTTGCCTTTGCCTCAATGAACAACAATCAGATTGTTGCTAAGGATCTCCAGGATGAGAAAATTCTCTACCCAG 27 0.933386038725527 0.544361180819506 0.262690394653379 N Y 3.0971932416327403 3.39380340815762 3.0971932416327403 0 0.994489089792957 0.0 Y 0.0 N Y 3594 2145 ENSG00000116455 ENSG00000085465 + - 1 1 111991998 111970399 coding coding WDR77 OVGP1 111982512 111956936 - - 0.0 111985275 111969713 - + N - - N SA467 1 0.0 1.0 1 0 3 Y N 0.0 0.0 75 1.36485763602392 1.47859577235925 1.47859577235925 1.36485763602392 4 - - 0.98214709361388 HCT116-unstranded CGHSA0371 0.50 80825 GTGGGAACTAGATGAGAATGAGACACTTATTGTCAGCAAGTTCTGCAAGTATGAGCATGATGACATTGTGTCTACAGTCAGTGTCTTGAGCTCTGGCACACAAGCTGTCAGTGGTAGCAAAGACATCTGCATCAAGGTTTGGGACCTTGCTCAGCAGGTGGTACTGAGTTCATACCGAG|GGCTGGTTCTTGTGCTGAAACACCACGATGGTGCTGCCCATAAACTCGTGTGTTATTTCACCAACTGGGCACACAGTCGGCCAGGCCCTGCCTCGATCTTGCCCCATGACCTGGACCCCTTTCTCTGCACCCACCTGATATTTGCCTTTGCCTCAATGAACAACAAT 5 0.328934002626806 0.418987105379368 0.30593697583498103 N Y 3.75169126419961 3.4586884008934904 3.4586884008934904 0 0.99402923260108 0.0 Y 0.0 N Y 3594 2145 ENSG00000116455 ENSG00000085465 + - 1 1 111991998 111970399 coding coding WDR77 OVGP1 111982512 111956936 - - 0.0 111989717 111969713 - + N - - N SA467 1 0.0 1.0 1 0 3 Y N 0.0 0.0 8 1.06629502814369 1.14448999687423 1.14448999687423 1.06629502814369 4 - - 0.982106450303462 HCT116-unstranded CGHSA0371 0.50 37790 CTTTGCGGCGCTACACTAGAGCAGAGTACGAGTCTGAGGCGGAGGGAGTAATGGCAGGACAAGCGTTTAGAAAGTTTCTTCCACTCTTTGACCGAGTATTGGTTGAAAGGAGTGCTGCTGAAACTGTAACCAAAGGAGGCATTATGCTTCCAGAAAAATCTCAAGGAAAAGTATTGCAAGCAACAGTAGTCGCTGTTGGATCGGGTTCTAAAGGAA|AGTATATTCAACAGAACATAAGAGCAGATTGCTCCAATATTGACAAAATTCTTGAACCACCTGAAGGCCAAGATGAAGGTGTGTGGAAGTATGAACATTTAAGGCAGTTCTGCCTTGAGCTAAATGGACTTGCTGTCAAACTTCAGAGTGAATGCCATCCAGATACTTG 47 1.0 0.755495051082466 0.75816011175595 Y Y 3.67423639977982 3.555044694365741 3.555044694365741 2 0.9940981696661252 0.0 Y 0.0 N Y 20208 4100 ENSG00000115541 ENSG00000115540 + - 2 2 198368181 198418423 coding coding HSPE1 MOB4 198364718 198380295 + + 0.0 198365962 198400254 + - N - - N SA467 18 0.0 7.73333333333333 3 15 2 Y Y 0.0 0.0 15 1.32220583489818 1.22268496560476 1.32220583489818 1.22268496560476 4 - - 0.924830448983066 HCT116-unstranded 0.50 1209 GTGGCAGAGCCCAGCTCGAGCCAGGCTGGCAGCATGAGCAGTGCAGGCCCAAGACCACTACCCAGTGGCCCAGCATCCCCCAAACGCAAGCTGGAAGCAGCCGAGGAACCACCTGGTGAAGAACTCAGCAAACGGGCCCGGGTGGCAGAGTTGCCAACCCCAGAGCTGCCGAGCAAGGATGCCTGAGA|GCTCACCCATGACATCAGCCTGGAGGAGTTTGAGGATGAAGACCTCTCGGAGATCACTGATGAGTGTGGCATCAGCTTACAGTGCAAAGACACCCTGTCCTTACGGCCCCCGCGCGCCGGGCTGCTCTCTGCGGGCGGC 16 1.0 0.7339671930799979 0.6359868166163599 Y Y 3.42953077915294 3.5010341561346 3.42953077915294 0 0.0 0.0 Y 0.0 N Y 1498 1250 ENSG00000121671 ENSG00000121653 + - 11 11 45904798 45928016 utr3p coding CRY2 MAPK8IP1 45868669 45907202 + + 0.0 45893784 45919636 + - N - - N SA467 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 12 1.1089468292694398 0.7250806191377092 1.1089468292694398 0.7250806191377092 4 - - 0.972835903783584 HCT116-unstranded 0.50 80338 GGAACCAGGTGGAGGATCTCCTGGCCACATTGGAGAAGAGTGGTGCTGGTGTCCCTGCTGTCATCCTCAGGAGGCCAAATCAGTCCCAGCCTCTCCCACCATCTTCCCTGCAGCGATTTCTTCGAGCTCGAAACATCTCTGGCGTTGTTCTGGCTGACCACTCTGGTGCCTTCCATAACAA|GCTTCAGACTGGCACCCTGACCATGGAACCCTGAAGTGGCAGTGACTTCTAGAGCTCAGTGGCAGACCCCACGACCCTTCCTCCCCCTTCCTCCCCCTCCCACCACCAGCTTTCAAGCTCCCAGAGGGAGGGGTGGG 3 0.7621089041836341 0.8411816743061858 0.131153932829214 Y Y 3.73403059157974 3.5110433747387795 3.5110433747387795 0 0.0 0.0 Y 0.0 N Y 4771 152 ENSG00000162736 ENSG00000171786 + - 1 1 160328742 160342638 coding utr5p NCSTN NHLH1 160313062 160336857 + + 0.0 160324080 160340347 + - N - 0.399254843336779 N SA467 1 0.0 1.0 1 0 1 N Y 0.0 0.0 6 0.924122357724532 0.5971252157604671 0.924122357724532 0.5971252157604671 4 - 1.16666666666667 0.949301681163104 HCT116-unstranded 0.50 249109 ATTTACCCAGAGTCTTTTAGTCCTGCTATACAGCTGCACCTTGTACATCAAGCTCCATGTAATGTTCCTCCTTACCTCTCAAAGAATGAATCAAACCTTGGGGACCTCTTACTGGGCTTTCTTAAATATTATGCTACAGAATTTGA|ACAGATGTAAGCCAGTCAGTAGCTGGGCTTCATCTTGCATATTCCTAGGAGGAAATATGTTTATGAAGTGATGGCAAACGCGGCTGCTGCATTGGTCAGGAATGATAACCGCAGAGGAATTTAAACCCAGCCTTAAGGAGTAGGTAGAATTTACAGTTGCAGAAGTGGAGTATTGTCGGGGCTCTGCATTCTAAATGGAGGAACAGC 10 1.0 0.8137857473267349 0.4024287958794779 Y Y 3.2668017624283303 3.63721963736088 3.2668017624283303 1 0.0 0.0 Y 0.0 N N 1983 4215 ENSG00000164329 ENSG00000164309 + - 5 5 78982471 79096063 coding intron PAPD4 CMYA5 78907943 78985700 + + 0.0 78964851 79023365 + - N - 0.0221424671643028 N SA467 1 0.0 1.0 1 0 2 N Y 0.0 0.0 7 0.9525568918083628 1.22979359912572 1.22979359912572 0.9525568918083628 4 - 0.285714285714286 0.982014578826011 HCT116-unstranded 0.50 249108 CATCCCTCCAAAAAATTTACCCAGAGTCTTTTAGTCCTGCTATACAGCTGCACCTTGTACATCAAGCTCCATGTAATGTTCCTCCTTACCTCTCAAAGAATGAATCAAACCTTGGGGACCTCTTACTGGGCTTTCTTAAATATTATGCTACAGAATTTGA|GTTATCAGACCAGGATGAAGAGGGAAAGATCAAGCAGGAGTATATCATATCTGACCCCTCCTTTTCCATGGTGACAGTCCAAAGGGAAGATAGTGGGATAACCTGGGAAACCAATTCAAGTAGATCTTCTACTCCTTGGGCTTCAGAAGAAAGTCAGACTTCTGGTGTGTGTAGTCGGGAAG 4 0.997318747117694 0.5005942775432051 0.874441258377769 Y Y 3.2668017624283303 3.27291628556435 3.2668017624283303 1 0.0 0.0 Y 0.00291545189504383 N Y 1983 4215 ENSG00000164329 ENSG00000164309 + - 5 5 78982471 79096063 coding coding PAPD4 CMYA5 78907943 78985700 + + 0.0 78964851 79024738 + - N - 0.0221398366365732 N SA467 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 5 0.746406519700583 0.9525568918083628 0.9525568918083628 0.746406519700583 4 - 0.4 0.968042845536221 HCT116-unstranded 0.50 147160 GGGAAAACACTATCCTCTGAGATCCCAGATCATGAGTTTTTCACAGCATATGGTCCTGATTATGTGCTGGAAATCACGCCAAGCTGCCGGCCAGACCGCAATGAGCCCCACCGAATCCAACAAATCCTCAACTACATCAAA|GCACAACAGCTCCAGCTGGCAGCATCACTTCCCGCCAATTTATCCAACTTCTGCCAAGGCTCTGAAATGCCAACAACGTCGAGGCCTGCACTTGATGTCAAGGGTGGCACCTCACCTGCGAAGGAGGATGCCAACCAAGAGATGAGCTCCGTGGC 10 0.514521452402309 0.468154730633261 0.47537444813506 Y Y 3.25103939547889 3.3733608154261803 3.25103939547889 0 0.0 0.0 Y 0.0 N Y 769 67 ENSG00000147099 ENSG00000125931 + - X X 71792953 71527037 coding utr5p HDAC8 CITED1 71549366 71521488 - - 0.0 71571583 71522784 - + N - - N SA467 1 0.100840336134454 1.0 1 0 1 Y Y 0.0 0.100840336134454 6 0.902796457161658 0.845927388993994 0.902796457161658 0.845927388993994 4 - - 0.935916997747985 HCT116-unstranded 0.50 1317 GCTTCGGCGTAGTAAGGAGCCTGCAACAGAGTTTTGTTGTTTAGGGGGCGCGGCACCGCACCGCTCCCTTCACCTTGCAGCAGCCATGGCGAAAGGCAGAGTCGCCGAACGATCGCAGTTGGGCGCTCACCACACGACCCCCGTGGGGGACGGGGCAGCGGGGACGCGGGGTCTCGCGGCGCCTGGCAGCAGAGACCACCAGAAGG|CATTATGCCAGTACATACAGGCTTCTAAAGCCAGGGATGGTGCCAGCCCTTTCATTTCAAGTACGACTGAAGGAGAAAATTTTGAGCAGACACCATTGAGAAGAACATTCAAATCTAAGGTCCTTGCACGATATCCTGAGAACGTAGAATGGAATCCCTTTGACCAAGATGCAGTAGGAATGCTATGTATGCCGAAAGGGCTGGCATTCAAGACCCAGGCTGATCCCAGGGAGCCCCAATT 13 0.47712160216761 0.9849573918965192 0.4504854014516579 Y Y 3.448886868952 3.60103760561896 3.448886868952 1 0.0 0.0 Y 0.0 N Y 717 3103 ENSG00000166471 ENSG00000184014 + - 11 11 9336327 9286937 coding coding TMEM41B DENND5A 9302201 9160372 - - 0.0 9335868 9229179 - + N - - N SA467 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 11 1.47148713883829 1.5781166416526595 1.5781166416526595 1.47148713883829 4 - - 0.940127041047936 HCT116-unstranded 0.50 50868 TCTGGCAATAGCCAAGAACTGGCCAGGGGCCCCCAGGAGAGGACCCCCTGTGGGCCTGCTCTGCGGGAAGGCGAGGCTGCCGCTGTGGAGGGCCCGTGCCCGAGCCAGGAGTCCCTGTCCCAGGAGGAAAACCCGGAACCCACGGAGGATGAAAGGA|AGGAGCAGGAGCGGCTTCGCTTGGAGCAGGAGCGAGAGCAGGAACAGAAGAAGGCCAATAGCCTGGCCAGGCTGGCACATACCCTTCCTGTGGAGGAACCCCGCATGGAGGCGCCACCCCTGCCTCTGTCTCCACCGGCTCCCCCGCCGGCACCCCCACCACCACTTGCCACCCC 21 1.0 0.457520054480308 0.271286705228738 Y Y 2.94955489687844 3.00822273295264 2.94955489687844 1 0.0 0.0 Y 0.0 N N 6667 2540 ENSG00000127804 ENSG00000070444 + - 17 17 2415185 2304412 coding coding METTL16 MNT 2319343 2287354 - - 0.0 2323551 2298748 - + N - - N SA467 1 0.378048780487805 1.0 1 0 1 Y Y 0.0 0.378048780487805 21 1.06629502814369 1.1658158974371 1.1658158974371 1.06629502814369 4 - - 0.956899693456236 HCT116-unstranded 0.50 22753 AGAAGATGGAGGACGAGCTGCGGGATGCAGTGCTGCTGGTATTTGCCAACAAGCAGGACATGCCCAACGCCATGCCCGTGAGCGAGCTGACTGACAAGCTGGGGCTACAGCACTTACGCAGCCGCAC|GACCTGGGAGATCTTGGTGAGCAATGAGCATGAGACACAGGCCGTGGTGCGACTAAAGAGCGTGCAGGGCCTCTACCTGCTGTGTGAGTGTGATGGCACCGTGTGTTATGGCCGCCCAAGGACCAGCCACCATGGGTGCTTTCTACTGCGTTTCCACCGGAACAGCAAGTGGACCCTCCAGTGCCTAATCTCTGGTCGTTATTTGGAGTCCAATGGCAAGGACGTGTTTTGCA 16 0.2404320353147389 0.8403884341546031 0.8579343900935359 Y Y 3.40272612382943 3.44781394638876 3.40272612382943 0 0.0 0.0027700831024931602 Y 0.0027700831024931602 N Y 10865 357 ENSG00000004059 ENSG00000106328 + - 7 7 127231759 127242198 coding coding ARF5 FSCN3 127228399 127231463 + + 0.0 127231142 127235361 + - N - - N SA467 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 6 0.6468856504071719 0.547364781113761 0.6468856504071719 0.547364781113761 4 - - 0.903389357837968 HCT116-unstranded CGHSA0795 0.50 206733 ATGCCTGTTCCCTTCATGTCGGTGATGTGGAGCAGCTCCCCTGAGCTCTGCAGCTAGTATCTCCAGCTTCAGAGGCAGATTGTGCAATGTCACTGCATGCTTCTGGCTGGTTCTCAGAAACTGAATTCTATGGAGCTATCTGACAACACATGGGAAACGATCAAAAAGACTCTCCCAGCAGGCAAACTTT|CTGACTGTGAGTTCATGATCCTCAGAGGTTTATCTGGGATAGAGGGAGGACTGGGGTTAAGACGTGTTCTTGCACAGAAAATTCGTGCTGGCCTCTGCCAGATACTTGTGGCCACCATCAGTTGGAGACTGCTTTAAGATCCCCAT 6 0.493514793829023 0.83122463940154 0.0629298556573209 Y Y 3.21431880750704 3.40591861909494 3.21431880750704 0 0.0 0.0 Y 0.0 N N 1179 4905 ENSG00000087589 ENSG00000101138 - + 20 20 55034396 54979518 utr5p downstream CASS4 CSTF1 54987168 54967427 + + 0.0 54987342 54982837 - + N - - N SA467 1 1.0 1.0 1 0 2 N Y 0.0 1.0 7 1.22268496560476 0.831710121952078 1.22268496560476 0.831710121952078 4 - - 0.9711171877456852 HCT116-unstranded 0.50 206881 CTGTCGTTGGGGCACAACAATATTGTACGCTGCATAGTGCACTCCCCCACCAACCCCGGGTTCATGACGTGCAGCGATGACTTCAGAGCGCGGTTTTGGTACCGGAGATCGACCACTGACTGAGCCACCCTCTCCGTAGGGTTCTTTCTCGAGGACTCTACCCTCCTCCCCCACGTCCTGTCTCAGCTGCAGTC|AAAGTTTGCCTGCTGGGAGAGTCTTTTTGATCGTTTCCCATGTGTTGTCAGATAGCTCCATAGAATTCAGTTTCTGAGAACCAGCCAGAAGCATGCAGTGACATTGCACAATCTGCCTCTGAAGCTGGAGATACTAGCTGCAGAGCTCAGGGGAGCTGCTCCACATCACCGACATGAAGGGAACAGGC 8 0.357173048791834 0.785924358523014 0.961621574618634 Y Y 3.0537745638283904 3.21431880750704 3.0537745638283904 6 0.0 0.0 Y 0.0026109660574412693 N N 4905 1179 ENSG00000101138 ENSG00000087589 + - 20 20 54979518 55034396 utr3p utr5p CSTF1 CASS4 54967427 54987168 + + 0.0 54978854 54987342 + - N - - N SA467 1 0.0 1.0 1 0 2 N Y 0.0 0.0 12 1.37907490306584 1.34353173546105 1.37907490306584 1.34353173546105 4 - - 0.91808398731809 HCT116-unstranded 0.50 209082 CAACACCATATCATGGGAGCAGAAGAAAGGTGTTCCTTCCCATGGATATTTGTATGCTGCATGGTGTTTCACAAGAGGACTTTCTACGGAGGAACCAAGATAAAAATGTGAGAGATGTAATATATGACATTGCCAGTCAAGCACACTTGCACCTAAAGCAT|GCTATTAGTGAAAGATGGTGGATCGCTTGGCAAACAGTGAAGCAAATACTAGACGTATAAGTATAGTGGAAAACTGTTTTGGAGCAGCTGGTCAACCTTTAACTATACCTGGACGAGTTCTTATTGGAGAAGGAGTATTGACTAAGTTGTGCAGGAAAAAGCCC 20 0.0384183024614152 0.832493348601283 0.38729813306168 Y Y 3.5303596117444904 3.64553343878587 3.5303596117444904 0 0.0 0.0 Y 0.0 N Y 725 1635 ENSG00000156170 ENSG00000175895 + - 8 8 96128683 96168912 coding utr5p NDUFAF6 PLEKHF2 95907995 96146032 + + 0.0 96060786 96166259 + - N - - N SA467 1 0.0179640718562874 1.0 1 0 2 N Y 0.0 0.0179640718562874 23 1.5781166416526595 1.18714179799998 1.5781166416526595 1.18714179799998 4 - - 0.9514365004191492 HCT116-unstranded 0.50 209458 TTGGAAAAGCACAAGGCATTGTCACTTGCTTGAGAGCAACACCATATCATGGGAGCAGAAGAAAGGTGTTCCTTCCCATGGATATTTGTATGCTGCATGGTGTTTCACAAGAGGACTTTCTACGGAGGAACCAAGATAAAAATGTGAGAGATGTAATATATGACATTGCCAGTCAAGCACACTTGCACCTAAAGCAT|GCTATTAGTGAAAGATGGTGGATCGCTTGGCAAACAGTGAAGCAAATACTAGACGTATAAGTATAGTGGAAAACTGTTTTGGAGCAGCTGGTCAACCTTTAACTATACCTGGACGAGTTCTTATTGGAGAAGGAGTATTGACTAAGTTGTGCAGGAAAAAGCCCAAAG 21 0.402945158220829 0.818445121257861 0.441124016684859 Y Y 3.5303596117444904 3.64553343878587 3.5303596117444904 0 0.0 0.0 Y 0.0 N Y 725 1635 ENSG00000156170 ENSG00000175895 + - 8 8 96128683 96168912 coding utr5p NDUFAF6 PLEKHF2 95907995 96146032 + + 0.0 96060786 96166259 + - N - - N SA467 1 0.0 1.0 1 0 2 N Y 0.0 0.0 8 1.27955403377243 1.13738136335327 1.27955403377243 1.13738136335327 4 - - 0.973175330076374 HCT116-unstranded 0.50 132662 GGCATTGGGCCTAGGCTGGGATGCTGAGTTATCCACTGGAGCATCAGCAGTACAGGCAGGCACAGAGGCAGTGGATCCATCGGAGGTGGCAGGTGTAGGATCGTCTTCCTCAGGTACTCGCATGGGCATGTCACTGACTTTACATGCTGCTGCAGCTCCTTGGTGAGCTGGCCCTGGTCATGGGACAGGAA|CTTTAGTGACTGAGGTGTGGTTTAGGACTTCAAGGTTGGATGGCCCAGGCGGGAAACAGAGTGGAGAGCTCAGTAGGCCGTCTGAGACTGCTGCTGGCGGTAGCCACCGCGGCGCATGTAGCCCTCGTTTTTGCG 5 1.0 0.902541601856713 0.195631155135842 N Y 3.48912663185998 3.281437773652029 3.281437773652029 2 0.9704609808585342 0.0 Y 0.0 N N 5591 24886 ENSG00000169246 ENSG00000205609 - + 16 16 21459888 28415200 coding utr3p NPIPL3 EIF3CL 21413548 28390900 - - 0.0 21436386 28391050 + - N - 0.0572447861329079 N SA467 26 0.0 18.8 8 5 1 Y N 0.0 0.0 5 0.8956878236407 0.753515153221541 0.8956878236407 0.753515153221541 4 - 52 0.9067276164498268 HCT116-unstranded 0.50 209623 ATCAAGACTCTTCCACCTGCTACTTCTACCGAGCCATCTGTAATCTTATCAAAAAGTGATTCTGACAAGAGCTCTTCCCAAGTGCCGCCAATACTACAAGAGACAGATAAATCCAAGTCAAATACCAAGCAAAATAGTGTGCCTCCTTCACAGA|AGGCAGCACAGAGAAGGAGCCAGATTATCTGGTGAACCTGATTAGTAACGCAATCCACCACACAGTCTTCAGGAGCATTACTTCTGCTGAATTTGAACTTTCATCTCTCAGCTGACAACCATTCTCATATCAACCATCTTACCTGCTGATACTGCCAATTTCAGCAGCATCGCCCTCTTAAGGACTATTTGTACA 3 0.904871222492126 0.262812101150687 0.5692136572728199 N Y 3.54040868314203 3.6565358743666 3.54040868314203 1 0.0 0.0 Y 0.0 N N 7933 52009 ENSG00000147649 ENSG00000104341 + - 8 8 98740998 98865241 coding upstream MTDH LAPTM4B 98656407 98787285 + + 0.0 98735263 98770979 + - N 2.26744143173122 - N SA467 1 0.5721649484536079 1.0 1 0 1 N N 0.0 0.5721649484536079 5 0.65399428392813 1.2155763320838102 1.2155763320838102 0.65399428392813 4 77.4 - 0.9530224053840248 HCT116-unstranded 0.50 249044 TGGAAAAGAAGTTCCGGCTGGACATATTCAAGGATTTTCAGGAGGAAACGGTGAAGGACTATGAAGCTGGCCAACTGTATGGGCTGGAGAAGTTCTGGGCCTTCTTGAAATATTCCAAAGCCAAAAATTTGGACATTGACCCCAAACTGCAAGAATACCTCGGCAAATTCCGACGTCTTGAAGACTTCCGAGTAGAT|GACACAGAATTTCCAGGTGTTGTGGTGCGACCAATTGGTGAATTTCGTAGTTCCATAGATTACCAATATCAGCTTCTGCGGTGCAATGTTGACCTTTTAAAAATTATCCAGCTGGGCCTTACATTCACAAATGAGAAGGGAGAGTATCCTTCTGGAATCAATACTTGGCAGTTCAA 15 0.855382742403865 0.71659666822312 0.233405733434766 Y Y 3.74913061111987 3.5565722776755897 3.5565722776755897 0 0.0 0.0 Y 0.0 N Y 19532 2928 ENSG00000155506 ENSG00000155508 + - 5 5 154197167 154256353 coding coding LARP1 CNOT8 154092462 154237113 + + 0.0 154191200 154244752 + - N - - N SA467 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 12 1.40750943714967 1.2511194996886 1.40750943714967 1.2511194996886 4 - - 0.962165212683794 HCT116-unstranded 0.50 240925 GACACTGTCAGAAATCACTGTGCCAGTCCATGAGGTGTTTGCCAGCAAGGATGTCGAAGGCTGGGCCTCTGTCTTCATCTCACACAGACTCTCTGGGGCAGCTCCCGCTTCTGCAAGGGAGGGTTCATCTTCCTGAGGAGAC|AGTTCTGGATGCCAAAAGTCCGAAATTAAGGTGTCAGCACGCCACTTCCTTCAAAGGCTCAGAGGACAATCCTTCCTTGACTCTTCAGTTTCTGGTAGCTCCTGGTGTTCCACTTTTTTTTCCCCTGTAGGGTCTTGCTCTGTCATCCAGGC 3 0.34192931067561405 0.612264997311308 0.31800218659993296 Y Y 3.5167965230840297 3.7255184510618697 3.5167965230840297 1 0.0 0.0 Y 0.0 N N 50 90 ENSG00000063127 ENSG00000197813 - + 19 19 49828474 49843559 utr5p intron SLC6A16 AC011450.1 49792897 49831424 - - 0.0 49814668 49834333 + - N - 0.678560937740415 N SA467 1 0.657342657342657 1.0 1 0 2 N Y 0.0 0.657342657342657 5 0.8530360225149519 0.888579190119742 0.888579190119742 0.8530360225149519 4 - 0 0.9797053234775353 HCT116-unstranded 0.50 146310 ACTTCCTTACTGGAAACTTCATCTCAACCAATGCGTCCGTCATTATTGAACAGCTCATGATATTCCTGCTCAGCAGAATTGCACAGCAGTTGTTGGTAGCAAGTCAAGTCCCAGACTCTGAGAGTGTGACAGATTGCCCCCACAGCGCTGCTTCTCCAGTGCTGGGGCAGCATGCCGAGTGCCCCTGTTCGTGGTGACTGACC|GTTGGAAATGGTCACACATTCCTTCTCCCCTTAGAGCGAACACTGTCATAACCACTGAAGCGCGGGCCGAGGAGCGCCACATCGGCCACAGGCTTTGTTGCCCCGCCTTCAAAGCCACTGCGCGTGCGCATTGCTTTGACTTCACGTTCCCAGG 6 1.0 0.299619244737739 0.5 Y Y 3.5010341561346 3.7574444125448494 3.5010341561346 0 0.993524631792788 0.0 Y 0.0 N Y 517 359 ENSG00000147119 ENSG00000230844 - + X X 46457843 46407671 intron intron CHST7 ZNF674-AS1 46433219 46404928 + + 0.0 46457195 46405062 - + N - 0.642832902329789 N SA467 1 0.0 1.0 1 0 1 N Y 0.0 0.0 14 1.27955403377243 1.1160554627904 1.27955403377243 1.1160554627904 4 - 2.64285714285714 0.9622482220917892 HCT116-unstranded 0.50 79762 GTGTAACCAGCTGGGAGCCAGCCGGCAGGACGCTGTGAGTTGGCGTGCTAGTGGGATGGCAGATGAGGAAGAAGACCCCACG|GCTATCAATATGACGGCTGAAGAAACAGTGAATGTAAAAGAGGTTGAAATCATTAAGCTAATTTTGGACTTCCTGAATTCAAAGAAGCTTCACATTAGTATGCTGGCCCTGGAGAAGGAAAGTGGAGTCATAAATGGCCTGTTTTCAGATGATATGCTTTTCCTGAGGCAGCTAATACTTGATGGTCAATGGGATGAAGTTCTTCAGTTCATTCA 5 0.8072647525392259 0.23012918273035896 0.4374371208328859 N Y 3.5110433747387795 3.5010341561346 3.5010341561346 0 0.0 0.0 Y 0.06412669831396299 N Y 271 2096 ENSG00000197780 ENSG00000085433 + - 1 1 109618624 109584850 coding utr5p TAF13 WDR47 109605121 109512836 - - 0.0 109618543 109566143 - + N - - N SA467 1 0.0 1.0 1 0 1 N N 0.0 0.0 5 0.44784391182035 0.881470556598784 0.881470556598784 0.44784391182035 4 - - 0.919214063168001 HCT116-unstranded 0.50 241499 ACCCAGCCTTCTTTCAGACCACGGTCACCGCCCAGATCCTGCTGAAGGCCCTCACCAACTTGCCGCACACAGACTTCACCCTGTGCAAGTGCATGATCGACCAGGCACATCAAGAAGAACGGCCAATCCGACAGATTTTGTACCTCGGGGACCTGCTGGAGACCTGCCATTTCCAGGCCTTCTGG|ACCTTCACGGCATGGTGCAACTCCCACCTGCGGAAGGCAGGCACACAGATCGAGAACATTGATGAGGACTTCCGAGACGGGCTCAAGCTCATGCTGCTCCTGGAGGTCATATCAGGGGAGCGGTTACCTAAGCCGGAGCGGGGGAAGATGAGAGTGCACAAAATCAACAATGTGAACAAAGC 30 0.457584461105065 0.8336727585512049 0.471447993513205 Y Y 3.41592783769912 3.6659225983548303 3.41592783769912 0 0.9945204252269472 0.0 Y 0.0 N Y 9835 79039 ENSG00000178982 ENSG00000130402 + - 19 19 39127595 39222223 coding coding EIF3K ACTN4 39109735 39138289 + + 0.0 39116742 39191240 + - N - - N SA467 2 0.0 1.02941176470588 1 1 1 Y Y 0.0 0.0 34 1.40750943714967 1.31509720137722 1.40750943714967 1.31509720137722 4 - - 0.930238804701642 HCT116-unstranded 0.50 37813 GCAGAAGACCGACACCTCCGACAAGAAGTTGCAGCTGATTAAGGACTATCGGGAGAAAGTGGAGTCCGAGCTGAGATCCATCTGCACCACGGTGCTGGAATTGTTGGATAAATATTTAATAGCCAATGCAACTAATCCAGAGAGTAAGGTCTTCTATCTGAAAATGAAGGGTGATTACTTCCGGTACCTTGCTGAAGTTGCGTGTGGTGATGATCGAAAAC|TTTTCCTGAGTGTTCTCATGACATGAAAGCTGGCTTCCCCCAGAGTGTGTGATTCAAGAGGAAACAAGCAAGCAAGAGAGCACCTGAGATGGAGGACAGAGTTTCTTGTGTCCTAACCTCAGAAGTGACATCACTTCGGCTGCATGCTAGTGGTCACAGACCAACTATGGCCCAGTGTAGAAGAGGAAGCAGGCATCATTGGGGGCCATCTTGGAG 8 0.592443755700401 0.972916342572769 0.393429401966767 Y Y 3.59165088163073 3.4655144718019804 3.4655144718019804 0 0.0 0.0 Y 0.0 N N 37994 2501 ENSG00000134308 ENSG00000151694 + - 2 2 9771143 9695921 coding upstream YWHAQ ADAM17 9724101 9628615 - - 0.0 9731521 9699330 - + N - - N SA467 3 1.0 1.22222222222222 1 1 2 N Y 0.0 1.0 9 0.9881000594131528 1.47859577235925 1.47859577235925 0.9881000594131528 4 - - 0.926477465516092 HCT116-unstranded 0.50 50674 TTTGATGCTCTTGATCAGGCAGTTGAAAATCAAAGAGGTCACTCTGGGGAAGTTATATGAAGCCTACAGTAAAGTCTGTCGCAAACAGCAGGTGGCGGCTGTGGACCAGTCAGAGTGTTTGTCACTTTCAGGGCTCTTGGAAGCCAGGGGCATTTTAGGATTAAAGAGAAACAAGGAAACCCGTTTGACAAAG|CATCACAGGACATGGCCCCCTCAGCCACCTAGCTGGGGCCCATCTAGGAGTGGCATCTTTTTTGGTGCCCTGAAGGCCAGCTCTGGACCTTCCCAGGAAAAGTGCCAGCTCACAGAACTGCTTGACCAAAGGACCGGCTCTTGAGACATCCCCCAACCCACCTGGCCCCCAGCTA 23 0.799822965993742 0.4740742155014529 0.709348974472937 Y Y 3.0460044763065297 3.25360004855864 3.0460044763065297 0 0.0 0.0 Y 0.0 N Y 3774 4066 ENSG00000094804 ENSG00000131759 + - 17 17 38459171 38513094 coding utr5p CDC6 RARA 38443885 38465444 + + 0.0 38457860 38487109 + - N - - N SA467 1 0.0 1.0 1 0 4 N Y 0.0 0.0 12 1.26533676673051 1.22979359912572 1.26533676673051 1.22979359912572 4 - - 0.9744470344016308 HCT116-unstranded 0.50 50282 ATTCTCAAACCACTGTCTGAATGTAAATCACCTTCTGAGCCTCTGATTCCCAAGAGGGTTGGTCTTATTCACATATCCCAAGTCATCTCAGAAGTTGATGGTAACAGGATGACCTTGAGCCAAGAAGGAGCACAAGATTCCTTCCCTCTTCAGCAGAAGATCTTGGTTTGCTCTTTGATGCTCTTGATCAGGCAGTTGAAAATCAAAGAGGTCACTCTGGGGA|AGCATCACAGGACATGGCCCCCTCAGCCACCTAGCTGGGGCCCATCTAGGAGTGGCATCTTTTTTGGTGCCCTGAAGGCCAGCTCTGGACCTTCCCAGGAAAAGTGCCAGCTCACAGAACTGCTTGACCAAAGGACCGGCTCTTGAGACATCCCCCAACCCACCTGGCCCCCAGCTAGGGTGGGGGCTCCAGGAGACT 27 0.923884940047478 0.973391833605157 0.591782221927287 Y Y 3.404223201915741 3.26294691975352 3.26294691975352 0 0.0 0.0 Y 0.0 N Y 3774 4066 ENSG00000094804 ENSG00000131759 + - 17 17 38459171 38513094 coding utr5p CDC6 RARA 38443885 38465444 + + 0.0 38457282 38487109 + - N - - N SA467 1 0.0 1.0 1 0 4 N Y 0.0 0.0 25 1.60655117573649 1.4359439712335 1.60655117573649 1.4359439712335 4 - - 0.982014578826011 HCT116-unstranded 0.50 50281 CTTCAAGCTAGAGAAAAATGTAAGCCACAGCTGTTGAACTTCCCACCTTATACCAGAAATCAGATAGTCACTATTTTGCAAGATCGACTTAATCAGGTATCTAGAGATCAGGTTCTGGACAATGCTGCAGTTCAATTCTGTGCCCGCAAAGTCTCTGCTGTTTCAGGAGATGTTCGCAAAGCACTGGATGTTTG|CAGCATCACAGGACATGGCCCCCTCAGCCACCTAGCTGGGGCCCATCTAGGAGTGGCATCTTTTTTGGTGCCCTGAAGGCCAGCTCTGGACCTTCCCAGGAAAAGTGCCAGCTCACAGAACTGCTTGACCAAAGGACCGGCTCTTGAGACATCCCCCAACCCACCTGGCCCCCAGCTAGGGTGGGGGCTCCAGGAGACTGAGAT 21 0.6474793100800159 0.946865850555794 0.687309652294585 Y Y 3.4738587784505097 3.2399572543114705 3.2399572543114705 0 0.0 0.0 Y 0.002506265664160461 N Y 3774 4066 ENSG00000094804 ENSG00000131759 + - 17 17 38459171 38513094 coding utr5p CDC6 RARA 38443885 38465444 + + 0.0 38451708 38487109 + - N - - N SA467 1 0.0 1.0 1 0 4 N Y 0.0 0.0 26 1.33642310194009 1.4643785053173302 1.4643785053173302 1.33642310194009 4 - - 0.9711171877456852 HCT116-unstranded 0.50 176086 AAATCAGGTGATACCCTTTTGCAGGGCCCTTTTCCTGGTTCTTGAGAATGTAGCAAGATTTCCCCGCTCAGGATGGGGATGGGTCGGAGGAGCCACTCTGGAAGTTTCCCGGGCAAGAAAGTGTTGGCAATAATAATAACGGG|AGTTCTGGAAGCTGAAAGTACAACAGGAAGGTGTTGGCAGGGTTGGTTCCTTCTGACAGCTGTAAGGCAGGGTCTGTTCCACGCCTCTCCCCTGGCTTCTGGTGGTTTGCTGGTCCTCTTAGGTGTTCCTTGGCTTGCAGATGCATTATCCCGACCTCAGCCTTCACGTGGCGTTCTCCCCATGTGCGTT 8 1.0 0.44156290596498 0.0523654806700179 Y Y 3.41472693405989 3.48271113610542 3.41472693405989 0 0.9930279301536792 0.0 Y 0.0 N N 1512 1828 ENSG00000171792 ENSG00000111203 - + 12 12 2998626 2968957 intron intron RHNO1 ITFG2 2985424 2921788 + + 0.0 2985553 2946122 - + N - 0.308542737129291 N SA467 1 1.0 1.0 1 0 1 N Y 0.0 1.0 6 0.924122357724532 1.18003316447902 1.18003316447902 0.924122357724532 4 - 4.33333333333333 0.974684087973665 HCT116-unstranded 0.50 207444 AGAAACAGAAGGATTTGGACAAGAGTAACTTCTGAGAACTTGCACCATGAATGGGCAAGAACTTATTTGCAATGTTTGTCCTTCTCTGCCTGTTGCACATCTTGTAAAATTGGACAATGGCTCTTTAGAGAGTTATCTGAGT|GCAGAGGTGGAGGAGACACTGAAGCGACTGCAGAGCCAGAAGGGAGTGCAGGGAATCATCGTCGTGAACACAGAAGGCATTCCCATCAAGAGCACCATGGACAACCCCACCACCACCCAGTATGCCAGCCTCATGCACAGCTTCATCCTG 2 0.4959608415896271 0.9753693477276292 0.964777112082336 Y Y 3.56488607910057 3.22733394946506 3.22733394946506 0 0.0 0.0 Y 0.0 N N 1820 4096 ENSG00000078747 ENSG00000125971 + - 20 20 33099198 33128762 utr3p coding ITCH DYNLRB1 32951041 33104214 + + 0.0 33095713 33114073 + - N - - N SA467 1 0.0 1.0 1 0 2 N Y 0.0 0.0 5 0.5971252157604671 0.810384221389205 0.810384221389205 0.5971252157604671 4 - - 0.945564786271182 HCT116-unstranded 0.50 207447 AGCAACTGAAGGAAAAGCTGTTGTTTGCCATAGAAGAAACAGAAGGATTTGGACAAGAGTAACTTCTGAGAACTTGCACCATGAATGGGCAAGAACTTATTTGCAATGTTTGTCCTTCTCTGCCTGTTGCACATCTTGTAAAATTGGACAATGGCTCTTTAGAGAGTTATCTGAGT|ACACTCCTGGAAGGAGAACCAAATCCTTCCTCACTGAAGAGCAGCTACTGTGGAATGAAACTTTGGAGTTAGATCATCGTTGAATCCAGCAAGCTACAGTGCCTGGGAGAAACAGCATTTATAAAGTATCGAGGTTACCGATACTTCCCTGAAGCTACCGGAGATAACGTTAT 15 1.0 0.542220433273372 0.6991188651167219 Y Y 3.56488607910057 3.38759559906577 3.38759559906577 0 0.0 0.0 Y 0.0 N N 1820 4096 ENSG00000078747 ENSG00000125971 + - 20 20 33099198 33128762 utr3p upstream ITCH DYNLRB1 32951041 33104214 + + 0.0 33095713 33102984 + - N - - N SA467 1 0.0 1.0 1 0 2 N Y 0.0 0.0 10 1.26533676673051 1.23690223264668 1.26533676673051 1.23690223264668 4 - - 0.988368259231452 HCT116-unstranded 0.50 249126 TGCTCCCGCCGGCACCATGGCCAAGACCGTGGCCTATTTCTACGACCCCGACGTGGGCAACTTCCACTACGGAGCTGGACACCCTATGAAGCCCCATCGCCTGGCATTGACCCATAGCCTGGTCCTGCATTACGGTCTCTATAAGAAGATGATC|CTGGAGAGATTTACCAGCATGAGAATTAAGAAGGAGAAGGAAAAGCCCAATTCTGCTCATAGAAATTCTTCTGCATCATATGGGGATGATCCCACAGCACAGTCATTGCAAGATGTTTCAGATGAACAAGTGCTGGTTCTCTTTGA 8 0.7664484851963921 0.5562078357988821 0.798352430842038 Y Y 3.84271856484967 3.26501305929329 3.26501305929329 0 0.99317344013107 0.0 Y 0.0 N Y 3365 31852 ENSG00000171720 ENSG00000131504 + - 5 5 141016437 140998622 coding coding HDAC3 DIAPH1 141000443 140894583 - - 0.0 141016115 140966764 - + N - - N SA467 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 5 1.10183819574848 0.9738827923712372 1.10183819574848 0.9738827923712372 4 - - 0.952282252493995 HCT116-unstranded 0.50 142108 ACCAACAGCCTCCTGCGAGAGCAGATTAGTCTCTATCCAGAAGTTAAAGGAGAGATTGCTCGTAAAGATGAAAAGCTGCTGTCGTTTCTAAAAGATGTGTATGTTGATTCCAAAGATCCTGTGTCTTCCTTGC|AGGCAAAAGGACTCTTGTGGAAGATGGAACTCATTGTCCATTTTCCAGAATGTATTTCCAAGCCCATCAATGGGACCTGATACTGCTGTTCTGTGTTGAAATGCTTGAAGAACTCCTGCATCTCTGCTTGCATCTTCCATCCTACTGAAACCATGGTCTTCTCGGCAGTGTTGACTGCGTTCCA 4 0.910262872976228 0.35562680497300103 0.68858569123125 Y Y 3.36716658670346 3.63655728995158 3.36716658670346 10 0.0 0.0 Y 0.0 N Y 4879 263 ENSG00000123545 ENSG00000112218 + - 6 6 97345757 97285353 coding utr5p NDUFAF4 GPR63 97337189 97245888 - - 0.0 97344620 97247757 - + N - - N SA467 2 0.0 1.14285714285714 1 1 1 Y Y 0.0 0.0 7 0.703754718574836 0.632668383365256 0.703754718574836 0.632668383365256 4 - - 0.9040018608928472 HCT116-unstranded 0.50 1560 AAAACTTACAAAACATCTGTAAGTTAAGTCTGTTGTAAGAAAAGGTATCCCTGCCATTGGTAAGCCAGCAGCTATGCGAGCCTTTGTCACATTCAAGATGCGTCGAAAAAGACTGTTTGCTATGAGGCCACAAAGAGCAGCATTTAATCCAACATAAACCGATCCATTTTCAAGTAGATTCCTT|GGGCGCTTCCTCAGTTCCCACCGGCACCACACCTGAATCCCTTGGCTTAGTCCCAGCCTCATACCCGAACACCACCATTTTGGTGGCTCATGTGACTTGCCGGTGGGCGGGGACCCAG 5 0.5649036641546851 0.236531966558442 0.195631155135842 Y Y 3.41526549028982 3.5110433747387795 3.41526549028982 0 0.0 0.0 Y 0.0 N Y 1226 1616 ENSG00000171202 ENSG00000171204 - + 11 11 85367591 85347580 coding coding TMEM126A TMEM126B 85359011 85339629 + + 0.0 85365107 85339732 - + N - 1.38870303067426 N SA467 1 0.0 1.0 1 0 2 N Y 0.0 0.0 6 0.767732420263457 0.547364781113761 0.767732420263457 0.547364781113761 4 - 35.1666666666667 0.943844485898028 HCT116-unstranded 0.50 622 AGCTTTTTGTAATTGATGCTTTGTATTCAGATAATATAAGCAAGGAAAACTGTGTTTTCAGAAGCTCACTGATTGGCATAGTTTGTGGTGTTTTCTATCCCAGTTCTTTGGCTTTTACTAAAAATGGACGCCTGGCAACCAAG|CTCAAAATGGAAAATCATAAATCCAATAATAAGGAAAACATAACAATTGTTGATATATCCAGAAAAATTAACCAGCTTCCAGAAGCAGAAAGGAATCTACTTGAAAATGGATCGGTTTATGTTGGATTAAATGCTGCTCTTTGTGGCCTCATAGCAAACAGTCTTTTTCGACGCATCTTGAATGTGACAAAGGCTCGCATAGCTGCTGGCTTACCAATG 18 1.0 0.4998884144817539 0.660767444468804 Y Y 3.48639814491089 2.9423140180167 2.9423140180167 0 0.0 0.00275482093663915 Y 0.00275482093663915 N Y 1616 1226 ENSG00000171204 ENSG00000171202 + - 11 11 85347580 85367591 coding utr5p TMEM126B TMEM126A 85339629 85359011 + + 0.0 85346822 85361293 + - N - - N SA467 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 10 0.9881000594131528 1.55679074108979 1.55679074108979 0.9881000594131528 4 - - 0.983338172346777 HCT116-unstranded 0.50 229600 CCCCTCAGACATCAGCATGGCTGCCCCCGACTTCAGCAGAACATGATCATTCTCTGTCATGTGTGGTAACTCCTCAAGATGGGGAGACTTCAGCACAAATGATAGAAGAAAATTTGAACTGCCTTGGCCATTTAAGCACTATTATTCATGAGGCAAATGAGGAACAGGGCAATAGTATGATG|CACTTTATTTGCAACAAGTTTAGTTGCTCCTGAAGGGCAGGATCTCTGCCGGAAGCAAGTGCGTGCCACACAGTGGGGCTCCGCATACACTGCAAAAGGACAAATAAACCGAACAGCTACCGTTTGAGAGTGAGCGAGTGGGTTCTCTGCACAAGAACAAA 3 0.364653081362292 0.697294437668978 0.509937612893545 Y Y 3.3791139637714305 3.48639814491089 3.3791139637714305 0 0.0 0.0 Y 0.0338725985844286 N N 6352 6404 ENSG00000213341 ENSG00000107566 + - 10 10 101989376 101948091 coding utr5p CHUK ERLIN1 101948055 101909851 - - 0.0 101950626 101946199 - + N - 37.9413476583946 N SA467 1 0.0 1.0 1 0 1 N Y 0.0 0.0 7 1.26533676673051 0.93123099124549 1.26533676673051 0.93123099124549 4 - 2.71428571428571 0.958774445552552 HCT116-unstranded 0.50 131357 CCATATATTCCTGCACATATTACAAAGCCTAAGGAACATAAGAAGTTGTTTCTGGTTCAGCTTCAAGAAAAAGCCTTGTTTGCAGTCCCTAAAAATTACAAGCTGGTAGCTGCACCATTGTTTGAATTGTATGACAATGCACCAGGATATGGACCCATCATTTCTAGTCTCCCTCAGCTGTTGAGCA|GGTTCTAGTAAATACCGCTTGCTGTGTTTTGATGTTGGTGGCTAAGCTCATCCAGTGTATTGTGTTTGGCCCTCTTCGAGTGAGTGAGAGACAGCATCTCAAAGACAAATTTTGGAATTTTATTTTCTACAAGTTCATTTTCATCTTTGGTGTGCTGAATGTCCAGA 3 1.0 0.364088191688104 0.733276499314006 Y Y 3.49744043328497 3.41741556821562 3.41741556821562 0 0.0 0.0 Y 0.00281690140845059 N Y 11753 9327 ENSG00000167005 ENSG00000159461 + - 16 16 56486111 56459450 coding utr5p NUDT21 AMFR 56463045 56395364 - - 0.0 56468243 56448256 - + N - - N SA467 2 0.0 1.125 1 1 1 N Y 0.0 0.0 8 1.27244540025147 0.9809914258921948 1.27244540025147 0.9809914258921948 4 - - 0.9429505054426108 HCT116-unstranded 0.50 81061 GGTCCTGGCCAGGCAGGCCAGCCAGGAGCTGGGACGATCCTTGCAGGAACCTCAGGATTACAGCAGGTGCAGATGGCAGGAGCTCCAAGCCAGCAGCAGCCAATGCTCAGTGGGGTACAAATGGCTCAGGCAGGTCAACCAGGGAAAATGCCAAGTGGAATAAAAACCAACATCAAGTCGGCTTCCATGCATCCCTACCAGC|GAGTCCTTAGCCAGGATGGAGGCTGTTGTGAACTTGTACCAAGAGGTGATGAAGCACGCAGATCCCCGGATCCAGGGCTACCCTCTGATGGGGTCCCCCTTGCTAATGACCTCCATTCTCCTGACCTACGTGTACTTCGTTCTCTCACTTGGGCCTCGCATCATGGCTAATCGGAAGCCCTTCCAG 20 0.797277923206141 0.509057825809615 0.2282707448492121 Y Y 3.53296011761759 3.7308075910906897 3.53296011761759 0 0.994637476849932 0.0 Y 0.9839124305497968 N Y 3676 4784 ENSG00000159479 ENSG00000066322 + - 1 1 43855479 43833697 coding intron MED8 ELOVL1 43849588 43829068 - - 0.0 43850717 43831294 - + N - - N SA467 1 0.0 1.0 1 0 1 N Y 0.0 0.0 11 1.4359439712335 1.2155763320838102 1.4359439712335 1.2155763320838102 4 - - 0.9776657497761702 HCT116-unstranded CGHSA0334 0.50 162003 GAGCAGCAGTACTTCCAGAGGACCTTGGCAGGAACTGTGCCCGGCTGCTGCTGGAGGAAATCTACAGGGGTGGATGCGTAGACTCGACCAACCAAAGCCTGGCGCTACTACTCATGACCCTTGGACAGCAGGATGTTTCCAAAGTCCTGCTAGGCCCTCTCTCTCCCTACAC|ATTCAAGAAGAACCTTAATCAGGGGAAATACAAAGAAAACCATGTCTAGATACATCATAGTCAAACTTATGAAAATGAAAAATAAAGAAAAAATATTGAAAGCATCCAGAGGAAAATAACGCATGACATATAAGCAAAA 4 0.437412254211159 0.969296623749298 0.40286998268772295 Y Y 3.27763636413971 3.1467798757356 3.1467798757356 3 0.0 0.010376314333149 Y 0.010376314333149 N N 2467 352 ENSG00000120158 ENSG00000243754 + - 9 9 4861064 4885917 coding downstream RCL1 RP11-125K10.4 4792869 4860454 + + 0.0 4849550 4892405 + - N - - N SA467 1 1.0 1.0 1 0 2 N Y 0.0 1.0 6 0.924122357724532 0.668211550970046 0.924122357724532 0.668211550970046 4 - - 0.982389408221386 HCT116-unstranded 0.50 118563 TCGCCTGCCATATTTGCTAGTTGGTGACAGTGTTGTGCTGAAGCAGGATTCCATCTACTATGAACATTTTTACAATGAGCTGCAGCCCTGGAAACACTACATTCCAGTTAAGAGCAACCTGAGCGATCTGCTAGAAAAACTTAAATGGGCGAAAGATCACGATGAAGAGG|TTAAATTAAAAATACCTTTTGGAAATAAATTACTAGATGCTGTTTGTTTGGTACCTAACAAGAGCTTAACATATGGAATAATTCTTACACATGGAGCATCAGGAGATATGAATCTTCCTCATTTGATGTCACTGGCATCCCAT 11 0.968610682838596 0.844847799733012 0.930109966556621 Y Y 3.2776762169330604 2.9763994049953 2.9763994049953 2 0.0 0.0 Y 0.0 N Y 321 855 ENSG00000134901 ENSG00000151287 + - 13 13 103451357 103426161 coding coding KDELC1 TEX30 103436631 103418340 - - 0.0 103441362 103421891 - + N - - N SA467 2 0.0 1.125 1 1 1 Y Y 0.0 0.0 8 0.909905090682616 1.0165345934969798 1.0165345934969798 0.909905090682616 4 - - 0.9494164370986968 HCT116-unstranded 0.50 22941 TTTCAGAAGATTGTGGTTCTCTTTTATAAAGCTGATGTTCTGAGCGAAGAAGCAATACTGAAATGGTATAAGGAAGCACATGTTGCTAAAGGCAAAAGTGTTTTTCTTGACCAGATGAAGAAATTTGTTGAGTGGTTACAAAATGCAGAAGAAG|TTGGTTAGTCTGCTGCTAATTGGAATTGCTGCGTGGGGCATTGGCTTCGGGCTGATTTCCAGTCTCCGAGTGGTCGGCGTGGTCATTGCAGTGGGCATCTTCTTGTTCCTGATTGCTTTAGTGGGTCTGATTGGAGCTGTAAAACATCATCAGGTGTTGCTATT 17 0.7678250686366039 0.369320171216647 0.651527360667748 Y Y 3.1710543832029 3.4571608175836404 3.1710543832029 0 0.0 0.0 Y 0.0 N Y 11654 1765 ENSG00000136261 ENSG00000106537 + - 7 7 16746148 16824161 coding coding BZW2 TSPAN13 16685756 16793160 + + 0.0 16744294 16815836 + - N - - N SA467 1 0.0 1.0 1 0 2 N Y 0.0 0.0 16 1.0165345934969798 1.08762092870656 1.08762092870656 1.0165345934969798 4 - - 0.982255279212956 HCT116-unstranded 0.50 22592 ACCAGGAAGGAACTGCAGAAGGAGCTCCAGGAGCGTCTTTCTCAGGAATGCCCGATCAAGGAGGTGGTGCTTTATGTCAAAGAAGAAATGAAGAGGAATGATCTTCCAGAAACAGCAGTGATTGGTCTTCTGTGGACATGTATAATGAACGCTGTTGAGTGGAACAAGAAGGAAGAACTTGTTGCAGAGCAGGCTCTGAAGCACCTGAAG|TTGGTTAGTCTGCTGCTAATTGGAATTGCTGCGTGGGGCATTGGCTTCGGGCTGATTTCCAGTCTCCGAGTGGTCGGCGTGGTCATTGCAGTGGGCATCTTCTTGTTCCTGATTGCTTTAGTGGGTCTGATTGGAGCTGTAAAACATCATCAGGTGTTGCTATTTTTTG 25 1.0 0.491073666345596 0.6127139483854499 Y Y 3.4937534244795 3.4571608175836404 3.4571608175836404 0 0.0 0.0 Y 0.0 N Y 11654 1765 ENSG00000136261 ENSG00000106537 + - 7 7 16746148 16824161 coding coding BZW2 TSPAN13 16685756 16793160 + + 0.0 16736686 16815836 + - N - 0.126020402469129 N SA467 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 43 1.45726987179638 1.22268496560476 1.45726987179638 1.22268496560476 4 - 2.90697674418605 0.988904998808694 HCT116-unstranded 0.50 248512 TGGGGAAGGATCGCAGGCGAGATTACGAGGCGAGGCTCGCGCGCCCGCCCCCGCCCTGGCCCCCAGTGCCCACCCGGTCGGCCCGGCACAGCCATGATCAAGGCGATCCTAATCTTCAACAACCACGGGAAGCCGCGGCTCTCCAAGTTCTACCAGCCCTAC|TGCCTCCTGATGCTTGCAATCTCATTCCCAATTCACCAGCGTGCGTGAATGCAGACTCCAGATCCAGCGCAGACGCCAAGAATTCGCTCAGGGGCACCAGCTAAATAGCAAACAGATGCCATGTCAAACATGTGAAAGCCTCAGCGACTAGGGTACCGC 8 1.0 0.96389223931314 0.269435144427436 Y Y 3.5429693362217702 3.35566963758278 3.35566963758278 0 0.0 0.0 Y 0.0 N N 13907 645 ENSG00000177879 ENSG00000172901 + - 5 5 115249778 115394680 coding upstream AP3S1 LVRN 115177178 115298151 + + 0.0 115177803 115297135 + - N - - N SA467 2 0.0 1.4 1 2 2 N Y 0.0 0.0 5 0.831710121952078 1.08051229518561 1.08051229518561 0.831710121952078 4 - - 0.954575583458702 HCT116-unstranded 0.50 1512 GCCATGATCTCCTCTGATACCTCCTACCTGTCCTCTAGAGGAAGAATGATTAAATGGTTCTGGGATTCAGCTGAGGAGGGCTACAGGACCTACCACATGGATGAGTATGATGAGGACAAGAACCCCAGTG|AGTGTGAGGAAGAGGCTGTCTGTGTCATTATGTGTGCGTCGGTCAAGTATAATATCCGGGGTCCTGCCCTCATCCCAAGAATGAAGACCAAGCACCGAATCTACTATATCACCCTCTTCTCCATTGTCCTCCTGGGCCTCATTGCCACTGGCATGTTTCAGTTTTGGC 4 0.5849012219483161 0.616824727126448 0.4188106935014871 Y N 3.30694823938047 3.40053619311028 3.30694823938047 1 0.00334448160535095 0.0 Y 0.00334448160535095 N Y 113 6233 ENSG00000110455 ENSG00000151348 + - 11 11 44105772 44266979 coding coding ACCS EXT2 44087475 44117099 + + 0.00334448160535095 44089465 44129233 + - N - - N SA467 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 7 1.0307518605389 0.9596655253293208 1.0307518605389 0.9596655253293208 4 - - 0.9561112803899507 HCT116-unstranded 0.50 207260 CGGCGCGGCGGCGCGGGAGTTGGTTCTAAAGAGTGGTGAGTCAGAAGAGACGTCAGGCAGCAAGCGACTTGGGCCATGGCCTCTGACCTAGACTTCTCACCTCCGGAGGTGCCCGAGCCCACTTTCCTGGAGAACCTGCTACGGTACGGACTCTTCCTGGGAGCCATCTTCCAGCTCATCTGTGTGCTGGCCATCATCGTACCCATTCCCAAGTCCCACGAGGC|GAACAGAGAACAGAAGCTCAGAGAAGTGAAGCAACTTGCCCAGCTATGAGAGACAGAGCCAGGATTTGAAACCAGATGAGGACGCTGAGGCCCAGAGAGGGAAAGCCACTTGCCTAGGGACACACAGCGGGGAGAGGTGGAGCAGGGCCTCTATTTCGAGACCCCTGACTCCACACCTGGTGTTTGTGCCAAGACCCC 32 0.701280533398277 0.7425577932715469 0.58025731703639 Y Y 3.61936062564813 3.21691415570694 3.21691415570694 0 0.0 0.00236406619385343 Y 0.00236406619385343 N Y 3148 4950 ENSG00000101363 ENSG00000197122 + - 20 20 35945663 36034453 coding utr5p MANBAL SRC 35918041 35973088 + + 0.0 35929816 35993607 + - N - - N SA467 2 0.624365482233503 1.73684210526316 1 14 2 N Y 0.00881057268722467 0.624365482233503 19 1.61365980925745 1.40040080362871 1.61365980925745 1.40040080362871 4 - - 0.9393529707959928 HCT116-unstranded 0.50 176063 CCAGAGCAAAGAAGAAATATGTGACAAGAGTATGTGGCCTTGCAACTTTTGAAATTGATCTTAAAGAAGCACAAAGATTTTTTGCTCAAAAATTCTCCTGTGGTGCCTCAGTAACAGGGGAGGATGAAATTATCATTCAGGGAGATTTTACAGATGACATAATTGATGTCATTCAGGAAAAATGGCCAGAG|AACATCGGGTCAGAAGTTGAGATTTCCACTATCGAGAAACAACGGAAGGAGCTGCAGTTGCTCATTGGAGAATTAAAAGATCGAGATAAAGAGCTCAATGACATGGTTGCAGTGCACCAGCAACAGCTTCTTTCATGGGAAGAGGATCGGCAGAAAGTGTTGACACTGGAAGAACGTTGCAGCAAATTAGA 18 1.0 0.563071350039525 0.5991877812656761 Y Y 3.4278353619737403 3.52936639476796 3.4278353619737403 0 0.0 0.0 Y 0.0 N Y 2551 570 ENSG00000139726 ENSG00000130783 + - 12 12 123255611 123312075 coding coding DENR CCDC62 123237321 123258874 + + 0.0 123253468 123262038 + - N - - N SA467 2 0.0 1.07142857142857 1 1 2 Y Y 0.0 0.0 14 1.49281303940117 1.37907490306584 1.49281303940117 1.37907490306584 4 - - 0.988904998808694 HCT116-unstranded 0.50 241237 CTGGAGCTGTCCTCTGCACACCAGGGGTCCCCCAGAGTCACCCTGACAAGAGTCCTTCCCGCCCTGGGGAACTCCTGCACAGACCATGCCAGGCGTGATGGTTCTAGGATAGGCCTTCTGGCACACCTCATCCGGGGAGATGTTGATGTTCACGCATTGCAGAGAGGCGGGGTACCTGG|CTGTCACGATGTGCGTGGCTCCCACGCGGCGCGCCCCTTCCTCCAGCGCCCGGCGCCGCAGCACTCCACAGAAGGTGCAGCAGGAGCGGCTGCGGCCGGAGCCGGCTGTGCTGCGGGCCACGGCGTCCATCGTCCA 6 0.7354826953222309 0.3939165706024509 0.548728984843117 Y Y 3.69106234172268 3.37232774565629 3.37232774565629 0 0.0 0.0 Y 0.0 N Y 96 1892 ENSG00000129437 ENSG00000142544 - + 19 19 51587502 51611647 coding coding KLK14 CTU1 51580574 51600863 - - 0.0 51582208 51607319 + - N - 0.415328565149521 N SA467 1 0.0 1.0 1 0 1 N Y 0.0 0.0 6 0.867253289556868 0.8530360225149519 0.867253289556868 0.8530360225149519 4 - 66.8333333333333 0.975013608996985 HCT116-unstranded 0.50 209357 ATGAATCCTGTGGAGCATCCTTTTGGAGGTGGCAACCACCAGCACATCGGCAAGCCCTCCACCATCCGCAGAGATGCCCCTGCTGGCCGCAAAGTGGGTCTCATTGCTGCCCGCCGGACTGGACGTCTCCGGGGAACCAAGACTGTGCAGGAGAAAGAGAACTAGTGCTGAGGGCCTCAATAAAG|CCAAATAGTTGCATCACATGTATCTAATCCGAGAGTCTCATGCTTCTGGTAGCTCCTCAGTGACCAGCTCCTGCTCACTGCCCTCAGAAAGCCCAACCCTCAGGCAATGGCGGCCTTGTTCCTGTCTGCCCCACCCCAGGCCGAGGTGACCTTCGAGGACGTGGCTGTGTACCTCTCCCGGGAGGAATGGGGCCGCCTGGGCCCTGCTCAGAGGGGCCTCTACAGGG 17 0.9381934344618672 0.479647738696574 0.73900325536957 Y Y 3.35253057547976 3.63465898428114 3.35253057547976 2 0.0 0.0024213075060532893 Y 0.0024213075060532893 N Y 141692 801 ENSG00000161016 ENSG00000196378 + - 8 8 146017972 146012730 utr3p utr5p RPL8 ZNF34 146015150 145997611 - - 0.0 146015170 146005665 - + N - - N SA467 4 0.0 1.95 1 13 1 Y Y 0.0 0.0 20 1.3293144684191298 1.60655117573649 1.60655117573649 1.3293144684191298 4 - - 0.947878958222847 HCT116-unstranded 0.50 49203 ATAAAACTGTCTCTTTTGTATTTCCCCACCCAGAAAAACAGCCTTGACATATGCTGTTGTGTCCAAAATTGGTGGATTCCTGACTTCACTGACCTCAAGAAGGAAGCCACAGACCCTCACG|CTGTGAAGCCAGCCAAGCCCTGCCAGCTTCCCTAGCTCTGGGGGAGGAGGAGGAGGCCTCTTGCTCAGGGGAGCTGTCACCAGCCTGCAAGCCCACTGTCCTAGCCACACTGTGAAACTGGAGGTGGCACTTCCCACAGCAGCTTCAGCGGAACCCAGGGACGCCACCAGAGGCATGAAGTGTGTGAAACTCCGGCC 24 1.0 0.8440302722481009 0.6297477901489621 N Y 3.38080938095063 3.1940041958516003 3.1940041958516003 0 0.0 0.0 Y 0.0 N N 56 7309 ENSG00000070526 ENSG00000182534 - + 17 17 74639920 74707098 downstream intron ST6GALNAC1 MXRA7 74620843 74668633 - - 0.0 74610087 74677857 + - N - 1.91657746438446 N SA467 1 0.6764705882352939 1.0 1 0 1 N N 0.6764705882352939 0.0 16 0.7250806191377092 1.0165345934969798 1.0165345934969798 0.7250806191377092 4 - 67.3125 0.9646316284573272 HCT116-unstranded 0.50 229748 TCATGAAGTCCATCTATGACATGATGGGCAAGTACACGTACCCTGCACTCCGGGAGGAGGCCCCAAGGGAACACGTGGAGAGCTTCTTCCAGAAGATGGACAGAAACAAGGATGGTGTGGTGACCATTGAGGAATTCATTGAGTCTTGTCAAA|AGGGCTCCGGGCCGGTGCCCCAACGGACAGAGGTCGAGGAGGACCCGCAGAGGTGGCAGCGGCCGGGGGCAGGAGGATGGTGCAGAAGGAGAGTCAAGCGACGTTGGAGGAGCGGGAGAGCGAGCTCAGCTCCAACCCTGCCGCCTCTGCGGGGGCATCGCTGGAGCCGCCGGCAGCTCCGGCACCCGGAG 4 0.91144687524704 0.5899930827213571 0.31141430876875 Y Y 3.45400817511148 3.33358506083463 3.33358506083463 0 0.99348299706356 0.0 Y 0.0 N Y 196 7109 ENSG00000120049 ENSG00000198408 + - 10 10 103603677 103578696 coding utr5p KCNIP2 MGEA5 103585731 103544200 - - 0.0 103587446 103577853 - + N - - N SA467 1 0.0 1.0 1 0 1 N Y 0.0 0.0 5 0.966774158850279 1.13027272983231 1.13027272983231 0.966774158850279 4 - - 0.9724384239126 HCT116-unstranded 0.50 241494 AGCATGGGCTCCCTGCTTCTCGCCGCCGGCACCCCAGGCATGCGCCACTCGCTCCCCAACTCCCGTATCATGATCCACCAGCCCTCAGGAGGCGCCCGGGGCCAAGCCACAGACATTGCCATCCAGGCAGAGGAGATCATGAAGCTCAAGAAGCAGCTCTATAACATCTACGCCAAGCACACCAAACAGAGCCTGCAGGTGAT|CGGCCATCCACGGCTTCCGAGAGACAGAGAAGTCGCGCTGGTCAGAAGCCAGCCGGGCCATCCTGCAGCGCGTGCAGGCGGCCGCCTTTGGCCCCGGCCAGACCCTGCTCTCCTCCGTGCACGTGCTGGACCTGGAAGCCCGCGGCTACATCAAGCCCCACGTGGAC 3 0.775657833432391 0.822791736814037 0.808355680936107 Y Y 3.5597249201477403 3.66761801553402 3.5597249201477403 0 0.0 0.0 Y 0.0 N Y 6378 956 ENSG00000125656 ENSG00000125652 + - 19 19 6368915 6375261 coding coding CLPP ALKBH7 6361463 6372444 + + 0.0 6366374 6374214 + - N - - N SA467 1 0.0 1.0 1 0 2 N Y 0.0 0.0 7 1.12316409631135 1.19425043152093 1.19425043152093 1.12316409631135 4 - - 0.961920784721638 HCT116-unstranded 0.50 207227 GCTCAAATTCCGAGGTCCCTTCACCGATGTTGTCACCACCAACCTAAAGCTTGGCAACCCGACAGACCGAAATGTGTGTTTTAAGGTGAAGACTACAGCACCACGTAGGTACTGTGTGAGGCCCAACAGCGGAATCATCGATGCAGGGGCCTCAATTAATGTATCT|GATGTCTTGAACAAGTCAGCAAAGAAAAACAGTTCCGCCTTTGGAATGTATGAAAATGAAGACCGTTGCAGGAGGTCTTGAGCCACAGAGCTGGCTCCAGAGGCATTGGGAGGAGAAACGCGGCAGGCCTGGCTCACTCATTATATTTCAAGATCTATCCCAGC 6 1.0 0.711804359754174 0.25032122296637604 N Y 3.6684832514345698 3.49744043328497 3.49744043328497 6 0.993920860658758 0.00302114803625386 Y 0.0 N Y 4508 67 ENSG00000124164 ENSG00000231290 + - 20 20 57026157 57194944 coding intron VAPB APCDD1L-AS1 56964178 57090435 + + 0.0 56993419 57193796 + - N - 0.120522064871205 N SA467 1 0.0 1.0 1 0 1 N N 0.0 0.0 10 1.13027272983231 1.07340366166465 1.13027272983231 1.07340366166465 4 - 0.3 0.942842825930325 HCT116-unstranded 0.50 380 GTCCTCGGGGGCAAGTTCACCACACTGGAAGGGCTGCTGAAAGACATCCGGGAACTGGTGACCAAAAATCCTTTCACACTGGGCGACAGTTCCAATCCTGGACAGACGGAGAGACTACAGGAGTTTAGCCAGAAGATGGACCAGATCATCGAAGGTAACATGAAGGCCCACTTTATTATGGATGATCCAGCAGGAAACAGTTACTTGCA|GAATGCGGATTGTGGATGATGATGTGAGCTGGACAGCTATCTCCACAACCAAACTAGAAAAGGAGGAAGAGGAAGATGATGGAGATTTGCCTGTGGTGGCAGAGTTTGTGGATGAGCGGCCAGAAGAGGTAAAGCAGATGGAGGCCTTTCGTTCCAGTGCCAAATGGAAGCTTCTGGGAGGCCACAACGAAGACC 8 0.7616893820497371 0.461970610253661 0.451092410337294 N Y 3.63552422018169 3.3707603095530896 3.3707603095530896 0 0.0 0.0 Y 0.0 N Y 4056 1129 ENSG00000109917 ENSG00000137656 + - 11 11 116658766 116643704 coding coding ZNF259 BUD13 116648436 116618886 - - 0.0 116650488 116640938 - + N - - N SA467 2 0.0 1.14285714285714 1 1 1 Y N 0.0 0.0 7 1.1658158974371 1.24401086616764 1.24401086616764 1.1658158974371 4 - - 0.979090623029825 HCT116-unstranded 0.50 162443 CGGGGGTGGGGAAAGCGCATTTGTAACGCGGGCGACAACGTGCCCGAAATCCCCGGACGGTGGGTCTGCATCGAGACCCCGAGCTCTGGAGCTGGAAAAACCCGGCTGAGGCTTTACAGTTCTCTATACTCTCCCAAGAGCCACAGAAAATGAACACATT|TCAGGAAGGAGGGAGCCCCAGGAACAGGAGTCCCACCGAAGAACTGCTCTCTGACAGAACAGAGACCTCCTCACCAGGGCTTCCAAACAGATGCAGAAGAACCCAGAAAGGAGCAGGTCTTGATTTGCCCAACCAGCGGCACTTCTTCATCCCCTTGCCCAGAGAGCACCAGACTTGGTGATGTCGCC 3 1.0 0.38953796394103496 0.764973498526216 Y Y 3.4278353619737403 3.04483826778745 3.04483826778745 0 0.0 0.0 Y 0.0 N Y 139 896 ENSG00000196597 ENSG00000081386 + - 9 9 99637905 99540411 coding utr5p ZNF782 ZNF510 99578754 99518147 - - 0.0 99614229 99538527 - + N - - N SA467 1 0.19047619047619 1.0 1 0 2 N Y 0.19047619047619 0.0 7 1.19425043152093 1.14448999687423 1.19425043152093 1.14448999687423 4 - - 0.9744470344016308 HCT116-unstranded 0.50 23106 AGGCGGTGCCGGCACTCCACAGGTACAGGCTGCCCAGCTCCCAGGCTCTCTGTTAACCAGCTTATGTCCAGCAGAGCTGGGGGGGTGCAACCCGGGGGAGCAGCTGCCATCCTGCGCTCCTGCCAGCTGACGGCCTCCTCTGCTGAGGTCTCTTCCATCACAACATGTGTCGCTTCGGAG|CCCAGTGCTGCTGGGCCCGGTTCTCCAGGAAGGGTCTCATTTGGATGAGGCGGGTGGCATAAATGTGGGCATACTGCCGGCTAAAGCTGCGCTCTCCTAGCCGGAAGGGTTGTGAGGAGTTGGTGTAGGTTGCCACTGGCACCCGGGCAAAGGT 2 1.0 0.7811188845366658 0.650862494076165 N Y 3.74015446228557 3.39640391403071 3.39640391403071 0 0.0 0.0 Y 0.0 N Y 975 17691 ENSG00000122678 ENSG00000106628 - + 7 7 44122139 44163957 coding coding POLM POLD2 44111846 44154286 - - 0.0 44120515 44161433 + - N - 2.80906512514518 N SA467 1 0.0 1.0 1 0 1 N N 0.0 0.0 5 1.13027272983231 1.1160554627904 1.13027272983231 1.1160554627904 4 - 525.6 0.978248373315081 HCT116-unstranded 0.50 176070 TCAGAGCTGGATGACCGAGCTGATGCCTTGCAGGCAGGAGCATCACAATTTGAGAGCAGTGCTGCCAAGCTAAAGAGGAAGTATTGGTGGAAAAACTGCAAGATGATGATCATGCTGGGAGCCATCTGTGCCATCATCGTGGTAGTTATTGTAA|AGTCTTGCTTTGTCGCCCAGGTTGGAGTGCAGTGGCACGATCTCGGCTCAGTGCAACCTCCGCCTCCTGAGTTCAAGTGATTCTCCTGCCTCAGCCTCCCTAGTAGCTGGGATTACAGGACAAGGAGAGGGACAAATTCCTTCTTGGCATCCTTATGGCCCTGTGACCTGCTAATGAA 18 0.8083318567038951 0.514405970190679 0.510022184202876 Y Y 3.6759318169590096 3.4378445805779303 3.4378445805779303 0 0.9935259935259928 0.0 Y 0.0 N Y 273 112 ENSG00000139190 ENSG00000215039 + - 12 12 6580153 6560733 coding intron VAMP1 CD27-AS1 6571403 6548167 - - 0.0 6574056 6557923 - + N - - N SA467 32 0.659090909090909 9.58333333333333 1 5 2 N Y 0.0 0.659090909090909 12 1.0947295622275202 1.2511194996886 1.2511194996886 1.0947295622275202 4 - - 0.943600173478019 HCT116-unstranded 0.50 176084 CAGAAGCTGTCAGAGCTGGATGACCGAGCTGATGCCTTGCAGGCAGGAGCATCACAATTTGAGAGCAGTGCTGCCAAGCTAAAGAGGAAGTATTGGTGGAAAAACTGCAAGATGATGATCATGCTGGGAGCCATCTGTGCCATCATCGTGGTAGTTATTGTAA|GTAGACCCAGTGTAATCACAAGCATCCTTGTAAGTGGCAAAGAGGCAGAGGAGACAGCGCCAGAGAGGCAGCTGCATGAGAAGGATCAAGATGTTGCTGACTTTGAAGTTGGAAGAAGAAGGCCATGAGCCTCAGTATGTGGGCGGCTTCTAGAAGCTGGAAGGGGCAAGGAGATGGATTTGACCCTTCAGCCTCCAGGGGCAGCTG 7 1.0 0.409442108203476 0.81935996174015 Y Y 3.6759318169590096 3.64400585547602 3.64400585547602 1 0.993881566980305 0.0 Y 0.0 N Y 273 112 ENSG00000139190 ENSG00000215039 + - 12 12 6580153 6560733 coding intron VAMP1 CD27-AS1 6571403 6548167 - - 0.0 6574056 6548842 - + N - - N SA467 1 1.0 1.0 1 0 2 N Y 0.0 1.0 6 1.17292453095806 1.27955403377243 1.27955403377243 1.17292453095806 4 - - 0.978744902579775 HCT116-unstranded 0.50 142036 GCCTTCAAGACGCACTGAGCAGGGCTCGGGAGCGAAGGCTGCTAGAGGGCTATGAGATCTATGTGACCCCTGGAGTCCAGCCACCACCACCTCAGATGGGAGAGATTATTAGCTGCTGTGGAGGCACATACCTACCCAGCATGCCTCGGTCCTATA|AGATGGGAAAACTAGACGAGCTGAGATTCAACCCACGTGAGCGGCTGCAGAGCCGCTACCCTTAACAGCTCTCTCTCGGGATTCTAACATTCCCTTCTGTGACGGAGAGACAGCAGGCCGGGACACGCATCCCAGGACGGATCCACAGCTGGATGGGGAAGGCTGCGCCAGGCGGGCCGGAAGC 6 0.607611697963869 0.3939165706024509 0.323047634859354 N Y 3.6491271616355 3.5157236005207904 3.5157236005207904 0 0.9936085419956392 0.0 Y 0.27137378750282 N Y 7555 1183 ENSG00000137337 ENSG00000137404 + - 6 6 30685666 30659197 coding intron MDC1 NRM 30667584 30655824 - - 0.0 30670330 30659058 - + N - 90.8931104356636 N SA467 1 0.0 1.0 1 0 1 N N 0.0 0.0 6 0.938339624766447 0.8956878236407 0.938339624766447 0.8956878236407 4 - 0 0.929378773684086 HCT116-unstranded 0.50 201857 ACCCCACATGGAACCAAAGGCCTCCTGTCCAGCTGCTGCACCCTTGATGGAGAGAAAATTCCATGTTCTTGTGGGTGTCACGGGGAGTGTCGCAGCCCTGAAGTTGCCTCTTCTGGTGTCAAAGCTTTTGGACATTCCTGG|GGTCAGAAGTTGAGTAGCAGGGGCCTAGGAGGGCTCGAAGCCTTCACAGCGATGGCAGAGAAGCGACCCCTGAGAACCCTGGGGCCTGTGATGTATGGCAAGCTGCCCCGCTTAGAGACAGACTCCGGGCTCGAGCACAGCCTGCCCCACTCTGTTGGTAACCAGGATCCCTGCACCTACAAGGGGTCCTACTTCTCCTGCCCCATGGCAGGT 14 0.7249185454588171 0.9154989239314928 0.6687463690081751 N Y 3.46720988898117 3.39590940049075 3.39590940049075 0 0.0 0.0 Y 0.0 N Y 320 11688 ENSG00000138621 ENSG00000167173 + - 15 15 75409803 75504510 coding intron PPCDC C15orf39 75315896 75487984 + + 0.0 75320794 75498340 + - N 2.67985705258622 0.12017823693874 N SA467 1 0.0 1.0 1 0 1 N N 0.0 0.0 6 1.00231732645507 1.27955403377243 1.27955403377243 1.00231732645507 4 8 74.6666666666667 0.96796797632003 HCT116-unstranded 0.50 142741 GTTTTTGACTAAAGGCCAGAATGCATTGGTAGAGCTACAGACACAAAGACCAATAGCTCTTGAGCTATATAAAGACTTTAAAGAGCTGGGGAGGTTCATGCTACGTTACGGTGGTTCTACAATAGCTGCTGGTGTTGTCACT|GAGATCGAAGCCGCGGTCAAGGCCGCCAGAGAAGCCTTTCCCAGCTGGTCATCCCGCAGCCCCCAGGAGCGCTCACGGGTCCTGAACCAGGTGGCGGATTTGCTGGAGCAGTCCCTGGAGGAGTTTGCCCAGGCCGAGTCTAAAGACCAAGGGAAAACCTTAGCACTGGCAAG 5 0.580769597391993 0.8128568539944548 0.813889266979762 Y Y 3.60888739872753 3.4001654707496898 3.4001654707496898 1 0.992980032091282 0.0 Y 0.164623818862542 N Y 5625 257 ENSG00000112339 ENSG00000118514 + - 6 6 135424194 135271260 coding coding HBS1L ALDH8A1 135281516 135238528 - - 0.0 135287467 135265104 - + N - - N SA467 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 7 0.9596655253293208 1.19425043152093 1.19425043152093 0.9596655253293208 4 - - 0.925143311505453 HCT116-unstranded 0.50 50768 CATGTTAAATGAATATTAAAAGCATGGAGAGGAAACATGAGGAACAATGAATTTCAACATATGGCTTCAGAACATGAAGATGTTCTTGTATGGATTATAGTATCTAGTATTCAAAAATGCCTGCATCTCTTCTCTTATTTATT|GATCAACAAACAGTAATAATGACTGAATGTACAAGTCTTCAGTTTGTCAGCCCTTTTGCTTTTGAGGCAATGCAGAAGGTGGATGTTGTTTGCCTGGCATCTTTAAGTGATCCAGAATTAAGACTTCTTCTGCCCTGTTTGGTACGGATGGCACTTTGTGCACCTGCTGACCAGAGCCAAAGCTGGGCTCAGGATAAGAAACTCATCC 16 1.0 0.605800176032744 0.549812918104062 Y Y 3.17784060131804 3.4246428667082407 3.17784060131804 0 0.0 0.0 Y 0.0 N N 11025 2473 ENSG00000108510 ENSG00000108506 + - 17 17 60142643 60005377 utr3p coding MED13 INTS2 60019966 59942731 - - 0.0 60023381 60004023 - + N - 2.98586917456576 N SA467 1 0.0 1.0 1 0 1 N Y 0.0 0.0 16 0.9525568918083628 1.49281303940117 1.49281303940117 0.9525568918083628 4 - 4.9375 0.978966500754111 HCT116-unstranded 0.50 79816 AATTCATGTTAGGCTTGTTCTTGCGAATCCCCCAGAGACGAGCCACCTCTTCTGCCTGCAAAAGCTTAAACTGCCCATCATTAGAGGTCCAACAGATCATGTGCTTGTTCTGAGGCTTCTGCAGGAGCTGAAGAAGGAACTGCCACAGGGTGATAGCACTGTCCATAGCAATGAGC|TGCTTCTCCCGGTGGTAGAGGGAGGCCAGTGTGTAGGGCAGGATCTGCAGGGCTGAGAAGGTGAACCCGGTGAGGGCGGCTGAAGCTGTCACCACGGCCACACTGTGGGACAGGCATGTGGCACCGGCAGCCACAGG 1 1.0 0.26758790367020896 0.26319252194021 Y Y 3.61464054707278 3.35104284496326 3.35104284496326 0 0.0 0.0 Y 0.0 N Y 2889 693 ENSG00000158711 ENSG00000158715 - + 1 1 205601090 205649587 utr5p coding ELK4 SLC45A3 205577071 205626979 - - 0.0 205593019 205630989 + - N - 0.933175655344532 N SA467 1 0.0 1.0 1 0 1 N Y 0.0 0.0 5 0.9454482582874052 0.7250806191377092 0.9454482582874052 0.7250806191377092 4 - 9.8 0.9199101940923752 HCT116-unstranded 0.50 80636 TAGGACAACTGGAAAACACAGGCCCTCCCCCAGCTGACAAGGAAAAGATCACATCTCTTCCAACAGTGACAGTAACTCAGGAACAAGTTGATATGGGTTTAGAGTGTCCAGTATGCAAAGAAGATTACACAGTTGAAGAGGAAGTCCGGCAGTTACCTTGCAATCACTTCTTTCACAGCAGTTGTATTGTGCCGTGGCTAGAACTG|AAATGACCTCCACCTTCAACCCCCGAGAATGTAAACTGTCCAAGCAAGAAGGGCAAAACTATGGCTTCTTCCTGCGAATTGAGAAGGACACCGAGGGCCACCTGGTCCGGGTGGTTGAGAAGTGTAGCCCAGCAGAGAAGGCTGGCCTTCAAGATGGAGACAGAGTTCTTAGGATC 6 1.0 0.875798947959207 0.11038037684299196 N Y 3.71720464963688 3.39384326095097 3.39384326095097 0 0.0 0.0 Y 0.0 N Y 1000 144 ENSG00000121848 ENSG00000174827 + - 1 1 145690661 145764074 coding utr5p RNF115 PDZK1 145611036 145726918 + + 0.0 145687091 145747042 + - N - - N SA467 1 0.0 1.0 1 0 1 N N 0.0 0.0 11 1.3861835365867998 1.17292453095806 1.3861835365867998 1.17292453095806 4 - - 0.9659072577365808 HCT116-unstranded 0.50 229626 TGTTAATGATGCTAAACTGTTCAGAAAACAACAAAGAAGAGACAATTCCGGATGTGGATGTAGAAGAGGCAGTTCTGGGGCAGTATACTGAAGAACCTCTAAGTCAAGAGCCATCTGTAGATGCTGGTGTGGATTGTTCATCAATTGGCGGGGTTCCATTTTTCCAG|AGCTTGTCTCTGTCCTTGGAACACAGAAGAGCACATTGAATTCATCAGGCCATGGGATGAGAATGATGACGGTGGAGATGGCACAACACTGGAGCTGACCCACAGAGGGATCAATGATTCCCAAATAACCCTTCACTGATAGTTTCCAGGGGCAAGGCAC 4 0.985593081774439 0.441431233628954 0.61290880209926 N Y 3.2823030095525803 3.66951632120446 3.2823030095525803 2 0.0 0.00304878048780499 Y 0.00304878048780499 N N 3435 813 ENSG00000138160 ENSG00000152804 + - 10 10 94415150 94455403 coding upstream KIF11 HHEX 94353043 94447945 + + 0.0 94410274 94443354 + - N - - N SA467 1 0.0 1.0 1 0 1 N N 0.0 0.0 8 0.902796457161658 1.1658158974371 1.1658158974371 0.902796457161658 4 - - 0.9891222065106758 HCT116-unstranded 0.50 151434 CGGCCGCAGAACGTGGCCGAGAGGCCCGGGCGAGACTTCGGGACCGTGTCCTGAGCGCTCTCCATGCGCCCGGCGCGAGAGAATTTCAAGATTGTGGAGTTGGACTGAATGCTGCACAGTTCAAACAGCTGCTTATTTCGGCTGTGAAGGACCTGTTTGGGG|AGGAATATATTATTCGAGTGCAAAGAGGAATTTCTGTGGAAAACAGCTGGCAGATTGTTAGAAGATACAGTGACTTTGATTTGCTTAACAACAGCTTACAGATTGCAGGCCTAAGTCTACCTCTTCCTCCCAAAAAATTGATT 14 0.434761423501232 0.712991522616029 0.8938034223640309 Y Y 3.5351195431132 3.5016965035439 3.5016965035439 0 0.0 0.0 Y 0.0 N Y 1474 1312 ENSG00000163684 ENSG00000168297 + - 3 3 58305816 58411748 coding coding RPP14 PXK 58291974 58318607 + + 0.0 58296318 58351601 + - N - - N SA467 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 7 1.00231732645507 0.9881000594131528 1.00231732645507 0.9881000594131528 4 - - 0.910749585597564 HCT116-unstranded 0.50 22845 CCCAACAGGCCACCCTGGAGAAATGTGCCACGTGCTCCCAGCCCATCCTGGACCGGATCCTGCGGGCTATGGGGAAGGCCTACCACCCTGGCTGCTTCACCTGCGTGGTGTGTCACCGCGGCCTCGACGGCATCCCCTTCACAGTGGATGCTACGAGCCAGATCCACTGCATTGAGGACTTTCACAG|GCCCCCTCAGACCGTGCCATGGGTGACAGTGATGACGAGTACGATCGAAGGCGCAGGGACAAGTTCAGAAGAGAGCGCAGCGACTACGACCGTTCCCGCGAGAGAGATGAAAGACGTCGAGGGGACGATTG 5 0.703948372052935 0.876739117560492 0.479069096586405 Y Y 3.59528445727371 3.3536034980430003 3.3536034980430003 0 0.0 0.0 Y 0.0 N Y 6055 18535 ENSG00000087077 ENSG00000087087 + - 7 7 100471076 100486285 coding coding TRIP6 SRRT 100464760 100472733 + + 0.0 100469343 100473194 + - N 0.563368796305896 0.230463437770975 N SA467 1 0.0 1.0 1 0 1 N Y 0.0 0.0 6 0.845927388993994 0.8601446560359101 0.8601446560359101 0.845927388993994 4 235.833333333333 106.333333333333 0.961402518737551 HCT116-unstranded 0.50 1534 AAAGTGTGGGGAAGATCGAGCACTCCTTCTGGAGATCCTTTCACACCGAGCGGAAGACAGAACCAGCCACAGGTTTCATCGACGGTGACTTGATTGAGAGTTTCCTGGATATTAGCCGCCCCAAGATGCAGGAGGTGGTGGCAAACCTACAGTATGACGATGGCAGCGGTATGAAGCGAGAGGCCACTGCAGACGACCTCATCAAG|CCCTCTGCTCCTTCGGCTGTGGGAGTGGCATCTGCATCGCTCCCAATGTCTGCTCCTGCCAGGATGGAGAGCAAGGGGCCACCTGCCCAGAAACCCATGGACCATGTGGGGAGTACGGCTGTGACCTTACCTGCAACCATGGAGGCTGTCAGGAGGTGGCCCGAGTGTGCCCCGTGGGCTTCTCGATGACGGAGACA 18 0.8929169173825758 0.7681356768552421 0.651522436660531 Y Y 3.76017289949394 3.3452896966180097 3.3452896966180097 0 0.0 0.0 Y 0.0 N N 34655 875 ENSG00000167986 ENSG00000167992 + - 11 11 61110068 61062896 coding coding DDB1 VWCE 61066923 61025762 - - 0.0 61067638 61058825 - + N - - N SA467 1 0.0 1.0 1 0 1 N Y 0.0 0.0 18 1.47859577235925 1.40750943714967 1.47859577235925 1.40750943714967 4 - - 0.978248373315081 HCT116-unstranded 0.50 132557 ACCCTCTCCCCCGAACCCGCAGCCCGCGAGGCTCCTCTCCTGCTGCCCTCGTGGGTTCAGGAGCTGTGGGAGACGCGACGCAGGAGCTCCCAGGCAGGGATCCCCGTCCGTGCGCCCCGGAGCCCGCGCGCCCCAGAGCCTGCGCTGGAACCGGAGTCCCTGGACTTCAGCGGAGCTGGCCAG|GTGGTGCAAAGGATCAAGGCTGTGGAGGGGCAGACTCGGCTGCTGGTGGTGGACCAGGAGACAGATGAGGAGCTCCGCCGGCGGCAGCTGACCTGTACCGAGGAGATGGCCCAGCGAGGGCTCCCACCCGCCCACGACCCC 12 1.0 0.7465955803179001 0.34820350155652696 Y Y 3.5827145855897897 3.37548038812845 3.37548038812845 0 0.9929296235679208 0.0 Y 0.0 N Y 8207 1878 ENSG00000183971 ENSG00000065054 + - 16 16 2070756 2089027 coding coding NPW SLC9A3R2 2059927 2075357 + + 0.0 2070313 2079583 + - N - - N SA467 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 8 1.17292453095806 0.888579190119742 1.17292453095806 0.888579190119742 4 - - 0.9659072577365808 HCT116-unstranded 0.50 22838 AAATGTAAGTGCACTCAACCTTGCTCTCCGGTTCGTGATCAGCAGCCGAGAAATACACAACCTCTTGCACTTCATCTCTGGGCCGGGCTGAATTTTTCCCAAATACCACCAGACCATCCTTAGCACGTGGAGGGAAGGCAACAAAACAGTAACTTGGAGGAGCTGCAGCCATC|GTGGAGTGAAATAAGGAGCCGTCCTTTTCTAAGTAGCCTTCATAGTGGACCAACATCAAATCCCCTCCTTTGGTCTTGCGATGGCAGATGAATGGCTTCTGGAGAACTTCAATTTTCACTTCTGGTTCAGGGATCAAAGCCCCAATCAAAGAAGTGACGAACAGAGTCAA 11 0.9217013247779228 0.551316978210246 0.679677743663453 Y Y 3.58337693299909 3.57489529770476 3.57489529770476 1 0.9941347469220252 0.0 Y 0.0 N Y 12038 790 ENSG00000136193 ENSG00000106080 - + 7 7 30029905 30066300 coding coding SCRN1 FKBP14 29959719 30050203 - - 0.0 30008684 30065928 + - N - 0.384467065514315 N SA467 1 0.0 1.0 1 0 1 N Y 0.0 0.0 10 0.966774158850279 1.18003316447902 1.18003316447902 0.966774158850279 4 - 6.5 0.987404465748556 HCT116-unstranded 0.50 207452 GTCGAGGAAGTACTGGGGGCAGACCTTGTTGGAGGGCAAGATGCCCATGAAGGGGAAGAGGACGATGGGCAGCAGCGCCGTCACTGAGAGCGGCAGGGCCTCCGTGCACCAGTACACCGCCATGAGCAGGATGACAAACAAGCAGCGGCCTT|CCAGCGCGGCGACAGCGGAGGAGCGCCCGGGCCTCCTGCACCGTCCGCCGTCTGCCAAGCCGCGCCTCCAGCGCCGGGTGCCGGTAGCCCTTGGGGAAGCGGTGCTTGATCACCGCCGCGCGGCCCTGGAAGCGGCCACGGAACACGCGCGCCTCGGCACCCTGCTTCACCAGCTC 1 0.594599537712516 0.5874573548565429 0.704044015882476 Y Y 3.54400240599166 3.09077774587819 3.09077774587819 2 0.993441049432091 0.00959846424572075 Y 0.986882098864182 N Y 106 1386 ENSG00000158296 ENSG00000172315 - + 20 20 45304714 45318418 coding coding SLC13A3 TP53RK 45186463 45313004 - - 0.0 45242364 45317771 + - N 3.06187337743181 1.3582908422252 N SA467 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 12 1.08762092870656 0.9738827923712372 1.08762092870656 0.9738827923712372 4 0.333333333333333 10.5833333333333 0.946869339803654 HCT116-unstranded CGHSA0579 0.50 37923 CCTGCAAAGTGAGGTGGAGGGAGTTAAGAATATTATGACCCAGAATGTGGAGCGGATCCTGGCCCGGGGGGAAAACTTGGAACATCTCCGCAACAAGACAGAGGATCTGGAAGCCACA|GCAGGAATAGAGTTGGAGCGGTGCCAGCAGCAGGCGAACGAGGTGACGGAAATTATGCGTAACAACTTCGGCAAGGTCCTGGAGCGTGGTGTGAAGCTGGCCGAACTGCAGCAGCGTTCAGACCAACTCCTGGATATGGTGTGAGGC 7 0.0794592030569569 0.409442108203476 0.7024317995744039 Y Y 3.52567938596249 3.49268050191626 3.49268050191626 2 0.991557283038104 0.0 Y 0.240155473429336 N Y 1750 85 ENSG00000118640 ENSG00000168899 + - 2 2 85809154 85820535 coding coding VAMP8 VAMP5 85788685 85811531 + + 0.0 85806290 85818848 + - N - 0.0458032735049136 N SA467 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 6 0.753515153221541 0.966774158850279 0.966774158850279 0.753515153221541 4 - 0.166666666666667 0.9677226720382572 HCT116-unstranded CGHSA0565 0.50 50779 CTCAGAGGATTATATTCATCGAATTGGAAGAACTGCTCGCAGTACCAAAACAGGCACAGCATACACTTTCTTTACACCTAATAACATAAAGCAAGTGAGCGACCTTATCTCTGTGCTTCGTGAAGCTAATCAAGCAATTAATCCCAAGTTGCTTCAGTTGGTCGAAGACAGAGGTTCA|GGTGCCTTGGAACACTATGTTAATTGCCTGGATCTGGTAAACAAGAGGCTACCTTATGGCCTTGCTCAGATTGGAGTGTGTTTTCATCCTGTTTTTGACACTAAGCAGATACGAAATGGTGTTAAAAGTATTGGTGAGAAGACTGAAGCTTCGTT 11 0.876246122744643 0.61088225849611 0.428181848241287 Y Y 3.6852786881538906 3.66273010308932 3.66273010308932 0 0.0 0.00299401197604776 Y 0.0 N Y 59380 915 ENSG00000108654 ENSG00000256525 + - 17 17 62504317 62493154 coding coding DDX5 POLG2 62495734 62473902 - - 0.0 62496667 62489138 - + N - - N SA467 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 11 1.2582281332095502 0.924122357724532 1.2582281332095502 0.924122357724532 4 - - 0.986762768036495 HCT116-unstranded 0.50 63659 AGGGCACAGGGGTCACTCAGCATGTTTAGCCCTTCCAGGCCCAGTGGCTCCATGCGCAGCTCATCTTCTAGCCCAAGCCCTAGCTCCAATCCAGCTGCTGACACCTCAAAGCCAGGCACTCCGGCCAGGGCTGCTGCAATCTCCTTAGAGAAACCTGGAGAGGAGTCC|CCTGAGCCTTCATGGTTAGCTCCTGGCCGGCGCAGCACACAGATGGGCACCAGGCTGCAGAGGAGGGTGAGCACCAGCAGCAGCACCAGGGCCCCCAACTTCACCTCCAGCCCCACAGGCACTGGAGGCTCTGAAGCTACCGCCT 11 0.752464659445994 0.7311046370146559 0.444283061113463 Y Y 3.5959468046830203 3.70144228268745 3.5959468046830203 0 0.9931254118163848 0.00318471337579607 Y 0.00318471337579607 N Y 1366 2895 ENSG00000160741 ENSG00000143570 - + 1 1 153931101 153940188 coding intron CRTC2 SLC39A1 153920145 153931575 - - 0.0 153920805 153935005 + - N - 5.37014989430651 N SA468 2 0.0 1.08333333333333 1 1 1 Y Y 0.0 0.0 12 0.914164694453473 0.953625040976645 0.953625040976645 0.914164694453473 4 - 26.75 0.974528917836234 HCT116-unstranded CGHSA0331 1.0 187143 CCCACCTGCTGGCCGCCAGCATCCTGGCCGACCTGCGCGGCGGACCCGGAGCCGCCCCGGGGGGCGCCTCGCCCGCCTCCTCCTCCTCAGCCGCCTCGTCCCCGTCCTCGGGCCGCGCCCCCGGCGCCGCGCCCTCCGCCGCCGCCAAGAGCCACCGCTGTCCCTTCCCGGACTGCGCCAAAGCCTACTACAAGTCCTCGCACCTAAAGTCGCACCTGCGGACGCACA|CAGGGCTGGGTTACGACCCCTACAACCCTGAGCTGCCCAAGCCCCCCGCGCAGAGGGAGAATGGCACCCTGGGCCTGGGGGAGGAGCCGCGCCCGGATGTGCTGGAGTTGGAGCTGGTCAACCAGGCCATCGAGGCCGTGCGCAGTGAGGTGGAGCTGGAGCAGCGGCGCTACCGGGAGCTGCTGGAGACGACCCGTGAGCACCGCTCCGCCGAGGCCCCCGCCCTGGCGCC 26 0.80774154363952 0.5972750724593959 0.259292973627017 Y Y 3.5733677143949105 3.37023110089298 3.37023110089298 0 0.0 0.0021691973969632 Y 0.0 N Y 5307 3746 ENSG00000129911 ENSG00000079313 + - 19 19 1863567 1848452 coding intron KLF16 REXO1 1852399 1815248 - - 0.0 1863040 1828630 - + N - 6.49630629766658 N SA468 1 0.326086956521739 1.0 1 0 2 Y Y 0.326086956521739 0.0786026200873362 34 1.5126466167215702 1.50606989230105 1.5126466167215702 1.50606989230105 4 - 1.02941176470588 0.9701854737997858 HCT116-unstranded 1.0 187142 CGGAGCCGCCCCGGGGGGCGCCTCGCCCGCCTCCTCCTCCTCAGCCGCCTCGTCCCCGTCCTCGGGCCGCGCCCCCGGCGCCGCGCCCTCCGCCGCCGCCAAGAGCCACCGCTGTCCCTTCCCGGACTGCGCCAAAGCCTACTACAAGTCCTCGCACCTAAAGTCGCACCTGCGGACGCACACAG|TGAAGGCTGCACCAGACGCATCTGTACCTGCCCTGTGCGGTCTGTCTGTGGCACGGGTTCTGAGGATTCCGAGTCTGAAGGTGGTGGTGTTGAAGCTGCATGGGATGGTTGCGAAACTGCTCTGCAAGATCTCGGCCTGTCCATGGCCCCCTCAGTGACGGGCAAGGGAGATTTCACCCCATCTAGAGCCC 22 0.662921032425715 0.8092058773154379 0.508201867346948 Y Y 3.55401162459584 3.6272104187567 3.55401162459584 0 0.0 0.0 Y 0.0 N Y 5307 3746 ENSG00000129911 ENSG00000079313 + - 19 19 1863567 1848452 coding intron KLF16 REXO1 1852399 1815248 - - 0.0 1863040 1830865 - + N - 6.19549355664738 N SA468 1 0.409836065573771 1.0 1 0 2 N Y 0.409836065573771 0.108247422680412 26 1.20354056895673 1.27588453758255 1.27588453758255 1.20354056895673 4 - 2.30769230769231 0.98564693646182 HCT116-unstranded 1.0 186041 CCCAATCCTGGAGCTTGAAAATCTGCCGCAGAATGGCCGCCAGTGTTACAGCTGCAAGGGGAACAGCACCCATGGATGCTCCTCTGAAGAGACTTTCCTCATTGACTGCCGAGGCCCCATGAATCAATGTCTGGTAGCCACCGGCACTCAC|GGGGCAGGACAGGAAGTACAGACAGAGAACGTGACAGTGGCTGAGGGTGGGGTGGCTGAGATCACCTGCCGTCTGCACCAGTATGATGGGTCCATAGTTGTCATCCAGAACCCAGCCCGGCAGACCCTCTTCTTCAATGGCACCCGTGCCTTGAAGGATGAGCGTTTCCAGCTTGAGGAGTTCTCCC 5 1.0 0.629988396500075 0.23961217087059505 Y Y 3.71041843152174 3.13077476750157 3.13077476750157 0 0.0 0.0 Y 0.0 N Y 2778 1293 ENSG00000011422 ENSG00000105767 + - 19 19 44174502 44143991 coding coding PLAUR CADM4 44150271 44126522 - - 0.0 44156377 44131942 - + N - - N SA468 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 5 0.868127623509773 1.18381039569515 1.18381039569515 0.868127623509773 4 - - 0.978737475161508 HCT116-unstranded 1.0 179374 AGCTGTGATGTCCAAAATTCAGGTCTCTGAGCGGCCCCTGATGTTCCTGTTGGACACTCCTGGCGTGCTGGCTCCTCGGATTGAAAGTGTGGAGACAGGCCTGAAGCTGGCCCTGTGTGGAACGGTGCTGGACCACCTGGTCGGGGAGGAGACCATGGCTGACTACCTGCTGTACACCCTCAACAAACACCAGCGCTTTG|GGTGGACCAGGTGCTCTGAGGCTGGCGTACAGACACAGCACGTGCGACGGAGTGGTGTTGGTCCGACACCACGGGGCATGGGGATACGTGTGCAACCAGGAGTGGACGCTGGCAGAGGCCTCTGTCGTGTGCAGGCAGCTGGGCTGCGGCCCTGCCGTGGGC 8 1.0 0.8121016016873699 0.185693669857105 Y Y 3.3112577428018906 3.50376264308368 3.3112577428018906 0 0.0 0.0 Y 0.0027548209366392603 N Y 237 286 ENSG00000148824 ENSG00000214279 + - 10 10 135234811 135337062 coding utr5p MTG1 RP11-108K14.4 135207598 135267432 + + 0.0 135216277 135269741 + - N - 0.157405349441114 N SA468 1 0.0 1.0 1 0 1 N Y 0.0 0.0 8 1.26273108874149 1.02596900960246 1.26273108874149 1.02596900960246 4 - 0.125 0.97974705898709 HCT116-unstranded 1.0 148973 TTATAAAAGAGAGTCAGGAAAGTGGTGACAGGAGACGTGAGGATAGAAGCAGGAGGTTGATGAGGTGAGCCAAGCAGGCAGCCAGTCTCCAGAGGCTGAAGAAGTCAGGGAAGCGGATTCTGCCCTCAGAGCTCCCAGAGGCAGCCACCCTGCCAACAACACCTGGGCTTTAGCCTCCTGAGACTGATTTTGGACTTCTCATCTCCAGAATT|ATCTAGGAGAATACTAACCGTGAAGATGAAACAAGAATTGTCCATGTACCTTTTCCTGAGAAGCCACCAGCTGTGACTTTAAGCTCGCACTCTGATGTTCCCAGGATTTCTGTTCCTGCTTCATCGTCG 6 0.818821488603674 0.920753265778832 0.800741212440705 N Y 3.4320914322326805 3.52720696927234 3.4320914322326805 0 0.0 0.0 Y 0.0 N N 4150 2811 ENSG00000151748 ENSG00000100503 - + 14 14 51135049 51297839 upstream intron SAV1 NIN 51098776 51186481 - - 0.0 51145202 51210085 + - N - 0.596130261831995 N SA468 1 1.0 1.0 1 0 1 N N 1.0 0.0 5 0.434063811754887 0.690556064155501 0.690556064155501 0.434063811754887 4 - 13.8 0.9747288607903348 HCT116-unstranded 1.0 162834 GCAGGGCAGGTAAGGCAGAATCTCTACAACATCCACATTGCAAAAATTGCTGAAATTGCGGCAGATATACTTATAGGTCTTGTCTTCAGCAAACGGCATTGCTGCTCAGATTCTGGAGAGAGGGCTCTGGCCCCATGAAGGGTGGATGGACTGAGAGGAAACGAGACT|GGCCACAGCTAAAATCTGTTCCTTCCGGAGAAGCCTGTCCCTCTCGGCACCATGCGGCCGTGGGTCATCAGGTGACTTCTCAGCACCGAAGACGCAGGAGTACAGCACTCGGCAAAGGCCCGTGTCCTCAGTATTCGGGGCCCTCAAGGTGTGAATGAGGAAGGCGTGGACCATG 13 0.930126477609873 0.452838086723918 0.509724594157334 Y Y 3.22846030519079 3.76848670091893 3.22846030519079 6 0.99406492248062 0.0 Y 0.8278827519379841 N Y 9006 1347 ENSG00000088888 ENSG00000125843 - + 20 20 3849280 3805949 utr5p coding MAVS AP5S1 3827487 3801178 + + 0.0 3835205 3802940 - + N - 0.78953769105199 N SA468 1 0.0 1.0 1 0 1 N Y 0.0 0.0 10 1.03254573402299 1.13119660033092 1.13119660033092 1.03254573402299 4 - 23 0.9472929807167828 HCT116-unstranded 1.0 138018 ACCGTGTGCTTGACGCTGTCCGGCCTGAGCAAGCGGCAGCTAGGCCTGTGCCTGCGCAACCCCGACGTGACGGCGTCCGCGCTTCAGGGTCTGCACATCGCGGTCCACGAGTGTCAGCACCAGCTGCGCGACCAGCGCTGGAACTGCTCCGCGCTTGAGGGCGGCGGCCGCCTGCCGCACCACAGCGCCATCCTCAAGCGCGG|ATCAAGTCTTCCATACCAGGGACCAGGCCAAAACCAGACTGCCACTGCCCCTACTTGGGCCCCACTGTCCCCAGAAAGCAGCTGCTGTGATCATGGGCAATATCTTTGGAAACCTTCTCAAGAGCCTGATTGGGAAGAAGGAGATGCGCATCCTGATGGTGGGCCTGGATGCCGCAGGAAAGACCACCATCCTATACAAGCTGAAACTCGGGGAGATCGTCAC 10 0.573781371518914 0.3411627773770869 0.664304284900241 N Y 3.2044146420399 3.45976132345673 3.2044146420399 0 0.995085428179186 0.00234192037470726 Y 0.00234192037470726 N Y 517 10398 ENSG00000169884 ENSG00000134287 + - 12 12 49365546 49351334 coding utr5p WNT10B ARF3 49359123 49297286 - - 0.0 49363872 49334971 - + N - - N SA468 1 0.0 1.0 1 0 1 N N 0.0 0.0 9 1.22984746663885 1.4468793725162898 1.4468793725162898 1.22984746663885 4 - - 0.925259060187034 HCT116-unstranded 1.0 187513 GAAAGTTGAACTAATAAAGTTTGTACGAGTTCAGTGGAGGAGACCGCAAGTTGAGTGGAGGAGGCGGCGGTGGGGCCCCGGACCAGGTGCCTCCATGGCAGGCTCTGAAGAGCTGGGGCTCCGGGAAGACACGCTGAGGGTCCTAGCTGCCTTCCTTAGGCGTGGTGAGGCTGCCGGGTCTCCTGTTCCAACTCCACCTAG|GTGTCCTGTGGCCAGGCGGAAAGCAGTGAGAAGCCCAACGCTGAGGACATGACATCCAAAGATTACTACTTTGACTCCTACGCACACTTTGGCATCCACGAGGAGATGCTGAAGGACGAGGTGCGCACCCTCACTTACCGCAACTCCATGTTTCATAACCGGCACCTCTTCAAGGACAAGGTGGTGCTGGACGTCGGCTCGGG 12 0.919993803933392 0.980661376834176 0.16092728954332 Y Y 3.612079893993029 3.44040523365767 3.44040523365767 0 0.0 0.00246913580246899 Y 0.0 N Y 1444 24606 ENSG00000126453 ENSG00000126457 + - 19 19 50177172 50192286 coding coding BCL2L12 PRMT1 50168399 50179043 + + 0.0 50170056 50183744 + - N - - N SA468 2 0.0 1.3636363636363602 1 8 2 Y Y 0.0 0.0 22 1.30876815968519 1.381112128311 1.381112128311 1.30876815968519 4 - - 0.945230110234456 HCT116-unstranded 1.0 187514 CCGCCTGTCCTCCGACTCTTTCGCCCGCCTGGTGGAGCTGTTCTGTAGCCGGGATGACAGCTCTCGCCCAAGCCGAGCATGCCCCGGGCCCCCGCCTCCTTCCCCGGAGCCCCTGGCCCGCCTGGCCCTAGCCATGGAGCTGAGCCGGCGCGTGGCCGGGCTGGGGGGCACCCTGGCCGGACTCAGCGTGGAGCACGTGCACAGCTTCACGCCCTGGATCCAGGCCCACGGGGGCTG|GGTGTCCTGTGGCCAGGCGGAAAGCAGTGAGAAGCCCAACGCTGAGGACATGACATCCAAAGATTACTACTTTGACTCCTACGCACACTTTGGCATCCACGAGGAGATGCTGAAGGACGAGGTGCGCACCCTCACTTACCGCAACTCCATGTTTCATAACCGGCAC 9 0.9150907009568928 0.9058626609494927 0.153169192802718 Y Y 3.30128837699106 3.4084792721746804 3.30128837699106 4 0.0 0.0 Y 0.0 N Y 1444 24606 ENSG00000126453 ENSG00000126457 + - 19 19 50177172 50192286 coding utr5p BCL2L12 PRMT1 50168399 50179043 + + 0.0 50173745 50183744 + - N - - N SA468 2 0.0 1.25 1 5 2 Y Y 0.0 0.0 20 1.46003282135735 1.11146642706933 1.46003282135735 1.11146642706933 4 - - 0.958263468749988 HCT116-unstranded 1.0 40975 CCAACAACTTTAGCTATGTTTTCTACATGTCCAGCTTCTTCCTCATCTCAGCTGCCCTCTTCATGGGTGGCAGCTTCTACGCCCTGCAGAAGAAGGAGCAAGGCAAGCAGGCTGTCGCGGCGGATGCCCTGGAGCGGGATCTTTTCTTGGAAGCCAAAGACGGTCCTGGGAAGCAACGGTCCCCTGAGATCAT|GACACTCACAGCCTAAGCCACCTCTACCCCTACGTTGTCAAATGCGATGGGAGTGTGGCTAGACCACCTCCTTCCCTGGTGCTTTGTTTCCTGTAACCACGAGCAATCTATCACACACCCGCTTCCTGATAATCTCCGAGAAGGAATCGGCC 4 0.5397556262024931 0.589925518350931 0.209004382119493 Y Y 3.55128313764676 3.4614567406359305 3.4614567406359305 0 0.0 0.0 Y 0.0 N N 1312 2773 ENSG00000170190 ENSG00000125449 + - 17 17 73102257 73126360 coding upstream SLC16A5 ARMC7 73083822 73106047 + + 0.0 73100275 73105111 + - N - - N SA468 1 0.0 1.0 1 0 2 N Y 0.0 0.0 5 0.4537939850164721 0.6708258908939161 0.6708258908939161 0.4537939850164721 4 - - 0.971700146688461 HCT116-unstranded 1.0 186485 GGGCTGGCACCTTGCTTCAGCAGCTCCAGGGCGATGGCGGTGCTGCCAAACATCATGACCTGCAGCGCCGTCTTGCCGAAGCGGTTGAGGGCGTCGGGATGCACCAGCTCCCGGTGCAGAAGGCGGCGCACCTCCTGCACGTCGCCCCGGGCCGCCGCCCCACTCAGCCGGTCGCCGGCGCGAACCTCCTCCAGCAGCATGTCGACACTGGCGGCC|GGGAAAGACTTAATACTCCAAATCACGACGTTTCTCTCCGGCACATACTTGGCGCTGCCCACACTGGTCTTGAATCTGGGGGAGTCGGCATCGCTGGGTACAGGCACAGATATCTCCACACCGTTGGCCACTGACTGTTTCTTAAACTGCCCCTTGGCCTGTCAGGGGAGCGAGC 7 0.4965243091605901 0.864966897406254 0.8225077478457521 Y Y 3.63080414160633 3.41319935075004 3.41319935075004 0 0.0 0.0 Y 0.0 N Y 558 3452 ENSG00000129355 ENSG00000129354 - + 19 19 10679735 10697991 utr5p coding CDKN2D AP1M2 10677138 10683347 - - 0.0 10679344 10687874 + - N - 0.461848765613727 N SA468 1 0.0 1.0 1 0 1 N Y 0.0 0.0 12 1.4337259236752298 1.09831297822827 1.4337259236752298 1.09831297822827 4 - 33.1666666666667 0.954620790882203 HCT116-unstranded 1.0 64807 TCAAGCTCAACAAGTCAGAACTAAAGGAGCTGCTGACCCGGGAGCTGCCCAGCTTCTTGGGGAAAAGGACAGATGAAGCTGCTTTCCAGAAGCTGATGAGCAACTTGGACAGCAACAGGGACAACGAGGTGGACTTCCAAGAGTACTGTGTCTTCCTGTCCTGCATCGCCATGATGT|GGACAGAGATCAGGGAAATAAAGGCAGAAGGCAGTGAGAGGGAGGCTATGCCTGCTGCTTGGATTCTCTGGGCTCACTCCCACAGTGAGCTGCACACTGTGATGGAGACTCCTCTGGAGAAGGCCCTGACCACTATGGTGACCACGTTTCACAAATATTCGGGGAGAGAGGGTAGCAAACTGACCCTGAGTAGGAAGGAACTCAAGGAGCTGATCAAGAAAGA 8 0.70453108065554 0.548537421701498 0.461506866304302 Y Y 3.66016945000958 3.00868674126906 3.00868674126906 0 0.0 0.0 Y 0.0 N N 5133 52 ENSG00000196154 ENSG00000196420 + - 1 1 153522612 153514241 coding utr5p S100A4 S100A5 153516089 153509623 - - 0.0 153516285 153513947 - + N - - N SA468 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 14 1.1706569468540902 1.30219143526466 1.30219143526466 1.1706569468540902 4 - - 0.931621022058116 HCT116-unstranded 1.0 193749 GGACAAGAACGAGTGGAAGAACTGCATTGACATCACGGGAGTGCGCCTGCCCACCGGCTACTACTTCGGGGCCTCCGCCGGCACCGGCGACCTGTCTGACAATCATGACATCATCTCCATGAAGCTGTTCCAGCTGATGGTGGAGCACACGCCCGACGAGGAGAGCATCGACTGGACCAAGATCGAGCCCAGCGTCAACTTCCTCAAGTCGCCCAAAG|AGGCCGAGCATGGTTATGCGTCCCTGTGCCCGCATCGCAGTCCAGGCCCCATCCACAGGAGGAAGAAGCGACCCCCCCAGGCTCCTGGCGCGCAGGACAGCGGGCGGTCAGTGCACAATGAACTGGAGAAGCGCAGGAGGGCCCAGTTGAAGCGGTGCCTGGAGCGGCTGAAGCAGCAGATGC 5 0.839733409577643 0.7255139272021508 0.628503274678664 Y Y 3.3536034980430003 3.49424793801946 3.3536034980430003 0 0.9945491123616892 0.0 Y 0.9945491123616892 N Y 7862 2075 ENSG00000169223 ENSG00000213347 + - 5 5 176778853 176739758 coding coding LMAN2 MXD3 176758563 176728462 - - 0.0 176761285 176738485 - + N - - N SA468 1 0.0279329608938547 1.0 1 0 1 Y Y 0.0 0.0279329608938547 7 1.22984746663885 0.88128107235083 1.22984746663885 0.88128107235083 4 - - 0.987398247595188 HCT116-unstranded CGHSA0638 1.0 30731 TAAGTATGAGATGCGCAGCCACGGCCCCACCCACAGCCTGGTCATCCATGACGTTCGACCTGAGGACCAAGGCACTTACTGCTGCCAGGCCGGCCAGGACAGCACCCACACACGGCTGCTGGTAGAG|GGACCCGCTACATCAGCACGGAGCTGGGCATCAGGCAGAGGCTGCTGGTGGCGGTGCTGACCTCTCAGACCACGCTGCCCACGCTGGGCGTGGCCGTGAACCGCACGCTGGGGCACCGGCTGGAGCGTGTGGTGTTCCTGACGGGCGCACGGGGCCGCCGGGCCCCACCTGGCATGGCAGTGGTGACGCTAGGCGAGGAGCGACCCATTGGACACCTGCACCTGGCGCTGCGCCACCTGCT 10 0.340214302867362 0.962414117324723 0.7141848708599301 Y Y 3.32696667658884 3.36720643949681 3.32696667658884 0 0.992147323048034 0.0 Y 0.520986705930051 N Y 194 47259 ENSG00000124006 ENSG00000123989 + - 2 2 220436581 220408509 coding intron OBSL1 CHPF 220415451 220403669 - - 0.0 220416251 220406911 - + N - 4.37435333545063 N SA468 1 0.0 1.0 1 0 1 N Y 0.0 0.0 7 0.69713278857603 0.756323308360787 0.756323308360787 0.69713278857603 4 - 535.714285714286 0.9754236742079208 HCT116-unstranded 1.0 167511 TTGCCTCCCTTCTTCTTGTCTATCTTAATAGCCACAGGTCTTTTTCTTGTTGGATAATTCTCCACCAAAATTTTCTCCTTGCAAAAGGGAAACTTCACCTTCAGCTGTAAATGTCAGGAAATGGGGTACATTGCTGAGAAAGCCTGGGAATCACTGCTCTTGTAAG|CTGAGGTCCCCGCCTGGCGCTCCGGCTGGCAGAGCGGCTGGCCGGCGACCGGCGGTCCCGGGCGGGCGGCGGACTCGGCGGCACTGCGCGCGGCAGCCTCCGCATCAGCAGCCGCCGCGGCAGCAGCACCAGCAGCGCACCCGCCTCTCAGTCGGCCGTGGCCTCCATTGCTCTC 6 1.0 0.6390688336382491 0.18284479885098104 N Y 3.62361669590707 3.21075977977757 3.21075977977757 2 0.8798703586274921 0.0 Y 0.0 N N 648 534 ENSG00000109265 ENSG00000174799 - + 4 4 57194791 56899270 utr5p downstream KIAA1211 CEP135 57036361 56815037 + + 0.0 57045450 56915465 - + N - - N SA468 1 0.29746835443038 1.0 1 0 1 N N 0.0 0.29746835443038 10 0.986508663079288 1.03912245844352 1.03912245844352 0.986508663079288 4 - - 0.979680568293094 HCT116-unstranded 1.0 119209 ATTTCCAATTTTGTCAGTTACGTGGGTAAAGTTGCCACAGGAAGATATGGACCATCACTTGGTGCAGCCCTGAAAGCCATTATCGCCATGGATACAGCAGGAATGATCCTGGGATGGAAATTTTTTGATCATGCGGCACATCTTGGGGGAGCTCTTTTTGGAAT|GATCTCCCTCTACACCTGGCGCCTCGCCTGCTGCCTGCTGGGACATGGCCTGGCCTGCTCAGCTGACCTGCTGCCACTTCTAGGCAGCCGTCATGTCACTTTGCTACAACTTCAAGCTAAGACAGGCAATGTTTTGGGAGATGAATCTGTTTTCTGACTGGCCAGGGATGTGCTGCAGTCCCCTCCCAGGCGCAGACTGGATACCTTCCAAG 14 0.910471138116792 0.615388168266218 0.744146171725681 Y Y 3.31319590126568 3.11761290642523 3.11761290642523 0 0.0 0.0 Y 0.0 N N 2160 779 ENSG00000175193 ENSG00000180834 + - 3 3 183602721 183543382 coding upstream PARL MAP6D1 183547173 183533664 - - 0.0 183551280 183544520 - + N - - N SA468 1 0.0 1.0 1 0 1 N Y 0.0 0.0 16 1.08515952938722 1.2956147108441298 1.2956147108441298 1.08515952938722 4 - - 0.9594265413099742 HCT116-unstranded 1.0 64848 CTGTTGCCGCAATCTTGCTGCCAATGATCTCTCCCCGTCCCGAATAGCCAGACTACAGAAGATCCTTCACAGCTATGTGCCTGAAGAGATCAGGGATGGAAATCAAGTTCGAGTTACCTCATGGGATGGCAGGAAATGGGGAGAACTGGAGGGGGACACCTATGACCGGGTGCTGGTGGATGTGCCCTGTACCACAGACCGCCACTCCCTTCATGAGGAGGAGAACAACATCTTTAAGCGGTCAAGGAAGAAGGAGCGACAGATATTGCCTGTGCTGCAAGTGCAGCTTCTTGC|GTCTACACCAGCTCTCAGCCCCTGCGTGTGGGGTACTATGAGACTGACAACTATACCATGCCCTCCCCGGCCATGAGGCGGGCCGTGCTGGAGACCAAACAGAGCCTTGAGGCTGCGGGGCACACGGTATGACTGCAGGGTCCTGGAAGTACTG 4 5.70792447021391e-06 0.2327244863799009 0.548344874919558 N Y 3.5758885146813 3.472331195140661 3.472331195140661 0 0.941688600931363 0.0 Y 0.00222717149220486 N Y 870 630 ENSG00000117481 ENSG00000117480 + - 1 1 46830824 46879520 coding coding NSUN4 FAAH 46805849 46859937 + + 0.0 46826500 46874131 + - N - 0.776676153614252 N SA468 1 0.0 1.0 1 0 2 N N 0.0 0.0 7 1.24957763990043 0.8944345211918872 1.24957763990043 0.8944345211918872 4 - 9.85714285714286 0.908491660536472 HCT116-unstranded CGHSA0337 1.0 64873 CCCGAATAGCCAGACTACAGAAGATCCTTCACAGCTATGTGCCTGAAGAGATCAGGGATGGAAATCAAGTTCGAGTTACCTCATGGGATGGCAGGAAATGGGGAGAACTGGAGGGGGACACCTATGACCGGGTGCTGGTGGATGTGCCCTGTACCACAGACCGCCACTCCCTTCATGAGGAGGAGAACAACATCTTTAAGCGGTCAAGGAAGAAGGAGCGACAGATATTGCCTGTGCTGCAAGTGCAGCTTCTTGC|AACCCAGACCTGGACTCAGAGGCGCTGCTAGCCCTGCCCCTGCCTCAGCTGGTGCAGAAGTTACACAGTAGAGAGCTGGCCCCTGAGGCCGTGCTCTTCACCTATGTGGGAAAGGCCTGGGAAGTGAACAAAGGGACCAACTGTGTGACCTCCTATCTGGCTGACTGTGAGACTCAGCTGTCTCAGGCCCCAAGGCAGGGCCTGCTCTATGGCGTCCCTGTGA 5 0.390690096074119 0.9025217841938172 0.654286842905596 N Y 3.5758885146813 3.31233066536513 3.31233066536513 0 0.995525037369208 0.0 Y 0.0 N Y 870 630 ENSG00000117481 ENSG00000117480 + - 1 1 46830824 46879520 coding coding NSUN4 FAAH 46805849 46859937 + + 0.0 46826500 46867763 + - N - - N SA468 1 0.0 1.0 1 0 2 N N 0.0 0.0 5 1.32849833294677 1.21669401779779 1.32849833294677 1.21669401779779 4 - - 0.986843536799404 HCT116-unstranded CGHSA0337 1.0 1647 GTTACTACCTGGCTACAGCGGCTGATGACTCCTCTGTCAAGCTCTGGGATCTGCGCAAGCTTAAGAACTTTAAGACTTTGCAGCTGGATAACAACTTTGAGGTAAAGTCACTGATCTTTGACCAGAGTGGTACCTACCTGGCTCTTGGGGGCACGGATGTCCAGATCTACATCTGCAAACAATGGACGGAGATTCTTCACTTTA|CAGAGCCCCACGATGTCGGCCAACGCCACACTGAAGCCACTCTGCCCCATCCTGGAGCAGATGAGCCGTCTCCAGAGCCACAGCAACACCAGCATCCGCTACATCGACCACGCGGCCGTGCTGCTGCACGGGCTGGCCTCGCTGCTGGGCCTGGTGGAGAATGGAGTCATCCTCTTCGTGGTGGGCTGCCGCATGCGCCAGACCGTGGTCACCACCTGGGTGCTGCAC 56 0.942324184985021 0.899478607937603 0.5822269151666021 N Y 3.5397463357327204 3.48337348351473 3.48337348351473 0 0.0 0.0 Y 0.0 N Y 7704 1338 ENSG00000110107 ENSG00000183134 + - 11 11 60674060 60623444 coding utr5p PRPF19 PTGDR2 60658202 60618413 - - 0.0 60665318 60621204 - + N - - N SA468 1 0.0 1.0 1 0 1 N N 0.0 0.0 54 1.39426557715206 1.47976299461893 1.47976299461893 1.39426557715206 4 - - 0.9878187532848772 HCT116-unstranded 1.0 17694 CGCGCGGAGGAAGCGAAGGAGGCGGGAGCGGAGACCTCGCTGCGCTCATGGCGTCGCCCGGAAGTGGAATTACTGGGCAAAGGGCATTCAGATTTGGGAGAAGTAGCCCCAGAAATAAAAGCATCAGAGAGACGAACAGCTGTGGCCATTGCAGATTTGGAATGGAGAGAAATGGAAGGAGATGATTGCGAGTTCCGTTATGGAGATGGTACAAATGAGGCTCAGGACAATGATTTTCCAACAG|GTGCTGTCCTGGAGCCGAGAGCTGCCTTGCGCTTGGCGCGCCCTGCACACCTCCCCGGTCTGCGCCAAGAACCGGGCGGCCCGAGTACGCGTAAGCAAGGGGGACAAGCCGGTGACCTACGAGGAGGCACACGCGCCGCACTACATCGCCC 8 0.6785309229537961 0.389620121830474 0.376737225817255 Y Y 3.59425138750382 3.24991303975317 3.24991303975317 0 0.993394206970366 0.0 Y 0.59704662519232 N Y 3032 3071 ENSG00000106608 ENSG00000062582 + - 7 7 43966010 43909492 coding coding URGCP MRPS24 43915493 43906157 - - 0.0 43921258 43908975 - + N - - N SA468 1 0.16228070175438594 1.0 1 0 1 N Y 0.16228070175438594 0.0 6 1.22327074221832 0.854974174668716 1.22327074221832 0.854974174668716 4 - - 0.973065652577994 HCT116-unstranded 1.0 137987 TTACTTATGTGGAAAGGGTGACAGCAGTATTCGCTATTTTGAGATCACGGATGAATCCCCGTACGTCCACTACCTCAACACATTCAGCAGCAAGGAGCCTCAGAGAGGGATGGGTTACATGCCCAAGAGGGGACTTGATGTTAACAAATGTGAGATTGCCAG|GTGCCATGCCTCTGCAACTCCTCCTGTTGCTGATCCTACTGGGCCCTGGCAACAGCTTGCAGCTGTGGGACACCTGGGCAGATGAAGCCGAGAAAGCCTTGGGTCCCCTGCTTGCCCGGGACCGGAGACAGGCCACCGAATATGAGTACCTAGATTATGATTTCCTGCCAGAAACGGA 11 0.920063183791857 0.9341295055677792 0.378939663852048 Y Y 3.52105259334297 3.35926336043241 3.35926336043241 0 0.0 0.0 Y 0.0 N Y 13057 4441 ENSG00000110880 ENSG00000110876 + - 12 12 109125372 109027735 coding coding CORO1C SELPLG 109038885 109015686 - - 0.0 109046048 109018088 - + N - - N SA468 1 0.0 1.0 1 0 4 N Y 0.0 0.0 17 1.08515952938722 1.03254573402299 1.08515952938722 1.03254573402299 4 - - 0.9893839746611032 HCT116-unstranded 1.0 138017 TGTGCTGTCAATCCCAGATTTGTTGCCATAATCATAGAGGCAAGTGGGGGAGGAGCGTTCCTTGTCCTCCCTCTGCACAAGACTGGTCGAATTGACAAATCTTACCCTACAGTATGTGGCCACACAGGACCAGTGCTGGACATAGACTGGTGCCCACATAACGATCAGGTCATTGCCAGCGGTTCAGAGGACTGCACGGTCATGGT|GCCATGCCTCTGCAACTCCTCCTGTTGCTGATCCTACTGGGCCCTGGCAACAGCTTGCAGCTGTGGGACACCTGGGCAGATGAAGCCGAGAAAGCCTTGGGTCCCCTGCTTGCCCGGGACCGGAGACAGGCCACCGAATATGAGTACCTAGATTATGATTTCCTGCCAGAAACGGAGCCTCCAGAAATGCTGAGGAACAGCACTG 31 0.9532016812435572 0.667219554470271 0.417981152042119 Y Y 3.65760879692984 3.41054541171446 3.41054541171446 0 0.0 0.0 Y 0.0 N Y 13057 4441 ENSG00000110880 ENSG00000110876 + - 12 12 109125372 109027735 coding coding CORO1C SELPLG 109038885 109015686 - - 0.0 109072048 109018088 - + N - - N SA468 1 0.0 1.0 1 0 4 N Y 0.0 0.0 38 1.36138195504942 1.3548052306288898 1.36138195504942 1.3548052306288898 4 - - 0.9814270471539748 HCT116-unstranded 1.0 137184 TGTCAGTGCTGTTCCTCAGCATTTCTGGAGGCTCCGTTTCTGGCAGGAAATCATAATCTAGGTACTCATATTCGGTGGCCTGTCTCCGGTCCCGGGCAAGCAGGGGACCCAAGGCTTTCTCGGCTTCATCTGCCCAGGTGTCCCACAGCTGCAAGCTGTTGCCAGGGCCCAGTAGGATCAGCAACAGGAGGAGTTGCAGAGGCATGGCAC|AGCAACAATCTCTTGTTTCCTGGGATCAATGACTCTCACTTTCTTGTCTTTGGAAGCTGTGCAGATCAGACTGCCATTCCGGTTCCAGCTCACATTGTAAATCATGTCTGAATGCATATCGTCCAAGTTTATAAGGGCTTCCCCTGTTCCCACATTCCAGATGATAATGGCATTATCACAGCCTA 12 1.0 0.771125577602058 0.866998664111619 Y Y 3.35926336043241 3.42360979693834 3.35926336043241 0 0.0 0.0 Y 0.0 N Y 4441 13057 ENSG00000110876 ENSG00000110880 - + 12 12 109027735 109125372 coding coding SELPLG CORO1C 109015686 109038885 - - 0.0 109018088 109052514 + - N - 1.37863708994214 N SA468 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 28 1.3416517817878302 1.2430009154799 1.3416517817878302 1.2430009154799 4 - 50.7857142857143 0.978192124298648 HCT116-unstranded 1.0 137171 CCAGTCAGAGGAGTGGTGTCAGTGCTGTTCCTCAGCATTTCTGGAGGCTCCGTTTCTGGCAGGAAATCATAATCTAGGTACTCATATTCGGTGGCCTGTCTCCGGTCCCGGGCAAGCAGGGGACCCAAGGCTTTCTCGGCTTCATCTGCCCAGGTGTCCCACAGCTGCAAGCTGTTGCCAGGGCCCAGTAGGATCAGCAACAGGAGGAGTTGCAGAGGCATGGCACCAC|ACTGGCCGTGTCTGTGGTTTTCTTGGGGATGCTGATCAGGTCGCACTTCTTGTTTGCAGTGGGCTTGCTATCCAGAATGTTCTTCTTGACCACCTTGAGATCCCTGTTTTTGCCTGGAATGTACCCGTGCTTCAAGGAGATGAGGATTGGGTCTGCATTCTTGCCTTCGAACCACTCTTCTGCCTCCAGCGCGGCCTCTGGCCCCGCTGTGTCAGGATACAGGTCATC 316 1.0 0.912049598225204 0.461208868436073 Y Y 3.34520999103131 3.4048456965317007 3.34520999103131 6 0.0 0.0 Y 0.0 N Y 4441 13057 ENSG00000110876 ENSG00000110880 - + 12 12 109027735 109125372 utr5p coding SELPLG CORO1C 109015686 109038885 - - 0.0 109018088 109042381 + - N - 0.967345968514157 N SA468 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 367 1.53895351440369 1.55210696324475 1.55210696324475 1.53895351440369 4 - 2.85558583106267 0.9564704460442222 HCT116-unstranded 1.0 162714 GGCTGAGGAGGAGGAGCTCAGGGCTGAGCTTACCAAGGTGGAAGAGGAAATTGTCACTCTGCGCCAGGTCCTGGCAGCCAAGGAGAGGCACTGTGGAGAGCTCAAGAGGAGGCTGGGCCTCTCCACCCTGGGGGAGCTGAAACAGAACCTGTCCAGGAGCTGGCATGACGTGCAGGTCTCTAGCGC|GAGATTTGTTATGAGGAATTGGCCCACGTCATTATGGAGACGGAATCTCATGCTCTGCCATTTGCTGAAGATTGAGGAAAGCAGTGGGATAATAACAGTCCAAGGACAGGAGGAGACACGTGGCCCCGCTCAGGCTGGCAGGCGAGAAGGAAAACCCAGGCCAACTCCTCCTCCCACCCCTTTCTATTCGGGACC 18 1.0 0.471368289456039 0.28192453672990697 Y Y 3.67952553980864 3.5110433747387795 3.5110433747387795 0 0.9892754602263132 0.0 Y 0.0 N N 8010 7447 ENSG00000101150 ENSG00000101152 + - 20 20 62522898 62567384 coding intron TPD52L2 DNAJC5 62496596 62526518 + + 0.0 62505169 62557895 + - N - 0.0112374702968267 N SA468 1 1.0 1.0 1 0 4 N Y 0.0 1.0 20 1.18381039569515 1.30876815968519 1.30876815968519 1.18381039569515 4 - 1.4 0.970193839180065 HCT116-unstranded CGHSA0577 1.0 162839 TGTCGACACAGGTGTGGCTGCCCGGACTCCTGCTGTTGAGGGTCTGACAGAGGCTGAGGAGGAGGAGCTCAGGGCTGAGCTTACCAAGGTGGAAGAGGAAATTGTCACTCTGCGCCAGGTCCTGGCAGCCAAGGAGAGGCACTGTGGAGAGCTCAAGAGGAGGCTGGGCCTCTCCACCCTGGGGGAGCTGAAACAGAACCTGTCCAGGAGCTGGCATGACGTGCAGGTCTCTAGCGC|AATAGCCTAACATGGCAGACCAGAGACAGCGCTCACTGTCTACCTCTGGGGAGTCATTGTACCACGTCCTTGGGTTGGACAAGAACGCAACCTCAGATGACATTAAAAAGTCCTATCGGAAGCTTGCCTTGAAATATCACCCCGACAAGAACCCCGACAACCCGGAGGCCGCGGACAAGTTTAAGGAGATCAACAACGCGC 10 0.655564123112135 1.0 0.7726105877712509 Y Y 3.67952553980864 3.72824693801095 3.67952553980864 0 0.995036208479244 0.0 Y 0.0072416958487744295 N Y 8010 7447 ENSG00000101150 ENSG00000101152 + - 20 20 62522898 62567384 coding utr5p TPD52L2 DNAJC5 62496596 62526518 + + 0.0 62505169 62559688 + - N - - N SA468 2 0.00985221674876847 1.33333333333333 1 8 4 N Y 0.0 0.00985221674876847 24 1.4337259236752298 1.3350750573673 1.4337259236752298 1.3350750573673 4 - - 0.936244219104641 HCT116-unstranded CGHSA0577 1.0 64175 CCTACTCGTTTGATTGCAACTATCATGGTGCTGTTGTGTTTTGCACTTACCCTGTGTTCTGCCTTTTGGTGGCATAACAAGGGACTTGCACTTATCTTCTGCATTTTGCAGTCTTTGGCATTGACGTGGTACAGCCTTTCCTTCATACCATTTGCA|AGACGGATGTTTCCAGTCCTAAAGATTAGTGTCACAGGGTTGGACCCCAATGCCATGTACTCCCTCCTGCTGGACTTTGTCCCTACGGACAGTCACCGCTGGAAGTACGTCAACGGGGAATGGGTGCCCGCTGGCAAGCCAGAGGTCTCCAGCCACAGCTGCGTCTACATTCACCCGGACTCCCCCAACTTTGGGGCCCACTGGATGAAAGCTC 9 0.877500912880622 0.5681776611209011 0.265342177977956 N Y 3.64553343878587 3.5587317031712 3.5587317031712 0 0.993607021908909 0.0 Y 0.0 N Y 833 362 ENSG00000213064 ENSG00000143178 + - 1 1 168212378 168283664 coding coding SFT2D2 TBX19 168195176 168250278 + + 0.0 168208398 168260398 + - N - - N SA468 1 0.0 1.0 1 0 2 Y N 0.0 0.0 7 0.92731814329453 1.32192160852625 1.32192160852625 0.92731814329453 4 - - 0.9803910877059642 HCT116-unstranded CGHSA0039 1.0 178747 CATCAGGAGATCGCAGTCCCTGTGGCCAACCTCAAGCTGTCCTGCCAACCCATGTTACGATGAGCAATGATGTTTCTGAGGAGGAGAGCGAGGAAGAGGAAGAGGACAGTGATGAGGAAGAAGTTGAGCTGTGCCCCATCCTTCCTGCCAAAAAGCAGGGGGGCAGGCCCTAGCCCTCCTAGGT|AACTGTTCAGTCCTCACCTAATTTTACACAGCATGTGAGGGAGCAGAGCCTGGTGACGGATCAGCTCAGCCGCCGCCTCATCCGGACCTACCAACTCTACAGCCGCACCAGCGGGAAGCACGTGCAGGTCCTGGCCAACAAGCGCATCAACGCCATGGCAGAGGACGGCGACCCCTTCGCAAAGCTCATCGTGGAGACGGACACCTTTGGAAGCAGAG 5 0.3432670029943221 0.400345382951244 0.39787029204881297 Y Y 2.94447344351231 3.71041843152174 2.94447344351231 0 0.0 0.0 Y 0.0 N Y 2799 165 ENSG00000107833 ENSG00000107831 + - 10 10 103543170 103535827 utr3p coding NPM3 FGF8 103541082 103530081 - - 0.0 103541484 103534669 - + N - - N SA468 1 0.0 1.0 1 0 3 Y Y 0.0 0.0 7 1.1969638445362 1.34822850620836 1.34822850620836 1.1969638445362 4 - - 0.957031009844773 HCT116-unstranded 1.0 87132 CCTTCTGTGAAGCAAGAGCCACCTGACCCAGAGGAGGACAAGGAGGAGAACAAGGATGATTCTGCCTCCAAATTGGCCCCAGAGGAAGAGGCAGGAGGGGCTGGCACACCCGTGATCACGGAGATTTTCAGCCTGGGTGGAACCCGCTTCCGAGATACAGCAGTCTGGTTGCCAA|GAGATCCAAGCCTCCTAAAGGCCAAGGAGCTGAGCACCATCTAGAAAGAATCCGACGCAGCCATCAGAAGCATAATGCTATTTTGGCTTCCATTAAGTCAAGTGAGCGGGATCGCTTGAAAGCTGAGTGGGACCAGCACAATGACTGCAAGATTTTGGACAGCCTTGTGC 4 0.5826687006582629 0.563644771805521 0.22083230706655 Y Y 3.8668252384476296 3.44143830342756 3.44143830342756 0 0.0 0.0 Y 0.00289017341040454 N Y 2204 66 ENSG00000141644 ENSG00000172361 + - 18 18 47808144 47792892 coding coding MBD1 CCDC11 47793252 47753563 - - 0.0 47799047 47788589 - + N - - N SA468 1 0.0 1.0 1 0 1 N Y 0.0 0.0 7 0.920741418874002 1.0128155607614 1.0128155607614 0.920741418874002 4 - - 0.954409586774922 HCT116-unstranded 1.0 1786 GCAGTGGGAGTCCCAGCTACCGGCCCGCCATGGGCTTCACCACTCTGGCCACCGGCTACCCTTCCCCTCCACCCGGCCCCGCCCCTGCTGGGCCTGGGGACAGCTTGGACGTGTTTGGACAGACGCCTTCCCCTCGAAGGACGGGGGAGGAATTGCTCCGACCGGAGACCCCACCACCCACGTTACCTACTTCAGG|AACACTTCCACCTGCACCCGGGAACGCTGCTGCGCCTGAGAGGCTGGAGGCTCTGAAATACCAACGGATAAAGAAGCCCAAAAAGTCATCCAAGGGCTCTTCGAAGTCAAAGAAACGATCCGACGATTCTGCCTCCCAGACTCAGCAGCTTCCCAACTCTCAGGTTCTGTGGCCCGATGAAGCTGTCTGCCTCCGAAAGAAGAAGAGACAT 12 0.545150781293686 0.922753815978933 0.3904759393582 Y Y 3.2499266201223 3.36464578641707 3.2499266201223 0 0.0 0.0 Y 0.0 N Y 507 77 ENSG00000080854 ENSG00000254918 + - 11 11 133826880 133782257 coding coding IGSF9B RP11-259P6.1 133785185 133778459 - - 0.0 133789637 133781902 - + N - - N SA468 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 7 1.00623883634087 1.15750349801303 1.15750349801303 1.00623883634087 4 - - 0.972763767052138 HCT116-unstranded 1.0 168153 CTCGAGCTTGCTGTTCCAGACGCTGGTACAGCTGGTAGGGGTCCCTCTCGCAGAGCCTATCCACGAGCTCCTTCACTCCCTCCTTGTCAGGCACCAGAGACTGGTCCTGGTCATCTGCCAGCGGGGTTCCTGCCTGGCGGTAGATGCAGCGCACCGTGTAGCGCACTTCTGACCAGTAGTTCTGCAGCTGCTGAGGTTCCCGGTCCGCCTCTGCCGAAATTTCT|CACTGGCTGGTCAAGGCCGCCATGCCTCTCCTCCTTCTCCACGGTCCTGCGGCAGTCCGGGCACACCCACAGTGGCAGGTGCAGCACGCTGTTGCCCTTGGGAGCCATGGAAAGGGCCAATTTGCTCGCAGTCTTAATTCCACTCTCTAAGAATGATGAGTCTTTC 6 0.585799261156899 0.608907582100261 0.652465828848928 Y Y 3.4655144718019804 3.41525614272 3.41525614272 6 0.993991310510584 0.00856623424644865 Y 0.0 N N 1051 11862 ENSG00000125386 ENSG00000063978 - + 4 4 2734292 2627047 utr5p utr3p FAM193A RNF4 2626988 2463947 + + 0.0 2628137 2598056 - + N - 45.0601510320385 N SA468 1 0.0 1.0 1 0 1 N Y 0.0 0.0 14 1.44030264809576 0.92731814329453 1.44030264809576 0.92731814329453 4 - 4 0.9353601433388072 HCT116-unstranded 1.0 64512 AGAAAAGGCCATGCTGCAGGGCCGGCAGCGGCAGGCGGAGCAGGAGGCCACAGTGGCGCCGGCAGAGCAGGAGTGGCTGGAGGAGCTGTGGTTGGAGCAGGAGGTGGCACGGCAGGGCCTGGAGGGCTCCCTATGAGTGGCGGAGCAGGCCCAGGAGGCGCTGGAGCAACAGCTCCCCACACTGCACCATGAGCTCAGTTGGCTGCAGGAGCAGCTAGCACAG|GCAATCTGAAGGCAAATCCTGTTTAGACCCAGGCGAAGGTTCCCGGTGACCCGGGCTCTCACCAGCCAATTGTCCCTTGCCGTCCTCCTGAGGGTGCCTGGAGCTTAAGCACTGTGTGCTCTTGGCCTCCACACTGGGGATGCCGCTGACTCCCACTGTCCAGGGCTTCC 25 1.0 0.734493932661537 0.4689605004589 Y Y 3.37606302995105 3.67320333000993 3.37606302995105 1 0.994132576888624 0.0 Y 0.0 N Y 1775 1876 ENSG00000215908 ENSG00000219481 + - 1 1 16971178 16940083 intron intron CROCCP2 NBPF1 16944751 16888818 - - 0.0 16952270 16935274 - + N - 0.411344455736294 N SA468 4 0.164772727272727 1.96666666666667 1 21 1 N Y 0.0 0.164772727272727 30 1.4731862701984 1.15750349801303 1.4731862701984 1.15750349801303 4 - 6.8 0.932571215717856 HCT116-unstranded 1.0 168037 TAAAAGAATAAAAAAGGAATTGCAGTGCAACAAAGTACGTGAAAATCAGGTTTCAATAGAATGTGACACAACGTGCAAGGAAATGAAGCGGAAAGCATCTGAGATAAAAGAAGCAGAAGCCAAAGCTGCTCTTGAAGAAGAAAAACGAAGACAACAGG|TCTTGAGAGCTGATGACAATAACATGGGCAATGGCTGCTCTCAGAAGCTGGCGACTGCTAACCTCCTCCGGTTCCTATTGCTGGTCCTGATTCCATGTATCTGTGCTCTCGTTCTCTTGCTGGTGATCCTGCTTTCCTATGTTGGAACATTACAAAAGGTCTATTTTAAATCAAATGGGAGT 28 0.999656101068402 0.885316821198235 0.8568528344992871 N Y 3.24061960172077 3.48271113610543 3.24061960172077 0 0.99368944652734 0.0 Y 0.00293255131964798 N Y 728 310 ENSG00000170448 ENSG00000145244 + - 4 4 47916653 47840123 coding coding NFXL1 CORIN 47849257 47596015 - - 0.0 47853112 47809064 - + N - - N SA468 1 0.0 1.0 1 0 1 Y N 0.0 0.0 24 1.03912245844352 1.11146642706933 1.11146642706933 1.03912245844352 4 - - 0.971913246695276 HCT116-unstranded CGHSA0792 1.0 158653 GGATAAGCACTATGGCTTTCAGCTCTATCAGAGTGACCCTAGTGGAAATTACGGGGGATGGAAGGCCACATGCATTGGAAATAATAGCGCTGCAGCTGTGTCAATGTTGAAACAAGACTATAAAGAAGGAGAAATGACCTTGAAGTCAGCACTTGCTTTAGCTATCAAAGTACTAAATAAGACCATGGATGTTAGTAAACTCTCTGCTGAAAAAG|GATGAGAAAAATCAGTTAATGACAACAAACGTCTGGTTGAAACAGGAATGGATAGATGTAAAATTAAGATGGAACCCTGATGACTATGGTGGAATAAAAGTTATACGTGTTCCTTCAGACTCTGTCTGGACACCAGACATCGTTTTGTTTGATAATGCAGATGGACGTTTTGAAGGGACCAGTACGAAAACAGTCATCAGGTACAATGGCACTGTCACCTGGACTCC 8 0.7719842713833148 0.717179091863203 0.20570950360825505 Y Y 3.52936639476796 3.43681151080804 3.43681151080804 0 0.0 0.0 Y 0.0 N Y 8001 725 ENSG00000041357 ENSG00000169684 + - 15 15 78841604 78887611 coding coding PSMA4 CHRNA5 78832747 78857862 + + 0.0 78839040 78878987 + - N - - N SA468 1 0.0 1.0 1 0 3 Y Y 0.0 0.0 6 0.953625040976645 1.24957763990043 1.24957763990043 0.953625040976645 4 - - 0.9803910877059642 HCT116-unstranded 1.0 158637 ATAAGCACTATGGCTTTCAGCTCTATCAGAGTGACCCTAGTGGAAATTACGGGGGATGGAAGGCCACATGCATTGGAAATAATAGCGCTGCAGCTGTGTCAATGTTGAAACAAGACTATAAAGAAGGAGAAATGACCTTGAAGTCAGCACTTGCTTTAGCTATCAAAGTACTAAATAAGACCATGGATGTTAGTAAACTCTCTGCTGAAAAAG|GATTATCTGAACCTTCTTCTATTGCAAAACATGAAGATAGTTTGCTTAAGGATTTATTTCAAGACTACGAAAGATGGGTTCGTCCTGTGGAACACCTGAATGACAAAATAAAAATAAAATTTGGACTTGCAATATCTCAATTGGTGGAT 10 0.7916139163335691 0.468033607391723 0.7344273671432181 Y Y 3.52936639476796 3.51207644450867 3.51207644450867 0 0.0 0.0 Y 0.00275482093663904 N Y 8001 725 ENSG00000041357 ENSG00000169684 + - 15 15 78841604 78887611 coding coding PSMA4 CHRNA5 78832747 78857862 + + 0.0 78839040 78873153 + - N - 0.515819345080131 N SA468 1 0.0 1.0 1 0 3 Y Y 0.0 0.0 15 1.1706569468540902 1.01939228518193 1.1706569468540902 1.01939228518193 4 - 2.6 0.975951043920046 HCT116-unstranded 1.0 187204 AACTTCCGCTTCCGGTTCCTAGCGTTAACTGCGACCGGGGTTCAGCGCTCGGGTGAGGAGCTGGTGGCGTCGGCAGGTTCGAGGCGATTCG|AGGCCGAGTGTACTACTTCAACCACATCACTAACGCCAGCCAGTGGGAGCGGCCCAGCGGCAACAGCAGCAGTGGTGGCAAAAACGGGCAGGGGGAGCCTGCCAGGGTCCGCTGCTCGCACCTGCTGGTGAAGCACAGCCAGTCACGGCGGCCCTCGTCCTGGCGGCAGGAGAAGATCACCCGGACCAAGGAGGAGGCCCTGGAGCTGATCAACG 53 1.0 0.43097941243052296 0.713229755263347 N Y 3.36819965647335 3.77530342425761 3.36819965647335 0 0.0 0.0 Y 0.0 N Y 3330 1861 ENSG00000198258 ENSG00000127445 + - 19 19 9940791 9960358 utr5p intron UBL5 PIN1 9938568 9945933 + + 0.0 9938660 9949112 + - N - - N SA468 1 0.0 1.0 1 0 1 N N 0.0 0.0 44 0.591905197847573 1.01939228518193 1.01939228518193 0.591905197847573 4 - - 0.981569849126143 HCT116-unstranded 1.0 187432 AGTAGGTGACCCCGCCCCTGGATTCTGGAAGACCTCACCATGGGACGCCCCCGACCTCGTGCGGCCAAGACGTGGATGTTCCTGCTCTTGCTGGGGGGAGCCTGGGC|AGTGAGTACACCGTGCACCTGGGCAGTGATACGCTGGGCGACAGGAGAGCTCAGAGGATCAAGGCCTCGAAGTCATTCCGCCACCCCGGCTACTCCACACAGACCCATGTTAATGACCTCATGCTCGTGAAGCTCAATAGCCAGGCCAGGCTGTCATCCATGGTGAAGAAAGTCAGGCTGCCCTCCCGCTGCGAACCCCCTGGAACCACCTGTACTGTCTCCGGCTGGGGCACTACCACGAGC 21 0.7562757325273142 0.927208243798484 0.851931385315174 Y Y 3.30232144676095 3.47911741325579 3.30232144676095 0 0.990680831802327 0.0 Y 0.0 N Y 291 1272 ENSG00000129455 ENSG00000169035 + - 19 19 51504958 51487320 coding coding KLK8 KLK7 51499264 51479729 - - 0.0 51504354 51483743 - + N - - N SA468 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 10 0.5195612292217581 0.868127623509773 0.868127623509773 0.5195612292217581 4 - - 0.9754598267335832 HCT116-unstranded 1.0 109325 TGGCCGTTAGCGCGGCTTCGGCGGTTGTCTTGGAGAAGCAAGATGGCGGCGACGGCGGCCGCAGTGGTGGCCGAGGAGGACACGGAGCTGCGGGACCTGCTGGTGCAGACGCTGGAGAACAGCGGGGTCCTGAACCGCATCAAGGCTGAACTCCGAGCAGCTGTGTTTTTAGCACTAGAGGAGCAAGAAAAAGTA|GAGAGTCACCTCTACTTTCCTGCTACCGCTGCCTGTGAGCTGAAGGGGCTGAACCATACACTCCTTTTTCTACAACCAGCTTGCATTTTTTCTGCCCACAATGAGCGGGGAATCAATGAATTTCAGCGATGTTTTCGACTCCAGTGAAGA 6 0.461232951773901 0.8534210104664871 0.4046921129405969 Y Y 3.15934974741952 3.44036538086432 3.15934974741952 0 0.993352601156069 0.0 Y 0.0 N Y 448 1026 ENSG00000213066 ENSG00000112486 + - 6 6 167455906 167553184 coding utr5p FGFR1OP CCR6 167412670 167525295 + + 0.0 167413601 167549526 + - N - - N SA468 1 0.0 1.0 1 0 3 N Y 0.0 0.0 10 0.966778489817702 0.8089371037250159 0.966778489817702 0.8089371037250159 4 - - 0.987997694620178 HCT116-unstranded CGHSA0270 1.0 109965 TTAGGAACTGGAGAAGATGATGACTATGTTGATGATTTTAATAGTACCAGCCATCGCTCAGAGAAAAGTGAGATAAGTATTGGTGAAGAGATAGAAGAAGACCTTTCTGTGGAAATAGATGACATCAATACCAGTGATAAG|GGCAGGCCTTATGAAAACAGGAGAGAACGCAGAGACGGAGGGTTTGTGAAGACGGAGGCATAGATTGGAGTGATGCATTCACAAGTCAAGGGGCACCAGGAACTGCAGACCCCACCGGAAATGGGAAGCGAGGCTGGGGACGGTTCCCTGCACAGCCTCCAAAT 9 0.6794718257295971 0.971289983650488 0.846830807197282 Y Y 3.56232542602083 3.3980196256232102 3.3980196256232102 0 0.978792935613962 0.0 Y 0.0 N N 448 1026 ENSG00000213066 ENSG00000112486 + - 6 6 167455906 167553184 coding upstream FGFR1OP CCR6 167412670 167525295 + + 0.0 167447459 167506113 + - N - - N SA468 1 1.0 1.0 1 0 3 N Y 0.0 1.0 5 0.88128107235083 0.8615508990892451 0.88128107235083 0.8615508990892451 4 - - 0.9795445120071672 HCT116-unstranded CGHSA0270 1.0 110449 TTGGATTAGGAACTGGAGAAGATGATGACTATGTTGATGATTTTAATAGTACCAGCCATCGCTCAGAGAAAAGTGAGATAAGTATTGGTGAAGAGATAGAAGAAGACCTTTCTGTGGAAATAGATGACATCAATACCAGTGATA|AGAGTCACCTCTACTTTCCTGCTACCGCTGCCTGTGAGCTGAAGGGGCTGAACCATACACTCCTTTTTCTACAACCAGCTTGCATTTTTTCTGCCCACAATGAGCGGGGAATCAATGAATTTCAGCGATGTTTTCGACTCCAGTGAAGATTATTTTGTGTCAGTCAATA 12 0.30391609168171 0.8335934493546271 0.265763321713055 Y Y 3.54040868314203 3.3995031233403905 3.3995031233403905 0 0.958466029723992 0.0 Y 0.238543878273178 N Y 448 1026 ENSG00000213066 ENSG00000112486 + - 6 6 167455906 167553184 coding utr5p FGFR1OP CCR6 167412670 167525295 + + 0.0 167447459 167549526 + - N - - N SA468 1 0.0 1.0 1 0 3 N Y 0.0 0.0 10 0.6708258908939161 0.591905197847573 0.6708258908939161 0.591905197847573 4 - - 0.9822650627525872 HCT116-unstranded CGHSA0270 1.0 187552 AGCACTGACTGTCAAAGCCAAGGCCACAAGCTCAGCGACAACGGCTGCTGCCCCGACACTGCGGCGCCTGGCGCTTTCCTCACGGTCTGGGCTTGAGAGGAAGCCGGAGTCCTTGTCTAAAGTCAGCATCATCAAGAGACTGGGCGCAGCTGCCCTTGTGCCCGAGGCCCAGGACAGCCAGGTCACCAGCACCAAGAGT|GAATACATCAAGACCTGGAGGCCACGGTACTTCCTGCTGAAGAGCGACGGCTCCTTCATTGGGTACAAGGAGAGGCCCGAGGCCCCTGATCAGACTCTACCCCCCTTAAACAACTTCTCCGTAGCAGAATGCCAGCTGATGAAGACCGAGAGGCCGCGACCCAACACCTTTGTCATACGCTGCC 15 0.597421775774454 0.5554203061908871 0.643123907615145 N Y 3.0867335950812698 3.87464452633266 3.0867335950812698 1 0.0 0.0 Y 0.0 N Y 1300 6795 ENSG00000160392 ENSG00000105221 + - 19 19 40854434 40791443 coding coding C19orf47 AKT2 40825443 40736224 - - 0.0 40827935 40762961 - + N - - N SA468 1 0.0 1.0 1 0 2 Y N 0.0 0.0 29 1.30876815968519 1.18381039569515 1.30876815968519 1.18381039569515 4 - - 0.9653627139723788 HCT116-unstranded 1.0 1686 CGTTACGGCCGAAAAGATGGCGGTCTTGGCACCTCTAATTGCTCTCGTGTATTCGGTGCCGCGACTTTCACGATGGCTCGCCCAACCTTACTACCTTCTGTCGGCCCTGCTCTCTGCTGCCTTCCTACTCGTGAGGAAACTGCCGCCGCTCTGCCACGGTCTGCCCACCCAACGCGAAGACGGTAACCCGTGTGACTTTGACTGG|AACGGCCGGTTTGTGGGCGATGCTGACCTTGAAAGACAGAAATTTTCAGATTTGAAACTCAACGGACCCCAGGATCACAGTCACCTTCTATATAGCACCATCCCCAGGATGCAGGAGCCGGGGCAGATTGTGGAGACCTACACGGAGGAGGATCCTGAGGG 47 1.0 0.665113671670465 0.8752525288819909 Y Y 3.41679307359967 3.48809356209009 3.41679307359967 0 0.9938057440723 0.0 Y 0.7893952984582059 N Y 2644 11832 ENSG00000213593 ENSG00000198561 + - 11 11 57508445 57587018 coding coding TMX2 CTNND1 57480072 57520715 + + 0.0 57480279 57561482 + - N - - N SA468 1 0.264150943396226 1.0 1 0 1 Y Y 0.0 0.264150943396226 17 1.37453540389047 1.04569918286404 1.37453540389047 1.04569918286404 4 - - 0.954848681442469 HCT116-unstranded 1.0 137890 CGCGACTCCGCGGTGCCCGCCCCCGTTGAGTTCAAAAGGACGCGCGGAGCGGCGCCGGCCCTTCACCAGCAGCCCGTCCGACTGGAAAGATCTGCCTCTTCTCCAAGAAACTCAACCACTAGTGACAATGACCAGCCTCCTGACTACTCCTTCTCCAAGAG|GTCATCGTGATGTCAGGTCATGAGACCATCCGAGTGCTGGAAGTCGGAGTGGATGCCCAACTCCCTGCTGAGGAAGAGAGCAAAGGACTGGAGGGTGTGGCCGCCGAGGGCTCCCAGAGCGGAGACCCTGCTGAAGCCAGTCAAGCTGCTGGTGAAGCTGGGCCAGACAACCTGGGCTCCTCTGCAGAGGCAACTGTATTGCAGGTCAAGTGG 9 0.812475400360244 0.437509882244561 0.204700402322309 Y Y 3.55760534744548 3.50120199000394 3.50120199000394 0 0.993805383022774 0.0 Y 0.0 N Y 955 682 ENSG00000170545 ENSG00000184271 + - 12 12 51664202 51611477 coding utr5p SMAGP POU6F1 51639133 51580719 - - 0.0 51663029 51598151 - + N - - N SA468 1 0.0 1.0 1 0 1 N Y 0.0 0.0 5 0.92731814329453 1.05227590728457 1.05227590728457 0.92731814329453 4 - - 0.978121803281098 HCT116-unstranded 1.0 30761 ATTTTATATCCCATGTTCTGGCTTTCTTTGCAGCAAGCGATGGCATAGTAAATGAAAACTTGGTGGAGCGATTTAGCCAAGAAGTTCAGATTACAGAAGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAACATACATTCTGAAATGTATAGTCTTCTTATTGACACTTACATAAAAGATCCCAAAGAA|AGTCTTCCAGGATCTCAACCAGTTCTCTCACTGCAGAGTCTGGAGAAGCCCAGCCCTCATTGTGAAGGGAGAGCCACCGTGGTGCTCACAGCAAGACACCCAGAGTCCCTTCCAGACAGGGACACCCCTGGAGCGACCCT 4 0.5440838520756279 0.4883575384848301 0.37298708630608 Y Y 3.4100068554845286 3.44991993872189 3.4100068554845286 1 0.992878464818763 0.0 Y 0.0 N Y 27660 1333 ENSG00000171848 ENSG00000163009 + - 2 2 10271545 10351851 coding coding RRM2 C2orf48 10262455 10281509 + + 0.0 10264977 10350437 + - N - - N SA468 3 0.0078125 2.2 2 5 5 N Y 0.0 0.0078125 5 1.08515952938722 0.8418207258276591 1.08515952938722 0.8418207258276591 4 - - 0.91132289275301 HCT116-unstranded CGHSA0554 1.0 30760 CAGAGATGAGGGTTTACACTGTGATTTTGCTTGCCTGATGTTCAAACACCTGGTACACAAACCATCGGAGGAGAGAGTAAGAGAAATAATTATCAATGCTGTTCGGATAGAACAGGAGTTCCTCACTGAGGCCTTGCCTGTGAAGCTCATTGGGATGAATTGCACTCTAATGAAGCAATACATTGAGTTTGTGGCAGACAGACTTATGCTGGAACTGGGTTTTAGCAAGGT|GCTGGGAGACCGTGAAGTGCAAAGCAGATGGAGTCCAGGCCCTCGGGGAGACAGCACGCCAGTGAGGGAGATGGAGACCAATCACCCACCCAGTGTGCGGGGATGAGAAGCTCGGGAAGGTCTGACCAGCCTTACGTCTTGAAAGGGAATCCCCTGCTTCTGCGTGTCAGGTGTTACTCGGGGTGCGCCAGTGGAAGCGGGAGGCAGTTGCAGC 274 0.767601465232975 0.782749520368208 0.555931712602966 Y Y 3.51360402781852 3.44040523365767 3.44040523365767 1 0.995337580151712 0.0 Y 0.3565860609362561 N Y 27660 1333 ENSG00000171848 ENSG00000163009 + - 2 2 10271545 10351851 coding utr5p RRM2 C2orf48 10262455 10281509 + + 0.0 10269281 10281981 + - N - - N SA468 2 0.508849557522124 1.29257641921397 1 67 5 N Y 0.0 0.508849557522124 229 1.4008423015725902 1.4337259236752298 1.4337259236752298 1.4008423015725902 4 - - 0.960361111010673 HCT116-unstranded CGHSA0554 1.0 104068 CTGATTCGCTCCATCAATGACCCGGAGCATCCACTGACGCTAGAGGAGTTGAACGTAGTAGAGCAGGTGCGGGTTCAGGTTAGCGACCCCGAGAGTACAGTGGCTGTGGCTTTCACACCAACCATTCCGCACTGCAGCATGGCCACCCTTATTGGTCTGTCCATCAAGGTCAAGCTTCTGCGCTCCCTTCCTCAGCGTTTCAAGA|CGGTCCCGGACGCGATGACCCTGAACGGCGGCGGCAGCGGAGCGGGCGGGAGCCGCGGTGGGGGCCAGGAGCGCGAGCGCCGTCGGGGCAGCACACCCTGGGGCCCCGCCCCGCCGCTGCACCGCCGCAGCATGCCGGTGGACGAGCGCGACCTGCAGGC 5 0.809115650615253 0.787583311954568 0.4793549066669229 Y Y 3.38912318237562 3.2739892081275896 3.2739892081275896 0 0.993767076502732 0.0 Y 0.981301229508197 N Y 2177 213 ENSG00000166595 ENSG00000166592 + - 16 16 66968326 66959547 coding utr5p FAM96B RRAD 66965959 66955582 - - 0.0 66967517 66959097 - + N - 12.9691647150664 N SA468 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 10 1.3153448841057198 1.1246198759103898 1.3153448841057198 1.1246198759103898 4 - 0.2 0.9824233951101858 HCT116-unstranded CGHSA0477 1.0 63915 AGATTTGTATTGAACGATGTCTTGAGAGGGGAAAGAGTAGTGGTAGGAGTGATGACAACAGAGAGAGCTTGGAAAAGAGAATTCAGACCTACCTTCAGTCAACAAAGCCAATTATTGACTTATATGAAGAAATGGGGAAAGTCAAGAAAATAGATGCTTCTAAATCTGTTGATGAA|ATTTCGAGTCTTCATTTCTGTCTTGCCTGGAGCACTTGCTAAGGGACTGGCCCAGAAGTACTCGGTGAGCAATGAAGCCTGAACTGAGGCCAGGAGAACTGAAGGAGGGATGGATCTGGGACCCATGTGGAATTGACGGGACTTGGCACTT 14 0.656010369874807 0.676322824330333 0.275874526294698 N Y 3.25360004855864 3.4378445805779303 3.25360004855864 6 0.0 0.0162534324018738 Y 0.0294580843159427 N N 3651 284 ENSG00000162368 ENSG00000186790 + - 1 1 47844511 47883723 coding upstream CMPK1 FOXE3 47799469 47881744 + + 0.0 47840965 47879778 + - N - - N SA468 1 0.8039215686274509 1.0 1 0 2 N N 0.0 0.8039215686274509 5 0.7365931350992009 0.966778489817702 0.966778489817702 0.7365931350992009 4 - - 0.958069970580303 HCT116-unstranded 1.0 63917 CAATGGCTGCCAATGCTCAGAAGAATAAATTCTTGATTGATGGGTTTCCAAGAAATCAAGACAACCTTCAAGGATGGAACAAGACCATGGATGGGAAGGCAGATGTATCTTTCGTTCTCTTTTTTGACTGTAATAATGAGATTTGTATTGAACGATGTCTTGAGAGGGGAAAGAGTAGTGGTAGGAGTGATGACAACAGAGAGAGCTTGGAAAAGAGAATTCAGACCTACCTTCAGTCAACAAAGCCAATTATTGACTTATATGAAGAAATGGGGAAAGTCAAGAAAATAGATGCTTCTAAATCTGTTGATGAA|ATTTCGAGTCTTCATTTCTGTCTTGCCTGGAGCACTTGCTAAGGGACTGGCCCAGAAGTACTCGGTGAGCAATGAAGCCTGAACTGAGGCCAGGAGAACTGAAGGAGGGATGGATCTGGGACCCATGTGGAATTGA 13 4.524563498946789e-05 0.714430160022438 0.229839784041797 N Y 3.25360004855864 3.4378445805779303 3.25360004855864 0 0.0 0.0168905699752183 Y 0.0168905699752183 N N 3651 284 ENSG00000162368 ENSG00000186790 + - 1 1 47844511 47883723 coding upstream CMPK1 FOXE3 47799469 47881744 + + 0.0 47840965 47879778 + - N - - N SA468 1 0.794642857142857 1.0 1 0 2 N N 0.0 0.794642857142857 6 0.920741418874002 0.7365931350992009 0.920741418874002 0.7365931350992009 4 - - 0.92777737360497 HCT116-unstranded 1.0 63916 AAGACCATGGATGGGAAGGCAGATGTATCTTTCGTTCTCTTTTTTGACTGTAATAATGAGATTTGTATTGAACGATGTCTTGAGAGGGGAAAGAGTAGTGGTAGGAGTGATGACAACAGAGAGAGCTTGGAAAAGAGAATTCAGACCTACCTTCAGTCAACAAAGCCAATTATTGACTTATATGAAGAAATGGGGAAAGTCAAGAAAATAGATGCTTCTAAATCTGTTGATGAA|CCCGCGCAAGTGGCAGAACAGCATCCGCCACAATCTCACGCTCAACGACTGCTTCGTCAAGGTGCCCCGCGAGCCGGGCAACCCGGGCAAGGGCAACTACTGGACGCTGGACCCCGCGGCCGCAGACATGTTCGACAACGGCAGCTTCCTGCGGCGCCGCAAGCGCTTCAAGCGCGCCGAGCTGCCCGCGCACGCGGCC 22 0.725250926124092 0.91328970148128 0.446846815991891 N Y 3.25360004855864 3.4823005609514905 3.25360004855864 1 0.0 0.0 Y 0.0 N N 3651 284 ENSG00000162368 ENSG00000186790 + - 1 1 47844511 47883723 coding coding CMPK1 FOXE3 47799469 47881744 + + 0.0 47840965 47882320 + - N - 0.263860733765758 N SA468 7 0.0761904761904762 1.7931034482758603 1 10 2 N N 0.0 0.0761904761904762 29 1.21669401779779 1.381112128311 1.381112128311 1.21669401779779 4 - 0.827586206896552 0.942556128672696 HCT116-unstranded 1.0 64182 GAAACAAAACAATCAGTGTGGATAAGAAATATTCAGCTTGGTTTCTTTGGAAGTATATTTGGATTAATGGGTGTATACATTTATGATGGAGAACTGGTATCAAAGAATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCA|GCCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTGGTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAACGGCTTAATTCAAGGAGTAAAGGGTTT 12 0.241212770724053 0.605042958864781 0.7979260981036921 N Y 3.73233517440054 3.6988816296077 3.6988816296077 0 0.0 0.0 Y 0.009395999374902209 N Y 1099 3367 ENSG00000117620 ENSG00000156875 + - 1 1 100492535 100548933 coding coding SLC35A3 HIAT1 100435345 100503653 + + 0.0 100480976 100515465 + - N - - N SA468 1 0.0 1.0 1 0 1 Y N 0.0 0.0 9 0.9996621119203448 1.07200608054616 1.07200608054616 0.9996621119203448 4 - - 0.934082599221938 HCT116-unstranded 1.0 127249 ACTATTCACACTACTTCCAGAAGGCCCGAGACACGCTCTACATGGTGTGGGGCCAGGGCAGGCACATGGACCGGGTGCTCGGCGGCCGCACCTACCGCACGCTGCTGCAGCTCACCAGGATGTACCCCGGCCTGCAGGTGTACACCTTCACGGAGCGCATGATGGCCTACTGCGACCAGATCTTCCAGGACGAGACGGGCAAGAACCG|GTGTGAACCCACATCCCTGCCCCCAGGGCCACCTGCAGGACGCCGACACCTACCCCTCAGCAGACGCCGGAGAGAAATGAGTAGCAACAAAGAGCAGCGGTCAGCAGTGTTCGTGATCCTCTTTGCCCTCATCACCATCCTCATCCTCTACAGCTCCAACAGTGCCAATGAGGTCTTCCATTACGGCTCCCTGCGGGGCCGTAGCCGCCGACCT 39 1.0 0.7817018378282641 0.5109247329257629 Y Y 3.54400240599166 3.20703807585194 3.20703807585194 1 0.0 0.0 Y 0.0 N Y 3079 1773 ENSG00000136840 ENSG00000160408 + - 9 9 130679317 130667687 coding coding ST6GALNAC4 ST6GALNAC6 130670165 130647600 - - 0.0 130674547 130658611 - + N - - N SA468 2 0.0138248847926267 1.54545454545455 1 24 1 Y Y 0.00952380952380952 0.0138248847926267 44 1.381112128311 1.4271491992547 1.4271491992547 1.381112128311 4 - - 0.945374978052632 HCT116-unstranded 1.0 193645 ATGAGCCCACGCCTCATCTTCCCCTGTGCACATGTTTACCTGATACAGCAGTGCTGCGTGTTGTACATACTTGGAACAACAAACTAGAAATACTGTACTTCTGTACCAACATTGCCTCCTAGCAGAGAAGTGTGTGTGTGACAAGCCAGTTCTACAGGCATTACCT|AGAGTGAAGACATTTCCACCTGGACACCTGACCATGTGCCTGCCCTGAGCAGCGAGGCCCACCAGGCATCTCTGTTGTGGGCAGCAGGGCCAGGTCCTGGTCTGTGGACCCTCGGCAGTTGGCAGGCTCCCTCTGCAGTGGGGTCTGGGCCTCGGCCCCACCATGTCGAGCCTCGGCGGTGGCTCCCAGGATGCCGGCGGCAGTAGCA 11 0.709730685952152 0.790737240966681 0.511177859148668 Y Y 3.6988816296077 3.47825217735525 3.47825217735525 0 0.993991967871486 0.0 Y 0.0 N Y 3826 1495 ENSG00000131508 ENSG00000171604 + - 5 5 139008018 139063467 utr3p utr5p UBE2D2 CXXC5 138906016 139026884 + + 0.0 139006642 139059949 + - N - - N SA468 2 0.0677966101694915 1.55555555555556 1 5 3 N Y 0.0 0.0677966101694915 9 1.0128155607614 1.16408022243356 1.16408022243356 1.0128155607614 4 - - 0.95345649678289 HCT116-unstranded 1.0 193646 CATTTACAACAAGAATTTATCATCCAAATATTAACAGTAATGGCAGCATTTGTCTTGATATTCTACGATCACAGTGGTCTCCAGCACTAACTATTTCAAAAGTACTCTTGTCCATCTGTTCTCTGTTGTGTGATCCCAATCCAGATGATCCTTTAGTGCCTGAGATTGCTCGGATCTACAAAACAGATAGAGAAAA|AGTGAAGACATTTCCACCTGGACACCTGACCATGTGCCTGCCCTGAGCAGCGAGGCCCACCAGGCATCTCTGTTGTGGGCAGCAGGGCCAGGTCCTGGTCTGTGGACCCTCGGCAGTTGGCAGGCTCCCTCTGCAGTGGGGTCTGGGCCTCGGCCCCACCATGTCGAGCCTCGGCGGTGGCTCCCAGGATGCCGGCGGCAGTAGCAGCAGCAGCACCAATGGCAGCGGTG 35 1.0 0.7240584073119 0.712940651868106 Y Y 3.58424216889964 3.47080361183081 3.47080361183081 1 0.994909907757014 0.0 Y 0.0 N Y 3826 1495 ENSG00000131508 ENSG00000171604 + - 5 5 139008018 139063467 coding utr5p UBE2D2 CXXC5 138906016 139026884 + + 0.0 139003046 139059949 + - N - - N SA468 3 0.161434977578475 1.07142857142857 1 1 3 Y Y 0.0 0.161434977578475 28 1.2956147108441298 1.46660954577787 1.46660954577787 1.2956147108441298 4 - - 0.970136905164078 HCT116-unstranded 1.0 193693 CCTCCCACCATGGCTCTGAAGAGAATCCACAAGGAATTGAATGATCTGGCACGGGACCCTCCAGCACAGTGTTCAGCAGGTCCTGTTGGAGATGATATGTTCCATTGGCAAGCTACAATAATGGGGCCAA|GTGAAGACATTTCCACCTGGACACCTGACCATGTGCCTGCCCTGAGCAGCGAGGCCCACCAGGCATCTCTGTTGTGGGCAGCAGGGCCAGGTCCTGGTCTGTGGACCCTCGGCAGTTGGCAGGCTC 2 0.00101814283220807 0.688123136861374 0.910940386010602 Y Y 3.61720120015252 3.47080361183081 3.47080361183081 3 0.992094373417331 0.0 Y 0.0 N Y 3826 1495 ENSG00000131508 ENSG00000171604 + - 5 5 139008018 139063467 coding utr5p UBE2D2 CXXC5 138906016 139026884 + + 0.0 138994202 139059949 + - N - - N SA468 1 0.027027027027027 1.0 1 0 3 N Y 0.0 0.027027027027027 8 0.6708258908939161 0.730016410678673 0.730016410678673 0.6708258908939161 4 - - 0.9262576365822592 HCT116-unstranded 1.0 149168 TGTGTATAGTTATAAATATCAACATGATGATGGAAGAGTTTCATATCCTCTGTGCTTTATTTTCTCCAGTCCTGTTGGATGTAAGCCTGAACAACAGATGATGTATGCTGGAAGTAAGAATAAGCTAGTCCAGACAGCTGAACTAACCAAG|ATTATAGCATTTGATGAGCTGAAGACTGATTACAAGAATCCTATAGACCAGTGTAATACCCTGAATCCCCTTGTACTCCCAGAGTACCTCATCCACGCTTTCTTCTGTGTCATGTTTCTTTGTGCAGCAGAGTGGCTTACACTGGGTCTCAATATGCCCCTCTTGGCATATCATATTTGGAGGTATATGAGTAGACCAGTGATGAGTGGCCCAGGACTCTATGACCCTACAAC 10 1.0 0.5976589598152111 0.5957750194453779 N Y 3.4309786568760896 3.3733608154261803 3.3733608154261803 1 0.0 0.0 Y 0.0 N Y 2353 4888 ENSG00000197045 ENSG00000100528 + - 14 14 54955914 54908149 coding coding GMFB CNIH 54941202 54893654 - - 0.0 54946504 54903155 - + N - - N SA468 1 0.0 1.0 1 0 3 Y N 0.0 0.0 7 0.92731814329453 1.36138195504942 1.36138195504942 0.92731814329453 4 - - 0.99106900891372 HCT116-unstranded 1.0 148930 GGAGGCGGCCGCCGTGCCATTCTTAAAGGCGCCCGAGTGTAGGCGACAGGCCGCTGACGGCCGGAAGGAAAATGAGTGAGTCTTTGGTTGTTTGTGATGTTGCCGAAGATTTAGTGGAAAAGCTGAGAAAGTTTCGTTTTCGCAAAGAAACGAACAACGCTGCTATTATAAG|TATATGAGTAGACCAGTGATGAGTGGCCCAGGACTCTATGACCCTACAACCATCATGAATGCAGATATTCTAGCATATTGTCAGAAGGAAGGATGGTGCAAATTAGCTTTTTATCTTCTAGCATTTTTTTACTACCTATATGGCATGATCTATGTTTTGGTGAGCTCTTAGAACAACACACAGAAGAATT 13 1.0 0.859276546727842 0.803204725379747 N Y 3.49744043328497 3.4682429587510697 3.4682429587510697 0 0.0 0.00275482093663904 Y 0.008552758024216841 N Y 2353 4888 ENSG00000197045 ENSG00000100528 + - 14 14 54955914 54908149 coding coding GMFB CNIH 54941202 54893654 - - 0.0 54950389 54897122 - + N - - N SA468 2 0.0 1.09090909090909 1 1 3 N N 0.0 0.0 11 1.1048897026488 1.1246198759103898 1.1246198759103898 1.1048897026488 4 - - 0.979865593790381 HCT116-unstranded 1.0 187042 ACAAATTCATGAAGCGAATTGCTGCTTGTCAGGAGCAGATTTTGAGGTATTCCTGGAGTGGAGAGCCACTCTTTTTGACCTGCCCTACATCAGAAGTCACCGAGCTCCCAGCCTGCAGCCAGTGTGGAGGCCAAAGGATATTTGAGTTTCAGCTTATGCCAGCACTGGTCAGCATGCTCAAGAGTGCTAATTT|AGCTGCCCGAAACCATGTTAATAGAATGTGCCTGGCAGCTGATGTTCCTCTTATTGAAAGTGGAACAGCTGGGTATCTTGGACAAGTAACTACTATCAAAAAGGGTGTGACCGAGTGTTATGAGTGTCATCCTAAGCCGACCCAGAGAACCTTTCCTGGCTGTACAATTCGTAACACACCTTCAGAACCTATA 14 0.8873492496817629 0.9943547249045458 0.250970949877763 Y Y 3.64400585547602 3.60426060610801 3.60426060610801 0 0.994832041343669 0.0 Y 0.0 N Y 1244 2460 ENSG00000126249 ENSG00000126261 + - 19 19 34917287 34960853 coding coding PDCD2L UBA2 34895289 34919264 + + 0.0 34912572 34925773 + - N - - N SA468 2 0.0 1.23529411764706 1 4 1 Y Y 0.0 0.0 17 1.26930781316202 1.2364241910593703 1.26930781316202 1.2364241910593703 4 - - 0.939144324002054 HCT116-unstranded 1.0 62791 CTTTGGCATCCGGAGAAATGAAAAGATTGCTGTCCACTGCACAGTTCGAGGGGCCAAGGCAGAAGAAATCTTGGAGAAGGGTCTAAAGGTGCGGGAGTATGAGTTAAGAAAAAACAACTTCTCAGATACTGGAAACTTTGGTTTTGGGATCCAGGAACACATCGATCTGGGTATCAAATATGACCCAAGCATTGGTATCTACGGCCTGGACTTCTATGT|GCTATTGAAATATTTGAAGAAACTCTCCACCCTGCCTATTACAGTAGACATTCTTGCGGAGACTGGGGTTGGGAAAACAGTAAATAGCTTGCGAAAACACGAGCATGTTGGAAGCTTTGCCAGGGACCTAGTGGCCCAGTGGAAGAAGCTGGTTCCTGTGGAACGAAATGCTGAGCCTGATGAACAGGACTTTGAGAAGAGCA 312 0.465339599117755 0.8349850376867479 0.55465462578602 N Y 3.8097595335968 3.3551310813528503 3.3551310813528503 1 0.995085537271891 0.0 Y 0.8918818199816001 N Y 32495 11957 ENSG00000142676 ENSG00000011007 + - 1 1 24022915 24088549 coding coding RPL11 TCEB3 24018269 24069645 + + 0.0 24021281 24075511 + - N - - N SA468 4 0.0 2.27692307692308 1 222 2 Y N 0.0 0.0 325 1.46660954577787 1.4863397190394598 1.4863397190394598 1.46660954577787 4 - - 0.920426321338407 HCT116-unstranded CGHSA0320 1.0 1760 TCTTCATCATCCAGGATATTGCAGTCCTCTTCAACATCATCATCATTTTCCTCATGTTCTTCAACACCTTCGTCTTCCAGGCTGGCCTGGTCAACCTCCTATTCCATAAGTTCAAAGGGACCATCATCCTGACAGCTGTGTACTTTGCCCTCAGCATCTCCCTTCATGTCTGGGTCATGAACTTACGCTGGAAAAACTCCAACAGCTTCATATGGACAGATGGACTTCAAATGCTGTTTGTATTCCAGAGACT|AGGTAAACGGTTGTCCTCCACCCCGCTGGAAATCCTGTTCTTTCTGAACGGGTGGTATAATGCTACCTATTTCCTGCTGGAACTTTTCATATTTCTGTATAAAGGTGTCCTGCTACCATATCCAACAGCTAACCTAGTACTGGATGTGGTGATGCTCCTCCTTTATCTTGGAATTGAAGTAATTCGCCTGTTTTTTGGTACAAAGGGAAACCTCTGCCAGCGAAAGATGCCGCTCAGTATTAGCGTGGCCT 15 3.0017691409832504e-11 0.823379314348522 0.165773273241599 Y Y 3.62617734898681 3.6000045358490698 3.6000045358490698 0 0.0 0.0 Y 0.0 N Y 1627 648 ENSG00000149483 ENSG00000187049 + - 11 11 61136683 61166335 coding utr5p TMEM138 TMEM216 61129473 61159159 + + 0.0 61135470 61160703 + - N - - N SA468 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 9 1.1509267735925 0.9602017653971732 1.1509267735925 0.9602017653971732 4 - - 0.925148766040923 HCT116-unstranded 1.0 1759 CAACACCTTCGTCTTCCAGGCTGGCCTGGTCAACCTCCTATTCCATAAGTTCAAAGGGACCATCATCCTGACAGCTGTGTACTTTGCCCTCAGCATCTCCCTTCATGTCTGGGTCATGAACTTACGCTGGAAAAACTCCAACAGCTTCATATGGACAGATGGACTTCAAATGCTGTTTGTATTCCAGAGACT|AGGTAAACGGTTGTCCTCCACCCCGCTGGAAATCCTGTTCTTTCTGAACGGGTGGTATAATGCTACCTATTTCCTGCTGGAACTTTTCATATTTCTGTATAAAGGTGTCCTGCTACCATATCCAACAGCTAACCTAGTACTGGATGTGGTGATGCTCCTCCTTTATCTTGGAATTGAAGTAATTCGCCTGTTTTTTGGTACAAAGGGAA 15 0.28733647245026195 0.823379314348522 0.165773273241599 Y Y 3.62617734898681 3.6000045358490698 3.6000045358490698 0 0.0 0.0 Y 0.0 N Y 1627 648 ENSG00000149483 ENSG00000187049 + - 11 11 61136683 61166335 coding utr5p TMEM138 TMEM216 61129473 61159159 + + 0.0 61135470 61160703 + - N - - N SA468 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 16 1.2364241910593703 1.3548052306288898 1.3548052306288898 1.2364241910593703 4 - - 0.962345737301544 HCT116-unstranded 1.0 1761 TACATGGCTGTCATGTTTACCCTCTTTGGTCTTAACTTATTATTCAAGATCAAACCAGAAGATGCCATGGACTTTGGCATCTCCCTTCTCTTCTATGGCCTCTACTATGGAGTTCTGGAACGGGACTTTGCAGAAATGTGTGCAGACTACATGGCATCTACCATAGG|GAGAAGAGGACGTTGTCACAGATAAAGAGCCAGGCTCACCAGCTCCTGACGCATGCATCATGACCATGAGACACAACTGGACACCAGACCTCAGCCCTTTGTGGGTCCTGCTCCTGTGTGCCCACGTCGTCACTCTCCTGGTCAGAGCCACACCTGTCTCGCAGACCACCACAGCTGCCACTGCCTCAGTTAGAAGCACAAAGGACCCCTG 20 1.0 0.698738003214518 0.4598910194652461 Y Y 3.65657572715995 3.61356762450953 3.61356762450953 0 0.0 0.0 Y 0.0 N Y 625 758 ENSG00000137522 ENSG00000137496 + - 11 11 71708643 71716761 coding utr5p RNF121 IL18BP 71639747 71709587 + + 0.0 71701763 71710973 + - N - - N SA468 1 0.0 1.0 1 0 1 N Y 0.0 0.0 12 1.13777332475144 1.2956147108441298 1.2956147108441298 1.13777332475144 4 - - 0.977405917604421 HCT116-unstranded 1.0 187502 GGCCTGAAGTCAGGGCCGGAGGAGCAGCCTCGGGACACAGCCAGCCCTGTCCCTGCCTAGCCTTTAGCCCTGTCCCCACTCACGTGGCTTCTCAGCGGGCTGCATGGAATGTCTGGTAGCTCACCACACTTCTGGCTTCCATTTGTCTTCACTCAACGTCAGGGTGGGGGAGTGGTGCTGGCCAATCACAGGAGAGAGC|CTGTTCCCACAGGCTCCATTATTCAAACTTTGGGGGAGGAAATCAGGGCTGGACAGATCATCAACTGCTGCTGCTGACAGACTGTGTTCCTGCCATGATGGGGACAGGCCTGCCCCAAACCAGGGTGGAGTGAAGGGGTCAGCCCAGGCTTAGTGGGAGCCCCTTAGTCTTACCCCATGTCTTGGGAGGTCTTCAGAGAG 16 0.994159203214413 0.623390005576334 0.489144632343649 Y Y 3.22423474015539 3.44086924197409 3.22423474015539 0 0.0 0.0 Y 0.0 N N 4827 244 ENSG00000105341 ENSG00000177191 + - 19 19 41946622 41934635 utr3p utr5p ATP5SL B3GNT8 41937223 41931265 - - 0.0 41937997 41934624 - + N - 20.6457326892109 N SA468 1 0.0 1.0 1 0 1 N Y 0.0 0.0 11 1.3350750573673 1.2561543643209598 1.3350750573673 1.2561543643209598 4 - 0 0.9760567640080609 HCT116-unstranded 1.0 50777 CAGGTTGGGCAGCTTTACTCTGTTGCAGAAGCTAGTAAGAATGAGACTGGTGGTGGAGAAGGAATTGAAGTCTTAAAGAATGAACCTTATGAGAAGGATGGAGAAAAGGGACAGTATACGCACAAAATTTATCACCTAAAG|AGCCCACGACCTCCCTGCAAACAAGGCCTCAGCATCCCAGCCTGGCAGCCACTTGCAGTGCCTGTCTGTCCACTGCACAGACGACGTGGGTGACGCCAAGGCTCGAGCCTCCGTGCCCACCTGGCGGTCCCTGCATTCTGACATCTCCAACAGATT 2 0.331098782013096 0.9017034957252372 0.968525124511498 Y Y 3.31638839653118 3.22064101730576 3.22064101730576 0 0.0 0.0104241039554476 Y 0.0104241039554476 N Y 2252 2206 ENSG00000180957 ENSG00000169184 + - 22 22 28316122 28197486 coding intron PITPNB MN1 28202413 28144265 - - 0.0 28306952 28147084 - + N - 2.04973865760665 N SA468 1 0.0 1.0 1 0 2 N Y 0.0 0.0 7 0.664249166473387 0.887857796771359 0.887857796771359 0.664249166473387 4 - 17 0.975380737310463 HCT116-unstranded 1.0 50778 ACATTAGAAAATGTACATGGTTTAGATCCAAACACATGGAAAACTGTTGAAATTGTCCATATAGATATTGCAGATAGAAGTCAAGTTGAACCAGCAGACTACAAAGCTGATGAAGACCCAGCATTATTCCAGTCAGTCAAGACCAAGAGAGGCCCTTTGGGACCCAACTGGAAG|CCCACGACCTCCCTGCAAACAAGGCCTCAGCATCCCAGCCTGGCAGCCACTTGCAGTGCCTGTCTGTCCACTGCACAGACGACGTGGGTGACGCCAAGGCTCGAGCCTCCGTGCCCACCTGGCGGTCCCTGCATTCTGACATCTCCAACAGATTTGGGACATTCGTGGCTGCCCTAACTTGAATG 6 0.0826859797461766 0.701182225726969 0.5120284996982161 Y Y 3.2525669787887503 3.2038455805864303 3.2038455805864303 0 0.0 0.0 Y 0.0 N Y 2252 2206 ENSG00000180957 ENSG00000169184 + - 22 22 28316122 28197486 coding coding PITPNB MN1 28202413 28144265 - - 0.0 28269726 28147084 - + N - 2.04787988627014 N SA468 1 0.0 1.0 1 0 2 N Y 0.0 0.0 7 0.947048316556116 0.7037095129965579 0.947048316556116 0.7037095129965579 4 - 17.2857142857143 0.964892251483652 HCT116-unstranded 1.0 193591 AGAAGTATGTAGAGCAATCAAACAATTGGATTATGAATGGAAGGTTGTAAACCCATATTATTTGCGTGTACGAAGGAAGAATCCTGTGACAAGCACTTACTCCAAAATGAGTCTACAGTTATACCAAGTGGATAGTAGAACTTATCTACTGGATTTCCGTAGTATTGATG|AATGGCTTCCTTTGGGTGGAAGAGGAAAATTGGTGAGAAGGTCTCAAAGGTCACTTCCCAGCAGTTTGAAGCTGAAGCTGCTGATGAGAAGGATGTAGTTGACAACGATGAAGGGAACTGGCTTCATGCCATTAAACGTAGGAAAGAAATTCTTCTTGAAGGCTGTGCTGAGAAAAGTAAACAGCTGAAGGATGAAGGAGCCAGTTTGGCTGAA 10 0.656898292864704 0.8578876809548679 0.343091959117776 Y Y 3.53721618787652 3.20720590972129 3.20720590972129 0 0.994132925897632 0.0 Y 0.0 N Y 1181 296 ENSG00000132356 ENSG00000113638 + - 5 5 40798476 40756077 coding utr5p PRKAA1 TTC33 40759481 40714577 - - 0.0 40764616 40747121 - + N - - N SA468 1 0.0 1.0 1 0 1 N Y 0.0 0.0 11 1.11804315148986 1.26930781316202 1.26930781316202 1.11804315148986 4 - - 0.9612830242761652 HCT116-unstranded 1.0 137887 CAGGGGATCAGTTTGACGATGCAGTGTCCTTGAGACCAAGCAAACCAGGAGCCATCTGGGGAGAAGGCGACGCTCCAGGTTTCACAGCTGGACTTCCAATCAAACTGGTGGGGGCGCCCGGGCTTGAGTTCGGCCAGCAGCAGCGGTTCCT|CTTGAAGATCCTGGAATCCATTTCCCATCTGTTCTATGTTCCCATTCACCAAGGCGGTCACTCTGTGAATGTGGTCCTGCTTAGGTATTTCTTTTGGCAACTCCTCTCTCTCACGTGCTCCCTCCTGTTCCCCTACTGCAGCATCTTCCTCCTCCTCCTCCTCCTCCTCCTCTTCCTCTTCTGAATCCACCAAAACCATGAC 8 1.0 0.579119030282366 0.59545070780813 Y Y 3.2399572543114705 3.40591861909494 3.2399572543114705 0 0.0 0.0 Y 0.0 N Y 5030 1364 ENSG00000176871 ENSG00000176834 - + 12 12 118500235 118573831 coding coding WSB2 VSIG10 118470712 118501398 - - 0.0 118490283 118506182 + - N - 1.27194816894478 N SA468 1 0.202127659574468 1.0 1 0 1 Y Y 0.0 0.202127659574468 5 0.993085387499816 1.09831297822827 1.09831297822827 0.993085387499816 4 - 15.8 0.983621890693845 HCT116-unstranded 1.0 29851 AGTCAACATTTCCCCAAGCCTCCACTCCAGCTCTCCACTGGATATCAGCATCAAAGGCCAGATGATTCGTGACCTTCTGAATCTGGCAGGTTTTGTCCTGCCCAATGCAGAGGATATCATTTCCAGCCCCAGCAGCTGCAGCAGCTCCACCACCAG|GTGCTTTACAAGGCCAAGTACGGTCCAATGTGGATGTCCTACTTAGGGCCTCAGATGCACGTGAACCTGGCCAGTGCCCCGCTCTTGGAGCAAGTGATGCGGCAAGAGGGCAAGTACCCAGTACGGAACGACATGGAGCTATGGAAGGAGCACCGGGACCAGCACGACCTGACCTATGGGCCGTTCACCACGGAAGGAC 6 0.825784648199374 0.6390688336382491 0.487971500301784 Y Y 2.8652908864045696 3.80041266240192 2.8652908864045696 0 0.0 0.0 Y 0.0 N Y 1864 211 ENSG00000135912 ENSG00000135929 + - 2 2 219620139 219680016 coding coding TTLL4 CYP27A1 219575568 219646472 + + 0.0 219614869 219674300 + - N - - N SA468 1 0.0 1.0 1 0 3 Y Y 0.0 0.0 8 0.822090552566073 0.97335521423823 0.97335521423823 0.822090552566073 4 - - 0.9809048068007892 HCT116-unstranded 1.0 29850 TTCTCGCCGTGGTCAGTTTGAACGAATTTTTCCTTCTCATATCTCCTCTCGCTATCTCCGCTTTTTTGAGCAGCCACGATATTTCAACATTCTCACCACCCAATGGGAACAGAAATACCATGGCAACAAGCTTAAAGGAGTAGATCTGCTCCGGAGTTGGTGCTACAAAGGGTTCCACATGGGAGTTGTCTCTGATTCTGCTCCAG|TGGTGCTTTACAAGGCCAAGTACGGTCCAATGTGGATGTCCTACTTAGGGCCTCAGATGCACGTGAACCTGGCCAGTGCCCCGCTCTTGGAGCAAGTGATGCGGCAAGAGGGCAAGTACCCAGTACGGAACGACATGGAGCTATGGAAGGAGCACCGGGACCAGCACGACCTGACCTATGGGCCGTT 3 0.138126725956471 0.971786217823063 0.19403860668448705 Y Y 3.4780843434859 3.74656995804013 3.4780843434859 0 0.0 0.0 Y 0.0 N Y 1864 211 ENSG00000135912 ENSG00000135929 + - 2 2 219620139 219680016 coding utr5p TTLL4 CYP27A1 219575568 219646472 + + 0.0 219617908 219674300 + - N - - N SA468 1 0.0 1.0 1 0 3 Y Y 0.0 0.0 7 1.20354056895673 1.09173625380775 1.20354056895673 1.09173625380775 4 - - 0.923528963260336 HCT116-unstranded 1.0 29573 AAGCTGCTGACCCTGCCCTTTGCTTTCTTTCTGGCCTCTGCCGTAGCCTGCCCACCTCCCCTGGGGACAAATGTCGAATGGCTCCAGAGCATGTCACTGCACAGAAGATGAAGAAAGCCTATTATCTGACCCAGAAAATTCCTGATCAGGT|GCTTTACAAGGCCAAGTACGGTCCAATGTGGATGTCCTACTTAGGGCCTCAGATGCACGTGAACCTGGCCAGTGCCCCGCTCTTGGAGCAAGTGATGCGGCAAGAGGGCAAGTACCCAGTACGGAACGACATGGAGCTATGGAAGGAGCACCGGGACCAG 1 0.8840318160057521 0.587431859957644 0.7032466630265238 Y Y 3.57063922744582 3.83489927696465 3.57063922744582 0 0.0 0.0 Y 0.0296102903718797 N Y 1864 211 ENSG00000135912 ENSG00000135929 + - 2 2 219620139 219680016 intron coding TTLL4 CYP27A1 219575568 219646472 + + 0.0 219616529 219674300 + - N 2.60301772596489 0.336766025503574 N SA468 1 0.0 1.0 1 0 3 Y Y 0.0 0.0 6 0.966778489817702 1.0588526317051 1.0588526317051 0.966778489817702 4 7.33333333333333 0.166666666666667 0.987611075469678 HCT116-unstranded 1.0 187545 AGGCCTTCTCGAAGCCCATCCTGGACCTGGGGGCTGAGGCACTCATCATGCAGGCCCGATCTGCCCACCGTGACTGTGAGGACGTGGCCAAGGCCGCCCTGCGGGACCTGGGTTGTCATGTCGAGCTCCGAGAGCTGTGGACAGGCCAGAGGGGCAACCTGGCGCCATGACCCCAGGCCCAGTCTGGGCCGTGACTCTGGG|ACCGAGTCTCCTGCCATTCCGAGCAGGCCTGGTATGGGTAATGGTGTGAAGGAAGGCCCGGTGCGATTGCATGAGGATGCTGAGGCTGTCCTGTCCTCGTCCGTCTCATCAAAGCGTGACCACAGGCAAGTGCTCAGCTCCCTGCTGTCTGGGGCCCTGGCTGGTGCCCTTGCCAAAACAGCGGTAGCTCCCCTGGAC 14 0.316206027569359 0.5665381050045171 0.8502895496167371 Y Y 3.3619172994679904 3.7423443930047298 3.3619172994679904 1 0.0 0.0 Y 0.0025000000000000603 N Y 3467 588 ENSG00000105676 ENSG00000181035 + - 19 19 19170563 19223704 utr3p utr5p ARMC6 SLC25A42 19144384 19174803 + + 0.0 19168467 19206900 + - N - - N SA468 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 19 1.26273108874149 1.2890379864236 1.2890379864236 1.26273108874149 4 - - 0.933521697671405 HCT116-unstranded 1.0 41389 ATTGACCGCTACCCCCGCAAAGTGACAGCTGCCATGGGCAAGAAGAAGATCGCCAAGAGATCAAAGATAAAATCTTTTGTGAAAGTGTATAACTACAATCACCTAATGCCCACAAGGTACTCTGTGGATATCCCCTTGGACAAAACTGTCGTCAATAAGGATGTCTTCAGAGATCCTGCTCTTAAACGCAAGGCCCGACGGGAGGCCAAGGTCAAGTTTGAAGAGAG|GCCCTCCACGCCCTTCAGGAGGAGCAGGCCAGACTCAAGATGAGGCTGTGGGACCTGCAGCAGCTGAGAAAGGAGCTCGGGGACTCCCCCAAAGACAAGGTCCCATTTTCAGTGCCCAAGATCCCCCTGGTATTCCGAGGACACACCCAGCAGGACCCGGAAGTGCCTAAGTCTTTAGTTTCCAATTTGCGGATCCACTGCCCTCTGCTTGC 111 1.0 0.912180133869908 0.627494325498759 Y Y 3.2693225627147204 3.28655907981151 3.2693225627147204 0 0.0 0.0 Y 0.0 N Y 20787 893 ENSG00000131469 ENSG00000068079 + - 17 17 41154976 41166473 coding coding RPL27 IFI35 41150290 41158742 + + 0.0 41154800 41164196 + - N - - N SA468 5 0.0 1.69503546099291 1 67 3 N Y 0.0 0.0 141 1.52580006556263 1.4468793725162898 1.52580006556263 1.4468793725162898 4 - - 0.9573260766392292 HCT116-unstranded 1.0 41218 TATAACTACAATCACCTAATGCCCACAAGGTACTCTGTGGATATCCCCTTGGACAAAACTGTCGTCAATAAGGATGTCTTCAGAGATCCTGCTCTTAAACGCAAGGCCCGACGGGAGGCCAAGGTCAAGTTTGAAGAG|AGGCCCTCCACGCCCTTCAGGAGGAGCAGGCCAGACTCAAGATGAGGCTGTGGGACCTGCAGCAGCTGAGAAAGGAGCTCGGGGACTCCCCCAAAGACAAGGTAAGGTGGGAGATCTGGTGTTGTTTGGTAAAAACGAGCTGGCGAGGCCGGGTGCGGTGGCTCACACCTGTAAACCCAGCACTTTGGTAGGCC 57 1.0 0.89886146323793 0.594938434243148 Y Y 3.3461549325185493 3.28655907981151 3.28655907981151 0 0.0 0.0 Y 0.0 N Y 20787 893 ENSG00000131469 ENSG00000068079 + - 17 17 41154976 41166473 coding intron RPL27 IFI35 41150290 41158742 + + 0.0 41154800 41164196 + - N - 0.31880536560448 N SA468 5 0.2822580645161289 2.19047619047619 1 12 3 N Y 0.0 0.2822580645161289 21 0.874704347930302 0.8155138281455441 0.874704347930302 0.8155138281455441 4 - 2.95238095238095 0.96236706512255 HCT116-unstranded 1.0 41338 TGGAAGTAGGGGAGGGGAGTAGGAGTGTTCCTCACTCCCACCTAGGAGGAAGGCATCTCCGATTCCATTCCATTGATGCTGAGTGCCGGAGATAAATACATTTACTTGTCTTTGGGGGAGTCCCCGAGCTCCTTTCTCAGCTGCTGCAGGTCCCACAGCCTCATCTTGAGTCTGGCCTGCTCCTCCTGAAGGGCGTGGAGGG|CCTCTCTTCAAACTTGACCTTGGCCTCCCGTCGGGCCTTGCGTTTAAGAGCAGGATCTCTGAAGACATCCTTATTGACGACAGTTTTGTCCAAGGGGATATCCACAGAGTACCTGGGGACAAAGGTGGAGA 98 0.909766871676998 0.8228561248798629 0.6948696948327309 Y Y 3.369767092576549 3.2474058198359104 3.2474058198359104 0 0.0 0.0 Y 0.0 N Y 893 20787 ENSG00000068079 ENSG00000131469 - + 17 17 41166473 41154976 coding intron IFI35 RPL27 41158742 41150290 + + 0.0 41164196 41154800 - + N - 0.718238115130585 N SA468 2 0.0 1.3 1 3 3 N Y 0.0 0.0 10 1.1246198759103898 0.60505864668863 1.1246198759103898 0.60505864668863 4 - 337.3 0.97055304006782 HCT116-unstranded 1.0 193452 GTGTCACAGTCTGGCCAAGGAAATGAAATTGGGAGTTGCTGTGTGGAAACTCAACTCTCTGGAACTTCTTCCTTCCTCCTGCCTCTGCACAAATGTGACGGCAGCAGCTGAAGCCAACATCTTGCGACCATGAGAGAAAAACCTGGAGAACGGACGAGTCCTCAACCCTGACTTCAGACCAACCTACACCCACCTCTGGACGTGGGGCTAA|TAGAGACGTCATCTAAGAGGAGCTTGCAAGTCCAGAGGGCTTCCTGAAGGAAGTGAGCTGAGAATAATATGAAATTAACCAGACCAAGGGCCATTCCAGGAAGAGAGAATGGTACGTGAAACTGCCCAGGAG 4 0.837929486648484 0.26425940504080503 0.6422381155221341 Y Y 3.53039946453785 3.61464054707277 3.53039946453785 0 0.0 0.00290697674418605 Y 0.0406756518675123 N N 600 5635 ENSG00000113761 ENSG00000160867 + - 5 5 176508190 176525145 utr3p upstream ZNF346 FGFR4 176449697 176513887 + + 0.0 176506605 176513157 + - N - - N SA468 1 1.0 1.0 1 0 1 N Y 0.31972789115646305 1.0 5 0.966778489817702 0.6247888199502161 0.966778489817702 0.6247888199502161 4 - - 0.974186983581682 HCT116-unstranded 1.0 149422 GAACGTCGAATTAGACCATGGATTAATAAGAAAATCATAGAATATATAGGTGAAGAAGAAGCTACATTAGTTGATTTTGTTTGTTCTAAGGTTATGGCTCATAGTTCACCCCAGAGCATTTTAGATGATGTTGCCATGA|CCTAATCTGGGAGCCTGCAAGTGACAACAGCCTTTGCGGTCCTTAGACAGCTTGGCCTGGAGGAGAACACATGAAAGAAAGAACCTCAAGAGGCTTTGTTTTCTGTGAAACAGTATTTCTATACAGTTGCTCCAATGACAGAGTTACCTGCACCGTTGTCCTACTTCCAGAATG 13 0.5000546576793511 0.7599435782980258 0.863651478978965 Y Y 3.3227106063299 3.7061623612628 3.3227106063299 0 0.0 0.0 Y 0.0 N Y 12592 2884 ENSG00000119707 ENSG00000080815 + - 14 14 73588122 73690399 intron utr5p RBM25 PSEN1 73525144 73603126 + + 0.0 73581041 73614503 + - N - - N SA468 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 11 0.8418207258276591 1.13777332475144 1.13777332475144 0.8418207258276591 4 - - 0.975380737310463 HCT116-unstranded 1.0 149423 CAAACCTGAGCTCTTCGCTTATCCCCTGGATTGGTCTATTGTGGATTCTATACTGATGGAACGTCGAATTAGACCATGGATTAATAAGAAAATCATAGAATATATAGGTGAAGAAGAAGCTACATTAGTTGATTTTGTTTGTTCTAAGGTTATGGCTCATAGTTCACCCCAGAGCATTTTAGATGATGTTGCCATG|AATGACAATAGAGAACGGCAGGAGCACAACGACAGACGGAGCCTTGGCCACCCTGAGCCATTATCTAATGGACGACCCCAGGGTAACTCCCGGCAGGTGGTGGAGCAAGATGAGGAAGAAGATGAGGAGCTGACATTGAAATATGGCGCCAAGCATGTGATCATGCTCTTTGTCCCTGTGACTCTCTGCATGGTGGTGGTA 25 1.0 0.477765471852755 0.527394275558615 Y Y 3.35463656781289 3.23693259291531 3.23693259291531 0 0.0 0.0 Y 0.0 N Y 12592 2884 ENSG00000119707 ENSG00000080815 + - 14 14 73588122 73690399 coding coding RBM25 PSEN1 73525144 73603126 + + 0.0 73581041 73637505 + - N - - N SA468 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 22 1.2956147108441298 1.3416517817878302 1.3416517817878302 1.2956147108441298 4 - - 0.98309527489534 HCT116-unstranded 1.0 137197 ACCACATAAGGACTTCCTTCTATCAGCCATCTTCCAAAATGCACCTGGCAGCCATGCTTATTCATTGCGTCCACTGCTCTTCTGACAGCATCATTTACAGGTTCACACTGTTCCACCTGAGTCTTCATATTATGCTCAAAATATGGACCTATCAGAAAATAGTTCTCTCCCCATTCATCTGCTGTTGTTTTGGCCTTTGTCTGAATCACAGTATAGATGCCTCCAA|CTTAGCCTGAAATATAAGTTGATGTTTTTTCTCCAAGTTGTTGTCATCCGTTGACTTTGCTTGTGTTATGTTTTCAGGTAAGAAGTTCTCTTTTTCAGTGGTTAAATTGAACCAATCCTTTCTTTAATGGCTCTAGATATGG 15 0.7780677829631459 0.511641697265349 0.389542437018536 Y Y 3.69937614314766 3.39065076568547 3.39065076568547 0 0.0 0.0167563647467461 Y 0.0 N N 419 58947 ENSG00000111713 ENSG00000111716 - + 12 12 21757781 21910791 coding downstream GYS2 LDHB 21689123 21788276 - - 0.0 21733457 21783595 + - N - - N SA468 1 0.0 1.0 1 0 1 N Y 0.0 0.0 9 1.32849833294677 0.8944345211918872 1.32849833294677 0.8944345211918872 4 - - 0.984280694329447 HCT116-unstranded 1.0 164345 CGTCGCCACGGTGGCGGCCACTGCATCGCGTCCCACCTCCGCGGCCCTGGGCGCCGTGGTGTCGACGGGCCCCGAGCCTATGACGGGCCAGGGCCAGTCGGCGTCCGGGTCGTCGGCGTGGAGCACGGTATTCCGCCACGTCCGGTATGAGAACCTGATAGCGGGCGTGAGCGGCGGCGTCTTATCCAACCTTGCGCTGCATCCGCTCGACCTCGTGAAGATCCGCTTCGCCG|GCTGTCTCTACCAGGCCAGAATTTGGGGCAGGCAAGATTTTCAGCATCCCTAAAATCACACTAAGAAGATAAACATGGAAACAGCTTGGAGCTGCCCTACCCATAGTGAGGTGGTACTGACTGGAAGACAGCTTAAACGATTTGGAGAAAAGTGGAATACATTAATCTCAGAAAACTCTACCACCTGTAGAAAGAGAGCTAAAATGGAGACAACCA 7 0.922055429260211 0.83535308796509 0.516040654794781 N Y 3.45140766923839 3.57742544556096 3.45140766923839 0 0.990761316872428 0.0 Y 0.00222222222222235 N Y 641 441 ENSG00000164933 ENSG00000247081 + - 8 8 104427417 104311000 coding intron SLC25A32 RP11-318M2.2 104410863 104169218 - - 0.0 104427012 104279748 - + N - - N SA468 1 0.009174311926605509 1.0 1 0 3 N N 0.0 0.009174311926605509 11 1.49949316788052 1.27588453758255 1.49949316788052 1.27588453758255 4 - - 0.989093450744558 HCT116-unstranded 1.0 164588 GTGATGGATTGGAACTGAGACCGAAATATAATGGAATTTTACATTGCTTGACTACCATTTGGAAACTTGATGGACTACGGGGACTTTATCAAGGAGTAACCCCAAATATATGGGGTGCAGGTTTATCCTGGGGACTCTACTTTTTCTTGA|TCTTCTAAGGGTGTGAGGATACAGGCGTCAAAGACCCCGTGCTGAGACAGCTCCATAACAACATGCAGATATTTGGCAATGAGGGTTCAGAAGAGGACTTGCTGTGGAGAAGAGAGAAAAGAGATGGGAAGACTCTGTGAATGAATAGAGAACACTCTGCAAGCATCCCAGTTCCTTTG 7 0.923109101597364 0.601145183926641 0.430826189631313 N Y 3.27511556385332 3.6925594198089904 3.27511556385332 0 0.993353535353535 0.0 Y 0.0 N Y 641 441 ENSG00000164933 ENSG00000247081 + - 8 8 104427417 104311000 coding intron SLC25A32 RP11-318M2.2 104410863 104169218 - - 0.0 104419862 104258912 - + N - - N SA468 1 0.0 1.0 1 0 3 N N 0.0 0.0 9 0.979931938658759 1.1509267735925 1.1509267735925 0.979931938658759 4 - - 0.987017511532484 HCT116-unstranded 1.0 164587 CCTCCGCGGCCCTGGGCGCCGTGGTGTCGACGGGCCCCGAGCCTATGACGGGCCAGGGCCAGTCGGCGTCCGGGTCGTCGGCGTGGAGCACGGTATTCCGCCACGTCCGGTATGAGAACCTGATAGCGGGCGTGAGCGGCGGCGTCTTATCCAACCTTGCGCTGCATCCGCTCGACCTCGTGAAGATCCGCTTCGCC|GGATCTTCTAAGGGTGTGAGGATACAGGCGTCAAAGACCCCGTGCTGAGACAGCTCCATAACAACATGCAGATATTTGGCAATGAGGGTTCAGAAGAGGACTTGCTGTGGAGAAGAGAGAAAAGAGATGGGAAGACTCTGTGAATGAATAGAGAACACTCTGCAAGCATCCCAGTTCCTTTGGTTGCCCTGCAGTCTGCAGGTACCAGGAGAA 29 1.0 0.405286292202743 0.264879618565854 N Y 3.48696720636436 3.660633458326 3.48696720636436 1 0.9949362085788042 0.0 Y 0.0 N Y 641 441 ENSG00000164933 ENSG00000247081 + - 8 8 104427417 104311000 coding intron SLC25A32 RP11-318M2.2 104410863 104169218 - - 0.0 104427012 104258912 - + N - - N SA468 1 0.0 1.0 1 0 3 N N 0.0 0.0 38 1.3153448841057198 1.39426557715206 1.39426557715206 1.3153448841057198 4 - - 0.970193839180065 HCT116-unstranded 1.0 162236 GCTGAGGGCCTTTCTGGTTCTCTAGTTCAGGAACCTTTTCAGCTGGCTACTGAGAAGAGAGCCAAAGAGCGGCAGGAGCTGGAGAAGAGAATGGCTGAGGTAGAAGCCCAGAAAGCCCAGCAGTTGGAGGAGGCCAGACTACAGGAGGAAGAGCAGAAAAAAGAGGAGCTGGCCAGGCTACGGAGAGAACTG|CTAGAAAGACTTGAGTTAGACAAGCAGCAGCACACGCCTCCCTACCTCATGGCGACAGAAAATGGAGCAGTTGAGCTGGGAATTCAGAACCCATCAACAGACAAGGCACCTAAAGGTCCCACAGGTGAAAGACCCCTGGCTGCAGGGAAAGACCCTGGCCCCCCAGACCCAAAGAAAGCTCCGGATCCACCCACCCTGAAGAAAGA 12 0.9476227249847752 0.419053121165675 0.35109651989776297 N Y 3.2216342342823 3.4571608175836404 3.2216342342823 0 0.0 0.0 Y 0.0 N Y 21128 580 ENSG00000088325 ENSG00000101306 + - 20 20 30389608 30422492 coding utr5p TPX2 MYLK2 30327074 30407111 + + 0.0 30386355 30407336 + - N - - N SA468 1 0.0 1.0 1 0 1 Y N 0.0 0.0 16 1.1509267735925 1.3153448841057198 1.3153448841057198 1.1509267735925 4 - - 0.972865249429052 HCT116-unstranded 1.0 127257 AACCATCTAAGTGGTCAGAGACTTTATGGGAAAGTGCTTCGTGCTACACTGTCCAAACATCAAGCAGTACAGCTTCCTCGAGAGGGACAAGAAGACCAAGGTCTGACTAAGGATTTCAGCAATAGTCCTTTGCATCGCTTTAAAAAGCCGGGCTCTAAAAACTTCCAGAATATCTTTCCACCATCAGCCACTCTGCATCTTTCCAACATTCC|GTTTAGACGTCTGTGCCACTTGCCATGAACATGCCACATGCCAGCAAAGAGAAGGGAAGAAGATCTGTATTTGCAACTATGGATTTGTAGGGAACGGGAGGACTCAGTGTGTTGATAAAAATGAGTGCCAGTTTGGAGCCACTCTTGTCTGTGGGAACCACACATCTTGC 12 0.500762987670631 0.387240177584769 0.6489034801022371 Y Y 3.0867335950812698 3.60785432895764 3.0867335950812698 1 0.0 0.0 Y 0.0 N Y 5042 587 ENSG00000119314 ENSG00000106868 + - 9 9 115095947 114937688 coding coding PTBP3 SUSD1 114980715 114803065 - - 0.0 114989691 114919893 - + N - - N SA468 1 0.0173410404624277 1.0 1 0 1 Y Y 0.0 0.0173410404624277 10 1.4271491992547 1.13777332475144 1.4271491992547 1.13777332475144 4 - - 0.909737353353304 HCT116-unstranded 1.0 110917 CCGTGATTACCTTCATCTGCCCCCGGAGATTGTGCCTGCCACCCTACGCCGTAGCCGTCCAGAGACTGGCAGGCCTCGGCCTAAAGGTCTGGAGGGTGAGCGACCTGCGAGACTCACAAGAGGGGAAGCTGACAGAGATACCTACAGACGGAGTGCTGTGCCACCTGGTGCCGACAAGAAAGCCGAGGCTGGGGCTGGGTCAGCAACCGAATTCCAGTTT|GCTGGAGTAAAAGGGACATTGGGAAGATTAGTTGGAATTTTTGAGAACCAGGAGAGGAAGCACAGGACGTATGTCTATGTGCTCATTGTCACTGAAGTGCTGGAAGACTGGGAAGATTCAGTTAACATTGGAAGGAAGAGGGAATGGTTTAAAATAGAAGACGCCATAAAAGTGCTGCAGTATCACAAACCCGTGCAGGCATCATATTTTGAAAC 52 0.9541083148421328 0.880416178375993 0.62735163579911 Y Y 3.60935140704395 3.27870928670295 3.27870928670295 1 0.995359505013868 0.0 Y 0.9767975250693408 N Y 31497 2301 ENSG00000124614 ENSG00000112664 + - 6 6 34393902 34360451 coding coding RPS10 NUDT3 34385231 34255997 - - 0.0 34386146 34263462 - + N - - N SA468 17 0.0 9.66666666666667 1 14 1 Y Y 0.0 0.0 15 1.32192160852625 1.4271491992547 1.4271491992547 1.32192160852625 4 - - 0.92717317322916 HCT116-unstranded CGHSA0652 1.0 168168 AGAAGTTTTATATAGACCCATATAAGCTGCTGCCACTGCAGAGGTTTTTACCTCGACCTCCAGGTGAGAAAGGACCTCCAAGAGGTGGTGGCAGGGGAGGCCGAGGAGGAGGAAGAGGAGGAGGTGGCAGAGGTGGTGGCAGAGGCGGTGGTTTTAGAGGTGGAAGAGGAGGTGGAGGTGGGGGCTTCAGAGGAGGAAGAGGTGGTGGTTTCAGAG|GTATGATAAGTATTATCAGCAACATAATAGTTCTGGGCATCTTCATTAAGTACAAGGAACTTCGGACACCCACAAATGCAATTATTATTAACCTGGCTGTTACTGATATAGGGGTCAGTAGCATTGGCTATCCCATGTCTGCTGCCTCAGATCTGTATGGAAGTTGGAAATTTGGATACGCAGGCTGTCAGGTATTGGAGATCATTGGAATGAAAGCAAAATAAATAGA 19 1.0 0.7437238852083979 0.643876229392463 Y Y 2.98098634482147 3.4722913423473 2.98098634482147 0 0.0 0.0 Y 0.0 N Y 1204 222 ENSG00000109534 ENSG00000180245 + - 4 4 110745893 110765760 coding coding GAR1 RRH 110736666 110749150 + + 0.0 110745189 110754295 + - N - 0.0385558955094215 N SA468 2 0.31336405529953903 1.28571428571429 1 4 2 Y Y 0.31336405529953903 0.0 14 1.4008423015725902 1.49291644345999 1.49291644345999 1.4008423015725902 4 - 0.0714285714285714 0.9568752221467952 HCT116-unstranded 1.0 187349 CATGTTTTATAAGATTCTCCACGGCTTCAAAGACCAAGTTGGGGAAGATAACTGGCAGCAGTTCTCTGAGCAATTCCCGCCGCTGCTCAAGGAGAGGCTGGCGGCTTTCTATGGGGTCTAGGTGATCATGGAGACTGCC|AGCCGGCCCAGCCCTGTTGAAGCACCAGCAACTACACTCCAGACCCGTGCTGACCCTGCTGGCGGATGACCGGCACATCATCTCAGGCAGCGAGGACCACACCCTGGTGGTGGTGGACCGCCGAGCCAACAGCGTCCTGCAGCGTCTGC 2 0.00019460405762878705 0.9753664691827828 0.152456308281815 Y Y 3.56488607910057 3.4865659787802405 3.4865659787802405 0 0.0 0.0 Y 0.0 N Y 6992 473 ENSG00000105576 ENSG00000132004 + - 19 19 12834825 12807457 utr3p coding TNPO2 FBXW9 12810008 12798867 - - 0.0 12812140 12800924 - + N - - N SA468 1 0.0 1.0 1 0 2 N Y 0.0 0.0 6 0.690556064155501 1.381112128311 1.381112128311 0.690556064155501 4 - - 0.935136430992187 HCT116-unstranded 1.0 137311 AAATGCCGGTGTGAACTGATAGCGGACAAAACGTCCTGCGCTGATGTCCACGTCTCCACCTCCCTCCTCCTCATCCTCCTCCTGGTCTGAAACGCAAGGTTTGGCAATCTCAAAAAGTACTGTCCCTGTCTCCAAATCTCGAATTTTGAAGCGGGTGAAATCAATACTGTAGATGTTGTCTTCGGGTTTACATAAATAAT|CGGCAGAGGCAGAAGAGGGTTGGAATGAAGACTCCGAAGGCCACCAGGATGGGAAACATGAGGCTGCTGTTGTCCGAGGCATAGGGGTTGGGTGTGCGGGGGCCTGACTGCACCCGGTTCTTATTGGTCTGTTTTTTGAGATTAGACCCTTCATCATATTCTTCTT 6 1.0 0.598993812537745 0.571782998755728 Y Y 3.43681151080804 3.43417115214159 3.43417115214159 0 0.0 0.0 Y 0.0 N N 4884 20749 ENSG00000175970 ENSG00000110917 - + 12 12 121161443 121139667 coding coding UNC119B MLEC 121148238 121124672 + + 0.0 121151077 121134341 - + N - 0.962137358818943 N SA468 1 0.0473372781065089 1.0 1 0 1 Y Y 0.0 0.0473372781065089 12 1.17723367127462 1.11146642706933 1.17723367127462 1.11146642706933 4 - 61.6666666666667 0.979036526648739 HCT116-unstranded 1.0 103611 AGTGACAGCGAAGGGGAGGACAGGCGGCCCGCAGGACCCCCGCGGGAGCCGGTCAGGCGGCGGCGGCGGCTGGTGCTGGATCCGGGGGAGGCGCCGCTGGTTCCGGTGTACTCGGGGAAGGTTAAAAGCAGCCTTCGCCTTATCCCAGATGATCTATCCCTCCTGAAACTCTACCCTCCAGGGGATGAGGAAGA|TTTTCATCTTCATTGGAGAGACCCTCCTGTCCATGAACTGGGCCATCGTGGCCGACATTCTGCTGTACGTGGTGATCCCTACCCGACGCTCCACCGCCGAGGCCTTCCAGATCGTGCTGTCCCACCTGCTGGGTGATGCTGGGAGCCCCTACCTCATTGGCCTGGCCTGCTGCACGAAGCAGGGTCC 6 0.7924345350555071 0.95466716178366 0.273237300726196 Y Y 3.2374364540250804 3.4278353619737403 3.2374364540250804 0 0.994666405353193 0.0 Y 0.0 N Y 890 1800 ENSG00000176953 ENSG00000169682 + - 16 16 28978418 28995869 coding coding NFATC2IP SPNS1 28962128 28985542 + + 0.0 28963525 28994178 + - N - - N SA468 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 11 1.1509267735925 1.17723367127462 1.17723367127462 1.1509267735925 4 - - 0.979898667759493 HCT116-unstranded 1.0 103595 GTCAGGCGGCGGCGGCGGCTGGTGCTGGATCCGGGGGAGGCGCCGCTGGTTCCGGTGTACTCGGGGAAGGTTAAAAGCAGCCTTCGCCTTATCCCAGATGATCTATCCCTCCTGAAACTCTACCCTCCAGGGGATGAGGA|AGGTGGGATCGTCGGTGGGACCGGAGCGCGGGCGGGCGCGGCCCCCCGGGACCATGGCCGGGTCCGACACCGCGCCCTTCCTCAGCCAGGCGGATGACCCGGACGACGGGCCAGTGCCTGGCACCCCGGGGTTGCCAGGGTCCACGGGGAACCCGAAGTCCGAGGAGCCCGAGGTCCCGGACCAGGAGGG 3 0.8893235326070741 0.612210451480463 0.7627413153773579 Y Y 3.18871505582277 2.92867122376953 2.92867122376953 0 0.9928787224859732 0.0 Y 0.0 N Y 890 1800 ENSG00000176953 ENSG00000169682 + - 16 16 28978418 28995869 coding utr5p NFATC2IP SPNS1 28962128 28985542 + + 0.0 28963525 28986422 + - N - - N SA468 1 0.0 1.0 1 0 2 N Y 0.0 0.0 5 0.8023603793044871 0.7629000327813159 0.8023603793044871 0.7629000327813159 4 - - 0.9776250132194292 HCT116-unstranded 1.0 17376 CCAGATGTGGGATAAGCAGAAGGAGGTCTTCCTGCCCTCGACCCCTGGCCTGGGCATGCACGTGGAAGTGAAGGACCCCGACGGCAAGGTGGTGCTGTCCCGGCAGTACGGCTCGGAGGGCCGCTTCACGTTCACCTCCCACACGCCCGGTGACCATCAAATCTGTCTGCACTCCAATTCTACCAGGATGGCTCTCTTCGCTGGTGGCAAACTG|GTCGCGAGAATCAGGTGCGTCAGCGGCGTCCGGGAACGCCGGAAGAGCCAGTGGAGCGGCTCTGTAGTCCAAAGTACCCCGTCGACCCCAGCACGGCCGCTCCACCGCCTCCTACTAGACCCAGTCCTAGGGACTGCGCAGTCG 1 0.767147268490149 0.654007302070355 0.7666490600031259 Y Y 3.68783934123363 3.418448637985509 3.418448637985509 7 0.9930748994119468 0.0304859176725473 Y 0.0 N N 3206 10575 ENSG00000158604 ENSG00000136271 + - 7 7 44621886 44614650 coding utr5p TMED4 DDX56 44617493 44605016 - - 0.0 44621048 44613788 - + N - 495.620517617711 N SA468 1 0.0 1.0 1 0 2 N Y 0.0 0.0 9 1.00623883634087 0.578751749006515 1.00623883634087 0.578751749006515 4 - 0 0.930345811040335 HCT116-unstranded CGHSA0688 1.0 111004 GAGCCGAGCTGATTTGATCGAGGAGCGCGGTTACCGGACGGGCTGGGTCTATGGTCGCTCCGCGGGCCGCTCCGCCGGCTGGTGCTTTTTTATCAGGGCAAGCTGTGTTCCATGGCAGGGAACTTTTGGCAGAGCTCCCACTA|GGACCACCAAGCTCACCGCAGAGCGCAGCCTCCGCGGACCCGAGGACCGCCCTGCGCGCAGTCTCGAGCAGCAACCAGGGTAGCACCATTGCGGGCCGGCGGCCGCCGCGCTAGTGACCACTTCCTCCTACTCCTTCTCCTCCTGCTCCGGCCTCCTGGCGCCCTGCT 4 0.987345560051205 0.28976530305763104 0.6270129136939201 Y Y 3.6025651889288097 3.30119509103522 3.30119509103522 1 0.993029406490945 0.0 Y 0.0 N Y 1612 726 ENSG00000112237 ENSG00000123552 + - 6 6 100016849 99969604 coding utr5p CCNC USP45 99990256 99880190 - - 0.0 100016372 99969039 - + N - - N SA468 1 0.162790697674419 1.0 1 0 2 N Y 0.0 0.162790697674419 7 0.782630206042902 0.848397450248187 0.848397450248187 0.782630206042902 4 - - 0.980532788282176 HCT116-unstranded 1.0 110936 TTTACAAATGTTATCCAAGCATTAGGTGAACATCTTAAATTAAGACAACAAGTTATTGCCACTGCTACGGTATATTTCAAGAGATTCTATGCCAGGTATTCTCTGAAAAGTATAGATCCTGTATTAATGGCTCCTACATGTGTGTTTTTGGCATCCAAAGTAGAGGAATTTGGAGTAGTTTCAAATACAAGATTGATTGCTGCTGCTACTTCTGTAT|GGACCACCAAGCTCACCGCAGAGCGCAGCCTCCGCGGACCCGAGGACCGCCCTGCGCGCAGTCTCGAGCAGCAACCAGGGTAGCACCATTGCGGGCCGGCGGCCGCCGCGCTAGTGACCACTTCCTCCTACTCCTTCTCCTCCTGCTCCGGCCTCCTGGCGCCCTGCTC 2 0.618770112522006 0.5574281204214621 0.7791917983120871 Y Y 3.45720067037699 3.30119509103522 3.30119509103522 0 0.994098130055196 0.0 Y 0.0 N Y 1612 726 ENSG00000112237 ENSG00000123552 + - 6 6 100016849 99969604 coding utr5p CCNC USP45 99990256 99880190 - - 0.0 100006373 99969039 - + N - - N SA468 1 0.153284671532847 1.0 1 0 2 N Y 0.0 0.153284671532847 6 1.2430009154799 0.8023603793044871 1.2430009154799 0.8023603793044871 4 - - 0.981229890541783 HCT116-unstranded 1.0 62086 TCTCAAGTGAGCAGTTGAGCTTGGAACTGCACCAGGTGGAAAGGGAAATCGGGAAGAGAACACGGGAACTGAGTATGGAAAACCAGTGTTCTCTGGACATGAAAAGCAAACTGAATACAAGTAAACAAGCAGAAAATGGACAACCAGAACCACAAAACAAGGTTCCGGCTGAGGACCTTACATTGACATTC|AGGAAGGTTTATCTTTTGTCCTTGCTGCTCATTGGCTTCTGGGACTGCGTGACCTGTCACGGGAGCCCTGTGGACATCTGCACAGCCAAGCCGCGGGACATTCCCATGAATCCCATGTGCATTTACCGCTCCCCGGAGA 7 0.953124739320704 0.874887278037798 0.651271261477907 N Y 3.76848670091893 3.41103992525442 3.41103992525442 3 0.0 0.0 Y 0.0 N Y 2765 90 ENSG00000135870 ENSG00000117601 + - 1 1 173991435 173886516 coding intron RC3H1 SERPINC1 173900352 173872947 - - 0.0 173910403 173884057 - + N - 10.4076655052265 N SA468 1 0.0 1.0 1 0 1 Y N 0.0 0.0 9 1.1509267735925 0.901011245612416 1.1509267735925 0.901011245612416 4 - 0 0.9922371792578748 HCT116-unstranded 1.0 41501 CAGAGGGAAGCAAATTGTTGGATGATGCAATGGCAGCAGATAAAAGTGACGAGTGGTTTGCCAAACACAATAAACCCAAAGCTTCAGGTTAACGGAAGACATGATGCAGAGCAAGCCTCTGTGATTCCTGCCCAGCACCTGTGAGGCCTGACGT|GACCCTTGAACATCTGTGAAGAAATGACTATTCTGCATGGAGGCTTCTTGCTGGCCGAGCAGCTGTTCCACCCTAAGGCACTGGCAGAATTAACAAAGTCTGACTGGGAACGTGTTGGACGGCCCATCGTGGAGGCCTTAAGGGAGATCTCCTCGGCTGCAGCACACTCCCAGCCCTTTGCCTGGAAGAAGAAAGCCCTGATCATCATCTGGGC 6 0.8660131418164709 0.618889684614121 0.5 Y Y 3.5027295733137898 3.5110433747387795 3.5027295733137898 0 0.0 0.0 Y 0.0 N Y 2059 6606 ENSG00000167699 ENSG00000179409 + - 17 17 685581 657239 utr3p coding GLOD4 GEMIN4 660337 647654 - - 0.0 663351 651272 - + N - - N SA468 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 7 1.03254573402299 1.21011729337726 1.21011729337726 1.03254573402299 4 - - 0.984901496294102 HCT116-unstranded 1.0 41500 AGAATCGCAGTCTGCCTCAGTCAGATCCTGTATTAAAAGTAACTCTAGCAGTGTCTGATCTTCAAAAGTCCTTGAACTACTGGTGTAATCTACTGGGAATGAAAATTTATGAAAAAGATGAAGAAAAGCAAAGGGCTTTGCTGGGCTATGCTGATAACCAG|GACCCTTGAACATCTGTGAAGAAATGACTATTCTGCATGGAGGCTTCTTGCTGGCCGAGCAGCTGTTCCACCCTAAGGCACTGGCAGAATTAACAAAGTCTGACTGGGAACGTGTTGGACGGCCCATCGTGGAGGCCTTAAGGGAGATCTCCTCGGCTGCAGCACACTCCCAGCCCTTTGCCT 17 0.4856332248333121 0.552703148370536 0.4106407999644529 Y Y 3.23318038376614 3.5110433747387795 3.23318038376614 0 0.0 0.0 Y 0.0 N Y 2059 6606 ENSG00000167699 ENSG00000179409 + - 17 17 685581 657239 coding coding GLOD4 GEMIN4 660337 647654 - - 0.0 674565 651272 - + N - - N SA468 1 0.15625 1.0 1 0 2 N Y 0.15625 0.0 16 1.05227590728457 1.18381039569515 1.18381039569515 1.05227590728457 4 - - 0.976432827484225 HCT116-unstranded 1.0 64412 AGAATTTTACTCTGGGATACCCGCTGTCCCAAGCCAGCATCACAGATTGGCTGCAGTGCGCCTGGCTACCTTCCTACCTCGCTGGCTTGGCATCCTCAGCAAAGTGAAGTCTTTGTCTTTGGTGATGAGAATGGGACAGTCTCCCTTGTGGACACCAAGAGTACAAGCTGTGTCCTGAGCTCAGCTGTACACTCCCAGTGTGTCACTGGGCTGGTGTTCTCCCCA|CACAGGGCTGGTTCTTGTGCTGAAACACCACGATGGTGCTGCCCATAAACTCGTGTGTTATTTCACCAACTGGGCACACAGTCGGCCAGGCCCTGCCTCGATCTTGCCCCATGACCTGGACCCCTTTCTCTGCACCCACCTGATATTTGCCTTTGCCTCAATGAACAACAATCAGATTGTTGCTAAGGATCTCCAGGATGAGAAAATTCTCTACCCAGAGTTCAAC 18 1.0 0.514271628910216 0.398253499356067 N Y 3.17295268887334 3.53296011761759 3.17295268887334 0 0.9955653883972472 0.0 Y 0.0 N Y 2361 1724 ENSG00000116455 ENSG00000085465 + - 1 1 111991998 111970399 coding utr5p WDR77 OVGP1 111982512 111956936 - - 0.0 111985275 111969713 - + N - - N SA468 1 0.0 1.0 1 0 4 Y N 0.0 0.0 59 1.52580006556263 1.381112128311 1.52580006556263 1.381112128311 4 - - 0.9789359164493948 HCT116-unstranded CGHSA0371 1.0 63894 ACCGGTCCGATGGGGCGCTTCTCCTCGGGGCCTCCAGCCTGAGTGGGCGCTGCTGGGCCGGCTCCCTCTGGCTTTTTAAGGACCCCTGTGCCGCCCCCAACGAAGGCTTCTGCTCCGCCGGAGTCCAAACGGAGGCTGGAGTGGCTGACCTCACTTGGGTTGGGGAGAGAGGTATTCTAGTGGCCTCCGATTCAGGTGCTG|CCCATAAACTCGTGTGTTATTTCACCAACTGGGCACACAGTCGGCCAGGCCCTGCCTCGATCTTGCCCCATGACCTGGACCCCTTTCTCTGCACCCACCTGATATTTGCCTTTGCCTCAATGAACAACAATCAGATTGTTGCTAAGGATCTCCAGGATGAGAAAATTCTCTACCCAGAGTTCAACAAACT 13 0.431325772369306 0.8180069549721841 0.483796122675029 N Y 3.6052936758779 3.4451253122330296 3.4451253122330296 9 0.9947502685284642 0.0 Y 0.0 N Y 2361 1724 ENSG00000116455 ENSG00000085465 + - 1 1 111991998 111970399 coding coding WDR77 OVGP1 111982512 111956936 - - 0.0 111991241 111969263 - + N - - N SA468 2 0.0 1.02941176470588 1 1 4 Y N 0.0 0.0 34 1.26273108874149 1.46003282135735 1.46003282135735 1.26273108874149 4 - - 0.925664588899352 HCT116-unstranded CGHSA0371 1.0 64275 AGATGAGAATGAGACACTTATTGTCAGCAAGTTCTGCAAGTATGAGCATGATGACATTGTGTCTACAGTCAGTGTCTTGAGCTCTGGCACACAAGCTGTCAGTGGTAGCAAAGACATCTGCATCAAGGTTTGGGACCTTGCTCAGCAGGTGGTACTGAGTTCATACCGAG|GGCTGGTTCTTGTGCTGAAACACCACGATGGTGCTGCCCATAAACTCGTGTGTTATTTCACCAACTGGGCACACAGTCGGCCAGGCCCTGCCTCGATCTTGCCCCATGACCTGGACCCCTTTCTCTGCACCCACCTGATATTTGCCTTTGCCTCAATGAACAA 3 0.778123964422123 0.402586731785831 0.549066600740168 N Y 3.75169126419961 3.4586884008934904 3.4586884008934904 0 0.993883398846479 0.0 Y 0.0 N Y 2361 1724 ENSG00000116455 ENSG00000085465 + - 1 1 111991998 111970399 coding coding WDR77 OVGP1 111982512 111956936 - - 0.0 111989717 111969713 - + N - - N SA468 1 0.0 1.0 1 0 4 Y N 0.0 0.0 7 1.0588526317051 0.7957836548839592 1.0588526317051 0.7957836548839592 4 - - 0.989360027876739 HCT116-unstranded CGHSA0371 1.0 30762 GAGGGGCGAGGGGGCTAGCGGCGACCGCTGGGGCGAGCGCGCCTGCGCGCTGGGTGATTTTTTCACGTGTCGCCAGGGCCGGACTGCGAGTCTCTTTGCGGCGCTACACTAGAGCAGAGTACGAGTCTGAGGCGGAGGGAGTAATGGGTGGAGAGATTCAACCAGTTAGCGTGAAAGTTGGAGATAAAGTTCTTCTCCCAGAATATGGAGGCACCAAAGTAGTTCTAGATGACAAG|TATATTCAACAGAACATAAGAGCAGATTGCTCCAATATTGACAAAATTCTTGAACCACCTGAAGGCCAAGATGAAGGTGTGTGGAAGTATGAACATTTAAGGCAGTTCTGCCTTGAGCTAAATGGACTTGCTGTCAAACTTCAGAGTGAATGCCATCCAGATACTTGCACTCAAATGACAGCAACTGAACAATGGAT 41 0.723829797578313 0.8079571793670329 0.517368800283314 Y Y 3.58424216889964 3.52567938596249 3.52567938596249 0 0.994935554048048 0.0 Y 0.0 N Y 10866 3104 ENSG00000115541 ENSG00000115540 + - 2 2 198368181 198418423 coding coding HSPE1 MOB4 198364718 198380295 + + 0.0 198367852 198400254 + - N - - N SA468 36 0.0 7.12820512820513 1 30 3 Y Y 0.0 0.0 39 1.5192233411421 1.32849833294677 1.5192233411421 1.32849833294677 4 - - 0.932560682844702 HCT116-unstranded 1.0 30730 GCTACACTAGAGCAGAGTACGAGTCTGAGGCGGAGGGAGTAATGGCAGGACAAGCGTTTAGAAAGTTTCTTCCACTCTTTGACCGAGTATTGGTTGAAAGGAGTGCTGCTGAAACTGTAACCAAAGGAGGCATTATGCTTCCAGAAAAATCTCAAGGAAAAGTATTGCAAGCAACAGTAGTCGCTGTTGGATCGGGTTCTAAAGGAAAG|TATATTCAACAGAACATAAGAGCAGATTGCTCCAATATTGACAAAATTCTTGAACCACCTGAAGGCCAAGATGAAGGTGTGTGGAAGTATGAACATTTAAGGCAGTTCTGCCTTGAGCTAAATGGACTTGCTGTCAAACTTCAGAGTGAATGCCATCCAGATACTTGC 50 0.994827887349496 0.989469450863871 0.611861838460651 Y Y 3.6000045358490698 3.52567938596249 3.52567938596249 0 0.994063366087176 0.0 Y 0.0 N Y 10866 3104 ENSG00000115541 ENSG00000115540 + - 2 2 198368181 198418423 coding coding HSPE1 MOB4 198364718 198380295 + + 0.0 198365962 198400254 + - N - - N SA468 21 0.0 8.52380952380952 2 21 3 Y Y 0.0 0.0 21 1.22984746663885 0.920741418874002 1.22984746663885 0.920741418874002 4 - - 0.945122917211106 HCT116-unstranded 1.0 30231 GGGGCTAGCGGCGACCGCTGGGGCGAGCGCGCCTGCGCGCTGGGTGATTTTTTCACGTGTCGCCAGGGCCGGACTGCGAGTCTCTTTGCGGCGCTACACTAGAGCAGAGTACGAGTCTGAGGCGGAGGGAGTAATGG|CAGTTCTGCCTTGAGCTAAATGGACTTGCTGTCAAACTTCAGAGTGAATGCCATCCAGATACTTGCACTCAAATGACAGCAACTGAACAATGGATTTTTCTTTGTGCAGCTCATAAAACTCCAAAAGAGGGTTAGCATAAAGGAATCATCTGTAGCGAAACTAGGATCAGTATGCCGTAGGATTTACAGAATATTTTCACATGCTTATTTTCATCATCGGCAGATATTTG 3 1.0 0.952995707718688 0.509837974800476 Y Y 3.43142908482337 3.56232542602083 3.43142908482337 5 0.992720564900032 0.0 Y 0.0 N Y 10866 3104 ENSG00000115541 ENSG00000115540 + - 2 2 198368181 198418423 coding coding HSPE1 MOB4 198364718 198380295 + + 0.0 198365163 198404835 + - N - - N SA468 2 0.0 1.2 1 1 3 N Y 0.0 0.0 5 0.848397450248187 1.2561543643209598 1.2561543643209598 0.848397450248187 4 - - 0.910361602776649 HCT116-unstranded 1.0 1528 GTGTGGAAGACCTCAGTCACCCTGTGGCAGAGCCCAGCTCGAGCCAGGCTGGCAGCATGAGCAGTGCAGGCCCAAGACCACTACCCAGTGGCCCAGCATCCCCCAAACGCAAGCTGGAAGCAGCCGAGGAACCACCTGGTGAAGAACTCAGCAAACGGGCCCGGGTGGCAGAGTTGCCAACCCCAGAGCTGCCGAGCAAGGATGCCTGAGA|GCTCACCCATGACATCAGCCTGGAGGAGTTTGAGGATGAAGACCTCTCGGAGATCACTGATGAGTGTGGCATCAGCTTACAGTGCAAAGACACCCTGTCCTTACGGCCCCCGCGCGCCGGGCTGCTCTCTGCGGGCGGCGGCGGCGCGGGGAGC 15 1.0 0.818197996645868 0.5429594929834339 Y Y 3.42953077915294 3.5010341561346 3.42953077915294 0 0.0 0.0 Y 0.0 N Y 714 825 ENSG00000121671 ENSG00000121653 + - 11 11 45904798 45928016 utr3p coding CRY2 MAPK8IP1 45868669 45907202 + + 0.0 45893784 45919636 + - N - - N SA468 1 0.14 1.0 1 0 1 Y Y 0.0 0.14 17 1.1969638445362 0.986508663079288 1.1969638445362 0.986508663079288 4 - - 0.988005071578667 HCT116-unstranded 1.0 192794 TCCAAAAAATTTACCCAGAGTCTTTTAGTCCTGCTATACAGCTGCACCTTGTACATCAAGCTCCATGTAATGTTCCTCCTTACCTCTCAAAGAATGAATCAAACCTTGGGGACCTCTTACTGGGCTTTCTTAAATATTATGCTACAGAATTTGA|ACAGATGTAAGCCAGTCAGTAGCTGGGCTTCATCTTGCATATTCCTAGGAGGAAATATGTTTATGAAGTGATGGCAAACGCGGCTGCTGCATTGGTCAGGAATGATAACCGCAGAGGAATTTAAACCCAGCCTTAAGGAGTAGGTAGAATTTACA 20 0.5955690840328629 0.258427368293598 0.24743147652498 Y Y 3.2668017624283303 3.63721963736088 3.2668017624283303 1 0.0 0.0 Y 0.0 N N 915 5218 ENSG00000164329 ENSG00000164309 + - 5 5 78982471 79096063 coding intron PAPD4 CMYA5 78907943 78985700 + + 0.0 78964851 79023365 + - N - 0.0175724865068407 N SA468 1 0.0 1.0 1 0 2 N Y 0.0 0.0 14 0.92731814329453 0.966778489817702 0.966778489817702 0.92731814329453 4 - 0 0.94746928005649 HCT116-unstranded 1.0 193559 ACAGGAGTCTTTTAGTCCTGCTATACAGCTGCACCTTGTACATCAAGCTCCATGTAATGTTCCTCCTTACCTCTCAAAGAATGAATCAAACCTTGGGGACCTCTTACTGGGCTTTCTTAAATATTATGCTACAGAATTTGAGT|TATCAGACCAGGATGAAGAGGGAAAGATCAAGCAGGAGTATATCATATCTGACCCCTCCTTTTCCATGGTGACAGTCCAAAGGGAAGATAGTGGGATAACCTGGGAAACCAATTCAAGTAGATCTTCTACTCCTTGGGCTTCAGAAGAAAGTCAGACTTCTGGTGTGTGTAGTCGG 8 0.668388686284976 0.421564751894332 0.143893668243 Y Y 3.35935664638825 3.2216342342823 3.2216342342823 0 0.0 0.0031250000000000396 Y 0.0100961538461538 N Y 915 5218 ENSG00000164329 ENSG00000164309 + - 5 5 78982471 79096063 intron coding PAPD4 CMYA5 78907943 78985700 + + 0.0 78964851 79024738 + - N 0.657139186203666 0.0175700202586174 N SA468 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 8 0.8089371037250159 0.986508663079288 0.986508663079288 0.8089371037250159 4 5.875 0 0.97545243376044 HCT116-unstranded 1.0 1630 CAGCCTGGGTCTTGAATGCCAGCCCTTTCGGCATACATAGCATTCCTACTGCATCTTGGTCAAAGGGATTCCATTCTACGTTCTCAGGATATCGTGCAAGGACCTTAGATTTGAATGTTCTTCTCAATGGTGTCTGCTCAAAATTTTCTCCTTCAGTCGTACTTGAAATGAAAGGGCTGGCACCATCCCTGGCTTTAGAAGCCTGTATGTACTGGCATAATG|CCTTCTGGTGGTCTCTGCTGCCAGGCGCCGCGAGACCCCGCGTCCCCGCTGCCCCGTCCCCCACGGGGGTCGTGTGGTGAGCGCCCAACTGCGATCGTTCGGCGACTCTGCCTTTCGCCATGGCTGCTGCAAGGTGAAGGGAGCGGTGCGGTGCCGCG 8 0.617567026096746 0.675337121579133 0.9297171449359268 Y Y 3.60103760561896 3.448886868952 3.448886868952 1 0.0 0.0 Y 0.0 N Y 2145 325 ENSG00000184014 ENSG00000166471 - + 11 11 9286937 9336327 coding coding DENND5A TMEM41B 9160372 9302201 - - 0.0 9229179 9335868 + - N - 0.414204583441152 N SA468 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 11 1.1509267735925 0.986508663079288 1.1509267735925 0.986508663079288 4 - 2.90909090909091 0.937113195088789 HCT116-unstranded 1.0 41528 GGGTAGAGGCTGAGGGGAGTTGGTCACCACAGGGATAGGGATGACAGTCAGTGGGGCAGGGGTGGCAAGTGGTGGTGGGGGTGCCGGCGGGGGAGCCGGTGGAGACAGAGGCAGGGGTGGCGCCTCCATGCGGGGTTCCTCCACAGGAAGGGTATGTGCCAGCCTGGCCAGGCTATTGGCCTTCTTCTGTTCCTGCTCTCGCTCCTGCTCCAAGCGAAGCCGCTCCTGCTCCT|TCCTTTCATCCTCCGTGGGTTCCGGGTTTTCCTCCTGGGACAGGGACTCCTGGCTCGGGCACGGGCCCTCCACAGCGGCAGCCTCGCCTTCCCGCAGAGCAGGCCCACAGGGGGTCCTCTCCTGGGGGCCCCTGGCCAGTTCTTGGCTATTGCCAGACTCTTTGGGGGTGGGCTTTTTCTCTTCCAAGGCCT 16 1.0 0.682386672261914 0.596739413529774 Y Y 3.00822273295264 2.94955489687844 2.94955489687844 1 0.0 0.0 Y 0.0 N N 2083 3718 ENSG00000070444 ENSG00000127804 - + 17 17 2304412 2415185 coding coding MNT METTL16 2287354 2319343 - - 0.0 2298748 2323551 + - N - 0.878238081651375 N SA468 1 0.52863436123348 1.0 1 0 1 N Y 0.52863436123348 0.0 29 1.39426557715206 1.2824612620030702 1.39426557715206 1.2824612620030702 4 - 5.20689655172414 0.969956410093246 HCT116-unstranded 1.0 17820 AGCTGCGGGATGCAGTGCTGCTGGTATTTGCCAACAAGCAGGACATGCCCAACGCCATGCCCGTGAGCGAGCTGACTGACAAGCTGGGGCTACAGCACTTACGCAGCCGCACGA|CCTGGGAGATCTTGGTGAGCAATGAGCATGAGACACAGGCCGTGGTGCGACTAAAGAGCGTGCAGGGCCTCTACCTGCTGTGTGAGTGTGATGGCACCGTGTGTTATGGCCGCCCAAGGACCAGCCACCATGGGTGCTTTCTACTGCGTTTCCACCGGAACAGCAAGTGGACCCTCCAGTGCCTAATCTCTGGTCGTTATTTGGAGTCCAATGGCAAGGACGTGTTTTGCACTTCCCACGTCCTCTCAGCTTACC 23 0.35030225812637106 0.631455935005146 0.370354628108346 Y Y 3.40272612382943 3.48337348351473 3.40272612382943 0 0.0 0.0 Y 0.0 N Y 7724 352 ENSG00000004059 ENSG00000106328 + - 7 7 127231759 127242198 intron coding ARF5 FSCN3 127228399 127231463 + + 0.0 127231142 127235361 + - N - 0.43820356560049 N SA468 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 6 0.664249166473387 0.7037095129965579 0.7037095129965579 0.664249166473387 4 - 0 0.9714162307789292 HCT116-unstranded CGHSA0795 1.0 162832 TGGGCGCACAGTCCATGATGCCTGTTCCCTTCATGTCGGTGATGTGGAGCAGCTCCCCTGAGCTCTGCAGCTAGTATCTCCAGCTTCAGAGGCAGATTGTGCAATGTCACTGCATGCTTCTGGCTGGTTCTCAGAAACTGAATTCTATGGAGCTATCTGACAACACATGGGAAACGATCAAAAAGACTCTCCCAGCAGGCAAACTTT|CTGACTGTGAGTTCATGATCCTCAGAGGTTTATCTGGGATAGAGGGAGGACTGGGGTTAAGACGTGTTCTTGCACAGAAAATTCGTGCTGGCCTCTGCCAGATACTTGTGGCCACCATCAGTTGGAGACTGCTTTAAGATCCCCATTTGATTTTCTCTGAGCAGTA 18 0.9899620915717758 0.90519817260022 0.5778787812302429 Y Y 3.21431880750704 3.40591861909494 3.21431880750704 0 0.0 0.0 Y 0.0 N N 1281 3531 ENSG00000087589 ENSG00000101138 - + 20 20 55034396 54979518 utr5p downstream CASS4 CSTF1 54987168 54967427 + + 0.0 54987342 54982837 - + N - - N SA468 1 1.0 1.0 1 0 2 N Y 0.0 1.0 17 1.32849833294677 1.09173625380775 1.32849833294677 1.09173625380775 4 - - 0.990005632208546 HCT116-unstranded 1.0 162248 GTTGGGGCACAACAATATTGTACGCTGCATAGTGCACTCCCCCACCAACCCCGGGTTCATGACGTGCAGCGATGACTTCAGAGCGCGGTTTTGGTACCGGAGATCGACCACTGACTGAGCCACCCTCTCCGTAGGGTTCTTTCTCGAGGACTCTACCCTCCTCCCCCACGTCCTGTCTCAGCTGCAGTC|AAAGTTTGCCTGCTGGGAGAGTCTTTTTGATCGTTTCCCATGTGTTGTCAGATAGCTCCATAGAATTCAGTTTCTGAGAACCAGCCAGAAGCATGCAGTGACATTGCACAATCTGCCTCTGAAGCTGGAGATACTAGCTGCAGAGCTCAGGGGAGCTGCTCCACATCACCGACATGAAGGGAACAGGCATCATGGACTG 9 0.471293765725403 0.38486861749151297 0.616760472283312 Y Y 3.0537745638283904 3.21431880750704 3.0537745638283904 0 0.0 0.0 Y 0.0 N N 3531 1281 ENSG00000101138 ENSG00000087589 + - 20 20 54979518 55034396 utr3p utr5p CSTF1 CASS4 54967427 54987168 + + 0.0 54978854 54987342 + - N 2.28440097864268 0.0420125166011615 N SA468 1 0.0 1.0 1 0 2 N Y 0.0 0.0 18 1.11146642706933 1.30876815968519 1.30876815968519 1.11146642706933 4 14.8333333333333 1.05555555555556 0.952187114981665 HCT116-unstranded 1.0 163859 TGACATTGCCAGTCAAGCACACTTGCACCTAAAGCATGCTAGGTCCTTTCACAAAACTGTTCCTGTGAAAGCATTTCCTGCTTTTCTTCAGACGGAAATTAAGGATGCAGACACTCAGGGCGTGTGTCTTGCACAGCCAGCCAGCCTGGGAAAATGAAGCCAACTGGGAGAGAGATTTGAAGGACTCTGGTTCTAGGCATGCGCACTTCTCCAGG|CTATTAGTGAAAGATGGTGGATCGCTTGGCAAACAGTGAAGCAAATACTAGACGTATAAGTATAGTGGAAAACTGTTTTGGAGCAGCTGGTCAACCTTTAACTATACCTGGACGAGTTCTTATTGGAGAAGGAGTATTGACTAAGTTGTGCAGGAAAAAGCCC 8 0.6234425599597541 0.4757547267308039 0.9119545997680992 Y Y 3.7297745213208 3.64553343878587 3.64553343878587 0 0.0 0.0 Y 0.0 N Y 421 1299 ENSG00000156170 ENSG00000175895 + - 8 8 96128683 96168912 utr3p utr5p NDUFAF6 PLEKHF2 95907995 96146032 + + 0.0 96087980 96166259 + - N - - N SA468 1 0.029585798816567994 1.0 1 0 2 N Y 0.0 0.029585798816567994 8 1.02596900960246 1.11146642706933 1.11146642706933 1.02596900960246 4 - - 0.9540389092164508 HCT116-unstranded 1.0 163965 TCATGGGAGCAGAAGAAAGGTGTTCCTTCCCATGGATATTTGTATGCTGCATGGTGTTTCACAAGAGGACTTTCTACGGAGGAACCAAGATAAAAATGTGAGAGATGTAATATATGACATTGCCAGTCAAGCACACTTGCACCTAAAGCAT|GCTATTAGTGAAAGATGGTGGATCGCTTGGCAAACAGTGAAGCAAATACTAGACGTATAAGTATAGTGGAAAACTGTTTTGGAGCAGCTGGTCAACCTTTAACTATACCTGGACGAGTTCTTATTGGAGAAGGAGTATTGACTAAGTTGTGCAGGAAAAAGCCCAAAGCA 26 0.103426619622671 0.794790966701702 0.594353700635957 Y Y 3.5303596117444904 3.64553343878587 3.5303596117444904 0 0.0 0.0 Y 0.0 N Y 421 1299 ENSG00000156170 ENSG00000175895 + - 8 8 96128683 96168912 coding utr5p NDUFAF6 PLEKHF2 95907995 96146032 + + 0.0 96060786 96166259 + - N - 0.103141117863891 N SA468 1 0.0 1.0 1 0 2 N Y 0.0 0.0 22 1.2956147108441298 1.01939228518193 1.2956147108441298 1.01939228518193 4 - 1.86363636363636 0.9635614193358792 HCT116-unstranded 1.0 193289 AGTTCCGGCTGGACATATTCAAGGATTTTCAGGAGGAAACGGTGAAGGACTATGAAGCTGGCCAACTGTATGGGCTGGAGAAGTTCTGGGCCTTCTTGAAATATTCCAAAGCCAAAAATTTGGACATTGACCCCAAACTGCAAGAATACCTCGGCAAATTCCGACGTCTTGAAGACTTCCGAGTAGAT|GACACAGAATTTCCAGGTGTTGTGGTGCGACCAATTGGTGAATTTCGTAGTTCCATAGATTACCAATATCAGCTTCTGCGGTGCAATGTTGACCTTTTAAAAATTATCCAGCTGGGCCTTACATTCACAAATGAGAAGGGAGAGTATCCTTCTGGAATCAATACTTGGCAGTTCAATTTC 7 0.8555970531439481 0.7101919223308208 0.548015948670555 Y Y 3.74913061111987 3.5565722776755897 3.5565722776755897 0 0.0 0.0 Y 0.0 N Y 12019 1787 ENSG00000155506 ENSG00000155508 + - 5 5 154197167 154256353 coding coding LARP1 CNOT8 154092462 154237113 + + 0.0 154191200 154244752 + - N - 0.186306169257958 N SA468 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 11 1.22327074221832 1.20354056895673 1.22327074221832 1.20354056895673 4 - 16.2727272727273 0.980215570462455 HCT116-unstranded 1.0 114503 AAACTTCATCTCAACCAATGCGTCCGTCATTATTGAACAGCTCATGATATTCCTGCTCAGCAGAATTGCACAGCAGTTGTTGGTAGCAAGTCAAGTCCCAGACTCTGAGAGTGTGACAGATTGCCCCCACAGCGCTGCTTCTCCAGTGCTGGGGCAGCATGCCGAGTGCCCCTGTTCGTGGTGACTG|ACCGTTGGAAATGGTCACACATTCCTTCTCCCCTTAGAGCGAACACTGTCATAACCACTGAAGCGCGGGCCGAGGAGCGCCACATCGGCCACAGGCTTTGTTGCCCCGCCTTCAAAGCCACTGCGCGTGCGCATTGCTTTGACTTCA 4 0.81552312463435 0.787566498998399 0.5 Y Y 3.4367716580146896 3.7255184510618697 3.4367716580146896 0 0.9932175855416792 0.0 Y 0.0 N Y 267 332 ENSG00000147119 ENSG00000230844 - + X X 46457843 46407671 utr3p intron CHST7 ZNF674-AS1 46433219 46404928 + + 0.0 46457195 46405062 - + N - 0.752071094228619 N SA468 1 0.0 1.0 1 0 1 N Y 0.0 0.0 9 1.06542935612563 0.8418207258276591 1.06542935612563 0.8418207258276591 4 - 4.44444444444444 0.988755916818981 HCT116-unstranded 1.0 187489 GTCACCGCCCAGATCCTGCTGAAGGCCCTCACCAACTTGCCGCACACAGACTTCACCCTGTGCAAGTGCATGATCGACCAGGCACATCAAGAAGAACGGCCAATCCGACAGATTTTGTACCTCGGGGACCTGCTGGAGACCTGCCATTTCCAGGCCTTCTGGA|CCTTCACGGCATGGTGCAACTCCCACCTGCGGAAGGCAGGCACACAGATCGAGAACATTGATGAGGACTTCCGAGACGGGCTCAAGCTCATGCTGCTCCTGGAGGTCATATCAGGGGAGCGGTTACCTAAGCCGGAGCGGGGGAAGATGAGAGTGCACAAAATCAACAATG 24 0.283509996848083 0.6460748227806801 0.40606673741449 Y Y 3.33271982493408 3.65657572715995 3.33271982493408 0 0.993883344016116 0.0 Y 0.0 N Y 6889 51305 ENSG00000178982 ENSG00000130402 + - 19 19 39127595 39222223 coding coding EIF3K ACTN4 39109735 39138289 + + 0.0 39116742 39191240 + - N - - N SA468 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 18 0.947048316556116 1.11804315148986 1.11804315148986 0.947048316556116 4 - - 0.959222079122809 HCT116-unstranded 1.0 30653 GAGCTGAGATCCATCTGCACCACGGTGCTGGAATTGTTGGATAAATATTTAATAGCCAATGCAACTAATCCAGAGAGTAAGGTCTTCTATCTGAAAATGAAGGGTGATTACTTCCGGTACCTTGCTGAAGTTGCGTGTGGTGATGATCGAAAAC|CCACTTTGGAGATTTGTTAATGATACCAAAGACAAAAGAATGTTAGTTTATAAATCTGAAGATATCAAGAATGTTTCACGTTTGCAGTCTCCAAAAGTGTGTGGTTATTTAAAAGTGGATAATGAAGAGTTGCTCCCAAAAGGGTTAGTAGACAGAGAACCACCTGAAGAGCTTGTTCATCGAGTGAAA 5 1.0 0.5956040760283979 0.123790776292525 Y Y 3.59165088163073 3.31385824867498 3.31385824867498 0 0.0 0.0 Y 0.0 N Y 25225 2033 ENSG00000134308 ENSG00000151694 + - 2 2 9771143 9695921 coding coding YWHAQ ADAM17 9724101 9628615 - - 0.0 9731521 9668083 - + N - - N SA468 2 0.0 1.2 1 1 2 N Y 0.0 0.0 5 0.8944345211918872 0.7892069304634299 0.8944345211918872 0.7892069304634299 4 - - 0.946031751796325 HCT116-unstranded 1.0 29226 TGCAGCTGATTAAGGACTATCGGGAGAAAGTGGAGTCCGAGCTGAGATCCATCTGCACCACGGTGCTGGAATTGTTGGATAAATATTTAATAGCCAATGCAACTAATCCAGAGAGTAAGGTCTTCTATCTGAAAATGAAGGGTGATTACTTCCGGTACCTTGCTGAAGTTGCGTGTGGTGATGATCGAAAAC|TTTTCCTGAGTGTTCTCATGACATGAAAGCTGGCTTCCCCCAGAGTGTGTGATTCAAGAGGAAACAAGCAAGCAAGAGAGCACCTGAGATGGAGGACAGAGTTTCTTGTGTCCTAACCTCAGAAGTGACATCACTTCGGCTGCATGCTAGTGGTCACAGACCAACTATGGCCCAGTGTAGAAGAGGAAGCAGGCAT 12 0.6010323263257471 0.7835119684056109 0.739905948245336 Y Y 3.59165088163073 3.4655144718019804 3.4655144718019804 0 0.0 0.0 Y 0.0 N N 25225 2033 ENSG00000134308 ENSG00000151694 + - 2 2 9771143 9695921 coding upstream YWHAQ ADAM17 9724101 9628615 - - 0.0 9731521 9699330 - + N - - N SA468 2 1.0 1.18181818181818 1 2 1 N Y 0.0 1.0 11 1.19038712011567 1.15750349801303 1.19038712011567 1.15750349801303 4 - - 0.927444711772074 HCT116-unstranded 1.0 41224 TCAAAGAGGTCACTCTGGGGAAGTTATATGAAGCCTACAGTAAAGTCTGTCGCAAACAGCAGGTGGCGGCTGTGGACCAGTCAGAGTGTTTGTCACTTTCAGGGCTCTTGGAAGCCAGGGGCATTTTAGGATTAAAGAGAAACAAGGAAACCCGTTTGACAAAG|CATCACAGGACATGGCCCCCTCAGCCACCTAGCTGGGGCCCATCTAGGAGTGGCATCTTTTTTGGTGCCCTGAAGGCCAGCTCTGGACCTTCCCAGGAAAAGTGCCAGCTCACAGAACTGCTTGACCAAAGGACCGGCTCTTGAGACATCCCCCAACCCACCTGGCCCCCAGCTAGGGTGGGGGCTCCAGGAGACTGAGATTAGCCTGCCCTCTTTGGAC 18 0.909822884947768 0.76373588378542 0.568246293624296 Y Y 3.0460044763065297 3.25360004855864 3.0460044763065297 0 0.0 0.0 Y 0.0 N Y 2281 2870 ENSG00000094804 ENSG00000131759 + - 17 17 38459171 38513094 coding utr5p CDC6 RARA 38443885 38465444 + + 0.0 38457860 38487109 + - N - - N SA468 1 0.0 1.0 1 0 5 N Y 0.0 0.0 17 1.09173625380775 1.4534560969368202 1.4534560969368202 1.09173625380775 4 - - 0.984299532657505 HCT116-unstranded 1.0 41252 ATCTCAGTCTCCTGGAGCCCCCACCCTAGCTGGGGGCCAGGTGGGTTGGGGGATGTCTCAAGAGCCGGTCCTTTGGTCAAGCAGTTCTGTGAGCTGGCACTTTTCCTGGGAAGGTCCAGAGCTGGCCTTCAGGGCACCAAAAAAGATGCCACTCCTAGATGGGCCCCAGCTAGGTGGCTGAGGGGGCCATGTCCTGTGATGC|TTCCCCAGAGTGACCTCTTTGATTTTCAACTGCCTGATCAAGAGCATCAAAGAGCAAACCAAGATCTTCTGCTGAAGAGGGAAGGAATCTTGTGCTCCTTCTTGGCTCAAGGTCATCCTGTTACCATCAACTTCTGAGATGACTTGGGATATGTGAATAAGACCAACCCTCTTGGGAATCAGAGGCTCAGAAG 26 1.0 0.902959645461452 0.6181610105619311 Y Y 3.25360004855864 3.37229724043276 3.25360004855864 0 0.0 0.0 Y 0.0 N Y 2870 2281 ENSG00000131759 ENSG00000094804 - + 17 17 38513094 38459171 utr5p coding RARA CDC6 38465444 38443885 + + 0.0 38487109 38457282 - + N - 6.88410089987328 N SA468 1 0.0 1.0 1 0 5 N Y 0.0 0.0 25 1.26930781316202 1.2890379864236 1.2890379864236 1.26930781316202 4 - 5.56 0.990005632208546 HCT116-unstranded 1.0 40328 CCTAGGCTTCAAGCTAGAGAAAAATGTAAGCCACAGCTGTTGAACTTCCCACCTTATACCAGAAATCAGATAGTCACTATTTTGCAAGATCGACTTAATCAGGTATCTAGAGATCAGGTTCTGGACAATGCTGCAGTTCAATTCTGTGCCCGCAAAGTCTCTGCTGTTTCAGGAGATGTTCGCAAAGCACTGGATGTTT|GCAGCATCACAGGACATGGCCCCCTCAGCCACCTAGCTGGGGCCCATCTAGGAGTGGCATCTTTTTTGGTGCCCTGAAGGCCAGCTCTGGACCTTCCCAGGAAAAGTGCCAGCTCACAGAACTGCTTGACCAAAGGACCGGCTCTTGAGACATCCCCCAACCCACCTGGCCCCCAGCTAGGGTGGGGGCTCCAGGAGACTGAGATTAGCCTGCCCTCTTT 33 1.0 0.54129087807607 0.6187015050963071 Y Y 3.50322408685375 3.2829255041685297 3.2829255041685297 3 0.0 0.0 Y 0.0 N Y 2281 2870 ENSG00000094804 ENSG00000131759 + - 17 17 38459171 38513094 coding utr5p CDC6 RARA 38443885 38465444 + + 0.0 38451708 38487109 + - N - - N SA468 1 0.0 1.0 1 0 5 N Y 0.0 0.0 39 1.3548052306288898 1.4534560969368202 1.4534560969368202 1.3548052306288898 4 - - 0.988614219131046 HCT116-unstranded 1.0 137626 AAATCAGGTGATACCCTTTTGCAGGGCCCTTTTCCTGGTTCTTGAGAATGTAGCAAGATTTCCCCGCTCAGGATGGGGATGGGTCGGAGGAGCCACTCTGGAAGTTTCCCGGGCAAGAAAGTGTTGGCAATAATAATAACGGG|AGTTCTGGAAGCTGAAAGTACAACAGGAAGGTGTTGGCAGGGTTGGTTCCTTCTGACAGCTGTAAGGCAGGGTCTGTTCCACGCCTCTCCCCTGGCTTCTGGTGGTTTGCTGGTCCTCTTAGGTGTTCCTTGGCTTGCAGATGCATTATCCCGACCTCAGCCTTCACGTGGCG 3 0.8840318160057521 0.859641104053682 0.3196969757857511 Y Y 3.41472693405989 3.48271113610542 3.41472693405989 0 0.993029052965962 0.0 Y 0.0 N N 889 1148 ENSG00000171792 ENSG00000111203 - + 12 12 2998626 2968957 intron intron RHNO1 ITFG2 2985424 2921788 + + 0.0 2985553 2946122 - + N - 0.326681140233661 N SA468 1 1.0 1.0 1 0 1 N Y 0.0 1.0 6 0.7102862374170871 1.07200608054616 1.07200608054616 0.7102862374170871 4 - 2.66666666666667 0.9810048918780072 HCT116-unstranded 1.0 162560 CTGGACCTGCCACCATACAAGAGCTATGAGCAACTGAAGGAAAAGCTGTTGTTTGCCATAGAAGAAACAGAAGGATTTGGACAAGAGTAACTTCTGAGAACTTGCACCATGAATGGGCAAGAACTTATTTGCAATGTTTGTCCTTCTCTGCCTGTTGCACATCTTGTAAAATTGGACAATGGCTCTTTAGAGAGTTATCTGAGT|ACACTCCTGGAAGGAGAACCAAATCCTTCCTCACTGAAGAGCAGCTACTGTGGAATGAAACTTTGGAGTTAGATCATCGTTGAATCCAGCAAGCTACAGTGCCTGGGAGAAACAGCATTTATAAAGTATCGAGGTTACCGATACTTCCCTGAAGCTACCGGAGATAACGTTATGTGCGTGTTCAGCACAGTAAT 4 0.8538578821263308 0.8323189650870501 0.7909956178805071 Y Y 3.56488607910057 3.38759559906577 3.38759559906577 0 0.0 0.0 Y 0.0 N N 1005 2737 ENSG00000078747 ENSG00000125971 + - 20 20 33099198 33128762 utr3p upstream ITCH DYNLRB1 32951041 33104214 + + 0.0 33095713 33102984 + - N - - N SA468 1 0.0 1.0 1 0 1 N Y 0.0 0.0 7 1.1969638445362 1.2364241910593703 1.2364241910593703 1.1969638445362 4 - - 0.977534318925174 HCT116-unstranded 1.0 193748 CTGGACCAGATCCGCCAGACAATCTTTGAAAACCTGAAGATGCTGAACCATGCACCTAGTGTCCAGATTCATGACGTGCCTGCAGACCTCCTGACCTATGACAGGACTGATGAGGCTGATGCAGAGGAGAGGGGTCCTGAGGAGAACTATAGC|AGCTGGAGAGATTTACCAGCATGAGAATTAAGAAGGAGAAGGAAAAGCCCAATTCTGCTCATAGAAATTCTTCTGCATCATATGGGGATGATCCCACAGCACAGTCATTGCAAGATGTTTCAGATGAACAAGTGCTGGTTCTCTTTGAACAGATGCTGCTGGATATGAACCT 4 0.725425342612965 0.6719620759070489 0.686491034195907 Y Y 3.3761028827444 3.28436914909236 3.28436914909236 0 0.9934841012069447 0.0 Y 0.0 N Y 2211 20677 ENSG00000171720 ENSG00000131504 + - 5 5 141016437 140998622 coding utr5p HDAC3 DIAPH1 141000443 140894583 - - 0.0 141004775 140966764 - + N - - N SA468 1 0.0 1.0 1 0 1 N Y 0.0 0.0 6 0.986508663079288 0.940471592135588 0.986508663079288 0.940471592135588 4 - - 0.984351681349083 HCT116-unstranded 1.0 1734 AAGAAAAGGTATCCCTGCCATTGGTAAGCCAGCAGCTATGCGAGCCTTTGTCACATTCAAGATGCGTCGAAAAAGACTGTTTGCTATGAGGCCACAAAGAGCAGCATTTAATCCAACATAAACCGATCCATTTTCAAGTAGATTC|TTGGTTGCCAGGCGTCCATTTTTAGTAAAAGCCAAAGAACTGGGATAGAAAACACCACAAACTATGCCAATCAGTGAGCTTCTGAAAACACAGTTTTCCTTGCTTATATTATCTGGAAAACAAAAGTAAATTT 10 0.0069293298475619 0.79913716406566 0.753916176327292 Y Y 3.2629469197535097 3.48639814491089 3.2629469197535097 0 0.0 0.0 Y 0.0 N Y 711 827 ENSG00000171202 ENSG00000171204 - + 11 11 85367591 85347580 coding coding TMEM126A TMEM126B 85359011 85339629 + + 0.0 85365107 85346822 - + N - 0.792233740703794 N SA468 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 9 1.06542935612563 0.8023603793044871 1.06542935612563 0.8023603793044871 4 - 36.3333333333333 0.947970758644364 HCT116-unstranded 1.0 1735 TCCAAATCACCTGTATTCAAAGGAAAACTTACAAAACATCTGTAAGTTAAGTCTGTTGTAAGAAAAGGTATCCCTGCCATTGGTAAGCCAGCAGCTATGCGAGCCTTTGTCACATTCAAGATGCGTCGAAAAAGACTGTTTGCTATGAGGCCACAAAGAGCAGCATTTAATCCAACATAAACCGATCCATTTTCAAGTAGATTCCTT|GGGCGCTTCCTCAGTTCCCACCGGCACCACACCTGAATCCCTTGGCTTAGTCCCAGCCTCATACCCGAACACCACCATTTTGGTGGCTCATGTGACTTGCCGGTGGGCGGGGAC 7 0.644984357325643 0.388215301230521 0.0495895029802757 Y Y 3.41526549028982 3.5110433747387795 3.41526549028982 0 0.0 0.0 Y 0.0 N Y 711 827 ENSG00000171202 ENSG00000171204 - + 11 11 85367591 85347580 coding coding TMEM126A TMEM126B 85359011 85339629 + + 0.0 85365107 85339732 - + N - 1.50293718851323 N SA468 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 6 0.6708258908939161 0.466947433857529 0.6708258908939161 0.466947433857529 4 - 19.6666666666667 0.974028839555156 HCT116-unstranded 1.0 103608 ATCCATATATTCCTGCACATATTACAAAGCCTAAGGAACATAAGAAGTTGTTTCTGGTTCAGCTTCAAGAAAAAGCCTTGTTTGCAGTCCCTAAAAATTACAAGCTGGTAGCTGCACCATTGTTTGAATTGTATGACAATGCACCAGGATATGGACCCATCATTTCTAGTCTCCCTCAGCTGTTGAGCAGGTTC|TAGTAAATACCGCTTGCTGTGTTTTGATGTTGGTGGCTAAGCTCATCCAGTGTATTGTGTTTGGCCCTCTTCGAGTGAGTGAGAGACAGCATCTCAAAGACAAATTTTGGAATTTTATTTTCTACAAGTTCATTTTCATCTTTGGTGTGCTGAATGTCCAGACAGTGGAAGAGGTGGTCATGTGGTGCCTCTGGTTTGCC 4 0.7699690492488059 0.386405485081992 0.128432316737254 Y Y 3.41679307359967 3.4048456965317007 3.4048456965317007 0 0.0 0.0 Y 0.0 N Y 7119 6495 ENSG00000167005 ENSG00000159461 + - 16 16 56486111 56459450 coding coding NUDT21 AMFR 56463045 56395364 - - 0.0 56468243 56448256 - + N - - N SA468 2 0.0 1.14285714285714 1 1 1 N Y 0.0 0.0 7 1.17723367127462 1.1706569468540902 1.17723367127462 1.1706569468540902 4 - - 0.923381853870286 HCT116-unstranded 1.0 17403 CATCCATTTCATGAAAGCCTTTCAGAAGATTGTGGTTCTCTTTTATAAAGCTGATGTTCTGAGCGAAGAAGCAATACTGAAATGGTATAAGGAAGCACATGTTGCTAAAGGCAAAAGTGTTTTTCTTGACCAGATGAAGAAATTTGTTGAGTGGTTACAAAATGCAGAAGAAG|TTGGTTAGTCTGCTGCTAATTGGAATTGCTGCGTGGGGCATTGGCTTCGGGCTGATTTCCAGTCTCCGAGTGGTCGGCGTGGTCATTGCAGTGGGCATCTTCTTGTTCCTGATTGCTTTAGTGGGTCTGATTGGAGCTGTAAAACATCATCAGGTGTTGCTATTTTTTTATATGATTATTCTGTTACTTGTATTTATTGTTCAG 6 0.8311345967265742 0.690674669107464 0.8090571982055409 Y Y 3.1710543832029 3.4571608175836404 3.1710543832029 0 0.0 0.0 Y 0.0 N Y 7355 1372 ENSG00000136261 ENSG00000106537 + - 7 7 16746148 16824161 coding coding BZW2 TSPAN13 16685756 16793160 + + 0.0 16744294 16815836 + - N - - N SA468 1 0.0 1.0 1 0 3 N Y 0.0 0.0 11 1.1246198759103898 1.26930781316202 1.26930781316202 1.1246198759103898 4 - - 0.974126941910242 HCT116-unstranded 1.0 17838 AGGAGCTCCAGGAGCGTCTTTCTCAGGAATGCCCGATCAAGGAGGTGGTGCTTTATGTCAAAGAAGAAATGAAGAGGAATGATCTTCCAGAAACAGCAGTGATTGGTCTTCTGTGGACATGTATAATGAACGCTGTTGAGTGGAACAAGAAGGAAGAACTTGTTGCAGAGCAGGCTCTGAAGCACCTGA|AGTTGGTTAGTCTGCTGCTAATTGGAATTGCTGCGTGGGGCATTGGCTTCGGGCTGATTTCCAGTCTCCGAGTGGTCGGCGTGGTCATTGCAGTGGGCATCTTCTTGTTCCTGATTGCTTTAGTGGGTCTGATTGGAGCTGTAAAACATCATCAGGTGTTGCTATTTTTTG 45 0.97464096125537 0.72162441966963 0.494692048984897 Y Y 3.4937534244795 3.4152256374964702 3.4152256374964702 0 0.0 0.0 Y 0.0 N Y 7355 1372 ENSG00000136261 ENSG00000106537 + - 7 7 16746148 16824161 coding intron BZW2 TSPAN13 16685756 16793160 + + 0.0 16736686 16815836 + - N - 0.137702059498887 N SA468 1 0.0 1.0 1 0 3 Y Y 0.0 0.0 52 1.24957763990043 1.26273108874149 1.26273108874149 1.24957763990043 4 - 1.96153846153846 0.985101987745471 HCT116-unstranded 1.0 17827 ACTTGTTGCAGAGCAGGCTCTGAAGCACCTGAAGCAATATGCTCCCCTGCTGGCCGTGTTCAGCTCCCAAGGCCAGTCAGAGCTGATCCTCCTCCAGAAGGTTCAGGAATACTGCTACGACAACATCCATTTCATGAAAGCCTTTCAGAAGATTGTGGTTCTCTTTTATAAAGCTGATGTTCTGAGCGAAGAAGCAATACTGAAATGGTATAAGGAAGCACATGTTGCTAAAGGCAAAAGTGTTTTTCTTGACCAGATGAAGAAATTTGTTGAGTGGTTACAAAATGCAGAAGA|AGTTGGTTAGTCTGCTGCTAATTGGAATTGCTGCGTGGGGCATTGGCTTCGGGCTGATTTCCAGTCTCCGAGTGGTCGGCGTGGTCATTGCAGTGGGCATCTTCTTGTTCCTGATTGCTTTAGTGGGTCTGATTGGAGCTGTAAAACATCATCAG 7 2.25278462204702e-06 0.934745559176836 0.6312379776806121 Y Y 3.1710543832029 3.4152256374964702 3.1710543832029 0 0.0 0.0 Y 0.0 N Y 7355 1372 ENSG00000136261 ENSG00000106537 + - 7 7 16746148 16824161 coding intron BZW2 TSPAN13 16685756 16793160 + + 0.0 16744294 16815836 + - N - 0.137702059498887 N SA468 1 0.0 1.0 1 0 3 N Y 0.0 0.0 7 1.1048897026488 0.979931938658759 1.1048897026488 0.979931938658759 4 - 14.5714285714286 0.961697639089683 HCT116-unstranded 1.0 193390 GGCGGGTGGGGAAGGATCGCAGGCGAGATTACGAGGCGAGGCTCGCGCGCCCGCCCCCGCCCTGGCCCCCAGTGCCCACCCGGTCGGCCCGGCACAGCCATGATCAAGGCGATCCTAATCTTCAACAACCACGGGAAGCCGCGGCTCTCCAAGTTCTACCAGCCCTAC|TGCCTCCTGATGCTTGCAATCTCATTCCCAATTCACCAGCGTGCGTGAATGCAGACTCCAGATCCAGCGCAGACGCCAAGAATTCGCTCAGGGGCACCAGCTAAATAGCAAACAGATGCCATGTCAAACATGTGAAAGCCTCAGCGACTAGGGTACCGCCGGGAAAACCAGTTCCAGCCCAGGAATTT 11 1.0 0.7840427821385371 0.940620566550283 Y Y 3.5429693362217702 3.35566963758278 3.35566963758278 1 0.0 0.0 Y 0.0 N N 8277 684 ENSG00000177879 ENSG00000172901 + - 5 5 115249778 115394680 coding upstream AP3S1 LVRN 115177178 115298151 + + 0.0 115177803 115297135 + - N - - N SA468 2 0.0 1.4166666666666698 1 5 2 N Y 0.0 0.0 12 1.11146642706933 1.07858280496669 1.11146642706933 1.07858280496669 4 - - 0.942644018820173 HCT116-unstranded 1.0 1753 CTGAAACATGCCAGTGGCAATGAGGCCCAGGAGGACAATGGAGAAGAGGGTGATATAGTAGATTCGGTGCTTGGTCTTCATTCTTGGGATGAGGGCAGGACCCCGGATATTATACTTGACCGACGCACACATAATGACACAGACAGCCTCTTCCTCACACTC|ACTGGGGTTCTTGTCCTCATCATACTCATCCATGTGGTAGGTCCTGTAGCCCTCCTCAGCTGAATCCCAGAACCATTTAATCATTCTTCCTCTAGAGGACAGGTAGGAGGTATCAGAGGAGATCATGGCAGGATCACCCACTCCACGGAGCT 1 0.932855305840673 0.35757541857895003 0.404150025643321 Y Y 3.38796632142635 3.3995031233403905 3.38796632142635 1 0.0 0.0 Y 0.0 N Y 4621 75 ENSG00000151348 ENSG00000110455 - + 11 11 44266979 44105772 coding coding EXT2 ACCS 44117099 44087475 + + 0.0 44129233 44089465 - + N - 2.10759219425377 N SA468 1 0.0 1.0 1 0 1 N Y 0.0 0.0 6 0.9996621119203448 0.92731814329453 0.9996621119203448 0.92731814329453 4 - 1.83333333333333 0.968801266236385 HCT116-unstranded 1.0 137341 TTCACCTTCTAATTTGCTGCAACGTTCTTCCAGTGTCAACACTTTCTGCCGATCCTCTTCCCATGAAAGAAGCTGTTGCTGGTGCACTGCAACCATGTCATTGAGCTCTTTATCTCGATCTTTTAATTCTCCAATGAGCAACTGCAGCTCCTTCCGTTGTTTCTCGATAGTGGAAATCTCAACTTCTGACCCGATGTT|CTCTGGCCATTTTTCCTGAATGACATCAATTATGTCATCTGTAAAATCTCCCTGAATGATAATTTCATCCTCCCCTGTTACTGAGGCACCACAGGAGAATTTTTGAGCAAAAAATCTTTGTGCT 6 0.7152474810624521 0.522470535694095 0.314746353117073 Y Y 3.52936639476796 3.4278353619737403 3.4278353619737403 1 0.0 0.0 Y 0.0 N Y 384 1145 ENSG00000130783 ENSG00000139726 - + 12 12 123312075 123255611 coding coding CCDC62 DENR 123258874 123237321 + + 0.0 123262038 123253468 - + N - 0.615878786502121 N SA468 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 5 0.677402615314444 0.493254331539644 0.677402615314444 0.493254331539644 4 - 17.6 0.976471391623716 HCT116-unstranded 1.0 185825 CTGCACACCAGGGGTCCCCCAGAGTCACCCTGACAAGAGTCCTTCCCGCCCTGGGGAACTCCTGCACAGACCATGCCAGGCGTGATGGTTCTAGGATAGGCCTTCTGGCACACCTCATCCGGGGAGATGTTGATGTTCACGCATTGCAGAGAGGCGGGGTACCTGGC|TGTCACGATGTGCGTGGCTCCCACGCGGCGCGCCCCTTCCTCCAGCGCCCGGCGCCGCAGCACTCCACAGAAGGTGCAGCAGGAGCGGCTGCGGCCGGAGCCGGCTGTGCTGCGGGCCACGGCGTCCATCGTCCAGCCCCCAAAGAGGTCTTCGTAGGCCACGACCGTGAGCGGCAGCTCCCAGCGCGCCGCCTGGCGCCGCACGGCCGCCAACGCCGCGTCCCGGTAGCCACC 4 0.637104870577093 0.4883575384848301 0.22083230706655 Y Y 3.67849247003875 3.35975787397237 3.35975787397237 1 0.0 0.0 Y 0.0144338189293056 N Y 110 1011 ENSG00000129437 ENSG00000142544 - + 19 19 51587502 51611647 coding coding KLK14 CTU1 51580574 51600863 - - 0.0 51582208 51607319 + - N - 0.40828510963264 N SA468 1 0.0 1.0 1 0 1 N Y 0.0 0.0 11 0.940471592135588 1.46660954577787 1.46660954577787 0.940471592135588 4 - 19.0909090909091 0.958099706425681 HCT116-unstranded 1.0 164324 GTGGAGCATCCTTTTGGAGGTGGCAACCACCAGCACATCGGCAAGCCCTCCACCATCCGCAGAGATGCCCCTGCTGGCCGCAAAGTGGGTCTCATTGCTGCCCGCCGGACTGGACGTCTCCGGGGAACCAAGACTGTGCAGGAGAAAGAGAACTAGTGCTGAGGGCCTCAATAAA|GCCAAATAGTTGCATCACATGTATCTAATCCGAGAGTCTCATGCTTCTGGTAGCTCCTCAGTGACCAGCTCCTGCTCACTGCCCTCAGAAAGCCCAACCCTCAGGCAATGGCGGCCTTGTTCCTGTCTGCCCCACCCCAGGCCGAGGTGACCTTCGAGGACGTGGCTGTGTACCTCTCCCGGGAGGAATG 26 1.0 0.867666285794183 0.717281450277784 Y Y 3.40744620240479 3.6759318169590096 3.40744620240479 1 0.0 0.0 Y 0.0 N Y 102870 1410 ENSG00000161016 ENSG00000196378 + - 8 8 146017972 146012730 utr3p utr5p RPL8 ZNF34 146015150 145997611 - - 0.0 146015170 146005665 - + N - - N SA468 4 0.0 2.3777777777777795 1 41 1 Y Y 0.0 0.0 45 1.16408022243356 1.19038712011567 1.19038712011567 1.16408022243356 4 - - 0.903166291748807 HCT116-unstranded 1.0 187040 GGCTCCCTGCTTCTCGCCGCCGGCACCCCAGGCATGCGCCACTCGCTCCCCAACTCCCGTATCATGATCCACCAGCCCTCAGGAGGCGCCCGGGGCCAAGCCACAGACATTGCCATCCAGGCAGAGGAGATCATGAAGCTCAAGAAGCAGCTCTATAACATCTACGCCAAGCACACCAAACAGAGCCTGCAGGTGATCG|GTACCGCCAATGGCTTTTGGCGGGGGCGTTCCCCAACCCTGCCCTCTCTCATGACCCCGCTCCGGGATTATGGCCGGGACTGGGCTGCTGGCGCTGCGGACGCTGCCAGGGCCCAGCTGGGTGCGAGGCTCGGGCCCTTCCGTGCTGAGCCGCCTGCAGGACGCGGCC 10 1.0 0.947399454827132 0.951196096080109 Y Y 3.65591337975064 3.34831435801417 3.34831435801417 0 0.0 0.0 Y 0.0442708333333334 N N 4053 549 ENSG00000125656 ENSG00000125652 + - 19 19 6368915 6375261 coding utr5p CLPP ALKBH7 6361463 6372444 + + 0.0 6366374 6372763 + - N - 0.0211842053781154 N SA468 1 0.0 1.0 1 0 2 N Y 0.0 0.0 7 1.09173625380775 1.11146642706933 1.11146642706933 1.09173625380775 4 - 0.285714285714286 0.978192124298648 HCT116-unstranded 1.0 162487 AGCAGGTCCTGAGCCTCGAGCCGCAGCACGAGCTCAAATTCCGAGGTCCCTTCACCGATGTTGTCACCACCAACCTAAAGCTTGGCAACCCGACAGACCGAAATGTGTGTTTTAAGGTGAAGACTACAGCACCACGTAGGTACTGTGTGAGGCCCAACAGCGGAATCATCGATGCAGGGGCCTCAATTAATGTATCTG|ATGTCTTGAACAAGTCAGCAAAGAAAAACAGTTCCGCCTTTGGAATGTATGAAAATGAAGACCGTTGCAGGAGGTCTTGAGCCACAGAGCTGGCTCCAGAGGCATTGGGAGGAGAAACGCGGCAGGCCTGGCTCACTCATTATATTTCAAGATCTATCCCAG 15 0.7692749202200341 0.46565169969994 0.251776790398445 N Y 3.68105312311849 3.49744043328497 3.49744043328497 5 0.993844259772238 0.0 Y 0.0 N Y 2471 93 ENSG00000124164 ENSG00000231290 + - 20 20 57026157 57194944 coding intron VAPB APCDD1L-AS1 56964178 57090435 + + 0.0 56993419 57193796 + - N - - N SA468 1 0.0 1.0 1 0 1 N N 0.0 0.0 15 1.3153448841057198 0.9996621119203448 1.3153448841057198 0.9996621119203448 4 - - 0.940692166359408 HCT116-unstranded 1.0 127264 TGCATAAATTCCAGCTTTATTACCTGCTACTGCTTTACAAAACCAGAACTGATCTTCACATTGGAACAAGGAGAAGATCCATGGTTATTAGAGAAAGAGAAAGGATTTCTAAGCAGGAACTCCCC|AGGAAGGAGGGAGCCCCAGGAACAGGAGTCCCACCGAAGAACTGCTCTCTGACAGAACAGAGACCTCCTCACCAGGGCTTCCAAACAGATGCAGAAGAACCCAGAAAGGAGCAGGTCTTGATTTGCCCAACCAGCGGCACTTCTTCATCCCCTTGCCCAGAGAGCACCAGACTTGGTGATGTCGCCACATCCAGAAGCCATCACAGATTGT 7 0.9165434891752958 0.5751068313038411 0.3687620223193879 Y Y 3.20699822305859 2.9616302550224103 2.9616302550224103 0 0.0 0.0 Y 0.0 N Y 122 1180 ENSG00000196597 ENSG00000081386 + - 9 9 99637905 99540411 coding utr5p ZNF782 ZNF510 99578754 99518147 - - 0.0 99589362 99538527 - + N - - N SA468 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 6 0.6445189932118011 0.8286672769866021 0.8286672769866021 0.6445189932118011 4 - - 0.9774260302548828 HCT116-unstranded 1.0 111047 CCCGGATGAATATGTGGTGACCGACCCTGAGCAAGAGAAGAACTTTGGCTTTAGCCTTCAAGACGCACTGAGCAGGGCTCGGGAGCGAAGGCTGCTAGAGGGCTATGAGATCTATGTGACCCCTGGAGTCCAGCCACCACCACCTCAGATGGGAGAGATTATTAGCTGCTGTGGAGGCACATACCTACCCAGCATGCCTCGGTCCTATAAG|ATGGGAAAACTAGACGAGCTGAGATTCAACCCACGTGAGCGGCTGCAGAGCCGCTACCCTTAACAGCTCTCTCTCGGGATTCTAACATTCCCTTCTGTGACGGAGAGACAGCAGGCCGGGACACGCATCCCAGGACGGATCCACAGCTGGATGGGGAAGGCTGCGCCAGGCGGGCCGGAAGCCTGGCGGTGGCGTGCAGGAGCCCCGCCCTCCTGGGCTGGATTCAGCCGGGGGCGGGGCC 8 0.9346520367410608 0.954866260224337 0.74289249443113 N Y 3.700409212917549 3.57063922744582 3.57063922744582 0 0.995271125618572 0.0 Y 0.19136248077587 N Y 4684 806 ENSG00000137337 ENSG00000137404 + - 6 6 30685666 30659197 coding utr5p MDC1 NRM 30667584 30655824 - - 0.0 30670330 30659058 - + N - - N SA468 1 0.0666666666666667 1.0 1 0 1 N N 0.0 0.0666666666666667 7 1.2956147108441298 1.1969638445362 1.2956147108441298 1.1969638445362 4 - - 0.980563534372732 HCT116-unstranded 1.0 158605 CCCAGAACTTGAAGCCACCAGACCCCACATGGAACCAAAGGCCTCCTGTCCAGCTGCTGCACCCTTGATGGAGAGAAAATTCCATGTTCTTGTGGGTGTCACGGGGAGTGTCGCAGCCCTGAAGTTGCCTCTTCTGGTGTCAAAGCTTTTGGACATTCCTGG|GGTCAGAAGTTGAGTAGCAGGGGCCTAGGAGGGCTCGAAGCCTTCACAGCGATGGCAGAGAAGCGACCCCTGAGAACCCTGGGGCCTGTGATGTATGGCAAGCTGCCCCGCTTAGAGACAGACTCCGGGCTCGAGCACAGCCTGCCCCACTCTGTTGGTAACCAGGATCCCTGCACCTAC 5 0.7706259428397441 0.7750466684256702 0.6153821586252889 N Y 3.46720988898117 3.39590940049075 3.39590940049075 0 0.0 0.0 Y 0.0 N Y 163 8326 ENSG00000138621 ENSG00000167173 + - 15 15 75409803 75504510 coding utr5p PPCDC C15orf39 75315896 75487984 + + 0.0 75320794 75498340 + - N - - N SA468 1 0.0 1.0 1 0 1 N N 0.0 0.0 8 1.03912245844352 1.07200608054616 1.07200608054616 1.03912245844352 4 - - 0.988001643267703 HCT116-unstranded 1.0 178604 CTTGATCAGCTGAAAAGGAAACAGCCTGAGCTGTTAATGATGCTAAACTGTTCAGAAAACAACAAAGAAGAGACAATTCCGGATGTGGATGTAGAAGAGGCAGTTCTGGGGCAGTATACTGAAGAACCTCTAAGTCAAGAGCCATCTGTAGATGCTGGTGTGGATTGTTCATCAATTGGCGGGGTTCCATTTTTCCAG|AGCTTGTCTCTGTCCTTGGAACACAGAAGAGCACATTGAATTCATCAGGCCATGGGATGAGAATGATGACGGTGGAGATGGCACAACACTGGAGCTGACCCACAGAGGGATCAATGATTCCCAAATAACCCTTCACTGATAGTTTCCAGGGGCAAGGCACTACCTGAAAT 5 1.0 0.8128193179706501 0.11023532231325 N Y 3.2823030095525803 3.66951632120446 3.2823030095525803 2 0.0 0.00271002710027113 Y 0.00271002710027113 N N 1993 490 ENSG00000138160 ENSG00000152804 + - 10 10 94415150 94455403 coding upstream KIF11 HHEX 94353043 94447945 + + 0.0 94410274 94443354 + - N - - N SA468 1 0.0 1.0 1 0 1 N N 0.0 0.0 9 1.2364241910593703 1.07858280496669 1.2364241910593703 1.07858280496669 4 - - 0.9833112195634908 HCT116-unstranded 1.0 118521 GAAGGACCTGTTTGGGGAGGTTGATGCCGCCTTACCTTTGGACATCCTAACCTATGAAGAGAAGACCTTGTCAGCCATCTTGAGAATATGTAGCAGTGGTCTTGTCAAATTGTGGAGCTCTTTGACCCTGTTAGGATCCTATAAAGGCAAAAAATGTGCTTTCCGGGTGATT|CAGGAATATATTATTCGAGTGCAAAGAGGAATTTCTGTGGAAAACAGCTGGCAGATTGTTAGAAGATACAGTGACTTTGATTTGCTTAACAACAGCTTACAGATTGCAGGCCTAAGTCTACCTCTTCCTCCCA 7 0.06817223080711401 0.825531306296654 0.319468242226196 Y Y 3.4921512932561405 3.5429693362217702 3.4921512932561405 0 0.0 0.0 Y 0.0 N Y 637 989 ENSG00000163684 ENSG00000168297 + - 3 3 58305816 58411748 coding coding RPP14 PXK 58291974 58318607 + + 0.0 58302720 58351601 + - N - - N SA468 1 0.0 1.0 1 0 4 Y Y 0.0 0.0 5 0.947048316556116 0.7760534816223729 0.947048316556116 0.7760534816223729 4 - - 0.935136430992187 HCT116-unstranded 1.0 118597 CGAGGAGAAGCCAAACGTAAAGACACCAGGAGTTTCTCGGGCCCAGCTGTGGCTGCTGCCGGGGAGCCCCAAGCCTTGGCGGGTCCTTGCGGCGAATAGGAGTCTGGTCAGGCGTCAGGCTAGTCCGACGAAGAGTGGAGAATTTCAAGATTGTGGAGTTGGACTGAATGCTGCACAGTTCAAACAGCTGCTTATTTCGGCTGTGAAGGACCTGTTTGGGGA|GGAATATATTATTCGAGTGCAAAGAGGAATTTCTGTGGAAAACAGCTGGCAGATTGTTAGAAGATACAGTGACTTTGATTTGCTTAACAACAGCTTACAGATTGCAGGCCTAAGTCTACCTCTTCCTCCCAAAAAATTGATTGGTAACATGGATCGTGAATTCATAGCTGAAAGGCAGAAAGGTCTTCAGAACTATCTCAACGTGATCACAACAAATCATATCTTGTCTAATTGTGAGCTGGTTAAGAAGT 14 0.39359232557368895 0.505958538293274 0.8036017083678759 Y Y 3.6000045358490698 3.5016965035439 3.5016965035439 0 0.0 0.0 Y 0.00210970464135007 N Y 637 989 ENSG00000163684 ENSG00000168297 + - 3 3 58305816 58411748 coding coding RPP14 PXK 58291974 58318607 + + 0.0 58296318 58351601 + - N - - N SA468 1 0.004464285714285711 1.0 1 0 4 Y Y 0.004464285714285711 0.0 10 1.27588453758255 1.53895351440369 1.53895351440369 1.27588453758255 4 - - 0.966122452756788 HCT116-unstranded 1.0 119185 GCTTATTTCGGCTGTGAAGGACCTGTTTGGGGAGGTTGATGCCGCCTTACCTTTGGACATCCTAACCTATGAAGAGAAGACCTTGTCAGCCATCTTGAGAATATGTAGCAGTGGTCTTGTCAAATTGTGGAGCTCTTTGACCCTGTTAGGATCCTATAAAGGCAAAAAATGTGCTTTCCGGGTGATT|CAGATTGCAGGCCTAAGTCTACCTCTTCCTCCCAAAAAATTGATTGGTAACATGGATCGTGAATTCATAGCTGAAAGGCAGAAAGGTCTTCAGAACTATCTCAACGTGATCACAACAAATCATATCTTGTCTAATTGTGAGCTGGTTAAGAAGTTTTTAGATCCAAACAACTATTCC 5 0.5072816618856559 0.7255139272021508 0.7913447426687671 Y Y 3.4921512932561405 3.5167965230840297 3.4921512932561405 1 0.0 0.0 Y 0.0 N Y 637 989 ENSG00000163684 ENSG00000168297 + - 3 3 58305816 58411748 coding coding RPP14 PXK 58291974 58318607 + + 0.0 58302720 58368241 + - N - - N SA468 1 0.0 1.0 1 0 4 Y Y 0.0 0.0 5 1.21011729337726 1.2956147108441298 1.2956147108441298 1.21011729337726 4 - - 0.966122452756788 HCT116-unstranded 1.0 17511 GGTCCCACTCTCTGTCATTCCAATCGTCCCCTCGACGTCTTTCATCTCTCTCGCGGGAACGGTCGTAGTCGCTGCGCTCTCTTCTGAACTTGTCCCTGCGCCTTCGATCGTACTCGTCATCACTGTCACCCATGGCACGGTCTGAGGGGG|CCTGTGAAAGTCCTCAATGCAGTGGATCTGGCTCGTAGCATCCACTGTGAAGGGGATGCCGTCGAGGCCGCGGTGACACACCACGCAGGTGAAGCAGCCAGGGTGGTAGGCCTTCCCCATAGCCCGCAGGATCCGGTCCAGGATGGGCTGGGAGCACGTGGCACATTTCTCCAGGGTGGCCTGTTGGGAAGGAAGG 10 0.7497554725558659 0.791868522265936 0.3356957150997589 Y Y 3.4048855493250496 3.61464054707278 3.4048855493250496 2 0.0 0.0 Y 0.0 N Y 12946 3242 ENSG00000087087 ENSG00000087077 - + 7 7 100486285 100471076 coding intron SRRT TRIP6 100472733 100464760 + + 0.0 100473194 100469343 - + N - 0.616387692999193 N SA468 1 0.0 1.0 1 0 1 N Y 0.0 0.0 5 0.9996621119203448 0.8615508990892451 0.9996621119203448 0.8615508990892451 4 - 154.2 0.9763399486019352 HCT116-unstranded 1.0 1374 CATGCAGAATCGACTCAATAAAGTCATCAAAAGTGTGGGGAAGATCGAGCACTCCTTCTGGAGATCCTTTCACACCGAGCGGAAGACAGAACCAGCCACAGGTTTCATCGACGGTGACTTGATTGAGAGTTTCCTGGATATTAGCCGCCCCAAGATGCAGGAGGTGGTGGCAAACCTACAGTATGACGATGGCAGCGGTATGAAGCGAGAGGCCACTGCAGACGACCTCATCAAG|CCCTCTGCTCCTTCGGCTGTGGGAGTGGCATCTGCATCGCTCCCAATGTCTGCTCCTGCCAGGATGGAGAGCAAGGGGCCACCTGCCCAGAAACCCATGGACCATGTGGGGAGTACGGCTGTGACCTTACCTGCAACCATGGAGGCTGTCAGGAGGTGGCCCGAGTGTGCCCCGTGGGCTTCTCGATGACGGAGACAGCTGTTGGCATCAGG 5 0.00256145530728655 0.497957856879716 0.438285280521562 Y Y 3.76017289949394 3.3452896966180097 3.3452896966180097 0 0.0 0.0 Y 0.0 N N 23968 514 ENSG00000167986 ENSG00000167992 + - 11 11 61110068 61062896 coding coding DDB1 VWCE 61066923 61025762 - - 0.0 61067638 61058825 - + N - - N SA468 1 0.0 1.0 1 0 1 N Y 0.0 0.0 5 0.914164694453473 1.14435004917197 1.14435004917197 0.914164694453473 4 - - 0.906214112676274 HCT116-unstranded 1.0 1373 GGAAGACAGAACCAGCCACAGGTTTCATCGACGGTGACTTGATTGAGAGTTTCCTGGATATTAGCCGCCCCAAGATGCAGGAGGTGGTGGCAAACCTACAGTATGACGATGGCAGCGGTATGAAGCGAGAGGCCACTGCAGACGACCTCATCAAG|CCCTCTGCTCCTTCGGCTGTGGGAGTGGCATCTGCATCGCTCCCAATGTCTGCTCCTGCCAGGATGGAGAGCAAGGGGCCACCTGCCCAGAAACCCATGGACCATGTGGGGAGTACGGCTGTGACCTTACCTGCAACCATGGAGGCTGTCAGGAGGTGGCCCGAGTGTGCCCCGTGGGCTTCTCGATGACGGAGACAGCTGTTGGCATCAGGTGTACAGACA 5 0.809862505975067 0.497957856879716 0.438285280521562 Y Y 3.76017289949394 3.3452896966180097 3.3452896966180097 0 0.0 0.0 Y 0.0 N N 23968 514 ENSG00000167986 ENSG00000167992 + - 11 11 61110068 61062896 coding coding DDB1 VWCE 61066923 61025762 - - 0.0 61067638 61058825 - + N - - N SA468 1 0.0 1.0 1 0 1 N Y 0.0 0.0 11 1.15750349801303 1.2430009154799 1.2430009154799 1.15750349801303 4 - - 0.973897680846046 HCT116-unstranded 1.0 104081 GGCCGCCGGGCCCCTGGCCAGGGACACCCTCTCCCCCGAACCCGCAGCCCGCGAGGCTCCTCTCCTGCTGCCCTCGTGGGTTCAGGAGCTGTGGGAGACGCGACGCAGGAGCTCCCAGGCAGGGATCCCCGTCCGTGCGCCCCGGAGCCCGCGCGCCCCAGAGCCTGCGCTGGAACCGGAGTCCCTGGACTTCAGCGGAGCTGG|CCAGGTGGTGCAAAGGATCAAGGCTGTGGAGGGGCAGACTCGGCTGCTGGTGGTGGACCAGGAGACAGATGAGGAGCTCCGCCGGCGGCAGCTGACCTGTACCGAGGAGATGGCCCAGCGAGGGCTCCCACCCGCCCACGACCCCTGGGAGCCGAAGCCAGACTGGGCACACACCGGCAGCC 5 0.8865306570163309 0.954420064742176 0.358525387875455 Y Y 3.54144175291192 3.3342075554505803 3.3342075554505803 6 0.9945196921941108 0.0 Y 0.0 N Y 6174 970 ENSG00000183971 ENSG00000065054 + - 16 16 2070756 2089027 coding coding NPW SLC9A3R2 2059927 2075357 + + 0.0 2070313 2079583 + - N - - N SA468 1 0.0693069306930693 1.0 1 0 1 Y Y 0.0693069306930693 0.0 16 1.3153448841057198 1.1509267735925 1.3153448841057198 1.1509267735925 4 - - 0.944293666411853 HCT116-unstranded 1.0 17812 AGTGCACTCAACCTTGCTCTCCGGTTCGTGATCAGCAGCCGAGAAATACACAACCTCTTGCACTTCATCTCTGGGCCGGGCTGAATTTTTCCCAAATACCACCAGACCATCCTTAGCACGTGGAGGGAAGGCAACAAAACAGTAACTTGGAGGAGCTGCAGCCAT|CGTGGAGTGAAATAAGGAGCCGTCCTTTTCTAAGTAGCCTTCATAGTGGACCAACATCAAATCCCCTCCTTTGGTCTTGCGATGGCAGATGAATGGCTTCTGGAGAACTTCAATTTTCACTTCTGGTTCAGGGATCAAAGCCCCAATCAAAGAAGTGACGAACAGAGTCAAGACCG 17 0.734453401581669 0.790601874381462 0.48198158678283 Y Y 3.5001689202340494 3.59425138750382 3.5001689202340494 4 0.957699805068226 0.0 Y 0.0 N Y 8084 322 ENSG00000136193 ENSG00000106080 - + 7 7 30029905 30066300 coding intron SCRN1 FKBP14 29959719 30050203 - - 0.0 30008684 30065928 + - N - 0.237693340165612 N SA468 1 0.0 1.0 1 0 1 N Y 0.0 0.0 13 0.92731814329453 1.1048897026488 1.1048897026488 0.92731814329453 4 - 1.46153846153846 0.977673510311776 HCT116-unstranded 1.0 162840 AATGGCGCTGGCCATGATCAGCCCACTGAGGAAGAGGAAGTTGGTGTCGAGGAAGTACTGGGGGCAGACCTTGTTGGAGGGCAAGATGCCCATGAAGGGGAAGAGGACGATGGGCAGCAGCGCCGTCACTGAGAGCGGCAGGGCCTCCGTGCACCAGTACACCGCCATGAGCAGGATGACAAACAAGCAGCGGCCTTCC|AGCGCGGCGACAGCGGAGGAGCGCCCGGGCCTCCTGCACCGTCCGCCGTCTGCCAAGCCGCGCCTCCAGCGCCGGGTGCCGGTAGCCCTTGGGGAAGCGGTGCTTGATCACCGCCGCGCGGCCCTGGAAGCGGCCACGGAACACGCGCGCCTCG 7 1.0 0.864966897406254 0.855203887793511 Y Y 3.54400240599166 3.11013383567725 3.11013383567725 1 0.987049673490352 0.0 Y 0.987049673490352 N Y 80 830 ENSG00000158296 ENSG00000172315 - + 20 20 45304714 45318418 coding coding SLC13A3 TP53RK 45186463 45313004 - - 0.0 45242364 45317771 + - N - 1.1785159070421 N SA468 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 5 1.16408022243356 0.979931938658759 1.16408022243356 0.979931938658759 4 - 13.4 0.956333243922294 HCT116-unstranded CGHSA0579 1.0 41241 GAAATTTGTCATCAATTATGACTACCCTAACTCCTCAGAGGATTATATTCATCGAATTGGAAGAACTGCTCGCAGTACCAAAACAGGCACAGCATACACTTTCTTTACACCTAATAACATAAAGCAAGTGAGCGACCTTATCTCTGTGCTTCGTGAAGCTAATCAAGCAATTAATCCCAAGTTGCTTCAGTTGGTCGAAGACAGAGGTTCAGGT|GCCTTGGAACACTATGTTAATTGCCTGGATCTGGTAAACAAGAGGCTACCTTATGGCCTTGCTCAGATTGGAGTGTGTTTTCATCCTGTTTTTGACACTAAGCAGATACGAAATGGTGTTAAAAGTATTGGTGAGAAGACTGAAGCTTCGTTAGTATGGTTTACTCCTCCGAGAACTTCAAACCAGTG 16 0.8785984869059409 0.516699785934753 0.5217026994393139 Y Y 3.49272035470961 3.65913638023969 3.49272035470961 0 0.0 0.0 Y 0.0130932896890343 N Y 34949 695 ENSG00000108654 ENSG00000256525 + - 17 17 62504317 62493154 coding coding DDX5 POLG2 62495734 62473902 - - 0.0 62496667 62489138 - + N - - N SA468 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 16 1.41399575041365 1.21669401779779 1.41399575041365 1.21669401779779 4 - - 0.980215570462455 HCT116-unstranded 1.0 1172 CCTTTAAATCTACAAGACAGCAGCCTTCCCGAAATGTCACTACTAAGAATTATTCAGAGGTGATTGAGGTAGATGAATCAGATGTGGAAGAAGACATTTTTCCTACCACTTCAAAGACAGATCAAAGGTGGTCCAGCACATCATCCAGCAAAATCATGTCCCAGAGTCAAGTATCGAAAGGGGTTGATTTTGAATCAAGTG|AGGTCATCATGCACCCCTTGAAACCCCGGATCTCAATCACAAAGGGTGTCATCTACATCGCTGTCATCTGGACCATGGCTACGTTCTTTTCACTCCCACATGCTATCTGCCAGAAATTATTTACCTTCAAATACAGTGAGGACATTGTGCGCTCCCTCTGCCTGCCAGACTTCCCTGAGCCAGCTGACCTCTTCTGGAAGTACCTGGACTTGGCCACCTTCATCCTGCT 6 1.0 0.4261055104471721 0.358739257759552 N Y 3.30488209984069 3.4948797802052303 3.30488209984069 0 0.0 0.0 Y 0.0 N Y 468 403 ENSG00000020922 ENSG00000123901 + - 11 11 94227074 94134585 coding coding MRE11A GPR83 94152895 94110477 - - 0.0 94163077 94126784 - + N - - N SA468 1 0.0 1.0 1 0 2 Y N 0.0 0.0 13 1.16408022243356 1.32192160852625 1.32192160852625 1.16408022243356 4 - - 0.9814270471539748 HCT116-unstranded 1.0 614 GTCTCAAAGAGGAAGAGCCTTTAAATCTACAAGACAGCAGCCTTCCCGAAATGTCACTACTAAGAATTATTCAGAGGTGATTGAGGTAGATGAATCAGATGTGGAAGAAGACATTTTTCCTACCACTTCAAAGACAGATCAAAGGTGGTCCAGCACATCATCCAGCAAAATCATGTCCCAGAGTCAAGTATCGAAAGGGGTTGATTTTGAATCAAGTGAGG|TTCGCTTTGTGAACAGCACATGGATATTTGGGAAGGGCATGTGCCATGTCAGCCGCTTTGCCCAGTACTGCTCACTGCACGTCTCAGCACTGACACTGACAGCCATTGCGGTGGATCGCCACCAGGTCATCATGCACCCCTTGAAACCCCGGATCTCAATCACAA 5 0.9922945571681858 0.8382555004175921 0.534381945580701 N Y 3.30488209984069 3.48639814491089 3.30488209984069 0 0.0 0.0 Y 0.00258397932816545 N Y 468 403 ENSG00000020922 ENSG00000123901 + - 11 11 94227074 94134585 coding coding MRE11A GPR83 94152895 94110477 - - 0.0 94163077 94129690 - + N - - N SA468 2 0.0 1.08333333333333 1 1 2 Y N 0.0 0.0 12 1.3548052306288898 0.8286672769866021 1.3548052306288898 0.8286672769866021 4 - - 0.9898374802002842 HCT116-unstranded 1.0 63763 CAGGGACAAAAGCCTCCGCCTGCTCCCGCAGACGGGGCTCATCTGCCGCCGCCGCCGCGCTGAGGAGAGTTCGCCGCCGTCGCCGCCCGTGAGGATCTGAGAGCCATGTCGGCCAGCAGCCTCTTGGAGCAGAGACCAAAAGGTCAAGGAAACAAAGTACAAAATGGATCTGTACATCAAAAGGATGGATTAAACGATGATGATTTTGAACCTTACTTGAGTCCACAGGCAAGGCCC|GTACACTAAGATGAAGACGGCCACCAACATCTACATCTTCAACCTGGCCTTAGCCGATGCGCTGGCCACCAGCACGCTGCCTTTCCAGAGTGCCAAGTACCTGATGGAGACGTGGCCCTTCGGCGAGCTGCTCTGCAAGGCTGTGCTCTCCATCGACTACTACAATATGTTCACCAGCATCTTCACGCTCACCATGATGAGTGTTGACCG 32 1.0 0.951872476485744 0.581114283589651 Y Y 3.65488030998075 3.75594733445854 3.65488030998075 0 0.0 0.0 Y 0.0 N Y 12384 372 ENSG00000198492 ENSG00000116329 + - 1 1 29096287 29190208 coding coding YTHDF2 OPRD1 29063133 29138654 + + 0.0 29064850 29185466 + - N - - N SA468 1 0.0 1.0 1 0 1 N Y 0.0 0.0 23 1.53895351440369 1.41399575041365 1.53895351440369 1.41399575041365 4 - - 0.9878187532848772 HCT116-unstranded 1.0 50749 CCATGCCTGTGGCCAAGCTGGCTGGCTTCCTGGACCTCACAGAGCAGGAGTTCCGGATCCAGCTTCTTGTCTTCAAACACAAGATGAAGAACCTCGTGTGGACCAGCGGTATCTCAGCCCTGGATGGTGAATTTCAGTCAGCCTCAGAGGTTGACTTCTACATTGATAAGGACATGATCCACATCGCGGACACCAAGGTCGCCAGGCGTTATGGGGATTTCTTCATCCGTCAGATCCACAAATTTGAGGA|GAGATTTTGATTCGCTTTCCAAGGACAATGTCTTCGAGAATAACCGTTTGGCCTTTGAAGTGGCTGAGAAGGAGCTGGGGATCCCCGCTCTCCTGGACCCCAATGACATGGTCTCCATGAGCGTCCCTGACTGCCTCAGCATCATGACCTATGTGTCCCAGTATTACAACCACTTCTGC 19 0.6958204854070561 0.984912855020169 0.6173722576351011 N Y 3.3400005565891804 3.5429693362217702 3.3400005565891804 1 0.0 0.0 Y 0.0 N Y 20904 1644 ENSG00000100129 ENSG00000100139 + - 22 22 38285414 38338829 coding utr5p EIF3L MICALL1 38244875 38301664 + + 0.0 38282852 38307959 + - N - - N SA468 3 0.0 1.61538461538462 1 5 2 N N 0.0 0.0 13 1.4337259236752298 1.20354056895673 1.4337259236752298 1.20354056895673 4 - - 0.9500135824188648 HCT116-unstranded 1.0 63657 CAAGAATGCTGATGGGACTATATGCTACGACTCCACCCACTACAAGGAGACTTGGAAGGCTCTGGAGGCACTGGTGGCTAAGGGGCTGGTGCAGGCGCTGGGCCTGTCCAACTTCAACAGTCGGCAGATTGATGACATACTCAGTGTGGCCTCCGTGCGTCCAGCTGTCTTGCAGGTGGCAGGTCCAGCGGAAAGTGATCTGCATCCCCAAAAGTATCACTCCTTCTCGAATCCTTCAGAACATCA|AGGCTCTATTCCGTTCGCTGGTTCGCCACCTCAGGGGAACGATGGCCATGGAGTCCACAGCCACTGCCGCCGTCGCCGCGGAGCTGGTTTCTGCCGACAAAATTGAAGATGTTCCTGCTCCTTCTACATCTGCAGATAAAGTGGAGAGTCTGGATGTGGATAGTGAAGCTAAGAAACTATTGGGTTTAGGACAGAAACATCTGGTGATGGGGGATATTCCAGCAGCTGTCAATGCATTCCAGGAAGCA 10 1.20468636157225e-06 0.902488578802702 0.7786608687802191 Y Y 3.35356364524965 3.74913061111987 3.35356364524965 0 0.0 0.0 Y 0.0 N Y 3738 6685 ENSG00000117448 ENSG00000132780 + - 1 1 46035721 46084566 coding utr5p AKR1A1 NASP 46016215 46049518 + + 0.0 46034671 46049780 + - N - - N SA468 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 5 1.38768885273153 0.953625040976645 1.38768885273153 0.953625040976645 4 - - 0.918596861409685 HCT116-unstranded 1.0 63799 TGGTGGCTAAGGGGCTGGTGCAGGCGCTGGGCCTGTCCAACTTCAACAGTCGGCAGATTGATGACATACTCAGTGTGGCCTCCGTGCGTCCAGCTGTCTTGCAGGTGGCAGGTCCAGCGGAAAGTGATCTGCATCCCCAAAAGTATCACTCCTTCTCGAATCCTTCAGAACATCA|AGGCTCTATTCCGTTCGCTGGTTCGCCACCTCAGGGGAACGATGGCCATGGAGTCCACAGCCACTGCCGCCGTCGCCGCGGAGCTGGTTTCTGCCGACAAAATTGAAGATGTTCCTGCTCCTTCTACATCTGCAGATAAAGTGGAGAGAATGGAGAATGGT 11 1.0 0.7180604318194541 0.6897323648283531 Y Y 3.35356364524965 3.74913061111987 3.35356364524965 3 0.0 0.0 Y 0.0 N Y 3738 6685 ENSG00000117448 ENSG00000132780 + - 1 1 46035721 46084566 coding utr5p AKR1A1 NASP 46016215 46049518 + + 0.0 46034671 46049780 + - N - - N SA468 2 0.0 1.27272727272727 1 3 1 Y Y 0.0 0.0 11 1.04569918286404 0.9996621119203448 1.04569918286404 0.9996621119203448 4 - - 0.969452761393322 HCT116-unstranded 1.0 193231 CAGGAAAAAACTCCTAAAACACCAAAAGGACCTAGTTCTGTAGAAGACATTAAAGCAAAAATGCAAGCAAGTATAGAAAAAGGTGGTTCTCTTCCCAAAGTGGAAGCCAAATTCATCAATTATGTGAAGAATTGCTTCCGGATGACTGACCAAG|AGGTGCTGGTTGCCGAGGAGAACGTGGACTTCCGCATCCACGTGGAGAACCAGACGCGGGCTCGGGACGATGTGAGCCGTAAGCAGCTGCGGCTGTACCAGCTCTACAGCCGGACCAGTGGGAAACACATCCAGGTCCTGGGCCGCAGGATCAGTGCCCGCGGCGAGGATGGGGACAAGTA 28 0.383718098538609 0.987887877897752 0.44412589298614097 Y Y 3.7576122464142 3.80400638525155 3.7576122464142 1 0.0 0.0 Y 0.0 N Y 68601 953 ENSG00000181163 ENSG00000156427 + - 5 5 170838141 170884627 coding coding NPM1 FGF18 170814120 170846660 + + 0.0 170834778 170863097 + - N - - N SA468 22 0.0 13.923076923076902 2 39 2 Y Y 0.0 0.0 39 1.02596900960246 1.1969638445362 1.1969638445362 1.02596900960246 4 - - 0.90878746540423 HCT116-unstranded 1.0 187437 CCGCCGCCGCCGCCGCCGCCGCCGTTGCGCAGATCCGGGCCGCGGCTGTGGGGAGGGCGACGGAGCGGGTGACCTTCCGGAGGCGGGAGCGAGCGAGGAGGCCCGGGAGCGCCGAGCGTCGCCGCCGCCGCCGCCATGAACAACTCGGGCGCCGACGAGATCGG|TGGGACCTGAACCGCCAAACCGCACCTACGAGCAAACGGTAGGCGCTCCATAAATACTTGTTGATGTGGGTGCCATCGTGTAGATGACGGAGCACGAACCCGAGGCTCAGACAGGGGCGGCGACTTGTCCAAAGTCCCACTCCGTGGAGGAAGCGGCTCTGCAGACCTCAGGCGGCGGCTGCTCTAAT 10 1.0 0.6509980495519481 0.246083823672708 Y Y 3.35566963758278 3.3368080613236804 3.3368080613236804 0 0.99391971256823 0.0 Y 0.0 N N 6734 41735 ENSG00000071626 ENSG00000115268 + - 19 19 1435719 1441066 coding upstream DAZAP1 RPS15 1407584 1438358 + + 0.0 1407801 1438072 + - N - - N SA468 1 0.502645502645503 1.0 1 0 1 N Y 0.15 0.502645502645503 12 1.05227590728457 1.2430009154799 1.2430009154799 1.05227590728457 4 - - 0.969962851566742 HCT116-unstranded 1.0 1754 GAAGCTGCTGCTGGACCCTAGCAGCCCCCCTACCAAAGCTCTCAATGGAGCCGAGCCCAACTACCACAGCCTGCCTTCCGCTCGCACTGATGAGCAGGCCCTGCTCTCTTCCATCCTTGCCAAGACAGCCAGCAACATCATTGATGTGTCTGCTGCAGACTCACAGGGCATGGAGCAGCATGAGTACATGGACCGTGCCAGGCAGTA|CAGGTGGAAACTAATTCTAAGCCAGACTGCTGGAGATCACCCTGTTCTAGTGTGTGGAGGCTTCCACCAGGAGGCGCATTGGAGTGACTGTCTGGCATCACCAAGATGACACTCCACGCCACCCGGGGGGCTGCACTCCTCTCTTGGGTGAACAGTCTACACGTGGCTGACCCTGTGGAGGCTGTGCTGCAGCTCCAGGACT 5 0.22321813043557606 0.677103825521874 0.218701910821156 Y Y 3.4456943736864902 3.71976530271662 3.4456943736864902 0 0.995061579328665 0.0 Y 0.0 N Y 2929 11979 ENSG00000149357 ENSG00000137497 + - 11 11 71814433 71791739 coding utr5p LAMTOR1 NUMA1 71796941 71713910 - - 0.0 71809827 71780957 - + N - - N SA468 1 0.0 1.0 1 0 1 N Y 0.0 0.0 6 1.32192160852625 1.03912245844352 1.32192160852625 1.03912245844352 4 - - 0.921767621467871 HCT116-unstranded 1.0 28847 GTCATTTGGAGGAACATGTGGATGTACTTATGACCTCAAATATTGTCCAGTGTTTAGCAGCTATGTTGGATACTGTCGTATTTAAATAAAGCAACGAAAAACGCTATTAATGATGCCTTCAGTGTATATTCCTCTGTTGTTCCTAATGCTCAAAATCAAGGGACCTCTGAAGGTGTACTTGGCTAAAT|ATCAGCGCTTCTGACGAGCCCATTTGCACGGGGACTCGGCCCTCTCTTTTCCTGGCGAGGCTTTTGAACCTGTCGCCAAGCCAGTACCTCAGAGAGAAGGAAATGCAGAGGGACGAGAAGGATGCATGGCGCCTGCCCCCAGTTAGATGTTCTTCAGATAATCTGCAACCAAG 11 1.0 0.431071679414336 0.444283061113463 Y Y 3.5587317031712 3.43937216388778 3.43937216388778 0 0.0 0.0 Y 0.0 N N 9377 243 ENSG00000115233 ENSG00000136535 + - 2 2 162268228 162282381 utr3p upstream PSMD14 TBR1 162164549 162272605 + + 0.0 162268010 162271746 + - N - - N SA468 1 0.0 1.0 1 0 1 N Y 0.0 0.0 7 1.1509267735925 1.11146642706933 1.1509267735925 1.11146642706933 4 - - 0.973905032667803 HCT116-unstranded 1.0 186448 CGGCTTCTCCACCAGCCCCGAGTCCCCGTACACGCACTGGAAGCAGACGGTGTTCTACATGGAGGACTACCTGACCGTGAAGACGGGCGAGGAGATCTTCGGCACCATCGGCATGCGGCCCAACGCCAAGAACAAC|ACTTTTGGCCTCAGTGTTCCCCGCCTGGGAAGTGGGGACTGGCCCTGGTACCTGGCTCCAGAGCTGCACCCAGAGGCGATCAGCCCGGTGCGGGAACGGGGCGGGGTGGCCGCAACTACGGGCCACGGATCCTGACCCGCCCTGCCCACGATGACTATCCACATCCTCATCCTGCTGTTGCTCCTCGCCTTCTCCGCC 4 0.77467086328584 0.657980668063837 0.6270129136939201 Y Y 3.49272035470961 3.42254622194492 3.42254622194492 0 0.0 0.0 Y 0.0 N N 24606 112 ENSG00000126457 ENSG00000224420 + - 19 19 50192286 50193750 coding upstream PRMT1 C19orf76 50179043 50193095 + + 0.0 50189983 50192945 + - N - - N SA468 2 0.0 1.6 1 3 1 Y Y 0.0 0.0 5 0.7957836548839592 0.565598300165458 0.7957836548839592 0.565598300165458 4 - - 0.930964617963465 HCT116-unstranded 1.0 41286 AACCCAAGAAAGTTGTTGGGATAGAAGAACACACAGTCGGCTATGGAGAGCTACTCTTGCTATTATCGCTGACCCTGGATGGACTGACTGGTGTTTCCCAGGACCACATGCGGGCTCATTACCAAACAGGCTCCAACCACATGATGCTGAACATCAACCTTTGGTCGACATTGCTGCTGGGAATGG|GCGGGTACCTCTGGAACACAGGACTCTGCCCCTACTAAAGATCTTCCTTCCTGTATATTCATCTCTAATGTCCATGAAGGGCTCCACCAAAGGAGACGCTGGGCCCGGGGACCAACTGCCCAACTGAAAAGTTGATCATTGACCACTCAACGGAAGAGCTGTCCAGTGAGGAGAGAAAGACTTCAGCTTCTTACAGCACTTACAACCAAAATGGGAGTCTGTACTCATTTTCTATTCAGT 16 0.9883396480042193 0.8060467505130421 0.6732885645223969 Y Y 3.5261738995024503 3.45872825368684 3.45872825368684 0 0.0 0.0 Y 0.0 N N 3965 1980 ENSG00000121073 ENSG00000121067 + - 17 17 47786376 47755596 coding upstream SLC35B1 SPOP 47778305 47676246 - - 0.0 47781462 47760098 - + N - - N SA468 1 0.0 1.0 1 0 2 N Y 0.0 0.0 21 1.2430009154799 1.44030264809576 1.44030264809576 1.2430009154799 4 - - 0.989093450744558 HCT116-unstranded 1.0 63570 GGTCTGATGCAGCGGCCGGTAGCCCGCATAGATGTACGGCTTCCAGAAGAGCGGCGGCACCTCAGCTCGATCCACCGTGAAGACAGGCTCTGGCTGCAGAGATAGCTGAGGCTCCTGGATGACCTGCCGCAGACTCGGCAGGAGGTGGCTGAGTTTCTGGGCCATGGCCATGGCTGTGGGCCTGGGCAGGGAGCT|TCTCTCGCAAACGTTCCAGTTTGGCAGCCATTTGTGCCTCTCGGTTCTCTTTATTAGCTTCCATTTTGTGGGTCAGTTTCTCTTCTGCCATTTTACTGAAGTTGTTGTTCTCTTCTATTGCCTTCTGAAGCACTTCTTTCTCGTGCTCTCGTT 11 0.32887907420141904 0.954900745350731 0.100314795663156 N Y 2.99871737545823 3.45872825368684 2.99871737545823 0 0.9934827799314572 0.0 Y 0.0 N Y 972 18341 ENSG00000182749 ENSG00000117632 - + 1 1 26197744 26233482 intron coding PAQR7 STMN1 26187701 26210672 - - 0.0 26190352 26227982 + - N 22.3608725102201 1.02317075798491 N SA468 1 0.0 1.0 1 0 1 Y N 0.0 0.0 16 1.2430009154799 0.9996621119203448 1.2430009154799 0.9996621119203448 4 0.75 365.5625 0.9383058567324628 HCT116-unstranded 1.0 63178 ATTGTACCCGCACCTCCATGAAGGCCGCTGTCCCATTGAAGCCTGAGGCCTCTATGTCCTTAGACCTCAGCAGGTTGGGAGCCCACACGATGGCCAGGTTGCGAGCATGCATGTTGGTCTGGGCACTGAATGAGGCCATGTGTACCAAGTGCCTCATGAGGAACTCCAGGGTCCTGTAGTTTGGGACAGGGAGTTCCCGAAGCACCTCTAGGATCTTGACCAAGCGCTCAGGTTCCAATTGCACTCCTACAGCCTC|CAAGAACATCCACAGTGACCTGAGAATCCCTTGAGGAGAACTCATTGCTGACATGGCAGACGTAGATGCCGCTGTGCTCAGTGGTCAGTGGGGGAAAGCCCAAAGTGTCCCCATCCACTCGTACCCCACTGGGCAGAGG 7 0.377298441418419 0.729040824237525 0.661135958190161 Y Y 3.76951977068882 3.418448637985509 3.418448637985509 0 0.0 0.0 Y 0.0 N Y 676 496 ENSG00000186517 ENSG00000143217 - + 1 1 161039760 161059389 coding coding ARHGAP30 PVRL4 161016736 161040785 - - 0.0 161024495 161044401 + - N - 0.50918935883414 N SA468 1 0.0 1.0 1 0 1 N Y 0.0 0.0 5 1.19038712011567 0.7760534816223729 1.19038712011567 0.7760534816223729 4 - 9 0.983167200962596 HCT116-unstranded 1.0 61486 TCAGCCTCGGTGGTGGTGGTGGGTGTGATCGCCGCACTCTTGTTCTGCCTTCTGGTGGTGGTGGTGGTGCTCATGTCCCGATACCATCGGCGCAAGGCCCAGCAGATGACCCAGAAATATGAGGAGGAGCTGACCCTGACCAGGGAGAACTCCATCCGGAGGCTGCATTCCCATCACACGGACCCCAGGAGCCAG|GAGGCTGTAGGAGTGCAATTGGAACCTGAGCGCTTGGTCAAGATCCTAGAGGTGCTTCGGGAACTCCCTGTCCCAAACTACAGGACCCTGGAGTTCCTCATGAGGCACTTGGTACACATGGCCTCATTCAGTGCCCAGA 6 0.9843445847240628 1.0 0.886111011204853 Y Y 3.38912318237562 3.76951977068882 3.38912318237562 0 0.0 0.0 Y 0.0029850746268657 N Y 496 676 ENSG00000143217 ENSG00000186517 + - 1 1 161059389 161039760 coding coding PVRL4 ARHGAP30 161040785 161016736 - - 0.0 161043510 161024495 - + N - - N SA468 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 6 0.868127623509773 0.848397450248187 0.868127623509773 0.848397450248187 4 - - 0.975824023851253 HCT116-unstranded 1.0 119169 GCTGCTGCTAAAGTTCCAGCAAAAAAGATCACCGCCGCGAGTAAAAAGGCTCCAGCCCAGAAGGTTCCTGCCCAGAAAGCCACAGGCCAGAAAGCAGCGCCTGCTCCAAAAGCTCAGAAGGGTCAAAAAGCTCCAGCCCAGAAAGCACCTGCTCCAAAGGCATCTGGCAAGAAAGCATAAGTGGCAATCATAAAAA|GTGGTAAAACCAAGACTGAGAATGAGGAAAAAACTGCACAGCTAAACATTTCTAAAGAATCAGAGTCCCACAGACTGATAGTGGAGGGACTGCTGATGGACGTTCCCCAGCACCCTGACTTCAAGGACAGGTTAGAGAAGTCACAGCTACATGATACAGGGAATAAAACAAAGATAGGGG 94 0.34776916796538504 0.9504194852643628 0.43736747788001 Y Y 3.18611454994968 3.2693225627147204 3.18611454994968 0 0.0 0.0 Y 0.0 N N 30733 2816 ENSG00000188846 ENSG00000177873 + - 3 3 40503861 40531727 utr3p coding RPL14 ZNF619 40498783 40518604 + + 0.0 40503739 40528297 + - N - - N SA468 4 0.0443349753694581 2.6666666666666696 1 84 3 Y Y 0.0443349753694581 0.0 87 1.3350750573673 1.21011729337726 1.3350750573673 1.21011729337726 4 - - 0.902378607352904 HCT116-unstranded 1.0 187509 CCACTTCGTCCAAACCGTGGCCGTGGGGGATACAGAGGCAGAGGAGGTCTTGGTTTCCGTGGTGGCAGAGGGCGTGGTGGTGGCAGAGGTGGTACCTTCACTGCCCCTCGAGGATTTCGCGGTGGATTCAGAGGAGGTCGTGGGGGCCGGGAGTTTGCGGATTTTGAATATAGG|GAAAGGACTTAGAAGCCTTACAAATACATCTGTGCATTCTTGCTTCAGACTTTACAACTGAGGGCCAGCCCAGTCTGGAAGCATCTCTTATTAATGTTACAAGGAAACCGCTACCTCAGCAAACAAAAGGAATGGAGGAGGAGACTTACAACAAACGCCATT 8 1.0 0.6836315140960839 0.74289249443113 Y Y 3.2540945620986004 3.6800200533486 3.2540945620986004 4 0.0 0.0 Y 0.0 N Y 5232 849 ENSG00000257103 ENSG00000166398 + - 19 19 34720420 34846491 coding utr5p LSM14A KIAA0355 34663409 34745457 + + 0.0 34712643 34790584 + - N - - N SA468 2 0.0 1.14285714285714 1 1 1 N Y 0.0 0.0 7 0.7694767572018442 0.940471592135588 0.940471592135588 0.7694767572018442 4 - - 0.967572573167675 HCT116-unstranded 1.0 41499 GGAAAACTTCTGGCCATGAGAGAACTTGTTAAAAAGGGTTTCAATCCACCTGTTCTTGTTTTTGTTCAGTCCATTGAAAGGGCTAAAGAACTTTTTCATGAGCTCATATATGAAGGTATTAATGTGGATGTTATTCATGCAGAGAGAACACAACAACA|GCTTCATGTTTCCTGTTGCAGGTGGGATAAGACCCCCTCAAGCAGGCCTGATGCCGATGCAGCAACAAGGATTTCCTATGGTCTCTGTCATGCAGCCTAATATGCAAGGCATTATGGGAATGAATTACAGCTCTCAGATGTCCCAAGGACCTATTGCTATGCAGGCAGGAATACCAATGGGACCAATGCCAGCAGCGGGAATGCCTTACCTAGGACAAG 9 0.7992039152569321 0.971289983650488 0.434475012612602 Y Y 3.5156701673583 3.55025006787687 3.5156701673583 0 0.993687629763579 0.0 Y 0.0 N Y 1092 1200 ENSG00000141141 ENSG00000006114 + - 17 17 36003493 35969544 coding coding DDX52 SYNRG 35969787 35874900 - - 0.0 35981443 35960450 - + N - - N SA468 1 0.0 1.0 1 0 1 N Y 0.0 0.0 10 1.0588526317051 1.1706569468540902 1.1706569468540902 1.0588526317051 4 - - 0.9858818833940122 HCT116-unstranded 1.0 111049 ATCATGTCTTGGGCCGCTCGCCCGCCCTTCCTCCCTCAGCGGCATGCCGCAGGGCAGTGTGGGCCGGTGGGGGTGCGAAAAGAAATGCATTGTGGGGTCGCGTCCCGGTGGCGGCGGCGACGGCCCTGGCTGGATCCCGCAGCGGCGGCGGCGGCGGCGGTGGCAGGCGGAGAACAACAAACCCCGGAGCCGGAGCCAGGGGAGGCTGGACGGGACGGGATGGGCGACAGCGGGCGGG|GTGCACCCCCTGTGGATGTGCTCCGGGCCCTGAGGTTCCCCTCCCTCCCTGATGGTGTCCGGAGAGCGAAAGGCATCTGTCCAGCTGATGTGGCCTACCGAGTGGCACGACCTGCCCAGCTCAGTGCACCCACTCGCCAGC 2 0.5775643307642261 0.477595257397106 0.759702666699242 Y Y 2.71576358354965 3.2389640373349304 2.71576358354965 1 0.0 0.0 Y 0.0 N Y 510 588 ENSG00000204231 ENSG00000204248 + - 6 6 33168630 33160276 coding coding RXRB COL11A2 33161365 33130458 - - 0.0 33168019 33157246 - + N - - N SA468 1 0.166666666666667 1.0 1 0 1 Y Y 0.166666666666667 0.0 7 1.13777332475144 0.914164694453473 1.13777332475144 0.914164694453473 4 - - 0.947429788639524 HCT116-unstranded 1.0 118699 CGACACCAAAAAGAAGATGTACAGCTCCATCCTAGTGGTGGGAGGTGGTTTGATGTTTCATAAAGCTCAAGAATTTCTGCAGCACAGAATTCTCAACAAAATGCCACCATCCTTCAGGCGAATTATTGAAAATGTGGATGTGATCACAAGGCCTA|AGACAATCACAAAGAGTGTGTAGGCCAGCCCCGGTCACAGAGTGCACCGTATCCTGTCACTTCTGGATGTGAGGGAGAAGTGAGTCATCTCATTCCCCTCCGTGGATCAGAGGACTTGGACTAGATAGAAGCATGTGGTGTCTCCTACGAGGCCTGGGCCGGCCTGGAGCCCTGGCACGGGGAGCCCTGGGGCAGCAGCAATCCCTGGGTGCCCGGGCCCTG 3 0.296098218364807 0.628851817892527 0.0662552985553513 N Y 3.714643996557141 3.46232197653647 3.46232197653647 1 0.0 0.0 Y 0.0 N Y 799 593 ENSG00000113812 ENSG00000016391 + - 3 3 53916229 53880417 coding utr5p ACTR8 CHDH 53901093 53850387 - - 0.0 53904009 53875026 - + N - - N SA468 1 0.0 1.0 1 0 1 Y N 0.0 0.0 6 0.953625040976645 1.11804315148986 1.11804315148986 0.953625040976645 4 - - 0.960419672843725 HCT116-unstranded 1.0 164439 GATGGAGCATTGGAAAGGCCATAGACTTTGCCGCTTCTCTAGCCAGGCTTAAAAATGACAATAACAAATTTACAGCTAAGAAATTAAGGCTGTGTCACATTACTTCAGGAGAAGCCTTACCCTTGGATCATACTTTGGAAACCTGGATTGCTAAGGAGGATTGTCCTTTATATAATG|AAGAAGCAAGGATGTCATCGCTCAGTTTTCTGAATATAGAGAAGACTGAAATACTATTTTTCACAAAGACTGAAGAAACCATCCTTGTAAGTTCAAGCTACGAAAATAAACGGCCTAATTCCAGCCACCTCTTTGTGAAAATAGAA 3 0.235589156927048 0.532094955970428 0.568526456754701 N Y 3.5110433747387795 3.60207067538885 3.5110433747387795 3 0.9931718247928292 0.0 Y 0.0 N N 2535 275 ENSG00000104231 ENSG00000253598 + - 8 8 82645138 82608409 coding coding ZFAND1 SLC10A5 82613569 82605842 - - 0.0 82615004 82607158 - + N - - N SA468 1 0.0 1.0 1 0 3 Y N 0.0 0.0 7 1.21011729337726 0.8286672769866021 1.21011729337726 0.8286672769866021 4 - - 0.987578100387065 HCT116-unstranded 1.0 101338 TCACCACCTTTGGCTCCAAAGGGATACTCCTATCACACACATCAGTTTTCATCCCAAGAGACCGATGCACATCCTTCTCCATGATGCCTACATGTTCTGCATCATTGACAAGTCATT|GTCAAGTTCATCCGAGAAGTAACACCATATATCAAGAAGCCATCATTAGTATCAGATCTGCCGTGGGAAGGTGCAGCCCCCCAGTCACCAAGCTTTAGTGGCAGTGAGGACTCT 20 3.39150935889326e-05 0.542575891173611 0.7560910785552719 Y Y 3.55760534744548 3.51377186168787 3.51377186168787 4 0.9912658802177858 0.0 Y 0.0 N Y 6182 4125 ENSG00000141076 ENSG00000168807 + - 16 16 69202941 69342955 coding coding CIRH1A SNTB2 69165194 69221032 + + 0.0 69199429 69279505 + - N - - N SA468 1 0.0 1.0 1 0 3 Y Y 0.0 0.0 5 0.7497465839402591 0.552444851324401 0.7497465839402591 0.552444851324401 4 - - 0.919008623856773 HCT116-unstranded 1.0 104064 CCCAATACCAACAACCTTGTCATCGCTCATTCGGACCAGCAGGTATTTGAGTACAGCATCCCAGACAAACAGTATACAGATTGGAGCCGGACTGTCCAGAAGCAGGGCTTTCACCACCTTTGGCTCCAAAGGGATACTCCTATCACACACATCAGTTTTCATCCCAAGAGACCGATGCACATCCTTCTCCATGATGCCTACATGTTCTGCATCATTGACAAGTCATTG|GCCTATAATGAGGAAATTTCTGTCTGACCAATATCAGGGGCACATCAGCTGCTGTACTAAGTTTCTTCAAATATCCTGGAATTGTGGTGAGTTTGAACCCGTTAGCTACCACTTC 7 1.0 0.3611133013008821 0.6312379776806121 Y Y 3.540809910726149 3.57386222793487 3.540809910726149 0 0.991329625884732 0.0 Y 0.0202477249747219 N N 6182 4125 ENSG00000141076 ENSG00000168807 + - 16 16 69202941 69342955 coding coding CIRH1A SNTB2 69165194 69221032 + + 0.0 69199429 69269651 + - N - 0.502455189941429 N SA468 1 0.0 1.0 1 0 3 N Y 0.0 0.0 9 0.953625040976645 0.506407780380701 0.953625040976645 0.506407780380701 4 - 16.1111111111111 0.9745401230570492 HCT116-unstranded 1.0 101196 ACAGCATCCCAGACAAACAGTATACAGATTGGAGCCGGACTGTCCAGAAGCAGGGCTTTCACCACCTTTGGCTCCAAAGGGATACTCCTATCACACACATCAGTTTTCATCCCAAGAGACCGATGCACATCCTTCTCCATGATGCCTACATGTTCTGCATCATTGACAAGTCATT|GTCAAGTTCATCCGAGAAGTAACACCATATATCAAGAAGCCATCATTAGTATCAGATCTGCCGTGGGAAGGTGCAGCCCCCCAGTCACCAAGCTTTAGTGGCAGTGAGGACTCTGGTTCGCCAAAACACCAGAACAGCACCAAGGACAGGAAGATCATCCCTCTCAAAATGTGCTTTGCTGCTAGAAACCTAAG 20 0.7781061276074809 0.542575891173611 0.7560910785552719 Y Y 3.55760534744548 3.51377186168787 3.51377186168787 1 0.994301158301158 0.0 Y 0.0 N Y 6182 4125 ENSG00000141076 ENSG00000168807 + - 16 16 69202941 69342955 coding intron CIRH1A SNTB2 69165194 69221032 + + 0.0 69199429 69279505 + - N - 0.439651575590358 N SA468 1 0.0 1.0 1 0 3 Y Y 0.0 0.0 23 1.17723367127462 1.30876815968519 1.30876815968519 1.17723367127462 4 - 6.30434782608696 0.971806790740224 HCT116-unstranded 1.0 138007 AATGTTATGCAAAAATAATCTGTAATACTAAAGACAATGAACGTGTTGTGGGCTTTCACGTACTGGGTCCAAATGCTGGAGAAGTTACACAAGGCTTTGCAGCTGCGCTCAAATGTGGACTGACCAAAAAGCAGCTGGACAGCACAATTGGAATCCACCCTGTCTGTGCAGAG|CAGCCAGAAGTGACTAAGGCGACAGTCTTCAGGACACAGAGAAGCTGCTCCTTGTGATGAAAGCCACTCTTCAATGAGCTTTGTGCAGGCTGGTGATCCACGTGGTCCTACCCCCCCTCCACCTGCCCCACCGTGT 1 0.906015631176758 0.3827646094216829 0.44212946479156 Y Y 3.63721963736088 3.57332786160156 3.57332786160156 0 0.0 0.0 Y 0.0 N N 22834 2671 ENSG00000198431 ENSG00000171310 + - 12 12 104744061 105155792 coding upstream TXNRD1 CHST11 104609557 104849073 + + 0.0 104733051 104824217 + - N - - N SA468 1 0.8738738738738739 1.0 1 0 1 N Y 0.0 0.8738738738738739 7 0.993085387499816 0.730016410678673 0.993085387499816 0.730016410678673 4 - - 0.9810876500469752 HCT116-unstranded 1.0 104003 GCGGGGACAGGAGCCCAGAGAGTCTGCTGCCTCCGATGCTGCTTCAGCCCCCTCAAGAAAGTGTGGAACCTGCAGGGCCTCTAGATGTGCTGGGCCCCAGTCTCCAAGGGCGAGAATGGACCCTGATGGACTTGGACATGGAGCTGTCCT|TGCCCCGACAATGGGCAACGCGCAGGAGCGGCCGTCAGAGACTATCGACCGCGAGCGGAAACGCCTGGTCGAGACGCTGCAGGCGGACTCGGGACTGCTGTTGGACGCGCTGCTGGCGCGGGGCGTGCTCACCGGGCCAGAGTACGAGGCATTGGATGCACTGCCTGATGCCGAG 3 0.980261514578061 0.243169966588582 0.355726449061969 Y Y 3.49164743214637 3.38912318237562 3.38912318237562 0 0.0 0.0 Y 0.0 N Y 105 1443 ENSG00000102878 ENSG00000140939 + - 16 16 67203848 67209643 coding utr5p HSF4 NOL3 67197288 67204057 + + 0.0 67203004 67208065 + - N - - N SA468 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 5 0.8286672769866021 0.953625040976645 0.953625040976645 0.8286672769866021 4 - - 0.968801266236385 HCT116-unstranded 1.0 63379 AACTTCTTAAAAATAAAAGGATGGGAGAAGAAAGGAATTCTGCTATTTCTCCTCAAAAGATCCATAATCAGACAGCAAGAAAGAGATTCGTTCAGAAATGCGTTCTTCCATTAAATGAGGATAGTCCGTTGATGTATCAGCCACAAAAAATGGACTTGACTATGCACTCAG|GTCGGCTGCCTCCAATCCTGAGGTCATCACTCATCAAGAGGGGATAATCCCAGGGACAGCAGGATCTGCTTCGTTACTTGGATTTAGGAGCCAGAAACCCATCAGGCAACTAAACAGTAACAATGACCCGCCATTAAACACACT 3 1.0 0.7682065877585641 0.133561653140914 N Y 3.60103760561896 3.60525382308455 3.60103760561896 0 0.0 0.0 Y 0.0 N N 2327 56 ENSG00000122482 ENSG00000233593 + - 1 1 91487829 91317207 coding downstream ZNF644 RP4-665J23.1 91380859 91295104 - - 0.0 91403042 91248980 - + N - - N SA468 1 0.0 1.0 1 0 1 N N 0.0 0.0 5 0.88128107235083 0.8418207258276591 0.88128107235083 0.8418207258276591 4 - - 0.98357400749032 HCT116-unstranded 1.0 64470 GTTATTAAAAACAAACATGAGGGGAAAATATCAGTTATGAGCAAAGTTGTTACTGATTTCTTGTATCTCCCAGGATTCCTGTTGCTTTACCCACAACAGACAAGTGACTGAAAACTCCTGAGGCATTTCCTGGACTAGAATGGGTAGTGAAGACCCATGTCAG|GAGGACGAAGAGGTCCCAACAGGACATCTTACTGTCGAAATCCGCTCTGTGAGCCGGGATCCTCGGGGGGCTCTAGTGGAAGCCACACTTCCAGTGCATCGGTGACCAGTGTTCGTTCCCGCACCAGGAGCAGTTC 1 0.43304480366035497 0.524176611694105 0.6329462971254761 Y Y 3.53871326596283 3.56488607910057 3.53871326596283 0 0.9926715686274508 0.0 Y 0.0 N Y 12091 768 ENSG00000121774 ENSG00000121775 + - 1 1 32526451 32568467 intron coding KHDRBS1 TMEM39B 32479430 32537632 + + 0.0 32510991 32540552 + - N - - N SA468 1 0.0 1.0 1 0 1 N Y 0.0 0.0 5 0.716862961837616 0.7957836548839592 0.7957836548839592 0.716862961837616 4 - - 0.978321369026098 HCT116-unstranded 1.0 41459 CCATCAGGAATGCCTTCATTCTGGGCTGGAATGACGTAGTCGGCGACATCCCAGATCCGCTGCCCAAGATCCGAGGTGTTGGTGAAGGCCACGCCCTTGACTTTGGTGATGACAGCACTCTGCAGGGAGGTGTCGACGTCTTGGTAACCCTTCTTTATCAGGAACACCCAT|CTTTGCCCAGGTGGATCTCTCCTCTGTTCTTCATGGCTTCGAGGGTCAGCTTACAGGTGTCTCTCTCCTTCATGAAGGCCTCCTCAATTGCTGTCCTCCTCCAAATGTCCACACGATAGGATCTGTACCATTTAGAGAATTCATTGCT 6 0.964154423170853 0.932046475303234 0.944988389298847 Y Y 3.62192127872787 3.21800065863931 3.21800065863931 0 0.0 0.0 Y 0.0502744932432432 N N 591 997 ENSG00000083454 ENSG00000083457 - + 17 17 3599698 3704537 coding downstream P2RX5 ITGAE 3575493 3617922 - - 0.0 3595088 3608720 + - N - - N SA468 1 0.0 1.0 1 0 2 N Y 0.0 0.0 10 0.756323308360787 0.9996621119203448 0.9996621119203448 0.756323308360787 4 - - 0.9812455057844268 HCT116-unstranded 1.0 64519 GCGAGCAGTACGACAGCAACGGCCGAAAAAAGTTGGTGTGCGCTACTATGAAACACACAACGTGAAAAATAGGAACAGGAACAAAAAGAAGACCAATGACTCAGAGGGACAGAAACACAAACGCAAAAAATTCAGACAAAAGCAGTAATGTTTAAAAG|CCAAAATCACAGAATGAAGGCGGTGAAGAGCGAACGGGAGCGAGGGAGCCGGCGAAGACACCGGGACGGGGACGTGGTGCTGCCGGCGGGGGTGGTGGTGAAGCAGGAGCGTCTCAGCCCAGAAGTCGCACCTCCCGCCCACCGCCGTCCGGACCACTCCGGTGGTAGCCCGTCTCC 5 0.994837280466048 0.477477173911982 0.923979973769576 N Y 3.02279354383265 3.35041100277749 3.02279354383265 0 0.0 0.0 Y 0.0 N N 4560 2247 ENSG00000134697 ENSG00000163877 + - 1 1 38061536 38019903 utr3p utr5p GNL2 SNIP1 38032417 38002142 - - 0.0 38032446 38019843 - + N - - N SA468 1 0.0 1.0 1 0 1 N N 0.0 0.0 10 0.8089371037250159 1.01939228518193 1.01939228518193 0.8089371037250159 4 - - 0.9482619720274972 HCT116-unstranded 1.0 110904 AAGTAGGAGAGGTAGAAGGCGGACAGGCCCTGCTCGGGCGTGGCGGGTGGACTGGGACTCCAGTCCCGTCTCTCGAGACCCACTGCCCCCGCTGCCGCCTTCTCCAAGCCTGTCCGCGACACCGTGTCGGGGGGCAGCAGGAGGTGGCTGGGGGATACGCTGCTCAGACCCGGGCTGGCGCTGCCCATGCCGCTGCTGTTTGGGCTGGCGGCTGTGT|CTTACTGTAAGTCACTACTGATAAGTTGTTTGCGTGACTGCTGGGAGACAGATTTACAGAGTTCTGTGACAGTCTATTCTGGTCTTGCTCAGTTTGGTCAGGAGCAGGAGCCCATGTGTCAGGAGCAGGAGCCCATGTGTTTTTGCTGATCGAGTCGAACTCGGAGCCCCCAGGGTCTTTTAAGTTGTTTTCATCTGATTGTCGGTTCTTTTGGGGAGAG 13 0.929852141671691 0.568936665454557 0.5741216598978879 N Y 2.8172013303880203 3.47080361183081 2.8172013303880203 0 0.995402226290428 0.0 Y 0.0 N Y 138 2111 ENSG00000124664 ENSG00000196821 - + 6 6 34524110 34664636 utr5p coding SPDEF C6orf106 34505579 34555065 - - 0.0 34512261 34574332 + - N - 0.612377582871533 N SA468 2 0.0 1.2 1 3 1 Y N 0.0 0.0 15 1.3416517817878302 1.3350750573673 1.3416517817878302 1.3350750573673 4 - 5.6 0.919526972256764 HCT116-unstranded 1.0 41074 AGAATGAGCTGAAGCCTGGCTCAGTGCTGCTGCTGAAGCAGATTGGAGTGTTTTCTCCTTCACTTCGAAATCACTACCTCAACGTGACACCCAACAACCTGGTCCATATTTACAGCCCGGATTCTGGGGATGGGAGCTTCCTCAAGCCATCTCAGCCCTTCCCCA|AGCAGGAGTGGCTGGAATGGGAGGACCGGCGGCGGGCGGCTGCCCAGCAGTGCCGGAGCCGCAGGTGCCCGTCAAGTCCCCGGGCCCGACTCACTAGGCCTCACCGTTCCTGCCGAGACCCAGCTGTCCACCAAGCCCTCTTCTCCGGCAACCTGCAGCAGGTCCAAGCCCT 2 0.85713354826578 0.228508329294356 0.374251777040411 Y Y 3.21808036422602 3.1478434507290296 3.1478434507290296 0 0.0 0.0 Y 0.0 N Y 500 235 ENSG00000125319 ENSG00000161664 + - 17 17 42239844 42256451 coding coding C17orf53 ASB16 42219274 42247815 + + 0.0 42232779 42248215 + - N - 0.0712253873466753 N SA468 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 5 0.6445189932118011 0.578751749006515 0.6445189932118011 0.578751749006515 4 - 0.2 0.925109294794084 HCT116-unstranded 1.0 41483 AGTCTCCACAATCATGTTGGCGGCCTCTTCATCTTGGAACAGGGCTTGGACCTGCTGCAGGTTGCCGGAGAAGAGGGCTTGGTGGACAGCTGGGTCTCGGCAGGAACGGTGAGGCCTAGTGAGTCGGGCCCGGGGACTTGACGGGCACCTGCGGCTCCGGCACTGCTGGGCAGCCGCCCGCCGCCGGTCCTCCCATTCCAGCCACTCCTGC|TGGTGAGGCAGGATCCCAGCTGGGCCAGGGAAACGGCGAGTTTTGGCTCGGGTGGAGGGATGGGTGGGCTGCTGGGGTGTCCGGCTGGCAGCAGTGACTAGCTGCACCAGGTGGTTGGTGACTATGGGTGTCTGCAGAGCTCCCTGGGGACCTTTTGGGGTACCAACAGGAGACCC 7 0.8901812441008121 0.304601435215058 0.829394376534013 Y Y 3.17976941221201 3.29127915838687 3.17976941221201 0 0.0 0.0 Y 0.0 N Y 235 500 ENSG00000161664 ENSG00000125319 - + 17 17 42256451 42239844 utr5p coding ASB16 C17orf53 42247815 42219274 + + 0.0 42248215 42226395 - + N - 6.4584119705312 N SA468 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 10 1.19038712011567 0.953625040976645 1.19038712011567 0.953625040976645 4 - 0.4 0.944562259502402 HCT116-unstranded 1.0 1293 CCAAGGGGCGGGCAGAAGTTGGAAACATGCGGCTGTCGGTCGCTGCAGCGATCTCCCATGGCCGCGTATTTCGCCGTATGGGCCTCGGTCCCGAGTCCCGCATCCATCTGTTGCGGAACTTGCTCACAGGGCTGGTGCGGCACGAACGCATCGAGGCACCATGGGCGCGTGTGGACGAAATGAGGGGCTACGCGGAGA|AGGTCAGGGAGCCTGAGCTGGAGCCAGGGCCCCAGTGGGACCTGACCCAAAGTCTGAGGTCAAGCTGGGCCCAGAGCCTGGCCTGGAGCTGGAGCCCAAGGCACAGCTGGACTACCCTTGTCATGCAGAAGGAGCTGGGCATTGTGCCTTCCTGCCCTGGCATGAAGAGCCCCAGGCC 15 0.8800022759304559 0.992023474333203 0.531530537136958 Y Y 3.37039893476232 2.9799532750515803 2.9799532750515803 9 0.0 0.0 Y 0.0250648228176318 N Y 3371 3214 ENSG00000158042 ENSG00000166341 + - 11 11 6704632 6677085 coding utr5p MRPL17 DCHS1 6702013 6642556 - - 0.0 6704354 6662964 - + N - - N SA468 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 12 1.3350750573673 1.11146642706933 1.3350750573673 1.11146642706933 4 - - 0.9094572871094848 HCT116-unstranded 1.0 63745 GGGAAACCACCTTGCGTGGGTTCAAGAAGAGTGGAACTCCAGGAAAAACTGGTGGCCAGGCTTTCATTTCAGCTACTTTTGGGCAAAAAGTGATTGGAAGGAAGATACAGCTTTGGCCTGTGAGAAAGCTTTTGTGGCTGGTTTACTGTTAGGAAAAGG|AGTGCTCGCCCTACGCAGCCCACCTCTACGACGCCGAAAACACCCAGACGCCTCTCCGGAATCTCCCGGGCCTCTGCTCTGATTACTGCTCTGCCTTCCATTCTAACTGTCACTCAGCCATTTCCCTGCTGACCAATGACCGCGGCCTCCAGGAG 4 0.545517166559037 0.28976530305763104 0.6270129136939201 Y Y 3.15678909433978 3.3603897161581404 3.15678909433978 1 0.0 0.0 Y 0.00960573476702509 N Y 706 150 ENSG00000143498 ENSG00000143512 + - 1 1 222763275 222721445 coding coding TAF1A HHIPL2 222731244 222695602 - - 0.0 222734706 222717531 - + N - - N SA468 1 0.0 1.0 1 0 2 N Y 0.0 0.0 6 0.7957836548839592 0.854974174668716 0.854974174668716 0.7957836548839592 4 - - 0.971051733389432 HCT116-unstranded 1.0 64656 TTACAACATGCATTATACCTTCTGCATCATGGAATGCTTAAAGATGCTAAGAGAAATCTGAGTGAGGCAGAGACATGGAGACATGGTGAAAATACGTCTTCCCGGGAAATATTAATCAACCTTATTCAGGCCTATAAAGGGCTTTTACAGTATTATACCTGGTCTGAAAAGAAGATGGAATTGTCAAAGCTTG|GAGTGCTCGCCCTACGCAGCCCACCTCTACGACGCCGAAAACACCCAGACGCCTCTCCGGAATCTCCCGGGCCTCTGCTCTGATTACTGCTCTGCCTTCCATTCTAACTGTCACTCAGCCATTTCCCTGCTGACCAATGACCGCGGC 11 0.5612742533021701 0.35869104645282 0.807505874314391 Y Y 3.59169073442408 3.34103362635907 3.34103362635907 1 0.0 0.0 Y 0.0 N Y 706 150 ENSG00000143498 ENSG00000143512 + - 1 1 222763275 222721445 coding coding TAF1A HHIPL2 222731244 222695602 - - 0.0 222750787 222717531 - + N - - N SA468 1 0.0 1.0 1 0 2 N Y 0.0 0.0 8 1.2824612620030702 0.986508663079288 1.2824612620030702 0.986508663079288 4 - - 0.933943738108979 HCT116-unstranded 1.0 137930 TGGGTATTTGGCTTTATAACAGAGCCTTTGAATGTTGGAAGATGTATCATCACCTGAAAGTGTAGTAAGATCTATAAAGGTAACAGCTTTCAGGAGCCAAGCAGCCTGCCACTCCTTTTTCACGGTTCTGCGAGCCTGGATTTGTTCCGCACGCCTCAGAACTGCCGGGTGATTCACTTGTATTTTGGAGATCCAGCTAAGGT|AGGTAACACCAAGTTAGTTAGTTGTTCCAGCACTGGAGCTAATTCATTTTCCTCATTATTTACTGCTGTTTCTGCCTTAAGCAGACAGTAACTCTGGAAGGCTGATGCTTTTCTCTGCTTGCTTGTTTTAGTCAGTTGTATACTAACTGCACAT 11 0.844812771553095 0.989589194767749 0.473931690219458 Y Y 3.77001428422878 3.6282434885265897 3.6282434885265897 0 0.0 0.0 Y 0.0 N N 903 7396 ENSG00000023697 ENSG00000023734 - + 12 12 16190220 16056412 coding utr3p DERA STRAP 16064106 16035325 + + 0.0 16109870 16056077 - + N - 1.32081586975317 N SA468 3 0.0 1.84615384615385 1 7 1 N Y 0.0 0.0 13 1.27588453758255 0.901011245612416 1.27588453758255 0.901011245612416 4 - 66.7692307692308 0.93869678212309 HCT116-unstranded 1.0 158540 CTTGAAGAAGAAAAAAGGAGACAGAAGATTGAAATGTGGGACAGCATGCAAGAAGGAAAAAGTTACAAAGGAAATGCAAAGAAGCCCCAGGAGGAAGACAGTCCTGGGCCTTCCACTTCATCTGTCCTGAAACGGAAATCGGACAGAAAGCCTTTGCGGGGAGG|AGAACATGGTCCAAGACAATTCCTGGGAAAGTTCAGTTCTTCTCAAGTGAGGGTTCTGACACATCTGTACCAATTCCAGTAGTGCCACTACGGGGTGTGGACGACTCCTACCCGCCCCAGAAGAAGTCCTTCATGATGCTCAAGTACATGCACGACCACTACTTGGACAAGTAT 9 0.986969867414962 0.8170220531797651 0.5827717446834829 Y Y 3.33896748681929 3.5203902459336605 3.33896748681929 0 0.0 0.0 Y 0.0 N Y 2077 3351 ENSG00000131871 ENSG00000131873 + - 15 15 101817705 101792137 coding coding VIMP CHSY1 101811022 101715928 - - 0.0 101814625 101775782 - + N - - N SA468 2 0.0 1.11111111111111 1 1 1 N Y 0.0 0.0 9 0.920741418874002 1.14435004917197 1.14435004917197 0.920741418874002 4 - - 0.9868664917697628 HCT116-unstranded 1.0 64402 AGGGCTGCTTCCGCTGCTGCCGCTGCCAGCGCTCACTAGCCGATGAACCCTTCACCTGCCAGGACAGTGAGCTGCTCTGCAATGACTGCTACTGCAGTGCGTTTTCCTCGCAGTGCTCCGCTTGTGGGGAGACTGTCATGCCTG|TAGAGACGGGGTTTCACCATGTTAGCCAGCCTGGTCGTCTCGAACCTCTGACCTCAAGTGATCCGCCCGCCTCGGCCTCCCAAAGTGTTGGGATTACAGGCGTGAGCTACCGCGCCCGGCCTCACATGTGAATTTTTTTAAAAACACCACCAGCAAAACCCCACTATTCCCATTTTCCTGAGAAAGACGCTGAGGTCCAGAGAAAGAGAAAAC 9 0.8630170132448142 0.8170220531797651 0.358310215318322 N Y 3.54400240599166 3.7061623612628 3.54400240599166 0 0.0 0.0 Y 0.0 N N 552 4803 ENSG00000183386 ENSG00000183431 + - 1 1 38471278 38456593 coding utr5p FHL3 SF3A3 38462442 38422647 - - 0.0 38464646 38456274 - + N - - N SA468 1 0.292682926829268 1.0 1 0 1 N N 0.0 0.292682926829268 10 0.7102862374170871 0.539291402483344 0.7102862374170871 0.539291402483344 4 - - 0.985425399056096 HCT116-unstranded 1.0 29811 GGAACTGGAAGAGGAGGCAACAGTATTTGGGGCAAGAAGTTTGAGGATGAATACAGTGAATATCTTAAGCACAATGTTAGAGGTGTTGTATCTATGGCTAATAATGGCCCGAACACCAATGGATCTCAGTTCTTCATCACCTATGGCAAACAGCCACATTTGGACATGAAATACACCGTATTTGGAAAG|ATGAGACACTCAAAGAGAACTTACTGTCCTGATTGGGATGACAAGGATTGGGATTATGGAAAATGGAGGAGCAGCAGCAGTCATAAAAGAAGGAAGAGATCACATAGCAGTGCCCAGGAGAACAAGCGCTGCAAATACAATCACTCTAAAATG 4 0.974562183477636 0.7581095000563141 0.435662324224735 Y Y 3.39128260787123 3.45976132345673 3.39128260787123 0 0.0 0.0 Y 0.0 N N 966 2322 ENSG00000240344 ENSG00000013441 + - 2 2 201754026 201729422 coding coding PPIL3 CLK1 201735630 201717732 - - 0.0 201736244 201726585 - + N - 2.59884284293857 N SA468 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 7 1.14435004917197 0.7957836548839592 1.14435004917197 0.7957836548839592 4 - 31.5714285714286 0.990884955697312 HCT116-unstranded 1.0 29810 AGTATTTGGGGCAAGAAGTTTGAGGATGAATACAGTGAATATCTTAAGCACAATGTTAGAGGTGTTGTATCTATGGCTAATAATGGCCCGAACACCAATGGATCTCAGTTCTTCATCACCTATGGCAAACAGCCACATTTGGACATGAAATACACCGTATTTGGAAA|AGTTCAAAAACTATCAGTGAGTGGGGACAACACGCCGACGGCTTCCTTTCATCCGCCACAGCGGGCTCTGGTTCCCTCCCTGGCGCCTGCGCCCACGATGGTCGCGCGCGCGACACGCCCGCCCTTTCCGCCTGCTCGCCCCGTGCATGACCCGCCCCGCGGCGGAGA 1 1.0 0.943581925773874 0.933739379359802 Y Y 3.37192651807217 3.61257440753299 3.37192651807217 1 0.0 0.0 Y 0.0 N N 966 2322 ENSG00000240344 ENSG00000013441 + - 2 2 201754026 201729422 coding upstream PPIL3 CLK1 201735630 201717732 - - 0.0 201741642 201729609 - + N - - N SA468 1 0.0 1.0 1 0 2 N Y 0.0 0.0 7 0.8089371037250159 0.887857796771359 0.887857796771359 0.8089371037250159 4 - - 0.9812455057844268 HCT116-unstranded 1.0 50702 GAGAAGAAGCCCAGCTGCTTACTGAGGTCCTTTTCGAACTCGTACTTGCGGATGACCAAGGAGGCTGCCTGCTGGGTCAGGAAGTCGGCGAGCTCCTCATAAAGGCGGTTGGAGAAGTGAGACATGCTGGACTTCGACGAGATGGAGGGCAGCGGCTTCTTCTTCGTGAACCTGCTGCTGCTGCAGGGGCT|CTTGGTCGGTTTTGGTTGCTGGCTTCCAGTTTTCGGCACTAATTACTGGCAGACAGACCTGCCCCTTTTCGTCGATGTTTGGGTGATAGATCTTTGTTTTAAATGTGATCTTCGGTGGTTTGAATGGGTACTCTGCTGGAAAGTTGATTTCGATTCTGAAGGCTCCCTTATCATATGGAGGGTTGTCC 8 1.0 0.98193937616062 0.7350403001833751 N Y 3.3158845354214104 3.2509995426855403 3.2509995426855403 0 0.0 0.0 Y 0.0 N Y 133 18973 ENSG00000161180 ENSG00000185651 - + 22 22 21991616 21978323 coding coding CCDC116 UBE2L3 21987007 21903736 + + 0.0 21990721 21965332 - + N - 0.546374794257691 N SA468 4 0.0 3.0 1 6 1 Y N 0.0 0.0 7 1.13119660033092 1.24957763990043 1.24957763990043 1.13119660033092 4 - 256.285714285714 0.903166291748807 HCT116-unstranded 1.0 137941 AGCTACCAGCTCTCTGCTGGTTACTCACGATGGCCCTCGGTGACATCCCAGGAATGGGTCTTCCAGATGCTATCGCGACAGAACAATTACACCGTCAACAACAAGAGAAATGGAGTGGCCAAAGTCAACATCTTCTTCAAGGAGCTGAACTACAAAACCAATTCTGAGTCTCCCTCTGTCACG|GTGCTCCTGGAGCTGTTGGTGGGAATATACCCCTCAGGGGTTATTGGACTGGTCCCTCACCTAGGGGACAGGGAGAAGAGAGATAGTGTGTGTCCCCAAGGAAAATATATCCACCCTCAAAATAATTCGATTTGCTGTACCAAGTGCCACAAAGGAACCTACTTGTACAATGACTGTCCAGG 3 0.857612872810562 0.472067070904374 0.529488065560368 N Y 3.5110433747387795 3.52680574168821 3.5110433747387795 0 0.9945205068155892 0.0 Y 0.0 N Y 2918 3070 ENSG00000111319 ENSG00000067182 + - 12 12 6486896 6451280 coding coding SCNN1A TNFRSF1A 6456009 6437923 - - 0.0 6457893 6443410 - + N - - N SA468 1 0.0 1.0 1 0 1 Y N 0.0 0.0 5 1.18381039569515 1.0588526317051 1.18381039569515 1.0588526317051 4 - - 0.98314521503032 HCT116-unstranded CGHSA0430 1.0 64885 CACGTTGCTAAGCCAGTCAGTGGCCCTGCCTCCGTGCACTGAACCCAACTTCCAGGGACTGACTCACTGAGAGTGGGCTTTGACAAACAGCTCTCACAGGACCTGGCTGTCAACCTCCTTGTTGCCCCCACTGTTGCCTTGAGAATTGAAGACAT|GCCTTCCTGATGCGCTTGCCTGCTCCCTGGTCTCTCTGCATGGGGAAGGAGTGTTCCCAGCTTGCAAACTCCAGCTTTGCCTGTGAGAGGAACAAGCGTCCCTGATCCAGAAGGTGGTGAGTCCTCCTCTCTCTCTTCATGCTTTTTAGTCCTTTA 5 0.627156217973779 0.8128193179706501 0.218701910821156 Y Y 3.4278353619737403 3.06889150822292 3.06889150822292 0 0.0 0.0 Y 0.0 N Y 247 790 ENSG00000164008 ENSG00000164010 + - 1 1 43264127 43310660 utr5p utr5p C1orf50 ERMAP 43232940 43282795 + + 0.0 43241150 43291294 + - N - - N SA468 1 0.0 1.0 1 0 1 N Y 0.0 0.0 5 0.848397450248187 0.822090552566073 0.848397450248187 0.822090552566073 4 - - 0.9466391840214008 HCT116-unstranded 1.0 30692 ATTACCTTTGTGCTGTTCCCTCGTCACACCAATGCCAGTGCTCGAGACAACACCATCAACCTGATCCACACGTTCCGGGACTACCTGCACTACCACATCAAGTGCTCTAAGGCCTATATTCACACACGTATGCGGGCGAAAACGTCTGACTTCCTCAAGGTGCTGAACCGCGCACGCCCAGATGCCGAGAAAAAAGAAATGAAAACAATCAC|GCATGCCGGCTGCCGCTCCAGGACTCCCCTGTCCCCAGGACCAAGATGACGCCCAACAGCACTGGCGAGGTGCCCAGCCCCATTCCCAAGGGGGCTTTGGGGCTCTCCCTGGCCCTGGCAAGCCTCATCATCACCGCGAACCTGCTCCTAGCCCTGGGCATCGCCTGGGACC 11 0.55094206815929 0.777364267553483 0.187424826020751 N Y 3.0302022565637405 3.3661335169335698 3.0302022565637405 0 0.0 0.0 Y 0.0025974025974026 N Y 7664 283 ENSG00000163466 ENSG00000179921 + - 2 2 219119079 219128582 coding utr5p ARPC2 GPBAR1 219081817 219124219 + + 0.0 219114644 219127403 + - N - - N SA468 1 0.0 1.0 1 0 1 N N 0.0 0.0 10 1.05227590728457 1.11804315148986 1.11804315148986 1.05227590728457 4 - - 0.9383058567324628 HCT116-unstranded 1.0 103275 GGCGGGGCGGCGGCCGTGGGTCCCTGCCGGCCGGCGGCGGGCGCAGACAGCGGCGGGCGCAGGACGTGCACTATGGCTCGGGGCTCGCTGCGCCGGTTGCTGCGGCTCCTCGTGCTGGGGCTCTGGCTGGCGTTGCTGCGCTCCGTGGCCGGGGAGCAAGCGCCAG|ACAGAGGTGTTCCAGGCCTTGCAGCGGCTCCATATGACCATCTTCTCCCAGAGCGTCTCACCATGTGGGAAGTTTCTGGCGGCTGGCAACAATTACGGGCAGATTGCCATCTTCAGGTACCCTCTGCCGCTGTCCACCCATTAGCCCTGGCACTTGGCCCTCATGGGACGGATGCCCCCGTT 5 0.9015827666394848 0.889603332424216 0.561714719478438 Y Y 3.35823029066252 3.76951977068882 3.35823029066252 0 0.0 0.0 Y 0.0 N Y 5850 1795 ENSG00000006327 ENSG00000131652 + - 16 16 3072384 3077756 coding coding TNFRSF12A THOC6 3068446 3074028 + + 0.0 3070492 3075709 + - N 0.477293608098372 0.74114702303947 N SA468 1 0.28758169934640504 1.0 1 0 1 Y Y 0.28758169934640504 0.0 20 1.00623883634087 1.1509267735925 1.1509267735925 1.00623883634087 4 51.65 13.1 0.989007269175208 HCT116-unstranded 1.0 118686 ATGTTATAGACACTGCCAACTCGGCCTGTGTGGGTTCTGCATACCGAGCTTTTCATGGTCTTGCAGGTGGAACAGATGTGCCCTTTTCAGAGGTTGTGAAGTTAGCTCCAAATCCCAGACTAGCTGCTACCCCAAGCCCGGGAGCTTCT|CAGGCTCTGGGCGTGGGGAGGCTGAGACACGGGAGTGCATCTACTACAACGCCAACTGGGAGCTGGAGCGCACCAACCAGAGCGGCCTGGAGCGCTGCGAAGGCGAGCAGGACAAGCGGCTGCACTGCTACGCCTCCTGGCGCAACAGCTCTGGCACCATCGAGCTCGTGAAGAAGGGCTGCTGGCTAGATGACTTCAACTGCTACGATA 2 0.980261514578061 0.49694961517571 0.7791917983120871 Y Y 3.3870265376123 3.26294691975352 3.26294691975352 0 0.0 0.0 Y 0.0 N Y 349 409 ENSG00000093217 ENSG00000114739 + - 3 3 38462839 38524948 coding intron XYLB ACVR2B 38388251 38495342 + + 0.0 38442476 38518778 + - N - 0.0413759759817776 N SA468 1 0.0 1.0 1 0 1 N Y 0.0 0.0 5 0.887857796771359 1.14435004917197 1.14435004917197 0.887857796771359 4 - 4.6 0.9790974640581468 HCT116-unstranded 1.0 119243 TTGGTTGTTCGTTTTGTTAGAGATTTAACCTATGATCCTCCAACTCTCCTGGAATTAGCTGCACGGACCATTAAGATTCGAAATATTTCCTACACTCCCTATGATCTTCCTGGAAATCTTCTTAGATACTTGGGTTCAGCCAGCAATTGCCCAAACCCAAAGTGTGG|AGGAACCAGAGTGAGGGTACTCGAACAGTGACTGCCATCTGGTGGTTAACCAGAATCATCACCTTGTGTAGCCTGATGGTTACTAAGATGTCCACTCTTGACTCACATGGCATGCACTCGCAGCAGGGGACCAGTTGAAGGATGTCTGACTTTGGAGGGTCACCAGTTGAAGGATGTCTGATGAAGGAGCCTAGCGAAAT 11 1.0 0.872130004067968 0.35781266633730896 N Y 3.2708899988179203 3.65657572715995 3.2708899988179203 0 0.0 0.0 Y 0.0 N Y 5443 252 ENSG00000163428 ENSG00000175697 + - 3 3 120068186 120003941 coding intron LRRC58 GPR156 120043356 119883492 - - 0.0 120053709 119963325 - + N - 7.0949029906872 N SA468 1 0.0 1.0 1 0 1 N N 0.0 0.0 21 1.13777332475144 1.3350750573673 1.3350750573673 1.13777332475144 4 - 0.0476190476190476 0.983888930344368 HCT116-unstranded 1.0 64845 GAAGATAGGGCTGAGATGAGAGGAAATGGATTCAAGCCTCATTGGAAAAGCTGAGTTAGTTTGTTACTTTAATTTGAGCATAGACAATGGGGTCAAAGTCTGCAGAATGGTTCTCAGCCAAGTGATTGCTCTTTTCTTCTGAGAGTTTGAAAGTTGTGCTGGCATAGGTAAGTGATTCCCCTGGGATGGATGAAAGC|CGCTGTGGCGGCGGCGGAAAGTACCACCCGGGACAGCATGGTCAACGAAAGTCCAGGTAGCAATCTTAGCGTCCCTGTGACCCCGATAGGAGAATCTGTCAGGGCAGGACCAAGATGGCCGCTCACAAGTCTC 1 0.500762987670631 0.524176611694105 0.6329462971254761 Y Y 3.4655144718019804 3.41489476792923 3.41489476792923 0 0.0 0.0 Y 0.0 N Y 162 13230 ENSG00000143110 ENSG00000116459 - + 1 1 112021134 112005395 coding coding C1orf162 ATP5F1 112016414 111991486 + + 0.0 112020605 111992203 - + N - 0.314053402192675 N SA468 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 10 1.16408022243356 0.7497465839402591 1.16408022243356 0.7497465839402591 4 - 211.4 0.977025594597259 HCT116-unstranded 1.0 50769 GTCCACTTGGCAAAGTCCCTCCCTTTGCCCTCCAGTGTGAATCGGCCCCGAATTGACCTGATCGTGTTTGTGGTTAATCTTCACAGCAAATACAGTCTCCAGAACACAGAGGAGTCCCTGCGCCATGTGGATGCCAGCTTCTTCTTGGGGAAGGTGTGTTTCCTCGCCACAGGT|GCCGGGGCCAGCAGCCCTGCGCCCAGGACGGCGCTGCAGCCGCAGGAGTCGGTGGGCGCGGGGGCCGGCGAGGCGGCGCTGCCCCTGCCCGGGCTGCTCTTTGGCGCCCCCGCGCTGCTGGGCCTGGCACTGGTCCTGGCGCTGGTCCTGGTGGGTCTGGTGAGCTGGAGGCGGCGACAGCGGCGGCTTCGCGGCGCGTCCTCCGCAGAGGCCCCCGACGGAGACAAGGACGCCCCAGAGCC 1 0.8538578821263308 0.493912945724315 0.595849974356679 Y Y 3.5203902459336605 2.89885125461968 2.89885125461968 0 0.0 0.0 Y 0.0 N Y 1033 114 ENSG00000100162 ENSG00000159958 + - 22 22 42343168 42322822 coding coding CENPM TNFRSF13C 42334725 42321045 - - 0.0 42341229 42322335 - + N - - N SA468 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 7 1.13119660033092 1.06542935612563 1.13119660033092 1.06542935612563 4 - - 0.9683510425319992 HCT116-unstranded 1.0 14123 GTTGGTTTAATGGACAGCCGATCCACGCCGAGCTGTCACCCGTGACGGACTTCAGAGAAGCCTGCTGCCGTCAGTATGAGATGGGAGAATGCACACGAGGCGGCTTCTGCAACTTCATGCATTTGAAGCCCATTTCCAGAGAGCTGCGGCGGGAGCTGTATGGCCGCCGTCGCAAGAA|CACGTCATATGTGACAGAACCTTCTCAACCAAACAGTCCCGAGACCGCCCAGATGGCTGTCTTCCCATGCCCGTGCTCCGGGGGCAGCAGGACAGGCCTGGAAACTGAGTCTGCAGGTCTGTGGAGCTTTCAGGAGAGAGCCGGGCC 4 0.949195368566922 0.386405485081992 0.5643376757752641 Y Y 3.48908677906663 3.49168728493972 3.48908677906663 4 0.0 0.00984933850840952 Y 0.00984933850840952 N N 5309 61 ENSG00000160201 ENSG00000160200 + - 21 21 44527697 44497053 coding upstream U2AF1 CBS 44513066 44473301 - - 0.0 44514581 44503176 - + N - - N SA468 3 0.0 2.1666666666666696 1 5 1 N Y 0.0 0.0 6 0.7760534816223729 0.6247888199502161 0.7760534816223729 0.6247888199502161 4 - - 0.9289429828935442 HCT116-unstranded 1.0 164212 CAAGCTACGAAAATAAACGGCCTAATTCCAGCCACCTCTTTGTGAAAATAGAAGATCCTAAAATACTACAAATGGTGAATGTGGCCAAGAAGATCTCATCAGATGCTACAAACTTTACCATAAATCTGGTGACTGATGAAGAAGGAGAAACAAATGTGACTATTCAACTCTGGGATTCTGAAG|TACTATAGAATAAATGGGAGAAAGAAGAAAGCAAGCTAAATGGGAAACCGTGAATGAATGGAGGACGAAAGAAGAAAAAGGCAAAGTAAAGAGAGAAGTAATGTTTAAAAACTGAGAGATGAAAAGACAAGCAGGAGAAA 15 0.7965385093877021 0.520251132746296 0.582614232730314 Y Y 3.39487633072086 2.88636532132177 2.88636532132177 3 0.992879188712522 0.0 Y 0.0 N N 275 2122 ENSG00000253598 ENSG00000133731 + - 8 8 82608409 82598928 coding utr5p SLC10A5 IMPA1 82605842 82570196 - - 0.0 82606883 82598867 - + N - - N SA468 2 0.0 1.05882352941176 1 1 1 N Y 0.0 0.0 17 1.09831297822827 0.8286672769866021 1.09831297822827 0.8286672769866021 4 - - 0.98487565867275 HCT116-unstranded 1.0 164036 GGCCGTTCTGCTTCCAAATGCCTTACCGAAAGTGAAGTGAAAATCTGCCGGTGCACAGGGAAGTCTTAGTGTTCAGGCTCGATTATAGTGGGGCTGGAAACTGGTCTCACAAATCCAAAGGATCTTTTCTCTGATG|CTTCAGAATCCCAGAGTTGAATAGTCACATTTGTTTCTCCTTCTTCATCAGTCACCAGATTTATGGTAAAGTTTGTAGCATCTGATGAGATCTTCTTGGCCACATTCACCATTTGTAGTATTTTAGGATCTTCTATTTTCACAAAGAGGTGGCTGGAATTAGGCCGTTTATTTTCGTAG 9 0.0330032028610643 0.825017970330582 0.807561563768977 Y Y 3.28449294027173 3.39487633072086 3.28449294027173 0 0.992670327624721 0.0 Y 0.0 N N 2122 275 ENSG00000133731 ENSG00000253598 - + 8 8 82598928 82608409 upstream coding IMPA1 SLC10A5 82570196 82605842 - - 0.0 82601751 82606883 + - N - 0.214544300912335 N SA468 2 0.0 1.05882352941176 1 1 3 N Y 0.0 0.0 17 1.20354056895673 1.04569918286404 1.20354056895673 1.04569918286404 4 - 0.941176470588235 0.929910701601057 HCT116-unstranded 1.0 137753 GAATAAGTCTCCTCATATCTCTAATTGCAGTGTAGCCAGTGATTATTTAGATTTGGATAAGATTACTGTGGAAGATGATGTTGGTGGTGTTCAAGGGAAAAGAAAAGCAGCATCTAAAGCTGCAGCACAGCAGAGGAAGATTCTTCTGGAAGGCAGTGATGGTGATAGTGCTAATGACACTGAACCAGACTTTGCACCTG|AACACCAGTGTTACTTCACTCCCCTTTGTGGACACCAAGGGGAAGAAGAATACGGTAAGCTTCCCACACATTAGCAAGAAAGTCCTGCTGAAGTCATCCCTGCTGTATCAGGTGAGTGCAGACGGACTGGACCCTGAGAAGGCAGGTGAAAGACCTGGTTTT 7 0.8315489360560079 0.6822575851874821 0.38915847446118 Y Y 3.56335849579072 3.4210491438586 3.4210491438586 0 0.0 0.0 Y 0.0 N Y 699 460 ENSG00000111247 ENSG00000010219 + - 12 12 4669214 4723325 coding coding RAD51AP1 DYRK4 4647950 4671370 + + 0.0 4658002 4699496 + - N - 0.0871409206834247 N SA468 2 0.0 1.2 1 1 1 N Y 0.0 0.0 5 1.06542935612563 0.953625040976645 1.06542935612563 0.953625040976645 4 - 0 0.94395134352126 HCT116-unstranded 1.0 50724 GGAGCTGTTCCAGGTGGCCTGTGCCAAGCCACCACCCCTGGGCCTCTGCGACTACCCCTCATCCCGGGCCATGTATGCCGTCGACCTCATGCTGAAGTGGGACAACGGCCCAGATGGAAGGCGGGTGATGCAGCCGCAGATCCTGGAGGTGAACTTCAACCCCGACTGTGAGCGAGCCTGCAG|GGCGTTTTGTGGCAGTGCGTGTTTTGTGGCCAGCAGGAGCTATGTGGGACATTTGTTACAGATGAACAACCCCACGAGTTGCGGAGATGGCAGAAGTCTGGGTTGCACTTTCTCCAATCCCTAAGTGTCTGGCACGGACTCAGGTGTCCCTTGACACTTCAAAGGATACCCCTGTGCCCTGCGGGGACGGTGCATGCTCACCGGCATGCTGGAGCAGGAGACA 4 0.5261827827401211 0.7727970798623841 0.419774067153507 N Y 3.6052936758779 3.032709476481 3.032709476481 0 0.0 0.0 Y 0.0 N Y 11021 11021 ENSG00000100304 ENSG00000100304 + - 22 22 43583139 43583139 coding downstream TTLL12 TTLL12 43562628 43562628 - - 0.0 43564780 43564165 - + N - - N SA468 1 0.0 1.0 1 0 1 Y N 0.0 0.0 9 1.16408022243356 1.4205724748341702 1.4205724748341702 1.16408022243356 4 - - 0.950494517431644 HCT116-unstranded 1.0 103777 GGAGGTGGTGGCGGTGGAGGACAGCAGCGAGCTGGTGACTGGAAGTGTCCTAATCCCACCTGTGAGAATATGAACTTCTCTTGGAGGAATGAATGCAACCAGTGTAAGGCCCCTAAACCAGATGGCCCAGGAGGGGGACCAGGTGGCTCTCACATGGGGGGTAACTACGGGGATGATCGTCGTGGTGGCAGAGGAGGCTATGATCGAGGCGGCTACCGGGGCCGCGGCGGGGACCGTGGAGGCTTCCGAGGGGGCCGGGGTGGTGGGGACAGAGGTGGCTTTGGCCCTGGCAAGATGGATTCCAGG|CCCATGTCGCGCAGCACGTTAGCGGTGAGCTCGGCGCCGTAGGTCTCCAGGTAGAAGCTGACCAGCTTGTCGGTGAGGTCCAAGGCGTCCATGGACAGCAGCGCGCCCCGCGGGATGCGCCCGTAGCCCTCGCGCAGCGGCACCGACAGCAGCTTCAGCTTGAACTTCTTG 90 2.95118469794651e-10 0.6186706722174461 0.7802007001856459 N Y 3.44611852920956 3.48801385650339 3.44611852920956 1 0.0 0.0 Y 0.0 N Y 15770 576 ENSG00000089280 ENSG00000261359 + - 16 16 31203127 31214773 coding coding FUS AC106782.18 31191431 31213206 + + 0.0 31202431 31213781 + - N - - N SA468 1 0.128378378378378 1.0 1 0 1 N N 0.128378378378378 0.0 8 0.97335521423823 0.848397450248187 0.97335521423823 0.848397450248187 4 - - 0.907138095843458 HCT116-unstranded 1.0 187206 ATGACTGCCTGCCCCTGTACCACTCGGCAGGAAACATCATCGGCGTGGGGCAGTGTCTCATCTATGGGCTGACAGTCGTCCTCCGCAAGAAATTCTCGGCCAGCCGCTTCTGGGACGA|CAAAATACGCCCTCCTTCAGAAAATCCCTGCCACCTCGATAGGACGTCCTCTTCTTGAGCTCCCCTCTCCGGCCCTCCCTGATACAGCAAGGTTGAGCATTCGGGCACTGGCTTCCCGAACTCACTTCGACTCAGGCACAGCAGGCAAAGATTCAATGGGTAGGGCCGGACCGACTGCCCGACCTTCGCGGTGCTTCACTTGCCTCACT 4 0.5821673037868249 0.33585096342921505 0.516150900752222 Y Y 3.51782959285392 3.38127338926705 3.38127338926705 1 0.991551260851592 0.0 Y 0.797230260438198 N N 587 1079 ENSG00000130304 ENSG00000130313 + - 19 19 17616977 17632095 coding upstream SLC27A1 PGLS 17579578 17622432 + + 0.0 17599904 17622152 + - N - - N SA468 1 0.0 1.0 1 0 2 N Y 0.0 0.0 5 0.499831055960172 0.953625040976645 0.953625040976645 0.499831055960172 4 - - 0.9693809390517808 HCT116-unstranded 1.0 118643 AAGCTTTCCCCGGTGTCGGCGGCAGGTGGAATTTCCACGCTTTATCTGCGCCTGCGCCGCGCGGGATTCGCGGTCCGAGCTGAAGAGGTTCGCGGTCCGGTTTCACTTCTCCGAACCCTGAGGCAGTGTGTGAAGCTGGGACGCCAGCCATGTTCCAGACCGCTTGGCGCCA|GCTCTTGAGGATCTTGCTTGTCCAAACCCAGAAGACAGTGCATGAAGCCAGGGGACATCCGCCATGCTCCAAACAACTTGGCCTCAGTAGCGTTTCCATTCCCCAAACCTGCTCTGATCTCCCACCTGGAGAGAGGGGAAGCACCATGGGGCCCAGATCCCT 2 0.629509186198001 0.8288778915071658 0.3502175224424651 Y Y 3.6272104187567 3.57167229721571 3.57167229721571 0 0.0 0.0 Y 0.0029850746268657 N Y 690 1335 ENSG00000177842 ENSG00000172888 + - 3 3 40560227 40616176 coding utr5p ZNF620 ZNF621 40547483 40566369 + + 0.0 40547867 40567270 + - N - - N SA468 1 0.0 1.0 1 0 1 N Y 0.0 0.0 5 0.756323308360787 0.8286672769866021 0.8286672769866021 0.756323308360787 4 - - 0.977880471008242 HCT116-unstranded 1.0 1583 TACTTGCAGTCACGTCACACCTTGGATCTCTATCATCAAAACTATTCCACCTCGGAAATCTTACCTAAATGCAGCATGCCATCCTGAACGTCTCTCCCTGTCCTAGCTCTGTAACTGTTTACA|AGGCCTGAATATTTGGACAAGATGGCAGATTCATCATCATCTTCTTTCTTTCCTGATTTTGGGCTGCTATTGTATTTGGAGGAGCTAAACAAAGAGGAATTAAATACATTCAAGTTATTCCTAAAGGAGACCATGGAACCTGAGCATGGCCTGACACCCTGGAATGAAGTGAAGAAGGCCAGGCGGGAG 3 0.6853871492592671 0.243169966588582 0.529488065560368 N Y 3.3446273492087 3.50165665075055 3.3446273492087 2 0.991895893399828 0.00319488817891378 Y 0.0 N Y 1070 63 ENSG00000149054 ENSG00000158077 + - 11 11 7005863 7092539 utr5p utr5p ZNF215 NLRP14 6947635 7041677 + + 0.0 6949038 7059797 + - N - 0.259055982436883 N SA468 1 0.0 1.0 1 0 1 N N 0.0 0.0 5 0.664249166473387 0.7957836548839592 0.7957836548839592 0.664249166473387 4 - 0 0.9720938033158992 HCT116-unstranded 1.0 127156 GTTCCTGATCCTCAATGACTTCCCCTCCGTGAACGAGGCCATTGACCAGCGCAACCAGCAGCTGCGCACACTGCAGGAGGAGTGCGACCGGAAGCTCATCACGCTGCGAGACGAGATCTCCATTGACCTCTACGAGCTGGAGGAGGAGTATTACTCGTCCA|GCTGGCAAAACTCAAGGCTCAGAAACTGCAGGGCCCCCAAAAAAGAAAAGGAAGAAAACACAAAAGAAATTCCGGAAGCGAGAAGAGAAGGCTGCTGAGCACAAGGCCAAGTCCTTGGGGGAGAAATCTCCAGCAGCCTCTGG 6 0.35284203544817105 0.8201179516308391 0.6184931419946279 N Y 3.782089642372741 3.0606404875302298 3.0606404875302298 1 0.993029920898773 0.0 Y 0.330872406282242 N Y 1797 5692 ENSG00000148297 ENSG00000148296 + - 9 9 136214986 136203235 coding coding MED22 SURF6 136205160 136197552 - - 0.0 136210980 136201437 - + N - - N SA468 2 0.0 1.2 1 1 1 N N 0.0 0.0 5 0.9996621119203448 0.8089371037250159 0.9996621119203448 0.8089371037250159 4 - - 0.906481459530022 HCT116-unstranded 1.0 40796 TTAAAAGTTTACAGGAGAGCCGACCATTTTCAGTTGACTTTTTCAGGAAAATGATTCAGTTTGAAAAGGAGCAAGAATCCTGCAATATGGCGAACATAAGAGAATATTATGAGAGAGCTTTGAGAGAGTTTGGATCCGCAGATTCT|GCCCGTGGAACACAGAGCATTCCTAATGACAGTCCTGCCCGGGGTGAGGGCACCCATTCTGAAGAGGAAGGCTTTGCCATGGATGAGGAGGACTCTGATGGAGAACTGAATACCTGGGAGCTGTCAGAAGGGACAAACTGTCCACCCAAGGAACAGCCTGGCGATCTTTTTAAT 12 0.8592155120639859 0.980661376834176 0.66803599041648 Y Y 3.29227237536341 3.73808832274579 3.29227237536341 0 0.0 0.00311526479750779 Y 0.00311526479750779 N Y 713 1753 ENSG00000108651 ENSG00000172301 + - 17 17 30228784 30186356 coding coding UTP6 C17orf79 30187923 30178883 - - 0.0 30192385 30180049 - + N - - N SA468 2 0.0 1.1875 1 3 1 Y Y 0.0 0.0 16 0.97335521423823 1.17723367127462 1.17723367127462 0.97335521423823 4 - - 0.960304445632806 HCT116-unstranded 1.0 127051 AAGCGCAGATTGTGGGCGGCTGTGTCAGCTGACCCAAGGGGCCTTCGAGGTGCCTTAGGCCGCTTGCCTTGCTCTCAGAATCGCTGCCGCCATGGCTAGTCAGTCTCAGGGGATTCAGCAGCTGCTGCAGGCCGAGAAGCGGGCAGCCGAGAAGGTGTCCGAGGCCCGCAAAAG|CATATGATGCTGAGCTGGCTGCTCCAGAATGAACCACAGCTCTGAGAAGGGGAAGTAGAAACAGCTGGCGCCCTGCCATGGCCTGTGAACCACAGGTGGACCCGGGGGCCACTGGCCCATTGCCCCCCTCCTCCCCTGGCTGGAGTGCCCTGCCTGGAGGGAGCCCTCCTGGCTGGGG 1 1.0 0.333457596457057 0.367053702874524 Y Y 3.11547640886856 3.4937534244795 3.11547640886856 3 0.0 0.0 Y 0.0 N Y 3328 405 ENSG00000136888 ENSG00000157693 + - 9 9 117360653 117408702 intron utr5p ATP6V1G1 C9orf91 117350026 117373486 + + 0.0 117350200 117379398 + - N 0.912092511997578 0.134297937244005 N SA468 1 0.0 1.0 1 0 1 N Y 0.0 0.0 5 0.92731814329453 1.11804315148986 1.11804315148986 0.92731814329453 4 181 0.8 0.9626966192847212 HCT116-unstranded 1.0 28956 ACCTGTTCCTGGGCAGCTGCAGTCACTCGTCAGACCTGCAGGGGCTGCAGGCCTGTGGCATCACAGCCGTCCTCAACGTGTCCGCCAGCTGCCCCAACCACTTTGAGGGCCTTTTCCGCTACAAGAGTATCCCTGTGGAGGACAACCAGATGGTGGAGATCAGTGCCTGGTTCCAGGAGGCCATAGGCTTCATT|GGGCTCATCCTGGAAGAAACCCCAGAGAGCAGCTTCCTCATCGAGGGGGACATCATCCGGCCGAGTCCCTTCCGACTGCTGTCAGCAACCAGCAACAAATGGCCCATGGGTGGTAGTGGTGTCGTGGAGGTCCCCTTCCTGCTCTCCAGCAAGTACGATGAGCCCAGCCGCCAGGTCATCCTGGAGGCTCTTGCGGAGTTTGAACGTTCCACGTGCATCAGGTTTGTCACCT 3 0.03910076663596 0.6798908440707299 0.393093731182052 Y Y 3.5995405275326497 3.3310244077548905 3.3310244077548905 2 0.0 0.0 Y 0.0 N Y 2062 54 ENSG00000158050 ENSG00000188886 + - 2 2 96811179 96804175 coding coding DUSP2 ASTL 96808905 96789589 - - 0.0 96809893 96801151 - + N - - N SA468 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 6 1.04569918286404 1.02596900960246 1.04569918286404 1.02596900960246 4 - - 0.9100784191425452 HCT116-unstranded 1.0 92439 TAAACATTCTGAGAACAGCTTACTTCTCACTAAAACAGAACCAAAACATGTGACAGAAAATCAGAAATCAAAGACTTTGAATGTGCCTAAAGAGCATGAAGACAATATATTTACACCTAAACCAACACTCTTT|ACAAGATGTGAAATGGAGAAGTATCTGACACCTCAGCTTCCTCCAGTTCCTATAATTCCAGAGCATAAAAAGTATAGACGAGACAGTGCCTCAGTCGTAGACCAGTTCTTCACTGACACTGAAGGGTTACCTTACAGTATCAACATGAACGTCTTCCTCCCTGACATCACTCACCTGAGAACTGGCCTCTACAAATCCCAGAGA 7 0.715180258423818 0.508410271744239 0.7529082254481341 N Y 3.29231222815676 3.65913638023969 3.29231222815676 3 0.0 0.0 Y 0.0 N Y 331 4734 ENSG00000083535 ENSG00000102554 + - 13 13 73590591 73651676 coding coding PIBF1 KLF5 73356197 73629114 + + 0.0 73573133 73635999 + - N - - N SA468 1 0.0 1.0 1 0 1 Y N 0.0 0.0 6 0.848397450248187 1.06542935612563 1.06542935612563 0.848397450248187 4 - - 0.980911873451007 HCT116-unstranded 1.0 179439 GGACAACACCTGCAGTGTACTGGAAAGATATATGGCAGTGTATGGGAGAAATTACATCGAGCCTTTGCCATTTGGAGTGGCTTTGGTATGACCCTGACTGGCGTTCACACATGTGGAGATTACATGTTTAGTGGCCACACAGTCGTCCTAACTATGCTGAATTTCTTTGTCACCGAAT|CAATGTGTATTCCTCCATCATATGCTGACCTTGGCAAAGCTGCCAGAGATATTTTCAACAAAGGATTTGGTTTTGGGTTGGTGAAACTGGATGTGAAAACAAAGTCTTGCAGTGGCGTGGAATTTTCAACGTCCGGTTCATCTAATACAGACACTGGTAAAGTTACTGGGACCTTGGAGACCAAATACAAGTGGTGTGAG 8 0.896225814459354 0.803331756160985 0.6855153794115971 N Y 3.6868062714637406 3.65657572715995 3.65657572715995 1 0.0 0.0 Y 0.00263852242744078 N Y 885 22902 ENSG00000156671 ENSG00000165637 + - 10 10 76941881 76991206 coding coding SAMD8 VDAC2 76859344 76969912 + + 0.0 76935974 76971988 + - N - - N SA468 2 0.0 2.0 2 10 1 Y N 0.0 0.0 10 1.11146642706933 1.13119660033092 1.13119660033092 1.11146642706933 4 - - 0.948361523550862 HCT116-unstranded 1.0 1591 ACGGATCCGTGTGAAGACCTACACAGATGAGCTGACGCCCATTGAGTCTGCTGTCTCTGTGTTCAAGGCAGCCAACTGGTATGAAAGGGAGATCTGGGACATGTTTGGAGTCTTCTTTGCTAACCACCCTGATCTAAGAAGGATCCTGACAGATTATGGCTTCGAGGGACATCCTTTCCGGAAAGACTTTCCTCTATCTGGCTATGT|TGAGCTGCTCTGGGCTGGGCTGGAGCTGGATGTCATGGGGCAGCTGCACATCCAGGATGAGGAACTAGCGTCCACACACCCAGGCCGCCGACTCAGACTCCTCCTGCAGCACCACGTGCCCAGTGACTTGGAGGGCACTGAGCAGTGGCTGCAGCAGCTCCAGGACCTGCGGAAGGGGCCTCCTCTTAGCACTTGGGACTTTGAA 7 0.989645229477227 0.673035483340378 0.39947642546896295 Y Y 3.56129235625094 2.8946256895842795 2.8946256895842795 0 0.0 0.0 Y 0.0 N Y 3568 116 ENSG00000213619 ENSG00000196666 + - 11 11 47606114 47610746 coding coding NDUFS3 FAM180B 47586888 47608198 + + 0.0 47604020 47609591 + - N - - N SA468 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 8 1.1246198759103898 1.2956147108441298 1.2956147108441298 1.1246198759103898 4 - - 0.97096679693963 HCT116-unstranded 1.0 119218 GGCCTTCGTTGCTCGCACAGCTCCCTGCCCAGGCTAGGAGGCCGGCTTGCGGGGTTGAGTGGCCCGAGCTAAGGGTGCGGAGACCTAAGGGCGGCGACTACGACGGCGTTGATATCGGTGGTAACGACGGCCTCAGCAGGCGGGGAAGATGAAAGG|GTTCCTATTACTGTAACCATGCCAGAAATGACAGAGAATGAGACGCCTACAAAAAAGCAGCACAGAAAGAAAAACCGGGA 24 1.74129310509799e-07 0.975578239726684 0.770816309854192 Y Y 3.5293265419746 3.6491271616355 3.5293265419746 1 0.0 0.0 Y 0.0 N Y 15369 5422 ENSG00000121579 ENSG00000176542 + - 3 3 113465147 113415493 coding utr5p NAA50 KIAA2018 113437841 113367232 - - 0.0 113464789 113393743 - + N - - N SA468 1 0.0 1.0 1 0 2 N Y 0.0 0.0 6 1.02596900960246 0.947048316556116 1.02596900960246 0.947048316556116 4 - - 0.9434412515478532 HCT116-unstranded 1.0 119216 CGAGTGCACGTGTGGAGAAGCGGCGGCACAAGCGCGGCGGCGGGAGACACTCCCGCCCCCACCAGACTCAAGCCCTCACTCGACTCTCGCGGCCTTCGTTGCTCGCACAGCTCCCTGCCCAGGCTAGGAGGCCGGCTTGCGGGGTTGAGTGGCCCGAGCTAAGGGTGCGGAGACCTAAGGGCGGCGACTACGACGGCGTTGATATCGGTGGTAACGACGGCCTCAGCAGGCGGGGAAGATGAAAGG|GTTCCTATTACTGTAACCATGCCAGAAATGACAGAGAATGAGACGCCTACAAAAAAGCAGCACAGAAAGAAAAACCGGGAGACACACAATGCAGTGGAGAGGCATAGAAAGAAGAAAATTAATGCTGGGATAAACAGAA 33 1.0 0.8132746385940219 0.5830378188146321 Y Y 3.5293265419746 3.6491271616355 3.5293265419746 1 0.0 0.0 Y 0.0 N Y 15369 5422 ENSG00000121579 ENSG00000176542 + - 3 3 113465147 113415493 coding utr5p NAA50 KIAA2018 113437841 113367232 - - 0.0 113464789 113393743 - + N - - N SA468 1 0.0 1.0 1 0 2 N Y 0.0 0.0 13 1.4008423015725902 0.88128107235083 1.4008423015725902 0.88128107235083 4 - - 0.9920343934115308 HCT116-unstranded 1.0 1208 ATGATGCTGAAGAGACTGCTCTGGAAGGCTATTCCACAATCATTGATGATGAAGATAACCCTGTTGATGAGTATCAGATATTTAAAGCTATCTTTCAAACTATTCAAAATCGTAATCCTGTGTGGTATCAGGCACTGACTCACGGTCTTAATGAAGAACAAAGAAAACAGTTACAGGACATAGCAACTCTGGCTGATCAAAGAAGAGCAGCCCATG|TTCGCAACACAAGAACATACAAAAGACCGTAGCGACAACCATTTCTGACGCCTTCAACTTTTAAATCCAAATTACGTGAAACCACAAAGCATCAGTGGTGTCTCCCCGAGGAATCCAAGACCCCCCGGCCGGTTGCCAAGCCGCCGGAATTTCAGCAGGAGAGGAAGGCTCACCCTCCCACCGCATGGCGATGCCCGGGAGACTGGAGAAGCTCAGGCAGGCT 55 0.962869924700375 0.8228318030792192 0.5551120734549561 Y Y 3.41848849077886 3.3310150601850803 3.3310150601850803 0 0.0 0.0 Y 0.0 N N 22394 2106 ENSG00000205339 ENSG00000166478 + - 11 11 9469673 9550071 coding upstream IPO7 ZNF143 9406169 9481866 + + 0.0 9463744 9481687 + - N - - N SA468 4 0.0 1.75471698113208 1 21 1 N Y 0.0 0.0 53 1.381112128311 1.4731862701984 1.4731862701984 1.381112128311 4 - - 0.945374978052632 HCT116-unstranded 1.0 17834 CAAGATTGAAGGAGATCAAGGAAGAGCTTCTGCATTCTGAGAAGCTTAAGACATACTTTGAAGACAACCCTAGGGACCTCCAGCTGCTGCGGCATGACCTACCTTTGCACCCCGCAGTGGTGAAGCCCCACCTGGGCCATGTTCCTGACTACCTG|GGCCCAGAGTGAGCCTTACACAACCATCCACCAGCCTGGCTACTGCGCCTTCTATGACGAATGTGGGAAGAACCCAGAGCTGTCTGGAAGCCTCATGACACTCTCCAACGTGTCCTGCCTGTCCAACACGCCGGCCCGCAAGATCACAGGTGATCACCTGATCCTATTACAGAAGATCTGCCCCCGCCTCTACACCGG 9 0.729364813143231 0.971289983650488 0.504389288701731 Y Y 3.51360402781852 3.5339931873874804 3.51360402781852 0 0.0 0.0 Y 0.0 N Y 10575 524 ENSG00000136271 ENSG00000015520 + - 7 7 44614650 44580914 coding coding DDX56 NPC1L1 44605016 44552134 - - 0.0 44607717 44579941 - + N - - N SA468 1 0.0 1.0 1 0 1 N Y 0.0 0.0 20 0.933894867715059 0.986508663079288 0.986508663079288 0.933894867715059 4 - - 0.985264932594485 HCT116-unstranded 1.0 179426 GGGGAGAACCGCCTGGGAACAGACGAGTCCAAGTTCAATGCGGTTCTGTGCTCCCGGAGCCGGGCCCACCTGGTAGCAGTTTTCAATGAGTACCAGAGAATGACAGGCCGGGACATTGAGAAGAGCATCTGCCGGGAGATGTCCGGGGACCTGGAGGAGGGCATGCTGGCCGTGG|AACTGGTTTCAAAATAAAAGCCAGACCACCACTTAGAGAGAGACACAGAATGTTCACTGCCAGGGAACTGCATGATTCCTCTGCCAAAGGCCACCCATTTACAAGAATCCAGGAAAACCAGGTGGAATCTCCCAATGATGACCCTGAGCAGAACTTCTTGTACCCAGGAAGTTCTACTGGGTGGAGCTGGCCACTCTTCCGTGGAGACACAGGGGACTCCCAATTAACATGATG 3 0.43737204909508703 0.878198063829872 0.337525516911757 N Y 3.34421677405477 3.47552369040616 3.34421677405477 0 0.0 0.0 Y 0.0 N Y 10108 218 ENSG00000122359 ENSG00000230091 + - 10 10 81965433 81838668 coding intron ANXA11 RP11-369J21.5 81910645 81806616 - - 0.0 81918856 81808934 - + N - - N SA468 1 0.0 1.0 1 0 1 N N 0.0 0.0 5 0.782630206042902 0.993085387499816 0.993085387499816 0.782630206042902 4 - - 0.96555337844322 HCT116-unstranded 1.0 64827 CTAAAGAATGCTGATAGTCAGAATGGGAAAGACAACCCTACTACTGCAAGGCATGCTTTGATGTCCCTTCATCATTGCTGGGTCCTCAATGCAGGGGGCCATTTCATAGATGAAAATGGCTCTCGCCTTCCAGCAATTCCCCGCAGTGCTACAAATGGGAAGTCAGAGACCATCACAGCTGATGTCAATCACAACTTGAAGGATGCCAATGATGTACCAATCCAATGTGAAATCTCTCCTCTTATCTCCTATGCTGGAGAA|CCTCCATCAAGGGAGACCTGCAAGTTGCCTGGGGTTCAGTGCTCTAGAAAGTTCCAAGGTTTGTGGCTTGAATTATTCTAAAGAAGCTGAAATAATTGAAGAGAAGCAGAGGCCAGCTGTTTTTGAGGATCCTGCT 2 0.183595559322475 0.734119642654489 0.551022226907567 Y Y 3.42100929106525 3.58424216889964 3.42100929106525 0 0.0 0.0 Y 0.0 N Y 2238 294 ENSG00000117143 ENSG00000162733 + - 1 1 162569627 162750237 coding utr5p UAP1 DDR2 162531321 162601163 + + 0.0 162567648 162625001 + - N - - N SA468 1 0.0 1.0 1 0 1 N Y 0.0 0.0 11 1.36795867946995 0.947048316556116 1.36795867946995 0.947048316556116 4 - - 0.970618429394282 HCT116-unstranded 1.0 117959 ACCATTAGCTCTTCCACTTGGGACTGAGGACCATCACATGCTTCTGCCTGTCACGGATACTCAGTCTCCTACATCAGATACATTGTTGAGGTCAACTGTGAATGGGTATTCAGAACCACAGTTGATTTTTTTACAACAATTATACTGACTTTGTAAGGAATATGGAATTGCTAAGATATCATTGGTAGCAAACATCTCTG|ATTTTGAATATTTGAGCTTTTCTTCACAATAATGTCAAAAGACATAAAATCAGTAGAACATTCACCTAAAATTCATCAGAGAAATGATCCACAGCACGTCAATGATAGAACATTTTTCATTGATGCCTCTAATCAGAGCTTGACTGCCATTCCTT 7 0.4379658108339979 0.654747724043689 0.849012216048994 N Y 3.5978451103534503 3.23065023590994 3.23065023590994 0 0.0 0.0 Y 0.0 N N 1727 93 ENSG00000085274 ENSG00000188306 + - 3 3 169507504 169555563 utr3p upstream MYNN LRRIQ4 169490853 169539710 + + 0.0 169504518 169539679 + - N 3.40087400742222 - N SA468 1 0.0 1.0 1 0 1 N N 0.0 0.0 8 1.32849833294677 1.03912245844352 1.32849833294677 1.03912245844352 4 12.125 - 0.933521697671405 HCT116-unstranded 1.0 64048 TGAAGACAGAGCAGCTGAGAAGAAATGGCTTTGGAAAGAATGGCTTCTTGCAGAGCCGCAGTTCCAGTCTGTTCTCCCCTTGGAGAAGCACTTGCAAAGCAGAGTTTGAGGACTCAGACACCGAAACCAGTAGCAGTGAAACATCAGATGACGATGCCTGGAA|GTCTTGGCTGGTTTCAGGAAACGGGTCCCATCCCATGGACTCCCACTCTGGGGAGCCTGCGCTCCTGCCCTGTGGGACCTGTGACATGGTTTTCCGCTCCTCAGCTCTGTTAGCCACCCATACTCAGCGCTTCTGCATTGGCCACCCGACCCAAGAGATGACATTTGGAGC 2 1.0 0.578356178394115 0.32676719391646697 Y Y 3.5816815158199 3.4315223707792097 3.4315223707792097 1 0.0 0.0 Y 0.0 N N 2777 52 ENSG00000159592 ENSG00000159588 + - 1 1 46153785 46089729 coding utr5p GPBP1L1 CCDC17 46092976 46085716 - - 0.0 46093932 46089615 - + N - - N SA468 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 5 1.07200608054616 0.986508663079288 1.07200608054616 0.986508663079288 4 - - 0.967281829924623 HCT116-unstranded 1.0 40907 AGAACTGTTGAGAGTGAAGCTGCATCTTATCTGGACCAGATTTCTAGATATTATATTACAAGAGCCAAATTGGTTTCTAAAATAGCTAAATATCCCCATGTGGAGGACTATCGCCGCACCGTGACAGAGATTGATGAGAAAGAATATATCAGCCTTCGGCTCATCATATCAGAGCTGAGGAATCAATATG|GCTGAAAAACTGGGTGGTAGCTGAAGACGTGGTGTTTAAACCTGTGGCTGCCCCCTGGAACCCGGAGCACTGGCTACAGCGCCCACAGCTGACTCGGCAGGTCCTGGGAAAGGAGGACCTGACAGCTTTTTCCTTGGGAAGCCCCCTACCCCGCTACCTCTACCTGGCTAGCAAC 16 0.43492504389346 0.97991148540266 0.6019984469930101 Y Y 3.60888739872753 3.1363999347708305 3.1363999347708305 0 0.0 0.0 Y 0.0 N Y 9172 2816 ENSG00000131467 ENSG00000131480 + - 17 17 40995523 41002724 coding coding PSME3 AOC2 40976402 40996617 + + 0.0 40991397 41001103 + - N - 0.937905396164043 N SA468 1 0.0 1.0 1 0 5 Y Y 0.0 0.0 26 1.381112128311 1.1246198759103898 1.381112128311 1.1246198759103898 4 - 7.03846153846154 0.986843536799404 HCT116-unstranded 1.0 114367 ATACAATGCAGACGAAGCTAGAAGTCTGAAGGCATACGGCGAGCTTCCAGAGCATGCTAAAATCAATGAAACTGATACATTTGGTCCTGGAGATGATGATGAAATTCAGTTTGATGACATTGGAGATGATGATGAAGATATTGATGAC|GCATGGAGGGATTTTTGAAATCAGATGAGAGGCAGAGATTGGCCAAAGAAAGACGAGAAGAAAGAGAAAAATGTCTGGCTGCTCGGGAGCAACAGATCCTGGAGAAACAGAAAAGAGCCAGGCTGCAGTACGAAAAGCAAATGGAGGAGCGATGGCGAAAACTGGAAGAGCAGCGGCAGCGGG 11 1.0 0.7574339129426241 0.656039982821491 Y Y 2.84284912476227 2.89359261981439 2.84284912476227 1 0.0 0.0 Y 0.0 N Y 9098 665 ENSG00000173674 ENSG00000184368 + - X X 20159962 20135035 coding coding EIF1AX MAP7D2 20142636 20024831 - - 0.0 20148634 20082923 - + N - - N SA468 3 0.0 2.1 2 20 1 N Y 0.0 0.0 20 0.979931938658759 1.07200608054616 1.07200608054616 0.979931938658759 4 - - 0.927456350758924 HCT116-unstranded 1.0 119127 CGGAAGTGGCGAAGGCGGGGTCGGCGCTGCCGGGTGAAATCGTAGGACAGTGAAGATGCTGCTGGAATTGTCCGAGGAGCATAAGGAACACCTGGCCTTCCTGCCTCAAGTGGACAGCGCGGTGGTCGCCGAGTTTGGGCGGATTGCTGTGGAATTCCTGAGACGCGGCGCAAACCCAAAAATCTACGAAGGCGCCGCCAGAAAACTCAATGTGAGTAGTGACACTGTCCAGCATGGTGTGGAAGGATTAACGTATCTCCTCACTGAGAGCTCAAAGCTCAT|GAAGATGAATCCGGCCTCGGCGCCCCCTCCGCTCCCGCCGCCTGGGCAGCAAGTGATCCACGTCACGCAGGACCTAGACACAGACCTCGAAGCCCTCTTCAACTCTGTCATGAATCCGAAGCCT 3 0.00051340691578749 0.9905924027538822 0.662474483088243 Y Y 3.707857778442 3.07676422927044 3.07676422927044 0 0.0 0.0 Y 0.0 N Y 626 4792 ENSG00000114744 ENSG00000018408 + - 3 3 149470286 149454501 coding utr5p COMMD2 WWTR1 149456257 149235022 - - 0.0 149469190 149375096 - + N - - N SA468 1 0.183783783783784 1.0 1 0 1 Y Y 0.0 0.183783783783784 5 0.578751749006515 0.966778489817702 0.966778489817702 0.578751749006515 4 - - 0.905026862454268 HCT116-unstranded 1.0 119261 CAACTGGAAAGACAGCATTTTGACTAAAAACTTGATACTTAAAATACTTGTTTCATCAATAATCATTGTTTGTGGGACTTTGTTTGTCTTCTGGCGTGAGCTACGAGACAATGTGATTACACCTCGAGACACAACAATGACCTTCACATGCTTTGTGTTTTTTGACATGTTCAATGCACTAAGTTCCAGATCCCAG|GAACTGACCAACACTGGATGAATTTGACCATTTCTTAGGAGACTGGAATGTTAAGTTTCTATAAATGAATGAACCAGTTCTCTCTTGTTTGGAGCAATGCTGAAATTCCAAGAGGCAGCTAAGTGTGTGAGTGGATCAACAGCCATTTCCACTTATCCAAAGACCTTGATTGCAAGAAGATACGT 6 0.7700814800420551 0.95466716178366 0.37006501112994 Y Y 3.46873747229103 3.40169305405954 3.40169305405954 0 0.994608744870525 0.0 Y 0.0 N Y 2746 130 ENSG00000017260 ENSG00000114670 + - 3 3 130735556 131069309 coding utr5p ATP2C1 NEK11 130569439 130745694 + + 0.0 130717233 130748457 + - N - - N SA468 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 5 0.979931938658759 1.13119660033092 1.13119660033092 0.979931938658759 4 - - 0.9850311013421872 HCT116-unstranded 1.0 119011 AAAACTTCTTAACCAGCTCACAATTAGACAAGATATGATTTGTTGTGATCACGTTGAGATAGTTCTGAAGACCTTTCTGCCTTTCAGCTATGAATTCACGATCCATGTTACCAATCAATTTTTTGGGAGGAAGAGGTAGACTTAGGCCTGCAAT|CCACTCTTCGTCGGACTAGCCTGACGCCTGACCAGACTCCTATTCGCCGCAAGGACCCGCCAAGGCTTGGGGCTCCCCGGCAGCAGCCACAGCTGGGCCCGAGAAACTCCTGGTGTCTTTACGTTTGGCTTCTCCTCGTCCCGCCCCACGAAGCGTGACGCCCAGGCGGAT 5 0.0999765245523051 0.8382555004175909 0.588756129488972 Y Y 3.5361526128830896 3.55504469436573 3.5361526128830896 0 0.0 0.0 Y 0.0 N Y 989 223 ENSG00000168297 ENSG00000255154 - + 3 3 58411748 58305920 coding utr5p PXK RP11-80H18.3 58318607 58291974 + + 0.0 58368241 58292144 - + N - 1.65758459803827 N SA468 1 0.0 1.0 1 0 2 N Y 0.0 0.0 6 0.8155138281455441 1.11804315148986 1.11804315148986 0.8155138281455441 4 - 6.5 0.968597524973674 HCT116-unstranded 1.0 168044 ATAGTTAATTGTGTGAGGAACACGCCGGCCTTTTTAGCCGAAAGACTGCATCGAGCCTTGAAGGGTATTGGAACTGATGAGTTTACTCTGAACCGAATAATGGTGTCCAGATCAGAAATTGACCTTTTGGACATTCGAACAGAGTTCAAGAAGCATTATGGCTATTCCCTATATTCAGCAATTAAA|TTCTGTCTTCCTGAGGCTGCTGTTTCTGGGCATGGCCAGGGGATCTTCAGACTTTACAAACCAGTTGTGCAGAGCCAGGCATTTCAATAAGGAACAAAATGCTGAGTAACAACATGAAGTCAGAGTGTTGCTTGCCAAGAGCTGGGAGGCCTGGGTGGTTTCCCAATCTTAAAGAAGCA 11 1.0 0.777364267553483 0.378939663852048 N Y 3.3571972208926297 3.27654986120733 3.27654986120733 1 0.0 0.0 Y 0.0 N N 6942 149 ENSG00000138772 ENSG00000251442 + - 4 4 79531597 79603853 coding intron ANXA3 RP11-792D21.2 79472673 79567057 + + 0.0 79525553 79567156 + - N - - N SA468 1 0.0 1.0 1 0 1 N N 0.0 0.0 14 1.22984746663885 1.21011729337726 1.22984746663885 1.21011729337726 4 - - 0.983888930344368 HCT116-unstranded 1.0 187073 CTCTTCTGCATCAATGTGCTGTCTGAGGTCTGTGGGCAGGACATCACCACCAAGCACATGCTACCCACGGTTCTGCGCATGGCTGGGGACCCGGTTGCCAATGTCCGCTTCAATGTGGCCAAGTCTCTGCAGAAGATAGGGCCCATCCTGGACAACAGCACCTTGCAGAGTGAAGTCAAGCCCATCCTAGAGAAGCTGACCCAGGACCAGGATGTGGACGTCAAATACTTTGCCCAGGAGGCTCTGACTG|GGACACTTGACATTCAGGGACGTGGCCATAGAATTCTCTCAGGAGGAGTGGAAATGCCTGGACCCTGTGCAGAAGGCTTTATACAGGGATGTGATGTTGGAGAACTACAGGAACCTGGTCTCCCTGGGTAAGGATAATGCCCCTC 9 0.6684160471106451 0.8410684350567679 0.486836864046959 N Y 3.61936062564813 3.73912139251568 3.61936062564813 0 0.0 0.0 Y 0.0 N Y 20527 1210 ENSG00000105568 ENSG00000196214 + - 19 19 52730687 52795977 coding coding PPP2R1A ZNF766 52693274 52772824 + + 0.0 52729061 52785364 + - N - 0.142694289757488 N SA468 15 0.0 4.0 1 3 2 N N 0.0 0.0 6 1.26930781316202 0.8089371037250159 1.26930781316202 0.8089371037250159 4 - 9.66666666666667 0.906075748207499 HCT116-unstranded 1.0 1783 GTTGGCAGTGCCTGCTTCACTGCGTCCTGCACCCTCATGGCCCTGGCCTCCCGGGACGTGGAAGCTCTGTCTCCGTTGATATTCCTGGCGCTGTCCCTGAATGGCTTTGGTGGCATCTGCCTAACGTTCACTTCACTCAC|GGGGACGGTATTCAGAATTCGAGCGCAGGAGCTCCGCTTCTCCACCTGCTCCCGGGGAGCTATTGGGATCCAGAGAATCACCCGCTGATGGTTTTTGCCCAGGCCTGAAACAACCAGAGAGCTACGGGAAAGGAAGGGCTTGGCTTGCCAGAGGAATTTTCCAAGTGCTCAAACGCCAGGCTTACGGCGCCTGTGATCCGTCCAGGAGGACAAAGTGGGATTTGAAGATCCACTCCACTTCTGCTCATGGCGGGCCAGGGCCT 1 0.0073797655224163705 0.493912945724315 0.595849974356679 N Y 3.56335849579072 3.643343508066721 3.56335849579072 0 0.0 0.0 Y 0.002475247524752589 N Y 60 1608 ENSG00000149150 ENSG00000134802 + - 11 11 57283259 57195053 coding utr5p SLC43A1 SLC43A3 57252007 57174427 - - 0.0 57268252 57194125 - + N - - N SA468 1 0.0 1.0 1 0 1 N N 0.0 0.0 7 0.8352440014071301 1.07200608054616 1.07200608054616 0.8352440014071301 4 - - 0.927698131033574 HCT116-unstranded 1.0 179052 AGGACGATGCCGGCGGTGATCTTCTGGCAGTGGGTGAACCAGTCCTTCAATGCCTTAGTCAACTACACCAACAGGAATGCGGCTTCCCCCACATCAGT|CAGGATAAGGAAGCCTGTGTGGGTACCAACAATCAAAGCTACATCTGTGACACAGGACACTGCTGTGGACAGTCTCAGTGCTGCAACTACTACTATGAACTCTGGTGGTTCTGGCTGGTGTGGACCATCATCATCATCCTGAGCTGCTGCTGTGTTTGCCACCACCGCCGAGCCAAGCACCGCCTTCAGGCCCAGCAGCGGCAACATGAAATCAACCTGATCGC 12 0.855799086097212 0.4720289822956 0.156717858688798 Y Y 3.59061781186084 3.5816815158199 3.5816815158199 0 0.0 0.0 Y 0.0 N Y 623 1719 ENSG00000156398 ENSG00000166272 + - 10 10 104498951 104576021 coding coding SFXN2 WBP1L 104474297 104503727 + + 0.0 104488286 104557750 + - N - - N SA468 3 0.0 1.3 1 2 1 N Y 0.0 0.0 10 0.979931938658759 0.8418207258276591 0.979931938658759 0.8418207258276591 4 - - 0.9154854517969492 HCT116-unstranded 1.0 17566 AACCCGGCCTCCCCTCCCCTCTCCCTGCTTGTGCTGCACAGGCTGCTCTGTGAGCACTTCAGGGTCCTGTCCACGGTGCACACGCACTCCTCGGTCAAGAGCGTGCCTGAAAACCTTCTCAAGTGCTTTGGAGAACAGAATAAAAAACAGCCCCGCCAAGACTATCAGCTGGGATTCACTTTAATTTGGAAGAAT|GCCGACAGAGTCTATCATCCCCATCCATCTGGCTGCCAAGTACCACAAGGCCCAGAGTCTGCTCTGCCTGTTACGGCACGGTGCTGACCCAGAAGTCAGGGACACGACAGGCCTCACCACACTCAACTTAATGCTACTGCACTGGCCAGTCACTTCCACCACGT 2 0.743566076435483 0.877306953967143 0.8475436917181851 Y Y 3.51935717616377 3.58337693299909 3.51935717616377 2 0.9939193766937672 0.0 Y 0.0 N Y 1418 129 ENSG00000106305 ENSG00000157999 + - 7 7 6063465 6076017 coding coding AIMP2 ANKRD61 6048876 6071007 + + 0.0 6057676 6072470 + - N - - N SA468 1 0.0 1.0 1 0 1 N Y 0.0 0.0 5 1.0588526317051 0.8286672769866021 1.0588526317051 0.8286672769866021 4 - - 0.974576422629511 HCT116-unstranded 1.0 164630 GAAGTCAATGTGCAAAGAAGCATAATAATTCACCAACACTGAAGTTGCAGCTAACAGAAAGGCTGAGCTGTACGTGTAAAACTTGAAAAGTGATCGTTGTGACAAGATCAGAACAATACTGGATGCAAATA|CACCTCAAGACACAATTTTTGGGCAGGTGAACAACCCTGGGCCCTCTTCGAAGGAACAGGATCCGGGAGCTGCGTGAGCATACAGGGACTGCCTGGGGCAACACGATTCCTCAGCTCCTGCAGGTGCTGCTCTGGAAGCGTCTCTCCCAGCACCGGTAGCGCCACCGAGCCATCCGGCATCTTTTCCACACGGTGCTGTGTATCAAAGAGTTTCTGCCTC 6 1.0 0.3409899272144329 0.817155201149019 N Y 3.612079893993029 3.34256120966892 3.34256120966892 0 0.0 0.0 Y 0.0 N Y 3329 1096 ENSG00000170881 ENSG00000183665 - + 8 8 125500155 125474391 coding coding RNF139 TRMT12 125486979 125463048 + + 0.0 125498072 125463498 - + N - 0.761232393104903 N SA468 1 0.0 1.0 1 0 1 N N 0.0 0.0 8 0.7497465839402591 0.7892069304634299 0.7892069304634299 0.7497465839402591 4 - 16.125 0.953559413176138 HCT116-unstranded 1.0 187473 ACTTCCGCACGGGCAAGATGCTGATGAGCAAGATGAACAAGAGCCGCCAGCGCGTGCGCTACGACTCCTCCAACCAGGTCAAGGGCAAGCCCGACCTGAACACGGCGCTGCCCGTGCGCCAGACGGCGTCCATCTTCAAGCAGCCGGTGACCAAGATTACCAACCACCCCAGCAACAAGGTCAAGAGCGACCCGCAGAAGGCGGTGGACCAGCCGCGC|CAGGCTGCAAGATCAAGGCCCTGCGGGCCAAGACAAACACCTACATCAAGACCCCAGTGCGGGGCGAGGAGCCGGTCTTCATCGTGACCGGCCGGAAGGAGGACGTGGAGATGGCCAAGCGTGAGATCCTGTCGGCGGCCGAACACTTCTCCATCATCCGCGCCACGCGCAGCAAGGCCGGGGGTCTGCCCGGCGCCGCCCAGGGCCCGCC 2 0.635325213790219 0.621281707437272 0.32676719391646697 N Y 3.34888341946764 3.32423818963975 3.32423818963975 3 0.0 0.0 Y 0.0 N Y 4696 4216 ENSG00000071655 ENSG00000181588 + - 19 19 1592882 1568057 coding intron MBD3 MEX3D 1576677 1554668 - - 0.0 1584539 1556922 - + N - 1.99440625347815 N SA468 1 0.0 1.0 1 0 1 Y N 0.0 0.0 5 1.11804315148986 1.19038712011567 1.19038712011567 1.11804315148986 4 - 185.8 0.9531466219938172 HCT116-unstranded 1.0 164213 GTCTTGAACTTGGTTTTAAACATAACGAAATTCAACATATGATCACCAGAATCCCAAAGATGTTAACTGCAAATAAAATGAAACTTACCGAGACGTTTGATTTTGTGCACAATGTGATGAGCATTCCCCACCACATCATTGTCAAGTTCCCACA|GTTTCAGCATCAGGCAAGTGGCTGGATGGTATTCGAAAATGGTATTACAATGCTGCAGGATTCAATAAACTGGGGTTAATGCGAGATGATACAATATACGAGGATGAAGATGTAAAAGAAGCCATAAGAAGACTTCCTGAGAACCTTTATAATGACAGGATGTTTCGCATTAAGAGGGCACTGGACCTGAACTTGAAGCATCAGATCTTGCCTAAAGAGCAGTGGACCAAATATG 3 0.8829982128336179 0.971786217823063 0.933744701444649 Y Y 3.2639799895234 3.56488607910057 3.2639799895234 0 0.0 0.0 Y 0.0 N Y 1056 12475 ENSG00000156469 ENSG00000156467 + - 8 8 97273838 97247862 coding coding MTERFD1 UQCRB 97251626 97238148 - - 0.0 97256147 97245455 - + N - - N SA468 3 0.0 2.0 1 4 1 N Y 0.0 0.0 5 0.940471592135588 1.34822850620836 1.34822850620836 0.940471592135588 4 - - 0.918272805187434 HCT116-unstranded 1.0 40545 AGAAGTCCTTCTGGACAGTGTGATGCCCCTGTCAGACGATGACCAGTTTTCACCGGAAGCAGATGCCGCCATGAGCGAGATGACGGGGAATACAGCACTGCTTGCTCAGGTGACAAGTTACAGTCCAACTGGTCTTCCTCTGATTCAGCTGTGGAGTGTGGTTGGAGATGAAACTGGCTTCAGCATTGTGCAGTTTAAAAATAA|GATTCAAAGTGCCTTGCAGTCTGAGAAAGAGCCAGAGAGACGTTCTCCTTGAGTCCTACTCTGCAACCAAGCCTTTCCGAGTGGCTGCTCTCTTGTATACTGGGGAAGGGAGGATGATGTTAACCAAAAGGACCCAGCAGCAGACATGAGGAGCAACAAAGCACAAGACAAGCACACAGAGCACAAGTTGCTGAAAAGGGCAC 11 0.7241719593500251 0.99653134937999 0.5704368789918179 Y Y 3.44768596531277 3.2216342342823 3.2216342342823 1 0.0 0.0 Y 0.0 N N 3104 4270 ENSG00000121057 ENSG00000153944 + - 17 17 55198710 55762046 coding upstream AKAP1 MSI2 55162453 55333212 + + 0.0 55198671 55282121 + - N - - N SA468 1 0.0 1.0 1 0 1 N Y 0.0 0.0 8 1.32192160852625 1.32849833294677 1.32849833294677 1.32192160852625 4 - - 0.9786704584200708 HCT116-unstranded 1.0 64661 CTGTATCAGTGGGCACAGGTAAAACCAAATAGTAACCAAGTTAATCTTGCCTCCTGCTGTGTGATGCCACCAGATTTGACTGCATTTGCTAAACAATTTGACATACAGCTGTTGACTCACAATGATCCAAAAG|CTCTGAAATGCACACTTAAACCCAGGCCCTTTGTCTCTGACCGCCCTGGCCTGAACTGGCTGGGCGGAGATTCTCGCGAATTCTCGGATCTGCGCGGAAAACGCGCTCGAGGCAGTTCTCTGACGCATTTCCGGAGCGCCAGGGAAGAGGGAAGTCGTGGTGGTCGCGAGGGAGCCGGAAAGATGGTGGTTACCAGATCTGCA 5 0.7700814800420551 0.8382555004175921 0.8961272436519889 Y Y 3.46910819465161 3.3828009725769 3.3828009725769 0 0.0 0.0 Y 0.0 N N 429 8205 ENSG00000023909 ENSG00000067334 + - 1 1 94374966 94345474 coding intron GCLM DNTTIP2 94350761 94333373 - - 0.0 94360170 94344886 - + N - - N SA468 1 0.0 1.0 1 0 1 N Y 0.0 0.0 5 0.7629000327813159 1.1246198759103898 1.1246198759103898 0.7629000327813159 4 - - 0.97364452002819 HCT116-unstranded 1.0 61785 ATTATCAGTTTAAGCGGCTGCAGGGCAAGAGGAACCGAGGGAGAGAAGAAATCAACTTTGTGGAGATCAAAGGTGATGACCAGCTCAGTGGGGCCCAGCAATGGATGACTAAGTCATTGACAGAAGAGAAAACCATGAAGTCATTCAGCAAAAAGAAAGGTGAGCAGCCAACAGGCCAGCAGCGGCGGAAACACCAGATCACATATCTTATTCATC|AGGCCGCCCTCATCTGCCTGGCACCCTCTGTACCCCCGATCTTGACGGTGAAGTCCTGGGACACCATGCAGTTGCGGGCTGCTAGATCTCGGTGCACAAACTTGTTGGCAGCAAGTCCCGGCCAGTGTGCAGCTGCACACGGCGGTGGAGATGCAC 6 1.0 0.809084038243046 0.663537075975776 Y Y 3.5210127405496205 3.34256120966892 3.34256120966892 0 0.0 0.0 Y 0.0 N Y 4915 69 ENSG00000143294 ENSG00000198400 + - 1 1 156770607 156851642 coding coding PRCC NTRK1 156720402 156785432 + + 0.0 156767133 156811873 + - N - - N SA468 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 6 1.3153448841057198 0.907587970032945 1.3153448841057198 0.907587970032945 4 - - 0.992702420612708 HCT116-unstranded 1.0 179406 CCTCATCCTGCCTATTGGACACTACCAGTCAGTGGTGGAGCTTTCAGCAGAGGTGGTAGAAGAGGTGGAGAAGTATAAGGCCACTCTGAGACGGTTCTTTAAGAGTCGAGGGAAATGGTGTGTTGTATTTGAGAGAAATTATAAGAGCCATCACCTCCAGCTACA|GGAACTTGATCTCAAAATAGCAATTAAGTCTTGTCGCCTAGAGCTAAGTACCAAAAACAGAGAACGATGGTGCCATGAAATCCAGATTATGAAGAAGTTGAACCATGCCAATGTTGTAAAGGCCTGTGATGTTCCTGAAGAATTGAATATTTTGATTCATGATGTGCCTCTTCTAGCAATGGAATACTGTTC 8 0.5778182113742121 0.708736719968352 0.471110502827697 Y Y 3.46654754157187 3.76848670091893 3.46654754157187 1 0.0 0.0 Y 0.0 N Y 1867 3370 ENSG00000095485 ENSG00000213341 + - 10 10 102027437 101989376 coding coding CWF19L1 CHUK 101992050 101948055 - - 0.0 101997779 101985774 - + N - - N SA468 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 6 1.05227590728457 1.14435004917197 1.14435004917197 1.05227590728457 4 - - 0.977339088123058 HCT116-unstranded 1.0 178744 GCAGTCGCAACCCATACTATTCGGACAGATGGCACAGAAACCGCTGCGCCTGGAGAAGTGGATACCAAAAAATGTGGTTCTGCTTTGGTTTCCAGTCTTGCCACGGGCTTGAAACCAAGATACCATTTTGCTGCTTTGGAAAAGACCTATTATGAGAGGCTTCCATATC|GGAACTTGATCTCAAAATAGCAATTAAGTCTTGTCGCCTAGAGCTAAGTACCAAAAACAGAGAACGATGGTGCCATGAAATCCAGATTATGAAGAAGTTGAACCATGCCAATGTTGTAAAGGCCTGTGATGTTCCTGAAGAATTGAATATTT 4 0.908504291222208 0.644117876706077 0.165560896815167 Y Y 3.58424216889964 3.76848670091893 3.58424216889964 0 0.0 0.0 Y 0.0 N Y 1867 3370 ENSG00000095485 ENSG00000213341 + - 10 10 102027437 101989376 coding coding CWF19L1 CHUK 101992050 101948055 - - 0.0 102013178 101985774 - + N - - N SA468 1 0.0 1.0 1 0 2 N Y 0.0 0.0 5 0.953625040976645 0.822090552566073 0.953625040976645 0.822090552566073 4 - - 0.982022975719199 HCT116-unstranded 1.0 164392 GAAGTCAATGTGCAAATGCTGATCAGTTTTACCTCTTTCAATGATGAATCAGGAGAAAATGCTGAGAAGCTTCTGCAGTTCAAGCGTTGGTTCTGGTCAATAGTAGAGAAGATGAGCATGACAGAACGACAAGATCTT|AGATCATCTTCAGACACCAACGAAAGTGAAATAAAGTCAAATGAAGAGCCACTCCTAAGAAAGAGTTCTCGCCGGTTTGTCATCTTTCCAATCCAGTACCCTGATATTTGGAAAATGTATAAACAGGCACAGGCTTCCTTCTGGACAGCAGAAGAGGTCGACTTATCAAAGGATCTCCCTCACTGGA 5 0.8090176950334641 0.85103689039296 0.7603878291294051 Y Y 3.4094724891512205 3.37295958784206 3.37295958784206 0 0.0 0.0 Y 0.0 N Y 3996 2282 ENSG00000104517 ENSG00000048392 + - 8 8 103425069 103251346 coding coding UBR5 RRM2B 103264501 103216730 - - 0.0 103269860 103244532 - + N - - N SA468 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 6 0.756323308360787 0.868127623509773 0.868127623509773 0.756323308360787 4 - - 0.983540303525414 HCT116-unstranded 1.0 117426 CCCCAAGCCAACGTCTCCGCCGTCGGCTCCGCGGCGCCGCCATGGCCGACGTGGAAGACGGAGAGGAAACCTGCGCCCTGGCCTCTCACTCCGGGAGCTCAGGCTCCAAGTCGGGAGGCGACAAGATGTTCTCCCTCAAGAAGTGGAACGCGGTGGCCATGTGGAGCTGGGACGTGGAGTGCGATACGTGCGCCATCTGCAGGGTCCAGGTGATGG|CACTTACCACCATCTGTGGTGGGTTGGAAAACATGGCCACAGTATTTTACAGCTACTCCTATCAACCTGGGCTAGGCTTGTGACCAGTAGAATGTGGCAGAAGTTAACGGTGTATCAGCTCCAGAGCCTGGAACTGAAGAGATCTTGCAGCTTCTGCCTTCACCCTTTTGGAAAACTGCTCTGA 21 0.929101394950226 0.7538511316534241 0.506413429382479 Y Y 3.60785432895764 3.46720988898117 3.46720988898117 0 0.0 0.0 Y 0.0 N N 1421 554 ENSG00000114125 ENSG00000114124 + - 3 3 141466402 141537332 coding upstream RNF7 GRK7 141457046 141496990 + + 0.0 141457358 141484271 + - N - - N SA468 1 0.7719298245614029 1.0 1 0 1 N Y 0.0 0.7719298245614029 13 1.44030264809576 1.1246198759103898 1.44030264809576 1.1246198759103898 4 - - 0.9878187532848772 HCT116-unstranded 1.0 148946 GCATTTCAGAGAAAAGGTCATGAGGTGGTTTTGGACTGTGGTTTCCAGTCTGACCCAGGAGGAGTTGGCTCGGCTACTTCAGTTCACAACAGGCTCCTCTCAGCTACCACCTGGAGGCTTTGCCGCCCTCTGTCCCTCATTTCAGATTATTGCCGCTCCGACCCATAGCACGCTGCCTACTGCACACACAT|GGAGGAACGTCTGCGGGGGACAGTGCTGCCCAGGATGGACAACAGCAAACAGCACCAACCACTGTATCAAACCCGTTTGCGAGCCGCCGTGCCAGAACCGGGGCTCCTGCAGCCGCCCGCAGCTCTGTGTCTGCCGCTCTGGTTTCCGTGGAGCCCGCTGCGAGGAGGTCATTCCCGATGAGGAATTTGACCCCCAGAACTCCAGGCTGGC 3 0.653356430839532 0.971786217823063 0.587821370476631 N Y 3.2707967128620803 3.40744620240479 3.2707967128620803 0 0.0 0.0 Y 0.0 N Y 2484 1799 ENSG00000119682 ENSG00000119681 + - 14 14 75179818 75079306 coding coding KIAA0317 LTBP2 75119880 74964873 - - 0.0 75130602 75070408 - + N - - N SA468 1 0.0 1.0 1 0 1 Y N 0.0 0.0 6 1.21669401779779 1.32192160852625 1.32192160852625 1.21669401779779 4 - - 0.97433342940569 HCT116-unstranded 1.0 162838 CCCAGCGGGAGCATGAGGAGTACCTGAAACTGAAGGAGGCCTTTGTGGTGGAGGAGGAAGGCGTAGGAGAGACCATGACTGAGGAACAGTCCCAGAGCTTCCTGACAGAGTTCATCAACTACATCAAGCAGTCCAAGGTTGTGCTCTTGGAAGACCTGGCTTCCCAGGTGGGCCTACGCACT|CAGTGCCCCCCTGGCTTAGTCATGGCGAAGCTGGAGACGCTGCCTGTGCGCGCTGACCCAGGGCGGGATCCTCTCCTGGCCTTTGCCCCACGGCCCTCCGAGCTTGGACCCCCGGACCCCCGCCTGGCCATGGGCAGCGTGGGCAGTGGGGTGGCCCATGCCCAGGAGTTTGCCATG 1 1.0 0.831868479817801 0.887452653838641 Y Y 3.58424216889964 3.66488952858494 3.58424216889964 0 0.0 0.0 Y 0.0 N Y 871 461 ENSG00000198171 ENSG00000088899 + - 20 20 3185331 3154192 coding utr5p DDRGK1 RP5-1187M17.10 3170996 3143263 - - 0.0 3172411 3147827 - + N - - N SA468 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 5 1.0128155607614 0.8418207258276591 1.0128155607614 0.8418207258276591 4 - - 0.9771859853587892 HCT116-unstranded 1.0 30705 ATAAGTTGAATAACTTATCACATTCTTTTTCTCATGGCAAGAATACTTTCTAGCTGGTGGGCCATGAGCTTTATTTACTCTGCTTCCAGGAATACCTTAGCTGTTATCAATAAGCAGTCCTTTCTCAAGTTTCCATCTAGTAC|CCTGGCATAACCAATGATAAGGCTGCCAAAGACTGTTCCAATACCAGCACCAGAACCAGCCACTCCTACTGTTGCAGCACCTGCACCAATAAATTTGGCAGCAGTATCAATGTCTCTGCTGATTGCACTGGTCTGAAACTCCCTTTGGATTAGCTGAGA 6 0.458453426116563 0.7762263398089799 0.825036889904618 Y Y 3.34040178417331 3.70719543103269 3.34040178417331 2 0.0 0.0 Y 0.0 N Y 885 11510 ENSG00000115966 ENSG00000154518 - + 2 2 176033110 176049335 utr5p intron ATF2 ATP5G3 175936978 176040986 - - 0.0 176015886 176043785 + - N - 0.781936846281856 N SA468 1 0.0 1.0 1 0 1 N Y 0.0 0.0 6 0.7497465839402591 0.69713278857603 0.7497465839402591 0.69713278857603 4 - 763 0.967623464346534 HCT116-unstranded 1.0 114507 GCAGCAACAGCAACAGCAGCAGCAGCAACAGCAACAACAGCAACACCAGCAGCAACAGCAGCAACAGGCGGCTCCTCCCCAACCCCAGCCCCAGTCCCAGCCCCAGTTCCAGCGCCAGGGGCTTCAGCAGACCCAGCAGCAGCAACAGACAGCAGCTTTGGTCCGGCAACTTCAACAACAGCTCTCTA|GCCTGTCTGGCCCTGAGGGAGTCCCCTTTCTGAAGCTGTGGTGCTTGGACGACCTGCTCTCTACATTGCTGGGCACCTGTAGGTGTCCCTCGAGAGCTCAGTTTTGAGGTTCAAGTCAGTGTGGCCATGAAGGGGCTGCCTATTGGGCTGATGCTGTGACCCTGGAGTCTGCCTCTCCTGCCAGTCCCC 3 0.876422557878221 0.595766785557903 0.0359147402541986 Y Y 3.49272035470961 3.08192538822327 3.08192538822327 1 0.994694922886412 0.0 Y 0.00264550264550267 N Y 1194 172 ENSG00000184634 ENSG00000196338 + - X X 70362303 70391051 coding utr5p MED12 NLGN3 70338406 70364681 + + 0.0 70361814 70367400 + - N - 0.130522697401678 N SA468 1 0.398809523809524 1.0 1 0 1 N Y 0.398809523809524 0.0 5 1.02596900960246 0.914164694453473 1.02596900960246 0.914164694453473 4 - 0 0.963851973696224 HCT116-unstranded 1.0 104055 CCTGACCCACTGGGTCCCAGGTCCCAGCCCGCATGCCAGGTGGCCCACGACCCCCCCAGAGCCTGCCCTCTCTGCTCTCAAGGCACCAAGACGCTGAGTGGCAGCATAGCCCCAATGGACGTCTGTGTCCGGCACTTCCTGCAGGCCACA|GTATGACGCCGTGCCCATCCAGTCCAGCGTGGTGTTATGTTCCTGCCCATCCCCATCAATGGTGAGGACCCAGACTGAGTCCAGCACGCCCCCTGGCATTCCTGGTGGCAGCAGGCAGGGCCCCGCCATGGACGGCACTGCAGCCGAGCCTCGGCCCGGCGCCGGCTCCCTGCAGCATGCCCAGCCTCC 10 0.7668823418070569 0.637480356548481 0.42786214142794 N Y 3.65913638023969 3.50165665075055 3.50165665075055 0 0.0 0.0 Y 0.0 N Y 730 4487 ENSG00000162066 ENSG00000140992 + - 16 16 2581423 2653189 coding coding AMDHD2 PDPK1 2570358 2587965 + + 0.0 2578719 2607704 + - N - - N SA468 2 0.0 2.0 2 6 1 N N 0.0 0.0 6 1.07200608054616 1.1706569468540902 1.1706569468540902 1.07200608054616 4 - - 0.913471100117605 HCT116-unstranded 1.0 109294 CAGCCCCTGAACCAAGATCCTGAACAAGAGGAGGTGGAACTGGCACCAGTGGGGGATGGAGATGTAGTTGCTGACATCCAGGATCGAATCCAGGCCCTGGGGCTTCATTTGCCAGACCCACCATTAGAGAGTGAAGATGAAGATGAGGAGGGAGCTACAGCGTTGAACAACCACAGCTCTATTCCCATGGACCCAG|GAATGTATAATGTACAAAATAGAAGACTGCCTCAAGAAGAAAGGAGAGATGGAGAAAGCTGAGCAGTAGCTGAAAGAGAATGTAAGGTCTAGAAAATGGAGATTGGCACCATCCAATTCATTTATTGTAAGTGAAAATAATTGTTAATAATTGGAAATGCAGTGGGACATGATGGCTTATGCCTGTAGTC 5 0.850722203505539 0.41889204623287 0.424721402576118 Y Y 3.66488952858494 3.4058787663015897 3.4058787663015897 7 0.994750441996464 0.0235822113423093 Y 0.92125662994696 N N 2065 766 ENSG00000124733 ENSG00000124587 + - 6 6 42981706 42946958 coding upstream MEA1 PEX6 42979832 42931608 - - 0.0 42980664 42948581 - + N - - N SA468 1 0.146067415730337 1.0 1 0 1 N Y 0.0 0.146067415730337 5 1.11146642706933 0.8418207258276591 1.11146642706933 0.8418207258276591 4 - - 0.945702955551973 HCT116-unstranded 1.0 118691 ATCTCGTTCAAGAAACACTTTTTCATGATCCATGGAAGCTTCTCATCGCTACTATATTTCTCAATCGGACCTCAGGCAAAATGGCAATACCTGTGCTTTGGAAGTTTCTGGAGAAGTATCCTTCAGCTGAGGTAGCAAGAACCGCAGACTGGAGAGATGTGTCAGAACTTCTTAAACCTCTTGGTCTCTACGATCTTCGGGCAAAAACCATTGTCAAGTTCTCAG|GTTCTGTAACTCCAAACCATGGCACCCTGCCATAAGCGGGGCAGAACATACCCAACACCTCTATCTGGCCACAGCTCACTTTGGTTCTTCCTAACCCTCTGGAGGAGGCAGGGCCTATTTTTCCTATGAGAAAACTGAGGCCTAGAGATATGGAGACCTGCGGAAGATCCCACATTTCACGGGAAAACCGGAGACTTTCTACACTG 23 0.8817919637157929 0.625002382313894 0.38160167904968895 Y Y 3.57063922744582 3.6025651889288097 3.57063922744582 8 0.995156868033082 0.0 Y 0.0 N N 386 388 ENSG00000129071 ENSG00000172771 + - 3 3 129158878 129147494 coding upstream MBD4 EFCAB12 129149787 129120164 - - 0.0 129151941 129147883 - + N - - N SA468 1 0.48780487804878 1.0 1 0 1 N Y 0.0 0.48780487804878 33 1.49949316788052 1.34822850620836 1.49949316788052 1.34822850620836 4 - - 0.91675852866195 HCT116-unstranded 1.0 109894 GAGAGATTTCACCTCTTCTGGGAGCAGGAAACTCTACTTCGACACTCATGCCTTAGTGTGCTTACTGGAAGACAATGGGTTTGCTACTCAACAAGCAGAAATCATTGTGTCTGCATTGGTCAAGATCCTGGAGGCCAACATGGACATCGTCTACAAAGATATGGTCACCAAGATGCAGCAGGAAATCACTTTTCAGCAAGTAATGTCTCAGATTGCGAATGTGAAAAAGGATATGATTATTTTGGAGAAGAGTGAATTTTCAGCCCTCAGAGCAGAAAATGAGAAAATAAAACTCGAACTACATCAGTTAAAACAACAAGTAATG|TTCTTGAAACCAATGCCCTATGGATGGATACGGAGGCGACAACTGTTAATCATCTCACCACTCTGCATTAGTCCAGTCTCACATTGCTAATAAAGACATTTCTGAGACTGGGTAATTCATAAACAAAAGAGGTT 7 1.7832362138170998e-05 0.541243492334845 0.670891363877671 Y Y 3.24784690021339 3.62039369541802 3.24784690021339 0 0.0 0.0 Y 0.0 N N 1019 1424 ENSG00000050393 ENSG00000010017 + - 6 6 13814800 13711796 coding upstream CCDC90A RANBP9 13791020 13621730 - - 0.0 13800573 13718751 - + N - - N SA468 1 0.462962962962963 1.0 1 0 1 N Y 0.0 0.462962962962963 7 1.07858280496669 0.7102862374170871 1.07858280496669 0.7102862374170871 4 - - 0.928642587936112 HCT116-unstranded 1.0 193572 CTGACTCTTACAAATCCAGTTGAGAACCTCACCCATGTGACTCTCTTCGAGTGTGAGGAGGGGGACCCTGATGATATCAACAGCACTGCTAAGGTGGTGGTGCCTCCCAAAGAGCTCGTTTTAGCTGGCAAGGATGCAGCAGCAGAGTACGATGAGTTGGCAGAACCTCAAGACTTTCAGGACGATCCTGA|GCAAAAACTCGAAGGAAGCATCCAGGTGCATTATACCAGGACCCCAATTGTTAAGCTTAGAAATTCCAAGAGCGGGCGACGTCATGACGCAAAGGCCCCGCCCCGGAAGAAGCCCTAGACGCGTAAATAAGACGCCGACCGGCGCGGCGCTA 2 0.973743291540638 0.308227766910921 0.525564384340962 Y Y 3.68105312311849 3.684245618384 3.68105312311849 1 0.0 0.0 Y 0.0 N N 7883 8394 ENSG00000132912 ENSG00000086589 + - 5 5 150138671 150080669 coding upstream DCTN4 RBM22 150088002 150070356 - - 0.0 150095127 150080775 - + N - - N SA468 1 0.0 1.0 1 0 1 N Y 0.0 0.0 5 0.88128107235083 0.526137953642287 0.88128107235083 0.526137953642287 4 - - 0.971613328407366 HCT116-unstranded 1.0 17613 ACACATTGGGTCACGCCATTACTGGGGGCTTCAGTGGAGGAAGTAATGCTGAGCCTGCGAGGCCTGACATCACTTACCAGGAGCCTCAGGGAACCCAGCCAGCACAGCAGCAGCAGCCTTGCCTCTATGAGATCAAACAGTTTCTGGAGTGTGCCCAGAACCAGGGTGACATCAAGCTCTGTGAGGGTTTCAATGAGGTGCTGAAACAGTGCCGACTTGCAAACG|AGCCACCCAGAGTTCCCTCACTGAAGATCTGAGCATGACCCGGGACGAGGCACTGCCGGACTCTCATTCTGCACAGGACTTCTATGAGAATTATGAGCCCAAAGAGATCCTGGGCAGGGGCGTTAGCAGTGTGGTCAGGCGATGCATCCACAAGCCCACGAGCCAGGAGTACGCCGTGAAGGTCA 64 1.0 0.965386713712152 0.459066043728341 N Y 3.5932183177339305 3.41848849077886 3.41848849077886 0 0.994607746432564 0.0 Y 0.0 N Y 15637 523 ENSG00000106153 ENSG00000164776 + - 7 7 56174269 56160689 coding utr5p CHCHD2 PHKG1 56169262 56148440 - - 0.0 56170560 56156668 - + N - - N SA468 6 0.0 3.1481481481481497 1 38 1 N N 0.0 0.0 54 1.4731862701984 1.2364241910593703 1.4731862701984 1.2364241910593703 4 - - 0.903049457303935 HCT116-unstranded 1.0 168050 GAATTGTTTACCTTTATACCAAGAAGGTTGGGAAAGCACCAAAATCTGCATGTGGTGTGTGCCCAGGCAGACTTCGAGGGGTTCGTGCTGTAAGACCTAAAGTTCTTATGAGATTGTCCAAAACAAAGAAACATGTCAGCAGGGCCTATGGTGGTTCCATGTGTGCTAAATGTGTTCGTGAC|AGGAATAATTTATGATGTTATTGTTGAACCTCCAAGTGTCGGTTCTATGACTGATGAACATGGGCATCAGAGGCCAGTAGCTTTCTTGGCCTACAGAGTAAATGGACAATATATTATGGAAGGACTTGCATCCAGCTTCCTATTTACAATGGGAGGTTTAGGTTTCATAATCCTGGACCGATCGAATGCAC 24 1.0 0.71007869974654 0.6724975364767329 Y Y 3.47907756046244 3.54144175291192 3.47907756046244 4 0.0 0.0 Y 0.0 N Y 15628 2570 ENSG00000109475 ENSG00000198856 + - 4 4 109551568 109588976 coding coding RPL34 OSTC 109541722 109571740 + + 0.0 109543774 109576720 + - N - - N SA468 49 0.0 25.964285714285694 2 28 3 N Y 0.0 0.0 28 1.2890379864236 1.2430009154799 1.2890379864236 1.2430009154799 4 - - 0.910165417967409 HCT116-unstranded 1.0 110958 ATTCCCCTGGGGGAGCCGGCAGCCTTCCGGAGTCACAGGTGGAGGCCCTGCACGTTTCAGAGAAAATCCCCTGTAGCCTCTCCGTGCCTTCGAGACGGCGGGAAAGGCACCGCCAGTAGATGCAGCTCTGCGGCCCCGGACACATCCTGCTTCACAGAGAAAAGCGGGCTGGAG|CTGCGCAGTCAGGCCCTGCTCCTCGTCGTCCTGGCCGCTCAGGACTCGCCGCAGCTTCTCCATGGCCCTGTTACAGGGCCGTAGCGGCCGCCACTCTGTTGCCTGCCCCTGACGCCCACCAGGAAACCCCGAACCCGAAACCCCACAGACCAGCCG 4 0.716825906930605 0.576714564325533 0.165560896815167 Y Y 3.51935717616377 3.14887652049892 3.14887652049892 0 0.0 0.0 Y 0.0 N N 145 1047 ENSG00000176381 ENSG00000198818 - + 6 6 166721936 166756079 upstream coding PRR18 SFT2D1 166719168 166733216 - - 0.0 166722311 166755907 + - N - 0.345244309411533 N SA468 1 0.0 1.0 1 0 1 N Y 0.0 0.0 9 0.8944345211918872 0.822090552566073 0.8944345211918872 0.822090552566073 4 - 36.4444444444444 0.965081533289754 HCT116-unstranded 1.0 110408 GGGCTGGTTATCATGGCCCTGAGCAACAAGGAGTCCCACGTGCCTTACCGGAACAGCAAACTGACCTACCTGCTGCAGAACTCTCTGGGTGGTAGTGCTAAGATGCTCATGTTTGTGAACATTTCTCCACTGGAAGAGAACGTCTCCGAGTCCCTCAACTCTCTACGCTTTGCCTCCA|AGGCCCCCCCAGGATGCAATGGCGCAGCCCCCCCGGCTGAGCCGCTCTGGTGCCTCCTCACTTTGGGACCCAGCTTCTCCTGCTCCCACCTCTGGCCCCAGGCCTCGGCTTTGGGAGGGTCAAGATGTGCTGGCCAGATGGACTGATGGGCTGCTATACTTG 5 1.0 0.584335837822079 0.358525387875455 Y Y 3.3524907226864 2.95215540275154 2.95215540275154 0 0.0 0.0 Y 0.0 N Y 7239 858 ENSG00000237649 ENSG00000112511 + - 6 6 33377701 33384230 coding utr5p KIFC1 PHF1 33359313 33378176 + + 0.0 33374652 33380025 + - N - - N SA468 1 0.0 1.0 1 0 1 N Y 0.0 0.0 5 0.993085387499816 0.97335521423823 0.993085387499816 0.97335521423823 4 - - 0.973767431909087 HCT116-unstranded 1.0 186434 ACAAGCAGCCGGAGCAGGCCACCACCAGTGCTCAGGTGGCCTGTTTGTACCGGAAGCAAAGTCAGATTCAGAACCAACAAGGCGAGGACTCAGGCTCTGACCCTGAAGATACCTACTAAGCCCTCGCCCTCCTAGGGCCTGGGTACAGGGCATGAGTTGGACGGACCCCAGG|AAGGGTGACATCACTAAGGAAGCCTGGAAAGTCCCAGCCCTCCACGTGATCCCACGGATGAAAATAGCTCCGGGTGAGCTCTGGAACAGCTGAAAAAGCTGGAGCAACCAAGCAGGGCCTACAAGCCGAGGAGGGCTGTTTAAAGGCGCAGGG 5 1.0 0.236436187575184 0.465618054419299 Y Y 3.3770478242316497 3.4451253122330296 3.3770478242316497 0 0.0 0.0 Y 0.0 N N 4955 213 ENSG00000105486 ENSG00000105499 + - 19 19 48673601 48614109 utr3p upstream LIG1 PLA2G4C 48618703 48551100 - - 0.0 48618853 48614161 - + N - - N SA468 1 0.0 1.0 1 0 2 N Y 0.0 0.0 5 0.69713278857603 0.7497465839402591 0.7497465839402591 0.69713278857603 4 - - 0.97575848436489 HCT116-unstranded 1.0 125745 ACGACAGCCACATGCCCCATTCAGGGAGCCCCAGACTCTGGTAAATGCTCTGCTTCCTCCTGCCTGGATACTTCTAATGACCCTGACGACCTGGACGTGCTCAGAACCCGGCATGCCAGGCACACCCGGAAGCGGAGGCGGCTGGTGTGAGCAG|CAGCCTGCCTGCTGAGGCCATGTCGGACTACGAGAACGATGACGAGTGCTGGAGCGTCCTGGAGGGCTTCCGGGTGACGCTCACCTCGGTCATCGACCCCTCACGCATCACACCTTACCTGCGGCAGTGCAAGGTCCTGAACCCCGATGATGAGGAGCAGGTGCTCAGCGACCCCAACCTGGTCATCCGCAAACGGAAAGTGGGTCAGTGTTGCCCCGCGGGCCCCAGGCCCCAAACCCAA 7 1.0 0.76721456227686 0.4626182333835779 Y Y 3.33208798274832 3.7308075910906897 3.33208798274832 0 0.0 0.0 Y 0.0 N Y 4575 217 ENSG00000165684 ENSG00000187796 + - 9 9 139293249 139268133 utr3p intron SNAPC4 CARD9 139270029 139256355 - - 0.0 139270801 139266546 - + N - 1.75106660679539 N SA468 1 0.0 1.0 1 0 1 N Y 0.0 0.0 12 1.00623883634087 1.2430009154799 1.2430009154799 1.00623883634087 4 - 0.583333333333333 0.986282242357751 HCT116-unstranded 1.0 104052 ATGCAGTTGGAGGTGGGGAGGGGAAGGAAATAGTTATCAAATAATGCAAAATGGAATAAAGTTATCTTGGATGGAAAGAACAGGGCTAAATCTGGTCCTCTGGTGTCGAGATGGAAAACTGTGGAGTTGAAGAGGCTCTGATGCCCAGAAAGGACAATCAAGCTGGTTGACTCTTCCAGAGAAGAAGG|ATGCCGGTGCAGCTGACGACAGCCCTGCGTGTGGTGGGCACCAGCCTGTTTGCCCTGGCAGTGCTGGGTGGCATCCTGGCAGCCTATGTGACGGGCTACCAGTTCATCCACACGGAAAAGCACTACCTGTCCTTCGGCCTGTACGGCGCCATCC 3 0.6548385031481939 0.6798908440707299 0.252760535820949 Y Y 3.51529944499772 3.28548615724827 3.28548615724827 0 0.0 0.0 Y 0.0 N N 456 1259 ENSG00000103047 ENSG00000103044 + - 16 16 69119083 69152622 utr3p coding TMCO7 HAS3 68877507 69139467 + + 0.0 69118228 69143299 + - N - - N SA468 1 0.0 1.0 1 0 1 N Y 0.0 0.0 6 1.16408022243356 1.00623883634087 1.16408022243356 1.00623883634087 4 - - 0.941318916062761 HCT116-unstranded 1.0 118986 CAGCATGGCCAGAACCCTCAACAGGCACACCAGCACTCAGGAGGACCTGGCCTGGCCCCACTTGGAGCAGCAGGGCACCCTGGCATGATGCCTCATCAACAGCCCCCTCCCTACCCTCTGATGCACCACCAGATGCCACCACCTCATCCACCCCAGCCA|GCGCGTGAGGCGGGCAGCGCGGTTGAGGCCGAAGAGCTGGTGAAGGGCAGCCCGGCGTGGGAGCCGCCTGCCAACGACACGCGGGAAGAAGCCGGCCCACCAGCGGCTGGGGAAGATGAGGCGTCGTGGACGGCGCCCGGTGGCGAGCTGGCCGGGCCAGAAGAGGTGCTGC 9 0.8356449525014509 0.745989106296567 0.795299597677691 Y Y 2.94018509774462 3.1631113041385 2.94018509774462 1 0.0 0.0 Y 0.0 N Y 11643 434 ENSG00000173473 ENSG00000114646 + - 3 3 47823596 47622282 coding coding SMARCC1 CSPG5 47626762 47603729 - - 0.0 47651556 47619418 - + N - - N SA468 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 6 0.854974174668716 0.9996621119203448 0.9996621119203448 0.854974174668716 4 - - 0.9698088381156508 HCT116-unstranded 1.0 119213 CTCAGCTGATGACATTGCCCAAAACCTTACAGCAACAGATAAATCATATTATGGACCCTCCTGGAAAAAACAGAGATGTGGAAGAAACTTTATTCCAAGTGGCTCATGATCCCGACTGTGGAGATGTGGTGCGACTAGG|CTCCAACCAGGAATGGAGACGCCATTGGATGTTTTGTCCAGGGCAGCATCTCTGGTGCATGCTGATGACGAAAAACGCGAAGCTGCTCTCAGGGGAGAACCCAGAATACAGACCCTGCCGGTGGCCTCTGCCCTCAGCAGTCACCGCACCGGCCCTCCCCCAATCAGCCCCAGCAA 1 0.9276974232335328 0.981179181569306 0.945342627487881 Y Y 3.5210127405496205 3.70719543103269 3.5210127405496205 0 0.0 0.0 Y 0.0 N Y 197 1414 ENSG00000144559 ENSG00000144560 + - 3 3 11888393 11762220 coding utr5p TAMM41 VGLL4 11831916 11597544 - - 0.0 11850991 11744521 - + N - - N SA468 1 0.0 1.0 1 0 1 N Y 0.0 0.0 5 0.920741418874002 0.887857796771359 0.920741418874002 0.887857796771359 4 - - 0.9771859853587892 HCT116-unstranded 1.0 29198 TGTCACCAAAGCCAGGCCCTTGGGGTGTCTGCAGGGACGAGAGGAGGGCAGGCAGGGGAACCTGAGGTGGGGACCTCTGGCTTGAACATCACTTTGTCCCCAAGCAGCTGGTGGACTTGAAGCTGACAGTGGATGGGCTGGAGAAGGAACGTGACTTCTACTTCAGCAAACTTCGTGACATCGAGCTCAT|CAAGTCTCTCAATGCCGTGGCCTTCACATCGACGCTCAATGAACGTTCTCAGAAGGGAATCTCCTCTCCTCCCGGCCTCTTCGCCTGGGCGGGGGCCGCAGGCTGCCGCGGAAGCCTCTTCCCGATGCTCTTCGCTCAGGAGAGCCCGGCCCAGGAGAGGG 2 1.0 0.279830341839632 0.474435615659038 Y Y 3.59272380419397 3.69209541149257 3.59272380419397 0 0.0 0.0 Y 0.0 N N 263 2620 ENSG00000084764 ENSG00000119777 + - 2 2 27250064 27264563 coding upstream MAPRE3 TMEM214 27193480 27255778 + + 0.0 27248830 27255586 + - N 0.578023254374337 - N SA468 1 0.0 1.0 1 0 1 N Y 0.0 0.0 6 1.09173625380775 0.618212095529687 1.09173625380775 0.618212095529687 4 8 - 0.970546915892098 HCT116-unstranded 1.0 164643 TGAGGAAGTTGGGCCTCATGGACAATGAGATAAAGGTGGCTAAAGCTGAGGCAGCGGGCCACAGGGACACCTTGTACACGATGCTGATAAAGTGGGTCAACAAAACCGGGCGAGATGCCTCTGTCCACACCCTGCTGGATGCCTTGGAGACGCTGGGAGAGAGACTTGCCAAGCAGAAGATTGAGGACCACTTGTTGAGCTCTGGAAAGTTCATGTATCTAGAAG|CCTTACCTCCCGGGTGGAGCTCTCCACAAATGGCCCCCCAAACATGGCAGCCATCCAGTCACAGCTGGAAATCAACAGGGGCTTGTGGGCGCTGATGGTGCCATCATCCAGGATGAAGGTCACATCTGTCCAGAAGAAGCATCACAGGAGGACTGGTGAAAGAAGCTGGGAGAACAAGCCCCAAGGGGAGCCACGG 27 0.881399501358479 0.8922822504917242 0.848404027101641 Y Y 3.70719543103269 3.37916739693392 3.37916739693392 1 0.0 0.0 Y 0.0 N N 5259 322 ENSG00000120889 ENSG00000245025 + - 8 8 22926692 22876848 coding intron TNFRSF10B RP11-875O11.1 22877646 22842109 - - 0.0 22880210 22865630 - + N - - N SA468 1 0.0 1.0 1 0 1 N Y 0.0 0.0 22 1.41399575041365 1.30219143526466 1.41399575041365 1.30219143526466 4 - - 0.9693922384235568 HCT116-unstranded 1.0 118575 CTGCCCCATGTCTGTTGCTGCAAACAAGATGCTCTCATCCTCCAGCGTGGCCTTCATCATGAAGACGGCAGCCAGCACATCGGCCTCCTGCATCCTGGGGACAGAGGGCCTGACCATGAGTACGTGCTGGTCGAGGAAGCGGAGTGTGCCATGAGCGAGAGGGAGGCTGCCCCAAATGAGGAA|GTATTTTATGCATGGTGTGTGTCGGGAAGGAAGTCAGTGCCTATTCTCACATGACTTGGCAAACAGCAAACCGTCCACCATCTGCAAGTACTACCAGAAGGGCTACTGTGCCTATGGAACTCGGTGCAGATATGACCACACGAGGCCCTCTGCTGCAGCTGGAGGTGCTGTGGG 4 0.745550064527547 0.657980668063838 0.5643376757752641 Y Y 3.23168330567983 3.3880502598123803 3.23168330567983 0 0.0 0.0 Y 0.0 N Y 233 1455 ENSG00000154743 ENSG00000075975 + - 3 3 12581122 12625212 coding coding TSEN2 MKRN2 12525931 12598513 + + 0.0 12545283 12610374 + - N - - N SA468 1 0.0 1.0 1 0 1 N Y 0.0 0.0 5 0.966778489817702 1.09173625380775 1.09173625380775 0.966778489817702 4 - - 0.977810907349288 HCT116-unstranded 1.0 187478 GTTGTGGACTGCAAGAAGGAAGCCTTCCGCCTGCAGCCCTATAACGGCGTTGCCCTGCGGCCCTGGGACGGCAACTCTGATGACCGGGTCTTGTTGGATCTGTCTGCCTTCCTCAAGACCATTGCACTGAATGGTGTGGAGGACGTGCGAACCGTGCTGGAGCACTATGCCCTGGAGGATGACCCGCTGGCGGCTTTCAAACAGCGGCAAAGCCGGCTAGAGCAG|ACACGGCCCGCTGGCGTCTTCGAGCTGCAGATCCACTCTTTCGGGCCGGGTCCAGGCCCTGGGGCCCCGCGGTCCCCCTGCAGCGCCCGGCTCCCCTGCCGCCTCTTCTTCAGAGTCTGCCTGAAGCCTGGGCTCTCAGAGGAGGCCGCCGAGTCCCCGTGCGCCCTGGGCGCGGCGCTGAGT 5 0.9298724119648292 0.863857535924667 0.308373643433114 Y Y 3.2603862666737697 3.59272380419397 3.2603862666737697 0 0.0 0.0 Y 0.0 N Y 3165 398 ENSG00000105197 ENSG00000090932 + - 19 19 39981528 39999118 coding coding TIMM50 DLL3 39971052 39989557 + + 0.0 39979285 39989832 + - N - - N SA468 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 7 1.3350750573673 1.19038712011567 1.3350750573673 1.19038712011567 4 - - 0.9815707654864108 HCT116-unstranded 1.0 126316 AAACAATGCATCTCCAGGTGCGTGTGCCATGGAGACTTGGGGGCCTGAAGGCAGCCCTGGGCAGCCTCCTCCAGCCTCCCCTCCACCTCAGAATCTGCCTCTTCCAGGGACAGTGAGCTTCTTCTCTCCTTGTTAATCCAAACAGCATTGACCATCGATTCTGCAGGAGCAGGTGTGTTTCCT|CCTTGCTCTCGATCTGCTTCACCATCTTGGCTGCTGGAGTCTGACGAGCGGCTGTAAGGACCGATGGAAATGGATCCAAAGCACCAAACAGAGCTTCAAGACTCGCTGCTTGCTCTCTCCCTTTATAAACTGGCACGCCCGGCGTGCGTGTGGCGGGGGCGCGCGCGCCCGGCCGGAC 8 1.0 0.6184311477619481 0.650451599223306 Y Y 3.6491271616355 3.4911927713997595 3.4911927713997595 0 0.0 0.00276243093922657 Y 0.00276243093922657 N Y 670 10125 ENSG00000188959 ENSG00000136810 - + 9 9 112970469 113018920 coding intron C9orf152 TXN 112952328 113006091 - - 0.0 112963754 113018692 + - N - 0.552256613528572 N SA468 1 0.15606936416185002 1.0 1 0 2 N Y 0.0 0.15606936416185002 14 0.966778489817702 1.1246198759103898 1.1246198759103898 0.966778489817702 4 - 503.357142857143 0.988649060200205 HCT116-unstranded 1.0 17829 CAGACCTCTTTCCTCAGTAATGTCTGCGGGCTGTCCATCGGGCTGGCCTATGGCCTCACCTACTGCTATTCCATCGACCTCTCAGAGCGAGTGGCACTGAAGCTCGATCAGACCTTCCCCTTCAGCCTGATGAGGAGGATATCCGTGTTCAAGTACGTCTCAGGGTCTTCAGCCGAGAGGAGGGCAGCCCAGAGCCGGAA|TTTCATGATCAACATGGGAGACTCCCACGTGGACACCAGCTCCACCGTGTCCGAGGCGGTGGCCGAAGAAGTATCTCTTTTCAGCATGACGGACATGATTCTGTTTTCGCTCATCGTGGGTCTCCTAACCTACTGGTTCCTCTTCAGAAAGAAAAAAGA 8 1.0 0.8651698394900699 0.676889600461144 Y Y 3.1258962026266803 3.45872825368684 3.1258962026266803 1 0.0 0.0 Y 0.0 N Y 4593 3916 ENSG00000005486 ENSG00000127948 + - 7 7 75518244 75616173 coding utr5p RHBDD2 POR 75471920 75528518 + + 0.0 75513166 75583307 + - N - - N SA468 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 8 1.26273108874149 1.03254573402299 1.26273108874149 1.03254573402299 4 - - 0.985508981332429 HCT116-unstranded 1.0 167546 AATTCATTGCTTGCAATGAAATATTCCTGATGCCTGCGACAGTTTTTATGCTTTTTAG|AATAGAGAGGATAAAAAGTAGCAACACTTCCGCTTGCACCCGGACGGAACTTCCTGTCACGGAAAAGAACATCCTGTCACGGAGAAGAACATCCTGCAGAATTTCCTGTCACGAGGAACATTCCGCAGGAG 4 3.82563565798375e-10 0.550715976263844 0.93296981500604 Y Y 3.3802403194971604 3.69681549006792 3.3802403194971604 0 0.0 0.0 Y 0.0 N N 2783 4480 ENSG00000109133 ENSG00000182308 + - 4 4 41962589 41988476 coding upstream TMEM33 DCAF4L1 41937137 41983713 + + 0.0 41946943 41983676 + - N - - N SA468 1 0.0737704918032787 1.0 1 0 4 N Y 0.0 0.0737704918032787 7 0.966778489817702 0.8023603793044871 0.966778489817702 0.8023603793044871 4 - - 0.901855418249576 HCT116-unstranded 1.0 63170 GATCTATCAGGAAAACTCTCTTCAGATGCTTGTGGTAGACAAGTGCAGCATGGACCCGAGAGCAAGACTGGTGGTCAATGGTAAAGTCACACAAATCAGGGTTTCTCCCAAATAAGTAATACTTCTTCTCATCAATAATCAGTTTCTCAATTAGTTTGTCTCCTTTGACTACATCCAGATGTAAACCGGGAGGGGGCTTACCTGC|CCTGATAGTAAGCAGCTCGCTGTAACTGTTCAGTGGCTCTTTCGACGTGCACCTCTGAGCTTTCCACATTGGCTTCTATGCTATCTGCAAAAGGAAGGACAGAGGATGTTTTAACACACTCAGATGTTTTAAGACTGCAAATTGAACAGATTTCTGATGTTACATGTCCT 3 0.598272968848943 0.44351036237549496 0.805961393315513 N Y 3.60153211915892 3.7207983724865095 3.60153211915892 2 0.0 0.008526282853566821 Y 0.008526282853566821 N Y 1501 357 ENSG00000117751 ENSG00000117758 - + 1 1 28178187 28150963 coding intron PPP1R8 STX12 28157289 28099694 + + 0.0 28159267 28146243 - + N - 0.608474605292977 N SA468 2 0.0 1.14285714285714 1 1 1 Y N 0.0 0.0 7 1.1246198759103898 1.01939228518193 1.1246198759103898 1.01939228518193 4 - 5 0.953567615456311 HCT116-unstranded 1.0 178614 CGCCTCGTCGCCGGGTGCCGGTATCACCCCGCTGCAACGCCTTCCAGCAAAAGCCACCGCGGCCCGGGTTGCAGCAGCCGGACGGATGCCAAGGCCACACGGCAGCCACGGGGGCAGCCGTCGCAGTCGCCGTCCCACACGGGCTGCGGACACCAAGGGTTGCTA|GTTCTTACGTCTGTTGCTAGATTATCGTCCAAAAGTGTTAATGCCCAAGTGACTGACATCAACTCCAAGGGATTGGAATTGAGGAAGACTGTTACTACAGTTGAGACTCAGAACTTGGAAGGCCTGCATCATGATGGCCAATTCTGCCATAAGCCCTGTCCTCCAGATGTGAACATGGAATCATCAAGGAATGCACACTCACCAGCAACACCAAGT 9 0.939160291086815 0.8170220531797651 0.801487691779729 Y Y 3.53871326596283 3.59528445727371 3.53871326596283 0 0.0 0.0 Y 0.0 N Y 1108 1075 ENSG00000138134 ENSG00000026103 + - 10 10 90734910 90775542 utr5p coding STAMBPL1 FAS 90639491 90750414 + + 0.0 90640395 90762786 + - N - - N SA468 1 0.0 1.0 1 0 1 N Y 0.0 0.0 15 1.0128155607614 1.4205724748341702 1.4205724748341702 1.0128155607614 4 - - 0.980563534372732 HCT116-unstranded CGHSA0014 1.0 129934 AGCTTCAGAGCCTCCAGTGCCTGTGGGGCTGGAGGTGAAGTTGGGGGCCCTGGTGCTGCTGCTGGTGCTCACCCTCCTCTGCAGCCTGGTGCCCATCTGTGTGCTGCGCCGGCCAGGAGCTAACCATGAAGGCTCAGCTTCCCGCCAGAAAGCCCTGAGCCTAGTAAGCTGTTTCGCGGGGGGCGTCTTTTTGGCCACTTGTCTCCTGGACCTGCTGCCTGACTACCTGGCTGCCATAGATGAGGCCCTGGCAGCCTTGCACGTGAC|GGGCGTCCCCCTGGATACCAGTAAACTGTCCACTGACCAGCGGTTACCCCCATACCCATACAGCTCCCCAAGTCTGGTTCTGCCTACCCAGCCCCACACCCCAAAGTCTCTACAGCAGCCAGGGCTGCCCTCTCAGTCTTGTTCAGTG 4 0.23686709510689705 0.630161928883161 0.467754409020463 Y Y 3.5204207511572005 3.4964073635150803 3.4964073635150803 1 0.993259485446986 0.0 Y 0.0 N Y 2865 1472 ENSG00000143570 ENSG00000160741 + - 1 1 153940188 153931101 coding coding SLC39A1 CRTC2 153931575 153920145 - - 0.0 153934696 153921860 - + N - - N SA469 1 0.0 1.0 1 0 3 Y Y 0.0 0.0 8 1.34990433483023 1.07697285729625 1.34990433483023 1.07697285729625 4 - - 0.980570243680713 HCT116-unstranded CGHSA0331 5.0 130725 GCTGGTGCTCACCCTCCTCTGCAGCCTGGTGCCCATCTGTGTGCTGCGCCGGCCAGGAGCTAACCATGAAGGCTCAGCTTCCCGCCAGAAAGCCCTGAGCCTAGTAAGCTGTTTCGCGGGGGGCGTCTTTTTGGCCACTTGTCTCCTGGACCTGCTGCCTGACTACCTGGCTGCCATAGATGAGGCCCTGGCAGCCTTGCACGTGAC|GTTACAGGCCCAAAAACTGCGACTGGCATACACAAGGAGCTCTCATTATGGTGGGTCTCTGCCCAATGTTAACCAGATTGGCTCTGGCCTGGCCGAGTTCCAGAGCCCCCTCCACTCACCTTTGGATTCATCTCGGAGCACTCGGCACCATGGGCTGGTGGAACGGGTGCAGCGAGATCCTCGAAGAATGGTGTCCCCACTTCGCCGATACACCCGCCACATTGACAGCTCTCCCTATAGTCCTGCCTACTTATCTCCTCC 4 1.02067099955013e-05 0.9080021209353708 0.165784344157028 Y Y 3.5204207511572005 3.50744965188915 3.50744965188915 0 0.995179382590155 0.0 Y 0.2961898581626031 N Y 2865 1472 ENSG00000143570 ENSG00000160741 + - 1 1 153940188 153931101 coding intron SLC39A1 CRTC2 153931575 153920145 - - 0.0 153934696 153927642 - + N - - N SA469 1 0.0 1.0 1 0 3 Y Y 0.0 0.0 5 1.30564517631121 1.11385548939544 1.30564517631121 1.11385548939544 4 - - 0.954166585701384 HCT116-unstranded CGHSA0331 5.0 130723 CCTCTGCAGCCTGGTGCCCATCTGTGTGCTGCGCCGGCCAGGAGCTAACCATGAAGGCTCAGCTTCCCGCCAGAAAGCCCTGAGCCTAGTAAGCTGTTTCGCGGGGGGCGTCTTTTTGGCCACTTGTCTCCTGGACCTGCTGCCTGACTACCTGGCTGCCATAGATGAGGCCCTGGCAGCCTTGCACGTGAC|GTTACAGGCCCAAAAACTGCGACTGGCATACACAAGGAGCTCTCATTATGGTGGGTCTCTGCCCAATGTTAACCAGATTGGCTCTGGCCTGGCCGAGTTCCAGAGCCCCCTCCACTCACCTTTGGATTCATCTCGGAGCACTCGGCACCATGGGCTGGTGGAACGGGTGCAGCG 4 1.0 0.9080021209353708 0.165784344157028 Y Y 3.5204207511572005 3.50744965188915 3.50744965188915 0 0.994268533308278 0.0 Y 0.6618434651883871 N Y 2865 1472 ENSG00000143570 ENSG00000160741 + - 1 1 153940188 153931101 coding intron SLC39A1 CRTC2 153931575 153920145 - - 0.0 153934696 153927642 - + N - - N SA469 1 0.0 1.0 1 0 3 Y Y 0.0 0.0 9 1.29089212347153 1.23187991211283 1.29089212347153 1.23187991211283 4 - - 0.986967090687505 HCT116-unstranded CGHSA0331 5.0 381942 GGGGGCGCCTCGCCCGCCTCCTCCTCCTCAGCCGCCTCGTCCCCGTCCTCGGGCCGCGCCCCCGGCGCCGCGCCCTCCGCCGCCGCCAAGAGCCACCGCTGTCCCTTCCCGGACTGCGCCAAAGCCTACTACAAGTCCTCGCACCTAAAGTCGCACCTGCGGACGCACAC|AGTGAAGGCTGCACCAGACGCATCTGTACCTGCCCTGTGCGGTCTGTCTGTGGCACGGGTTCTGAGGATTCCGAGTCTGAAGGTGGTGGTGTTGAAGCTGCATGGGATGGTTGCGAAACTGCTCTGCAAGATCTCGGCCTGTCCATGGCCCCCTCAGTGACGGGCAAGGGAGATTTCACCCCATCTAGAGCCCC 39 0.879295194457601 0.9145095299514092 0.513324854275085 Y Y 3.5246463161926003 3.5884982391585694 3.5246463161926003 0 0.0 0.0 Y 0.0 N Y 6206 4976 ENSG00000129911 ENSG00000079313 + - 19 19 1863567 1848452 coding intron KLF16 REXO1 1852399 1815248 - - 0.0 1863040 1830865 - + N - 5.63821334166372 N SA469 1 0.42857142857142894 1.0 1 0 2 N Y 0.42857142857142894 0.115183246073298 23 1.29089212347153 1.40891654618893 1.40891654618893 1.29089212347153 4 - 3.21739130434783 0.98975341396599 HCT116-unstranded 5.0 381941 GACCCGGAGCCGCCCCGGGGGGCGCCTCGCCCGCCTCCTCCTCCTCAGCCGCCTCGTCCCCGTCCTCGGGCCGCGCCCCCGGCGCCGCGCCCTCCGCCGCCGCCAAGAGCCACCGCTGTCCCTTCCCGGACTGCGCCAAAGCCTACTACAAGTCCTCGCACCTAAAGTCGCACCTGCGGACGCACACA|GGGCTGGGTTACGACCCCTACAACCCTGAGCTGCCCAAGCCCCCCGCGCAGAGGGAGAATGGCACCCTGGGCCTGGGGGAGGAGCCGCGCCCGGATGTGCTGGAGTTGGAGCTGGTCAACCAGGCCATCGAGGCCGTGCGCAGTGAGGTGGAGCTGGAGCAGCGGCGCTACCGGGAGCTGCTGGAGACGACCCGTGAGCACCGCTCCGCCGAGGCCC 65 1.0 0.800603118981758 0.58374185653808 Y Y 3.5246463161926003 3.3576612292090497 3.3576612292090497 1 0.0 0.0 Y 0.0 N Y 6206 4976 ENSG00000129911 ENSG00000079313 + - 19 19 1863567 1848452 coding intron KLF16 REXO1 1852399 1815248 - - 0.0 1863040 1828630 - + N - 6.15194609100561 N SA469 1 0.38860103626943 1.0 1 0 2 Y Y 0.38860103626943 0.0225225225225225 49 1.4236695990286 1.63758886520389 1.63758886520389 1.4236695990286 4 - 0.775510204081633 0.98975341396599 HCT116-unstranded 5.0 239855 CAAGATGCTACTGCAGTGGTCCCTCCAATGTGTTTGCTGCCAAATTCACATTATGAGCAAGTCATGACTGCATTTGGAGGCAAAGGGTATTTTGTACAAACACCAGAAGAACTCCAAAAATCCCTGAGGCAGAGCCTAGCAGACACAACTAAACCTTCTCTTATCAACATCATGATTGAGCCACAAGCCACACGGAAGGCCCAG|CCCTTCCCAGCCTGGATCAGAAGAAGCGTGGTGGCCACAAAGCATGCTGCCTGCTGACGCCTCCTCCACCACCACTGTTCCCACCACCATTCTTCAGAGGTGGCCGAAGTCCGCTTCTCTCCCCAGAC 7 1.0 0.71937420768803 0.651092992357361 Y Y 3.4120729950243103 3.63552422018169 3.4120729950243103 0 0.0 0.0 Y 0.0 N Y 843 350 ENSG00000131373 ENSG00000206561 + - 3 3 15643338 15563258 coding coding HACL1 COLQ 15602211 15491640 - - 0.0 15604865 15531144 - + N - - N SA469 1 0.0 1.0 1 0 2 N Y 0.0 0.0 5 0.988454540258202 0.597498640006824 0.988454540258202 0.597498640006824 4 - - 0.9919444305317472 HCT116-unstranded 5.0 239854 ATTTTGTACAAACACCAGAAGAACTCCAAAAATCCCTGAGGCAGAGCCTAGCAGACACAACTAAACCTTCTCTTATCAACATCATGATTGAGCCACAAGCCACACGGAAGGCCCA|GGTCATATGGAGACCTGCAATGCACCCAGTACTGCTACATCGACTCCACGCCCTGCCGCTACTTCACCTGAGGGCCGTGAGGAGAAGGTGGGCTGCGCCCCACAGAACTGGCAGCAGCTTCTCCACTGTCATCAAACTGGCCATGTC 4 0.0594507876741326 0.298323430395371 0.245800714122654 Y Y 3.4439989565073 3.61464054707278 3.4439989565073 0 0.0 0.0 Y 0.0 N Y 843 350 ENSG00000131373 ENSG00000206561 + - 3 3 15643338 15563258 coding coding HACL1 COLQ 15602211 15491640 - - 0.0 15604865 15493220 - + N - - N SA469 1 0.0 1.0 1 0 2 N Y 0.0 0.0 7 0.597498640006824 1.09910243655576 1.09910243655576 0.597498640006824 4 - - 0.9250556725354642 HCT116-unstranded 5.0 359658 ACTCCTGGCGTGCTGGCTCCTCGGATTGAAAGTGTGGAGACAGGCCTGAAGCTGGCCCTGTGTGGAACGGTGCTGGACCACCTGGTCGGGGAGGAGACCATGGCTGACTACCTGCTGTACACCCTCAACAAACACCAGCGCTTTGGGT|GGACCAGGTGCTCTGAGGCTGGCGTACAGACACAGCACGTGCGACGGAGTGGTGTTGGTCCGACACCACGGGGCATGGGGATACGTGTGCAACCAGGAGTGGACGCTGGCAGAGGCCTCTGTCGTGTGCAGGCAGCTGGGCTGCGGCCCTGCC 8 0.9708222718256292 0.329886499001778 0.742615913944707 Y Y 3.32320511986986 3.53568860456667 3.32320511986986 0 0.0 0.0 Y 0.0 N Y 344 307 ENSG00000148824 ENSG00000214279 + - 10 10 135234811 135337062 coding coding MTG1 RP11-108K14.4 135207598 135267432 + + 0.0 135216277 135269741 + - N - - N SA469 1 0.0 1.0 1 0 1 N Y 0.0 0.0 8 1.09910243655576 1.12123201581527 1.12123201581527 1.09910243655576 4 - - 0.957986085846608 HCT116-unstranded 5.0 326560 GAGGGCCCCGAATACTGAGGACACGGGCCTTTGCCGAGTGCTGTACTCCTGCGTCTTCGGTGCTGAGAAGTCACCTGATGACCCACGGCCGCATGGTGCCGAGAGGGACAGGCTTCTCCGGAAGGAACAGATTTTAGCTGTGGCC|AGTCTCGTTTCCTCTCAGTCCATCCACCCTTCATGGGGCCAGAGCCCTCTCTCCAGAATCTGAGCAGCAATGCCGTTTGCTGAAGACAAGACCTATAAGTATATCTGCCGCAATTTCAGCAATTTTTGCAATGTGGATGTTGTAGAGATTCTGCCTTACCTGCCCTG 5 0.845985439993 0.595347351134177 0.438349465813894 Y Y 3.76848670091893 3.22846030519079 3.22846030519079 0 0.9931254819874408 0.0100694061914729 Y 0.8075134956483421 N Y 1521 9030 ENSG00000125843 ENSG00000088888 + - 20 20 3805949 3849280 coding utr5p AP5S1 MAVS 3801178 3827487 + + 0.0 3802940 3835205 + - N - - N SA469 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 5 0.944195381739178 1.11385548939544 1.11385548939544 0.944195381739178 4 - - 0.981972644863476 HCT116-unstranded 5.0 276039 GGCCTGTGCCTGCGCAACCCCGACGTGACGGCGTCCGCGCTTCAGGGTCTGCACATCGCGGTCCACGAGTGTCAGCACCAGCTGCGCGACCAGCGCTGGAACTGCTCCGCGCTTGAGGGCGGCGGCCGCCTGCCGCACCACAGCGCCATCCTCAAGCGCG|GATCAAGTCTTCCATACCAGGGACCAGGCCAAAACCAGACTGCCACTGCCCCTACTTGGGCCCCACTGTCCCCAGAAAGCAGCTGCTGTGATCATGGGCAATATCTTTGGAAACCTTCTCAAGAGCCTGATTGGGAAGAAGGAGATGCGCAT 6 0.8905905824924379 0.6696067973585761 0.24424485387588896 N Y 3.2044146420399 3.44040523365767 3.2044146420399 1 0.993442071632756 0.0 Y 0.0 N Y 337 13746 ENSG00000169884 ENSG00000134287 + - 12 12 49365546 49351334 coding utr5p WNT10B ARF3 49359123 49297286 - - 0.0 49363872 49334971 - + N - - N SA469 1 0.0 1.0 1 0 1 N N 0.0 0.0 7 1.1064789629756 0.944195381739178 1.1064789629756 0.944195381739178 4 - - 0.954387805747462 HCT116-unstranded 5.0 381793 GTGCGCAGGCGCGGGAAAGTTGAACTAATAAAGTTTGTACGAGTTCAGTGGAGGAGACCGCAAGTTGAGTGGAGGAGGCGGCGGTGGGGCCCCGGACCAGGTGCCTCCATGGCAGGCTCTGAAGAGCTGGGGCTCCGGGAAGACACGCTGAGGGTCCTAGCTGCCTTCCTTAGGCGTGGTGAGGCTGCCGGGTCTCCTGTTCCAACTCCACCTAGG|TGTCCTGTGGCCAGGCGGAAAGCAGTGAGAAGCCCAACGCTGAGGACATGACATCCAAAGATTACTACTTTGACTCCTACGCACACTTTGGCATCCACGAGGAGATGCTGAAGGACGAGGTGCGCACCCTCACTTACCGCAACTCCATGTTTCATAACCGGCACCTCTTCAAGG 18 0.8048854348932791 0.589637386847116 0.867683178791287 Y Y 3.612079893993029 3.43105836246279 3.43105836246279 0 0.0 0.0 Y 0.0 N Y 1982 33113 ENSG00000126453 ENSG00000126457 + - 19 19 50177172 50192286 coding coding BCL2L12 PRMT1 50168399 50179043 + + 0.0 50170056 50183744 + - N - - N SA469 2 0.0 1.3125 1 5 3 Y Y 0.0 0.0 16 1.3941634933492602 1.3203982291508798 1.3941634933492602 1.3203982291508798 4 - - 0.905052659442266 HCT116-unstranded 5.0 328748 TGGTGGATAGACACTCGAGACCAGAAATCATATTTTTGCTGAAAGTAGATGATTTACCTGAGGATAATCAGGAACGTTTTAATAGCCTTTTCTCTCTAAGGGAGAAGTGGACAGAAGAAGATATTGCTCCATATATTCA|GAAGCCGGGAAGCCAAGCTCCGCGGGACCGCTTCATGCCGCTGACTGGTGTAGAGCCCGCCAGAATGAACAGGAAGAAAGGAGACAAGGGCTTTGAAAGCCCAAGGCCATATAAATTAACCCATCAGGTCGTCTGCATCAACAACATAAATTTCCAGA 2 0.766158490704381 0.308034737230572 0.5255495929096379 Y Y 3.5859375860788303 3.45041445226185 3.45041445226185 4 0.0 0.0 Y 0.0 N N 587 5782 ENSG00000136982 ENSG00000064313 + - 8 8 120868250 120845103 coding utr5p DSCC1 TAF2 120846216 120743015 - - 0.0 120850499 120844838 - + N - - N SA469 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 7 0.973701487418527 0.8040413797622691 0.973701487418527 0.8040413797622691 4 - - 0.95462162341784 HCT116-unstranded 5.0 336109 TTAATAGCCACAGGTCTTTTTCTTGTTGGATAATTCTCCACCAAAATTTTCTCCTTGCAAAAGGGAAACTTCACCTTCAGCTGTAAATGTCAGGAAATGGGGTACATTGCTGAGAAAGCCTGGGAATCACTGCTCTTGTAAG|CTGAGGTCCCCGCCTGGCGCTCCGGCTGGCAGAGCGGCTGGCCGGCGACCGGCGGTCCCGGGCGGGCGGCGGACTCGGCGGCACTGCGCGCGGCAGCCTCCGCATCAGCAGCCGCCGCGGCAGCAGCACCAGCAGCGCACCCGCCTCTCAGTCGGCCGTGGCCTCCATTGCTCTCCCCACTGCCG 6 0.77765172808843 0.9206931288223728 0.583489160424553 N Y 3.62361669590707 3.21075977977757 3.21075977977757 2 0.992979216763999 0.0 Y 0.0 N N 509 423 ENSG00000109265 ENSG00000174799 - + 4 4 57194791 56899270 utr5p downstream KIAA1211 CEP135 57036361 56815037 + + 0.0 57045450 56915465 - + N - - N SA469 1 0.254054054054054 1.0 1 0 1 N N 0.0 0.254054054054054 6 0.892559696800317 1.06221980445658 1.06221980445658 0.892559696800317 4 - - 0.985399086184476 HCT116-unstranded 5.0 57427 TATCCTCCTGCCTCGGCCTCCCATGCTGTTGGGATTACAGCTATAAATTCATACAATTATCAGAGTTTGGTTTTGGTCAAGTCATAATTGTGAGTGAAGAACCATGGAAGGAGAACATTTCTTGCTCATCAACTACTTTCATAAAATCAACAATTTGCTTAA|GTGTTTGCTTCAGAATGTATACAGAAGATGAAGCTAGGAAAATAGGAGTGGTTGGCTGGGTGAAGAATACCAGCAAAGGCACCGTGACAGGCCAAGTGCAGGGGCCAGAAGACAAAGTCAATTCCATGAAGTCCTGGCTGAGCAAGGTTGGAAGCCCTAGTTCTC 9 1.0 0.401546336069614 0.287674125185605 Y Y 3.09975389471248 3.5733677143949105 3.09975389471248 0 0.993845980126468 0.0 Y 0.993845980126468 N N 59 193 ENSG00000239235 ENSG00000170634 + - 2 2 54307601 54532437 intron coding AC008280.5 ACYP2 54197975 54342540 + + 0.0 54284497 54362590 + - N - - N SA469 1 0.263513513513513 1.0 1 0 1 N Y 0.263513513513513 0.0 8 1.09172591013592 1.17286770075414 1.17286770075414 1.09172591013592 4 - - 0.9190864552945052 HCT116-unstranded 5.0 381232 GGTGTCAGGCAAGCCAGCAGAGAGCTCTGCTGTAGCTGCCACTGAGAAGAAGGCGGTGACTCCAGCTCCTCCCATAAAGAGGTGGGAGCTGTCCTCGGACCAGCCTTACCTGTGACACTGCACCCTCACGGCCACCCGACTACTTTGCCTCCTTGGATTTCCTCCAGGGAGAATGTGACCTAATTTATGACAAATACGTAGAGCTCAG|CAACCCGACTCCGAGAATGGACGTTTCATTTATTCATTTACTCACCAAATGTTTACTAAGAGCCTACTATGAGTCAAGCACTATGTGTCAGATCCTGAGAATAAAGCAGTGAGCAACAGAAGATCCCTGCCCTCCAGTAGCTAGCATTCTATGGGGACTCGGACAACAA 23 1.0 0.558601554297271 0.458770674169549 Y Y 3.5816815158199 3.48639814491089 3.48639814491089 0 0.994098494098494 0.0 Y 0.982295482295482 N N 2633 5516 ENSG00000167774 ENSG00000167775 + - 19 19 8386280 8373240 utr3p upstream NDUFA7 CD320 8376234 8367011 - - 0.0 8376296 8373768 - + N - - N SA469 1 0.793103448275862 1.0 1 0 1 N Y 0.0 0.793103448275862 22 1.3794104405095802 1.2835155970516998 1.3794104405095802 1.2835155970516998 4 - - 0.9805975981117968 HCT116-unstranded 5.0 2555 AGCGGCTGATGACTCCTCTGTCAAGCTCTGGGATCTGCGCAAGCTTAAGAACTTTAAGACTTTGCAGCTGGATAACAACTTTGAGGTAAAGTCACTGATCTTTGACCAGAGTGGTACCTACCTGGCTCTTGGGGGCACGGATGTCCAGATCTACATCTGCAAACAATGGACGGAGATTCTTCACTTTACAGAGC|CCCACGATGTCGGCCAACGCCACACTGAAGCCACTCTGCCCCATCCTGGAGCAGATGAGCCGTCTCCAGAGCCACAGCAACACCAGCATCCGCTACATCGACCACGCGGCCGTGCTGCTGCACGGGCTGGCCTCGCTGCTGGGCCTGGTGGA 21 0.779630153553552 0.9192767017924058 0.6943005922687622 N Y 3.58424216889964 3.53209488171704 3.53209488171704 6 0.0 0.0 Y 0.0 N Y 9572 1780 ENSG00000110107 ENSG00000183134 + - 11 11 60674060 60623444 coding intron PRPF19 PTGDR2 60658202 60618413 - - 0.0 60665318 60621204 - + N - 84.9003933910307 N SA469 1 0.0 1.0 1 0 1 N N 0.0 0.0 18 1.38678696692942 0.9810780138383648 1.38678696692942 0.9810780138383648 4 - 0.222222222222222 0.962144956465021 HCT116-unstranded 5.0 2400 CAGTTGGAAAGCAAGGTGCGGCGGAAAGGCCTGGGGAAGTTCCTCATACAGATCCTGCAGCTCATGGCCAACAGCACACAGATGAAGAAGGTTATGTTAACAGTATTTAAACACAATCATGGTGCCTACCAGTTCTTCAGAGAAGCGTTGCA|GAATTGGCCGTTGGGCTTACCTCCTGCTTCGTGACCTTCCTCCTGCCAGCGGGCTGGATCCTGTCACACCTGGAGACCTACAGGAGGCCAGAGTGAAGGGGTCCGTTCTGTCCCTCACACTGTGACCTGACCAGCCCCACCGGCCCATCCTGGTCATGTTACTGCATTTGTGG 13 0.910837408084468 0.461524586837152 0.4323636158056021 N Y 3.86529765513778 3.5514509715161 3.5514509715161 4 0.0 0.0 Y 0.0 N Y 546 14689 ENSG00000110583 ENSG00000176340 + - 11 11 63724800 63744015 coding coding NAA40 COX8A 63706431 63742079 + + 0.0 63721521 63743697 + - N - - N SA469 1 0.0 1.0 1 0 1 N N 0.0 0.0 13 1.09910243655576 1.19499728001365 1.19499728001365 1.09910243655576 4 - - 0.9667117086364228 HCT116-unstranded 5.0 37231 GGCGGGAGCGGAGACCTCGCTGCGCTCATGGCGTCGCCCGGAAGTGGAATTACTGGGCAAAGGGCATTCAGATTTGGGAGAAGTAGCCCCAGAAATAAAAGCATCAGAGAGACGAACAGCTGTGGCCATTGCAGATTTGGAATGGAGAGAAATGGAAGGAGATGATTGCGAGTTCCGTTATGGAGATGGTACAAATGAGGCTCAGGACAATGATTTTCCAACA|GGTGCTGTCCTGGAGCCGAGAGCTGCCTTGCGCTTGGCGCGCCCTGCACACCTCCCCGGTCTGCGCCAAGAACCGGGCGGCCCGAGTACGCGTAAGCAAGGGGGACAAGCCGGTGACCTACGAGGAGGCACACGCGCCGCACTACATCGCCCACCGTAAAGGCTGGCTGTCGCTGCACACAGGTAACCTGGATGGAGAGGACCATGCCGCAGAGC 17 0.717465763494437 0.7766123938840941 0.502569732040071 Y Y 3.59425138750382 3.26248291143709 3.26248291143709 0 0.995359432113154 0.0 Y 0.49417810033374 N Y 3325 4484 ENSG00000106608 ENSG00000062582 + - 7 7 43966010 43909492 coding utr5p URGCP MRPS24 43915493 43906157 - - 0.0 43921258 43908975 - + N - - N SA469 2 0.168181818181818 1.07692307692308 1 1 1 N Y 0.168181818181818 0.0 13 1.541694021746 1.5269409689063302 1.541694021746 1.5269409689063302 4 - - 0.9550820278233908 HCT116-unstranded 5.0 275490 GTGCTGTTCCTCAGCATTTCTGGAGGCTCCGTTTCTGGCAGGAAATCATAATCTAGGTACTCATATTCGGTGGCCTGTCTCCGGTCCCGGGCAAGCAGGGGACCCAAGGCTTTCTCGGCTTCATCTGCCCAGGTGTCCCACAGCTGCAAGCTGTTGCCAGGGCCCAGTAGGATCAGCAACAGGAGGAGTTGCAGAGGCATGGCACCAC|ACTGGCCGTGTCTGTGGTTTTCTTGGGGATGCTGATCAGGTCGCACTTCTTGTTTGCAGTGGGCTTGCTATCCAGAATGTTCTTCTTGACCACCTTGAGATCCCTGTTTTTGCCTGGAATGTACCCGTGCTTCAAGGAGATGAGGATTGGGTCTGCATTCTTGCCTTCGAACCACTCTTCTGCCTCCAGCGCGGCCTCTGGCCC 302 1.0 0.8472037482956079 0.605427398117867 Y Y 3.34520999103131 3.4048456965317007 3.34520999103131 6 0.0 0.0 Y 0.0 N Y 5916 10943 ENSG00000110876 ENSG00000110880 - + 12 12 109027735 109125372 utr5p coding SELPLG CORO1C 109015686 109038885 - - 0.0 109018088 109042381 + - N - 1.02181736753337 N SA469 1 0.0 1.0 1 0 3 Y Y 0.0 0.0 252 1.56382360100551 1.56382360100551 1.56382360100551 1.56382360100551 4 - 3.34126984126984 0.979651332740703 HCT116-unstranded 5.0 274540 GGGGTTCCAGGCCCAGTCAGAGGAGTGGTGTCAGTGCTGTTCCTCAGCATTTCTGGAGGCTCCGTTTCTGGCAGGAAATCATAATCTAGGTACTCATATTCGGTGGCCTGTCTCCGGTCCCGGGCAAGCAGGGGACCCAAGGCTTTCTCGGCTTCATCTGCCCAGGTGTCCCACAGCTGCAAGCTGTTGCCAGGGCCCAGTAGGATCAGCAACAGGAGGAGTTGCAGAGGCATGGCACC|ACACTGGCCGTGTCTGTGGTTTTCTTGGGGATGCTGATCAGGTCGCACTTCTTGTTTGCAGTGGGCTTGCTATCCAGAATGTTCTTCTTGACCACCTTGAGATCCCTGTTTTTGCCTGGAATGTACCCGTGCTTCAAGGAG 303 0.021812394742878 0.70579994192395 0.596914620746739 Y Y 3.47076375903745 3.3948364779275098 3.3948364779275098 1 0.0 0.0 Y 0.0 N Y 5916 10943 ENSG00000110876 ENSG00000110880 - + 12 12 109027735 109125372 intron coding SELPLG CORO1C 109015686 109038885 - - 0.0 109018088 109042381 + - N 187.095473522722 1.02010160376528 N SA469 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 5 0.8778066439606421 0.8778066439606421 0.8778066439606421 0.8778066439606421 4 3.4 167 0.980493998053108 HCT116-unstranded 5.0 275350 CACAGCTTCCAAAGACAAGAAAGTGAGAGTCATTGATCCCAGGAAACAAGAGATTGTTGCTG|TGCCATGCCTCTGCAACTCCTCCTGTTGCTGATCCTACTGGGCCCTGGCAACAGCTTGCAGCTGTGGGACACCTGGGCAGATGAAGCCGAGAAAGCCTTGGGTCCCCTGCTTGCCCGGGACCGGAGACAGGCCACCGAATATGAGTACCTAGATTATGATTTCCTGCCAGAAACGGAG 19 0.000107246732484626 0.490364332521465 0.7983529471230308 Y Y 3.43105836246279 3.30434773350738 3.30434773350738 0 0.0 0.0202114844063713 Y 0.0202114844063713 N Y 10943 5916 ENSG00000110880 ENSG00000110876 + - 12 12 109125372 109027735 coding coding CORO1C SELPLG 109038885 109015686 - - 0.0 109052514 109018088 - + N - - N SA469 1 0.0 1.0 1 0 5 N Y 0.0 0.0 8 1.14336159507479 1.23925643853267 1.23925643853267 1.14336159507479 4 - - 0.959624796121054 HCT116-unstranded 5.0 276139 CAGGCCCAGTCAGAGGAGTGGTGTCAGTGCTGTTCCTCAGCATTTCTGGAGGCTCCGTTTCTGGCAGGAAATCATAATCTAGGTACTCATATTCGGTGGCCTGTCTCCGGTCCCGGGCAAGCAGGGGACCCAAGGCTTTCTCGGCTTCATCTGCCCAGGTGTCCCACAGCTGCAAGCTGTTGCCAGGGCCCAGTAGGATCAGCAACAGGAGGAGTTGCAGAGGCATGGCAC|AGCAACAATCTCTTGTTTCCTGGGATCAATGACTCTCACTTTCTTGTCTTTGGAAGCTGTGCAGATCAGACTGCCATTCCGGTTCCAGCTCACATTGTAAATCATGTCTGAATGCATATCGTCCAAGTTTATAAGGGCTTCCCCTGTTCCCACATTCCAGATGATAATGGCAT 23 0.862301369063538 0.857307040916812 0.614426106824888 Y Y 3.35926336043241 3.42360979693834 3.35926336043241 0 0.0 0.0 Y 0.0 N Y 5916 10943 ENSG00000110876 ENSG00000110880 - + 12 12 109027735 109125372 coding coding SELPLG CORO1C 109015686 109038885 - - 0.0 109018088 109052514 + - N - 1.3525157719117 N SA469 1 0.0 1.0 1 0 3 Y Y 0.0 0.0 37 1.64496539162372 1.31302170273104 1.64496539162372 1.31302170273104 4 - 27.7297297297297 0.98975341396599 HCT116-unstranded 5.0 276059 CTGTCAATCCCAGATTTGTTGCCATAATCATAGAGGCAAGTGGGGGAGGAGCGTTCCTTGTCCTCCCTCTGCACAAGACTGGTCGAATTGACAAATCTTACCCTACAGTATGTGGCCACACAGGACCAGTGCTGGACATAGACTGGTGCCCACATAACGATCAGGTCATTGCCAGCGGTTCAGAGGACTGCACGGTCA|TGGTGCCATGCCTCTGCAACTCCTCCTGTTGCTGATCCTACTGGGCCCTGGCAACAGCTTGCAGCTGTGGGACACCTGGGCAGATGAAGCCGAGAAAGCCTTGGGTCCCCTGCTTGCCCGGGACCGGAGACAGGCCACCGAATATGAGTACCTAGATTATGATTTCCTGCCAGAAACGGAGCCTCCAGAAATGCTGAGGAACAGCACTGACAC 80 0.845427203222234 0.968715600789591 0.413864191901984 Y Y 3.65016023140539 3.41584813211242 3.41584813211242 0 0.0 0.0 Y 0.0 N Y 10943 5916 ENSG00000110880 ENSG00000110876 + - 12 12 109125372 109027735 coding utr5p CORO1C SELPLG 109038885 109015686 - - 0.0 109072048 109018088 - + N - - N SA469 1 0.0 1.0 1 0 5 N Y 0.0 0.0 102 1.50481138964682 1.45317570470795 1.50481138964682 1.45317570470795 4 - - 0.98975341396599 HCT116-unstranded 5.0 275853 TGTGGAAAGGGTGACAGCAGTATTCGCTATTTTGAGATCACGGATGAATCCCCGTACGTCCACTACCTCAACACATTCAGCAGCAAGGAGCCTCAGAGAGGGATGGGTTACATGCCCAAGAGGGGACTTGATGTTAACAAATGTGAGATTGCCA|GGTGCCATGCCTCTGCAACTCCTCCTGTTGCTGATCCTACTGGGCCCTGGCAACAGCTTGCAGCTGTGGGACACCTGGGCAGATGAAGCCGAGAAAGCCTTGGGTCCCCTGCTTGCCCGGGACCGGAGACAGGCCACCGAATATGAGTACCTAGATTATGATTTCCTGCCAGAAACGGAGCCTCCAGAAATGCTGAGGAACAGCACTGACACCACT 20 0.850756652355733 0.562857359252147 0.191797277764834 Y Y 3.46873747229102 3.47076375903745 3.46873747229102 3 0.0 0.0 Y 0.0 N Y 10943 5916 ENSG00000110880 ENSG00000110876 + - 12 12 109125372 109027735 coding coding CORO1C SELPLG 109038885 109015686 - - 0.0 109046048 109018088 - + N - - N SA469 1 0.0 1.0 1 0 5 N Y 0.0 0.0 18 1.14336159507479 1.4753052839674698 1.4753052839674698 1.14336159507479 4 - - 0.987338926382026 HCT116-unstranded 5.0 274640 GGAGGCTCCGTTTCTGGCAGGAAATCATAATCTAGGTACTCATATTCGGTGGCCTGTCTCCGGTCCCGGGCAAGCAGGGGACCCAAGGCTTTCTCGGCTTCATCTGCCCAGGTGTCCCACAGCTGCAAGCTGTTGCCAGGGCCCAGTAGGATCAGCAACAGGAGGAGTTGCAGAGGCATGGC|ACCTTGTGCAGAGGGAGGACAAGGAACGCTCCTCCCCCACTTGCCTCTATGATTATGGCAACAAATCTGGGATTGACAGCACAAAAGGAACTATCCCAGGTCACACGAGAAACCCGGATGTCATCATAGCACTGGTCATTTTTCACCGCTT 9 0.8937381374901899 0.684327341072222 0.665813903487401 Y Y 3.41054541171446 3.48743121468078 3.41054541171446 0 0.0 0.0 Y 0.0 N Y 5916 10943 ENSG00000110876 ENSG00000110880 - + 12 12 109027735 109125372 coding intron SELPLG CORO1C 109015686 109038885 - - 0.0 109018088 109094900 + - N 175.057984161229 2.90134347992773 N SA469 2 0.0 1.46153846153846 1 6 2 Y Y 0.0 0.0 13 1.38678696692942 1.06221980445658 1.38678696692942 1.06221980445658 4 2.15384615384615 76.2307692307692 0.9453631569257142 HCT116-unstranded 5.0 275487 TCCAGGCCCAGTCAGAGGAGTGGTGTCAGTGCTGTTCCTCAGCATTTCTGGAGGCTCCGTTTCTGGCAGGAAATCATAATCTAGGTACTCATATTCGGTGGCCTGTCTCCGGTCCCGGGCAAGCAGGGGACCCAAGGCTTTCTCGGCTTCATCTGCCCAGGTGTCCCACAGCTGCAAGCTGTTGCCAGGGCCCAGTAGGATCAGCAACAGGAGGAGTTGCAGAGGCATGGCAC|TGGAATGTGGCCTATCGCTGGTTGACAAATCTGAAATGGAATGTCTCCAAATGGCAGTGCCTCCCTTTCCGCCCTCCCTAGGACCACACCAATAACCAGCTCCCAAGCACAAGTTCTTGCTCCCATTTTTTCTGTAGGGGTGGGGGTGGGACCT 9 0.682510210683694 0.4131997950029721 0.302837831304211 Y Y 3.35926336043241 3.4974005804916204 3.35926336043241 1 0.0 0.0 Y 0.0 N N 5916 10943 ENSG00000110876 ENSG00000110880 - + 12 12 109027735 109125372 coding utr3p SELPLG CORO1C 109015686 109038885 - - 0.0 109018088 109041025 + - N - 0.92530380584844 N SA469 1 0.0 1.0 1 0 3 N Y 0.0 0.0 9 1.224503385693 1.1654911743343 1.224503385693 1.1654911743343 4 - 35.5555555555556 0.974032519498526 HCT116-unstranded 5.0 326296 GCTCGGCTCCCATAGCGCCCGCGACAGCGGTCCGGACGCCGCCCGAACATGGACTCCGCCGGCCAAGGTGTGGCTGCCCGGACTCCTGCTGTTGAGGGTCTGACAGAGGCTGAGGAGGAGGAGCTCAGGGCTGAGCTTACCAAGGTGGAAGAGGAAATTGTCACTCTGCGCCAGGTCCTGGCAGCCAAGGAGAGGCACTGTGGAGAGCTCAAGAGGAGGCTGGGCCTCTCCACCCTGGGGGAGCTGAAACAGAACCTGTCCAGGAGCTGGCATGACGTGCAGGTCTCTAGCGC|GAGATTTGTTATGAGGAATTGGCCCACGTCATTATGGAGACGGAATCTCATGCTCTGCCATTTGCTGAAGATTGAGGAAAGCAGTGGGATAATAACAGTCCAAGGACAGGAGGAGACACGTGGCCCCGCTCAGGCTGGCAGGCGAGAAGGAAAACCCAGGCCA 8 8.987859627948213e-08 0.6585969093024261 0.576526760011136 Y Y 3.67952553980864 3.5110433747387795 3.5110433747387795 0 0.987756910230766 0.0 Y 0.0 N N 7734 7011 ENSG00000101150 ENSG00000101152 + - 20 20 62522898 62567384 coding intron TPD52L2 DNAJC5 62496596 62526518 + + 0.0 62505169 62557895 + - N - 0.0127247958853361 N SA469 1 1.0 1.0 1 0 4 N Y 0.0 1.0 5 1.04009022519706 0.8483005382812929 1.04009022519706 0.8483005382812929 4 - 4.6 0.980493998053108 HCT116-unstranded CGHSA0577 5.0 325954 GGGGTTCTTGTCGGGGTGATATTTCAAGGCAAGCTTCCGATAGGACTTTTTAATGTCATCTGAGGTTGCGTTCTTGTCCAACCCAAGGACGTGGTACAATGACTCCCCAGAGGTAGACAGTGAGCGCTGTCTCTGGTCTGCCATGTTAGGCTATT|CTTGGCCGGCGGAGTCCATGTTCGGGCGGCGTCCGGACCGCTGTCGCGGGCGCTATGGGAGCCGAGCGGGCGGCGCCGGGAGAAGCTCGCCGCGTACACACTAGCCAGCGGAACTGCCTCAGCTCCGCGGCGTTTCGTAATCCGCGATGCGACGGCTA 3 1.0 0.841075566070794 0.113635065372711 Y Y 3.72824693801095 3.44036538086432 3.44036538086432 0 0.993568933634683 0.0 Y 0.0 N Y 7011 7734 ENSG00000101152 ENSG00000101150 - + 20 20 62567384 62522898 utr5p coding DNAJC5 TPD52L2 62526518 62496596 + + 0.0 62559688 62496737 - + N - 0.256845794418049 N SA469 2 0.0 1.5 1 4 4 N Y 0.0 0.0 8 1.0327136987772298 0.922065802479666 1.0327136987772298 0.922065802479666 4 - 37.625 0.9352289347916592 HCT116-unstranded CGHSA0577 5.0 129039 CCCGGAAGAGCCGTCAACTTAGCGAGCGCAACAGGCTGCCGCTGAGGAGCTGGAGCTGGTGGGGACTGGGCCGCAATGGACAAGCTGAAGAAGGTGCTGAGCGGGCAGGACACGGAGGACCGGAGCGGCCTGTCCG|AGACGGATGTTTCCAGTCCTAAAGATTAGTGTCACAGGGTTGGACCCCAATGCCATGTACTCCCTCCTGCTGGACTTTGTCCCTACGGACAGTCACCGCTGGAAGTACGTCAACGGGGAATGGGTGCCCGCTGGCAAGCCAGAGGTCTCCAGCCACAGCTGCGTCTACATTCACCCGGACTCCCCCAACTTTGGGGCCCACTGGATGAAAGCTCCCATCTCCTTCAGCAAAGTGAAGCTGAC 3 0.5465709113902689 0.8967684632860391 0.14466930321727695 N Y 3.34888341946764 3.5587317031712 3.34888341946764 0 0.992666459723731 0.0 Y 0.992666459723731 N Y 582 239 ENSG00000213064 ENSG00000143178 + - 1 1 168212378 168283664 coding coding SFT2D2 TBX19 168195176 168250278 + + 0.0 168195380 168260398 + - N - - N SA469 1 0.0 1.0 1 0 3 Y N 0.0 0.0 5 0.8556770647011299 1.34252780841039 1.34252780841039 0.8556770647011299 4 - - 0.9848514509482672 HCT116-unstranded CGHSA0039 5.0 125915 GGACCAGTGAAACAGCTGAAGCGAATGTTTGAGCCTACTCGTTTGATTGCAACTATCATGGTGCTGTTGTGTTTTGCACTTACCCTGTGTTCTGCCTTTTGGTGGCATAACAAGGGACTTGCACTTATCTTCTGCATTTTGCAGTCTTTGGCATTGACGTGGTACAGCCTTTCCTTCATACCATTTGCAAG|ACGGATGTTTCCAGTCCTAAAGATTAGTGTCACAGGGTTGGACCCCAATGCCATGTACTCCCTCCTGCTGGACTTTGTCCCTACGGACAGTCACCGCTGGAAGTACGTCAACGGGGAATGGGTGCCCGCTGGCAAGCCAGAGGTCTCCAGCCACAGCTGCGTCTACATTCA 5 0.992756464270343 0.8253925517670161 0.465654011987541 N Y 3.716171579866991 3.58064844605001 3.58064844605001 0 0.9941681568475832 0.0 Y 0.0 N Y 582 239 ENSG00000213064 ENSG00000143178 + - 1 1 168212378 168283664 coding coding SFT2D2 TBX19 168195176 168250278 + + 0.0 168208398 168260398 + - N - 0.0875069683358818 N SA469 1 0.0 1.0 1 0 3 Y N 0.0 0.0 9 1.26876254421202 1.21712685927316 1.26876254421202 1.21712685927316 4 - 0.111111111111111 0.98975341396599 HCT116-unstranded CGHSA0039 5.0 359648 GTCAGGAGAGCCGAACGCGGGCCGGGGGTGTCGGGGGCCTACGGGTCCCGGCCCCGGTCACTATGGACAGTTTTTTCTTCGCTCTGCCTCACCGAGGGAGCCAAAGACGAGTGTAATGTGGTAGAAGTTGTGGCCCGGAACCATGACCATCAGGAGATCGCAGTCCCTGTGGCCAACCTCAAGCTGTCCTGCCAACCCAT|GGTAACTGTTCAGTCCTCACCTAATTTTACACAGCATGTGAGGGAGCAGAGCCTGGTGACGGATCAGCTCAGCCGCCGCCTCATCCGGACCTACCAACTCTACAGCCGCACCAGCGGGAAGCACGTGCAGGTCCTGGCCAACAAGCGCATCAACGCCATGGCAGAGGACGGCGAC 5 0.157946674629417 0.540002547492227 0.6667603215671899 Y Y 3.3184850412945 3.6272104187567 3.3184850412945 0 0.0 0.0 Y 0.0 N Y 4400 360 ENSG00000107833 ENSG00000107831 + - 10 10 103543170 103535827 coding coding NPM3 FGF8 103541082 103530081 - - 0.0 103542235 103534669 - + N - - N SA469 1 0.0 1.0 1 0 3 Y Y 0.0 0.0 7 1.09910243655576 1.4015400197690902 1.4015400197690902 1.09910243655576 4 - - 0.981476504771665 HCT116-unstranded 5.0 358252 AGGGAGCCAAAGACGAGTGTAATGTGGTAGAAGTTGTGGCCCGGAACCATGACCATCAGGAGATCGCAGTCCCTGTGGCCAACCTCAAGCTGTCCTGCCAACCCATGTTACGATGAGCAATGATGTTTCTGAGGAGGAGAGCGAGGAAGAGGAAGAGGACAGTGATGAGGAAGAAGTTGAGCTGTGCCCCATCCTTCCTGCCAAAAAGCAGGGGGGCAGGCCCTAGCCCTCCTAGGT|AACTGTTCAGTCCTCACCTAATTTTACACAGCATGTGAGGGAGCAGAGCCTGGTGACGGATCAGCTCAGCCGCCGCCTCATCCGGACCTACCAACTCTACAGCCGCACCAGCGGGAAGCACGTGCAGGTCCTGGCCAACAAGCGCATCAACGCCATGGCAGAG 21 0.0207746031868297 0.453878726646543 0.3721211150906161 Y Y 2.94447344351231 3.71041843152174 2.94447344351231 4 0.0 0.0147331058855928 Y 0.0 N Y 4400 360 ENSG00000107833 ENSG00000107831 + - 10 10 103543170 103535827 utr3p coding NPM3 FGF8 103541082 103530081 - - 0.0 103541484 103534669 - + N - - N SA469 1 0.0 1.0 1 0 3 Y Y 0.0 0.0 19 1.34252780841039 1.12123201581527 1.34252780841039 1.12123201581527 4 - - 0.950909403919361 HCT116-unstranded 5.0 359470 TACGATGAGCAATGATGTTTCTGAGGAGGAGAGCGAGGAAGAGGAAGAGGACAGTGATGAGGAAGAAGTTGAGCTGTGCCCCATCCTTCCTGCCAAAAAGCAGGGGGGCAGGCCCTAGCCCTCCTAGGT|AACTGTTCAGTCCTCACCTAATTTTACACAGCATGTGAGGGAGCAGAGCCTGGTGACGGATCAGCTCAGCCGCCGCCTCATCCGGACCTACCAACTCTACAGCCGCACCAGCGGGAAGCACGTGCAGGTCCTGGCCAACAAGCGCATCAACGCCATGGCAGAGGACGGCGACCCCTTCGCAAAGCTCATCGTGGAGACGGAC 21 0.0318099131986414 0.453878726646543 0.3721211150906161 Y Y 2.94447344351231 3.71041843152174 2.94447344351231 0 0.0 0.0 Y 0.0 N Y 4400 360 ENSG00000107833 ENSG00000107831 + - 10 10 103543170 103535827 utr3p coding NPM3 FGF8 103541082 103530081 - - 0.0 103541484 103534669 - + N - - N SA469 1 0.0 1.0 1 0 3 Y Y 0.0 0.0 69 1.43842265186828 1.4826818103872998 1.4826818103872998 1.43842265186828 4 - - 0.939332529041162 HCT116-unstranded 5.0 317486 CAGTAGAAGATGCCACGACAGCCATGGAGCTCTACCGGCTGGTGGAGGTGCAGTGGGAACAGCAGGAGGCCCGCAGCCTCTGGACCTGCCCCGAGGACAGAGAACCTGACAGCAGCACAGACATGGAACAGTACATGGAGGACCAGTACTGGCCCGATGACCTGGCCCACGGCAGCAGAGGAGGAGCCAGGGAGGCACAGGACAGAAGGAATTGAGAAGGGGGCGGGGCTCCCTGGCTGGGCTTCCGGTGTGGCCG|CATCTCTGAGGGTCCCCAAGGAACATGGCTGGGAGCCGTGAGGTGGTGGCCATGGACTGCGAGATGGTGGGGCTGGGGCCCCACCGGGAGAGTGGCCTGGCTCGTTGCAGCCTCGTGAACGTCCACGGTGCTGTGCTGTACGACAAGTTCATCCGGCCTGAGGGAGAG 10 0.286528554796887 0.273843590368178 0.373435270170926 Y Y 2.9380579477577595 3.5319270478477 2.9380579477577595 0 0.0 0.0 Y 0.0 N N 7733 484 ENSG00000181026 ENSG00000172183 + - 15 15 89175513 89199714 utr3p utr5p AEN ISG20 89164527 89179384 + + 0.0 89173566 89182574 + - N - - N SA469 1 0.0 1.0 1 0 2 N Y 0.0 0.0 12 1.58595318026503 1.27613907063186 1.58595318026503 1.27613907063186 4 - - 0.931506224088735 HCT116-unstranded 5.0 317485 TGTTCCATTGTGAGCTACCATGGCAATGTCCTCTATGACAAGTACATCAGGCCTGAGATGCCCATCGCTGACTACCGTACCCGCTGGAGTGGCATCACTCGGCAGCACATGCGCAAGGCTGTCCCCTTCCAGGTGGCCCAGAAAGAGA|TCCTGCAGCTCCTGAAAGGCAAGCTGGTGGTGGGTCATGACCTGAAGCACGACTTCCAGGCACTGAAAGAGGACATGAGCGGCTACACAATCTACGACACGTCCACTGACAGGCTGTTGTGGCGTGAGGCCAAGCTGGACCACTGCAGGCGTGTCTCC 12 0.623999718572866 0.777100665278324 0.451657395008434 Y Y 3.4780843434859 3.35975787397237 3.35975787397237 0 0.0 0.0 Y 0.137952284532089 N Y 7733 484 ENSG00000181026 ENSG00000172183 + - 15 15 89175513 89199714 coding coding AEN ISG20 89164527 89179384 + + 0.0 89169980 89195341 + - N - - N SA469 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 14 1.20237380643348 1.1802442271739702 1.20237380643348 1.1802442271739702 4 - - 0.9870114830054008 HCT116-unstranded 5.0 131989 AGAGCCAGGCAGGGGGATGAACCGCGAGGGAGCTCCCGGGAAGAGTCCGGAGGAGATGTACATTCAGCAGAAGGTCCGAGTGCTGCTCATGCTGCGGAAGATGGGATCAAACCTGACAGCCAGCGAGGAGGAGTTCCTGCGCACCTATGCAGGGGTGGTCAACAGCCAGCTCAGCCAGCTGCCTCCGCACTCCATCGACCAGG|TTAACAAGCACAAGCCCTGGCTGGAGCCCACCTACCACGGCATAGTCACAGAGAACGACAACACCGTGCTCCTCGACCCCCCACTGATCGCGCTGGATAAAGATGCGCCTCTGCGATTTGCAGAGAGTTTTGAGGT 3 0.758561380306948 0.501381625588523 0.337643627144711 Y Y 3.28183900123616 3.41848849077886 3.28183900123616 0 0.8973615916955021 0.0 Y 0.0 N Y 837 14957 ENSG00000178585 ENSG00000171603 + - 1 1 9970394 9884584 coding coding CTNNBIP1 CLSTN1 9908334 9789084 - - 0.0 9931245 9833452 - + N - - N SA469 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 8 1.29826864989137 0.9146892760598292 1.29826864989137 0.9146892760598292 4 - - 0.96255794072226 HCT116-unstranded CGHSA0344 5.0 1850 GAATGTCTCTTCTTCTTTCGGAGGCAGACAGCTTCATCGGGCCACAGAACCTGAGAGTTGGGAAGCTGCTGAGTCTGGGAGGCAGAATCGTCGGATCGTTTCTTTGACTTCGAAGAGCCCTTGGATGACTTTTTGGGCTTCTTTATCCGTTGGTATTTCAGAGCCTCCAGCCTCTCAGGCGCAGCAGCGTTCCCGGGTGCAGGTGGAAGTGTTC|CTGAAGTAGGTAACGTGGGTGGTGGGGTCTCCGGTCGGAGCAATTCCTCCCCCGTCCTTCGAGGGGAAGGCGTCTGTCCAAACACGTCCAAGCTGTCCCCAGGCCCAGCAGGGGCGGGGCCGGGTGGAGGGGAAGGGTAGCCGGTGGCCAGAGTGGTGAAGCCC 2 0.17863043304750506 0.293607295012227 0.5 Y Y 3.29400764533596 3.23057053032324 3.23057053032324 0 0.0 0.0 Y 0.0 N Y 79 524 ENSG00000254918 ENSG00000080854 - + 11 11 133782257 133826880 intron coding RP11-259P6.1 IGSF9B 133778459 133785185 - - 0.0 133781902 133789637 + - N - 0.462575583947986 N SA469 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 5 1.02533717235739 0.8999362232201541 1.02533717235739 0.8999362232201541 4 - 0.6 0.916255396415861 HCT116-unstranded 5.0 336171 CTGGTAGGGGTCCCTCTCGCAGAGCCTATCCACGAGCTCCTTCACTCCCTCCTTGTCAGGCACCAGAGACTGGTCCTGGTCATCTGCCAGCGGGGTTCCTGCCTGGCGGTAGATGCAGCGCACCGTGTAGCGCACTTCTGACCAGTAGTTCTGCAGCTGCTGAGGTTCCCGGTCCGCCTCTGCCGAAATTTCT|CACTGGCTGGTCAAGGCCGCCATGCCTCTCCTCCTTCTCCACGGTCCTGCGGCAGTCCGGGCACACCCACAGTGGCAGGTGCAGCACGCTGTTGCCCTTGGGAGCCATGGAAAGGGCCAATTTGCTCGCAGTCTTAATTCCACTCTCTAAGAATGATGAGTCTTTCCGTTCACTTCTGCACAGAAGACAATAATCCCCAGC 16 0.869096637170271 0.3810244767887921 0.2705114994275 Y Y 3.4655144718019804 3.41525614272 3.41525614272 6 0.994831770184298 0.0 Y 0.0 N N 1563 12942 ENSG00000125386 ENSG00000063978 - + 4 4 2734292 2627047 utr5p utr3p FAM193A RNF4 2626988 2463947 + + 0.0 2628137 2598056 - + N - 27.5740810360104 N SA469 1 0.0 1.0 1 0 1 N Y 0.0 0.0 27 1.35728086125007 1.46055223112779 1.46055223112779 1.35728086125007 4 - 2.88888888888889 0.930343509047058 HCT116-unstranded 5.0 208246 CTGGCACAGAATAAATGCTTTGGGGCGCCTGACACTGATCACACTACCCCTGCCCTCCTGAGGCTCCACATCTATGTATCCCATGGAAACCAGAGTCACAAATGGAGACAGATTCAGAGACTCAGCCTGAAAGGAGACAGAAGAGGCCGAGAGCTACAGGTTGCATGGCCCAGGATGGCAAAG|ACTCCACGGTTAATATCACAGCAGCTGGACAGAGACAAGAGCAGAGTCAGGCATCCTGGGCTGGCAGCTGCCTGTTGGGACTACACAGCCCCAAGCCAGCTCCCTGTCTCCCTAGGCAGAACACACGTTGGCAGAGACACTTGCTTTCTCCTCTGGCTGTTTCAAGCACTGGCCTAAGAGGTGGGGACTTGGGA 15 1.0 0.568497498425689 0.604761872323046 Y Y 3.46977054206091 3.72824693801095 3.46977054206091 0 0.0 0.0 Y 0.0 N N 1796 524 ENSG00000196155 ENSG00000135740 - + 16 16 67323402 67306093 utr5p coding PLEKHG4 SLC9A5 67311413 67271586 + + 0.0 67311497 67300014 - + N - 0.135361663486635 N SA469 1 0.102702702702703 1.0 1 0 2 N Y 0.102702702702703 0.0 16 1.36465738766991 1.34990433483023 1.36465738766991 1.34990433483023 4 - 0.8125 0.98975341396599 HCT116-unstranded 5.0 208247 AGACCGCGCGCCTCACCCGCGGCGTCGCAGTGCGTGGGTTGGGGCAGCGACCAACGGTCGGCAGCTCCACCGTGCCCACTCCCCGGGCCTGGCGAGGACGCCGGAAGCGCTCTCCCGCCAGGAAGGCCGCGTGGGTGAGCGAGG|ACTCCACGGTTAATATCACAGCAGCTGGACAGAGACAAGAGCAGAGTCAGGCATCCTGGGCTGGCAGCTGCCTGTTGGGACTACACAGCCCCAAGCCAGCTCCCTGTCTCCCTAGGCAGAACACACGTTGGCAGAGACACTTGCTTTCTCCTCTGGCTGTTTCAAGCACTGGCC 15 1.0 0.6239753564280239 0.604761872323046 Y Y 3.31592438821476 3.72824693801095 3.31592438821476 0 0.0 0.0 Y 0.0 N N 1796 524 ENSG00000196155 ENSG00000135740 - + 16 16 67323402 67306093 utr5p coding PLEKHG4 SLC9A5 67311413 67271586 + + 0.0 67313052 67300014 - + N - 0.135361663486635 N SA469 1 0.0 1.0 1 0 2 N Y 0.0 0.0 7 0.944195381739178 1.23187991211283 1.23187991211283 0.944195381739178 4 - 1.85714285714286 0.9919444305317472 HCT116-unstranded 5.0 253545 GTCTCCGTTTTCATCTTCCAGTGATGCCTGAAAACTCACCATCTGAAAGGGAATCAGGCCTGTAGCTCGGATATGCACTGGCTCATCAACAAGTGCACTCACAGGGGTAGCTGTCAACTGGATCATTTTTTTAGTGTGGCACCTGGGATGATTCTTCAGGAATATCTTCAGCAAAACCTCAAAACC|CTGCACATCTGGTGGAGTCTGGAGTTAGGGACTACATGACCCAAGTCATCAGCTAAATGAGCCAGAAGATTGAACTTTAGACGACTATCTTCCAGGGAGATGTCTTGCCAATTACTAGGAAGAGATGAACCAAAAACTTCTTT 20 0.778686374675711 0.54212557061869 0.368769066659326 Y Y 3.48912663185998 3.51207644450867 3.48912663185998 3 0.0 0.0 Y 0.0 N Y 3931 563 ENSG00000136881 ENSG00000136897 - + 9 9 104145801 104160896 utr5p coding BAAT MRPL50 104122699 104149915 - - 0.0 104133745 104152859 + - N - 0.193980284518886 N SA469 3 0.0 1.45 1 7 2 Y Y 0.0 0.0 20 1.3941634933492602 1.05484327803674 1.3941634933492602 1.05484327803674 4 - 6.6 0.943523846126751 HCT116-unstranded 5.0 253546 TAAAACATGTCTCCGTTTTCATCTTCCAGTGATGCCTGAAAACTCACCATCTGAAAGGGAATCAGGCCTGTAGCTCGGATATGCACTGGCTCATCAACAAGTGCACTCACAGGGGTAGCTGTCAACTGGATCATTTTTTTAGTGTGGCACCTGGGATGATTCTTCAGGAATATCTTCAGCAAAACCTCAAA|ACCTGAATCGAGACCAAAATTCTCTACATGGTGTCCCTGAGACTGTCCACATGAAGACTCTTCTGGTAATGCCCGACACAGATCGCGCCGCCATCTTCGATGAGATCCACGGGCCTGAGCGCAGCCTTCAGCCAGCAGTGACGCGCCCAGACCAG 77 0.7977816688121079 0.5097711021615839 0.20281168116580106 Y Y 3.44615838200292 3.6035982586987 3.44615838200292 0 0.0 0.0 Y 0.0 N Y 3931 563 ENSG00000136881 ENSG00000136897 - + 9 9 104145801 104160896 utr5p intron BAAT MRPL50 104122699 104149915 - - 0.0 104133745 104160783 + - N - 0.348814325222417 N SA469 2 0.0 1.33658536585366 1 69 2 N Y 0.0 0.0 205 1.4015400197690902 1.15811464791446 1.4015400197690902 1.15811464791446 4 - 0.570731707317073 0.909796412912628 HCT116-unstranded 5.0 336214 AAAAAGGAATTGCAGTGCAACAAAGTACGTGAAAATCAGGTTTCAATAGAATGTGACACAACGTGCAAGGAAATGAAGCGGAAAGCATCTGAGATAAAAGAAGCAGAAGCCAAAGCTGCTCTTGAAGAAGAAAAACGAAGACAACA|GGTCTTGAGAGCTGATGACAATAACATGGGCAATGGCTGCTCTCAGAAGCTGGCGACTGCTAACCTCCTCCGGTTCCTATTGCTGGTCCTGATTCCATGTATCTGTGCTCTCGTTCTCTTGCTGGTGATCCTGCTTTCCTATGTTGGAACATTACAAAAGGTCTATTTTAA 33 1.0 0.71607998443499 0.6939954881329921 N Y 3.1291192031157298 3.5465630590714 3.1291192031157298 0 0.9658611182906872 0.0 Y 0.0 N Y 461 350 ENSG00000170448 ENSG00000145244 + - 4 4 47916653 47840123 coding coding NFXL1 CORIN 47849257 47596015 - - 0.0 47853112 47809064 - + N - - N SA469 1 0.0 1.0 1 0 1 Y N 0.0 0.0 19 1.05484327803674 1.1802442271739702 1.1802442271739702 1.05484327803674 4 - - 0.9726835828568609 HCT116-unstranded CGHSA0792 5.0 335780 AGTGACCAAAGGTTCACTCCCATTTGATTTAAAATAGACCTTTTGTAATGTTCCAACATAGGAAAGCAGGATCACCAGCAAGAGAACGAGAGCACAGATACATGGAATCAGGACCAGCAATAGGAACCGGAGGAGGTTAGCAGTCGCCAGCTTCTGAGAGCAGCCATTGCCCATGTTATTGTCATCAGCTCTCAAG|ACCTGTTGTCTTCGTTTTTCTTCTTCAAGAGCAGCTTTGGCTTCTGCTTCTTTTATCTGTTTATACACATACAAAAGTCAATTTACAATTTAGTCATCACATTTTATATGGAATTTTAACATCTACCCATCCAGGTTCTATTAACCCATATCAACTTTTAG 22 1.0 0.6696941193347861 0.6012273316502671 N Y 3.44143830342756 3.3112577428018906 3.3112577428018906 1 0.993806169540928 0.0 Y 0.0 N Y 350 461 ENSG00000145244 ENSG00000170448 - + 4 4 47840123 47916653 coding intron CORIN NFXL1 47596015 47849257 - - 0.0 47809064 47853112 + - N - 0.233788153832617 N SA469 1 0.0 1.0 1 0 1 N N 0.0 0.0 8 1.37203391408974 1.20237380643348 1.37203391408974 1.20237380643348 4 - 0.375 0.9805975981117968 HCT116-unstranded CGHSA0792 5.0 317459 GTGTTTCATTGCTGTACATTGGCTGGGATAAGCACTATGGCTTTCAGCTCTATCAGAGTGACCCTAGTGGAAATTACGGGGGATGGAAGGCCACATGCATTGGAAATAATAGCGCTGCAGCTGTGTCAATGTTGAAACAAGACTATAAAGAAGGAGAAATGACCTTGAAGTCAGCACTTGCTTTAGCTATCAAAGTACTAAATAAGACCATGGATGTTAGTAAACTCTCTGCTGAAAA|AGGATTATCTGAACCTTCTTCTATTGCAAAACATGAAGATAGTTTGCTTAAGGATTTATTTCAAGACTACGAAAGATGGGTTCGTCCTGTGGAACACCTGAATGACAAAATAAAAATAAAATTTGGACTTGCAATATCTCAATTGGTGGATGTGGATGAGAAAAATCAGTTAATGACAACAAACGTCTGGTTGAAACAGGAATGGATAGATGTAAAATTAAGATGGAACCCTGATGACTATGGTGGAATAAAAGTTATACGT 8 1.3365759360030901e-05 0.313295551143933 0.800790208254698 Y Y 3.5167965230840297 3.5827145855897897 3.5167965230840297 0 0.0 0.0 Y 0.0 N Y 9640 716 ENSG00000041357 ENSG00000169684 + - 15 15 78841604 78887611 coding coding PSMA4 CHRNA5 78832747 78857862 + + 0.0 78839040 78873153 + - N - - N SA469 1 0.0 1.0 1 0 3 Y Y 0.0 0.0 7 1.30564517631121 1.4015400197690902 1.4015400197690902 1.30564517631121 4 - - 0.941958521005057 HCT116-unstranded 5.0 317540 AATAGCGCTGCAGCTGTGTCAATGTTGAAACAAGACTATAAAGAAGGAGAAATGACCTTGAAGTCAGCACTTGCTTTAGCTATCAAAGTACTAAATAAGACCATGGATGTTAGTAAACTCTCTGCTGAAAAA|GGATGAGAAAAATCAGTTAATGACAACAAACGTCTGGTTGAAACAGGAATGGATAGATGTAAAATTAAGATGGAACCCTGATGACTATGGTGGAATAAAAGTTATACGTGTTCCTTCAGACTCTGTCTGGACACCAGACATCGTTTTGTTTGATAATGCAGATGGACGTTTTGAAGGGACCAGTACGAAAACAGTCATCAGGTACAATGGCACTGTCACCTGGACTCCACCGGCAAACTACAAAAGTTCCTGTACCATAGATGTCACGTTTTTCCCATTTGACCTTCAGAACTGT 4 2.7535932630849e-05 0.728834169045181 0.686331877203209 Y Y 3.46448140203209 3.4780843434859 3.46448140203209 0 0.0 0.0 Y 0.0 N Y 9640 716 ENSG00000041357 ENSG00000169684 + - 15 15 78841604 78887611 coding coding PSMA4 CHRNA5 78832747 78857862 + + 0.0 78839040 78878987 + - N - - N SA469 1 0.0 1.0 1 0 3 Y Y 0.0 0.0 8 0.8778066439606421 0.759782221243245 0.8778066439606421 0.759782221243245 4 - - 0.980493998053108 HCT116-unstranded 5.0 317462 TGGAAATAATAGCGCTGCAGCTGTGTCAATGTTGAAACAAGACTATAAAGAAGGAGAAATGACCTTGAAGTCAGCACTTGCTTTAGCTATCAAAGTACTAAATAAGACCATGGATGTTAGTAAACTCTCTGCTGAAAA|AGGATTATCTGAACCTTCTTCTATTGCAAAACATGAAGATAGTTTGCTTAAGGATTTATTTCAAGACTACGAAAGATGGGTTCGTCCTGTGGAACACCTGAATGACAAAATAAAAATAAAATTTGGACTTGCAATATCTCAATTGGTGGATGTGGATGAGAAA 8 0.504961176610494 0.313295551143933 0.800790208254698 Y Y 3.5167965230840297 3.5827145855897897 3.5167965230840297 0 0.0 0.0 Y 0.0 N Y 9640 716 ENSG00000041357 ENSG00000169684 + - 15 15 78841604 78887611 coding coding PSMA4 CHRNA5 78832747 78857862 + + 0.0 78839040 78873153 + - N - - N SA469 1 0.0 1.0 1 0 3 Y Y 0.0 0.0 7 0.9146892760598292 0.951571908159015 0.951571908159015 0.9146892760598292 4 - - 0.980650783998874 HCT116-unstranded 5.0 317541 TGATATCAAACAAGCTTATACACAATTTGGAGGAAAACGTCCCTTTGGTGTTTCATTGCTGTACATTGGCTGGGATAAGCACTATGGCTTTCAGCTCTATCAGAGTGACCCTAGTGGAAATTACGGGGGATGGAAGGCCACATGCATTGGAAATAATAGCGCTG|ATGAGAAAAATCAGTTAATGACAACAAACGTCTGGTTGAAACAGGAATGGATAGATGTAAAATTAAGATGGAACCCTGATGACTATGGTGGAATAAAAGTTATACGTGTTCCTTCAGACTCTGTCTGGACACCAGACATCGTTTTGTTTGATAATGCAGATGGACGTTTTGAAGGGACCAGTACGAAAACAGTCATCAGGTACAATGGCACTGTCACCTGGACTCCACCGGCAAACTACAAAAGTTCCTGTACCATAGATGTCACGTTTTTCCCATTTGACCTTCAGAACTGTTCCATGAAATTT 8 2.2271429279934998e-08 0.954827540064652 0.91167016021036 Y Y 3.4048855493250496 3.42936294528359 3.4048855493250496 0 0.0 0.0 Y 0.0 N Y 9640 716 ENSG00000041357 ENSG00000169684 + - 15 15 78841604 78887611 coding coding PSMA4 CHRNA5 78832747 78857862 + + 0.0 78838106 78878987 + - N - - N SA469 1 0.0 1.0 1 0 3 Y Y 0.0 0.0 7 1.08434938371609 1.07697285729625 1.08434938371609 1.07697285729625 4 - - 0.948534747937992 HCT116-unstranded 5.0 381723 AACTTCCGCTTCCGGTTCCTAGCGTTAACTGCGACCGGGGTTCAGCGCTCGGGTGAGGAGCTGGTGGCGTCGGCAGGTTCGAGGCGATTCGA|GGCCGAGTGTACTACTTCAACCACATCACTAACGCCAGCCAGTGGGAGCGGCCCAGCGGCAACAGCAGCAGTGGTGGCAAAAACGGGCAGGGGGAGCCTGCCAGGGTCCGCTGCTCGCACCTGCTGGTGAAGCACAGCCAGTCACGGCGGCCCTCGTCCTGGCGGCAGGAGAAGATCACCCGGACCAAGGAGGAGGCCCTGGAGCTGATCAACGGCT 65 1.0 0.41454706032055 0.609820850111145 N Y 3.38184245072052 3.762733552573681 3.38184245072052 0 0.0 0.0 Y 0.0 N Y 5293 2845 ENSG00000198258 ENSG00000127445 + - 19 19 9940791 9960358 utr5p intron UBL5 PIN1 9938568 9945933 + + 0.0 9938660 9949112 + - N - - N SA469 1 0.0 1.0 1 0 1 N N 0.0 0.0 43 0.582745587167149 1.3203982291508798 1.3203982291508798 0.582745587167149 4 - - 0.979516888482354 HCT116-unstranded 5.0 379361 AGCTCTCCTGTCGCCCAGCGTATCACTGCCCAGGTGCACGGTGTACTCATTCATCTTGCAGTGGGCGGCAGTGAGCACCCAGCGCTCATTGACCAGGACGCCTCCGCAGTGGAGCTGATTGCCACTGAGCAGGGCCACCTGCCATGGGTGGGAGCCTCTTGCACATGGGGCGCCATCAATAATCTTGTCACCCTGGGCT|GCCCAGGCTCCCCCCAGCAAGAGCAGGAACATCCACGTCTTGGCCGCACGAGGTCGGGGGCGTCCCATGGTGAGGTCTGGGAAATGGAGAGGGCGGGGCCGGTAAACAGGAAGGAGGAGC 23 1.0 0.27763938098456603 0.412215116545826 Y Y 3.44615838200292 3.30232144676095 3.30232144676095 0 0.991692708333333 0.0 Y 0.0 N Y 1312 434 ENSG00000169035 ENSG00000129455 - + 19 19 51487320 51504958 coding coding KLK7 KLK8 51479729 51499264 - - 0.0 51485170 51504354 + - N - 1.51212902011941 N SA469 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 18 0.8778066439606421 0.715523062724221 0.8778066439606421 0.715523062724221 4 - 10.1111111111111 0.9627117311321388 HCT116-unstranded 5.0 381296 GGATTCTGGAAGACCTCACCATGGGACGCCCCCGACCTCGTGCGGCCAAGACGTGGATGTTCCTGCTCTTGCTGGGGGGAGCCTGGGCA|GTGACCTTTCCCTCTGACCTCATGTGCGTGGATGTCAAGCTCATCTCCCCCCAGGACTGCACGAAGGTTTACAAGGACTTACTGGAAAATTCCATGCTGTGCGCTGGCATCCCCGACTCCAAGAAAAACGCCTGCAATGGTGACTCAGGGGGACCGTTGGTGTGCAGAGGTACCCTGCAAGGTCTGGTGTCCTGGGGAACTT 7 0.6046966411604361 0.281087349189267 0.505342359760489 Y Y 3.3536034980430003 3.55231620741665 3.3536034980430003 0 0.988802524241958 0.0 Y 0.00342465753424659 N Y 434 1312 ENSG00000129455 ENSG00000169035 + - 19 19 51504958 51487320 coding coding KLK8 KLK7 51499264 51479729 - - 0.0 51504354 51483180 - + N - - N SA469 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 5 0.951571908159015 0.88518317038048 0.951571908159015 0.88518317038048 4 - - 0.943964861271519 HCT116-unstranded 5.0 225638 GGATCACTTGGATTAGGAACTGGAGAAGATGATGACTATGTTGATGATTTTAATAGTACCAGCCATCGCTCAGAGAAAAGTGAGATAAGTATTGGTGAAGAGATAGAAGAAGACCTTTCTGTGGAAATAGATGACATCAATACCAGTGATAA|GAGTCACCTCTACTTTCCTGCTACCGCTGCCTGTGAGCTGAAGGGGCTGAACCATACACTCCTTTTTCTACAACCAGCTTGCATTTTTTCTGCCCACAATGAGCGGGGAATCAATGAATTTCAGCGATGTTTTCGACTCCAGTGAAGATTATTTTG 1 0.453626206725144 0.7590440313133159 0.8458176114017901 Y Y 3.56232542602083 3.37758638046158 3.37758638046158 0 0.993442343723386 0.0 Y 0.232754215636178 N Y 315 1822 ENSG00000213066 ENSG00000112486 + - 6 6 167455906 167553184 coding utr5p FGFR1OP CCR6 167412670 167525295 + + 0.0 167447459 167549526 + - N - - N SA469 1 0.0 1.0 1 0 7 N Y 0.0 0.0 7 0.8040413797622691 0.826170959021781 0.826170959021781 0.8040413797622691 4 - - 0.9863067409955748 HCT116-unstranded CGHSA0270 5.0 223566 GCGTCGGCCGCGTAGCCCGCGCGCGGAGCGTACCCTGCTGCGGCCGTTGGCCGTTAGCGCGGCTTCGGCGGTTGTCTTGGAGAAGCAAGATGGCGGCGACGGCGGCCGCAGTGGTGGCCGAGGAGGACACGGAGCTGCGGGACCTGCTGGTGCAGACGCTGGAGAACAGCGGGGTCCTGAACCGCATCAAGGCTGAACTCCGAGCAGCTGTGTTTTTAGCACTAGAGGAGCAAGAAAAAGTAGA|GAGTCACCTCTACTTTCCTGCTACCGCTGCCTGTGAGCTGAAGGGGCTGAACCATACACTCCTTTTTCTACAACCAGCTTGCATTTTTTCTGCCCACAATGAGCGGGGAATCAATGAATTTCAGCGATGTTTTCGACTCCAGT 21 0.174095610044888 0.64037532596664 0.59509469366936 Y Y 3.15934974741952 3.37758638046158 3.15934974741952 0 0.993025016220893 0.0 Y 0.0 N Y 315 1822 ENSG00000213066 ENSG00000112486 + - 6 6 167455906 167553184 coding utr5p FGFR1OP CCR6 167412670 167525295 + + 0.0 167413601 167549526 + - N - - N SA469 1 0.0 1.0 1 0 7 N Y 0.0 0.0 34 1.45317570470795 1.04009022519706 1.45317570470795 1.04009022519706 4 - - 0.981672508255465 HCT116-unstranded CGHSA0270 5.0 223567 CGACGGCGGCCGCAGTGGTGGCCGAGGAGGACACGGAGCTGCGGGACCTGCTGGTGCAGACGCTGGAGAACAGCGGGGTCCTGAACCGCATCAAGGCTGAACTCCGAGCAGCTGTGTTTTTAGCACTAGAGGAGCAAGAAAAAGTAGA|GAGTCACCTCTACTTTCCTGCTACCGCTGCCTGTGAGCTGAAGGGGCTGAACCATACACTCCTTTTTCTACAACCAGCTTGCATTTTTTCTGCCCACAATGAGCGGGGAATCAATGAATTTCAGCGATGTTTTCGACTC 21 0.19793657508829 0.64037532596664 0.59509469366936 Y Y 3.15934974741952 3.37758638046158 3.15934974741952 0 0.992830735411671 0.0 Y 0.0 N Y 315 1822 ENSG00000213066 ENSG00000112486 + - 6 6 167455906 167553184 coding utr5p FGFR1OP CCR6 167412670 167525295 + + 0.0 167413601 167549526 + - N - - N SA469 1 0.0 1.0 1 0 7 N Y 0.0 0.0 6 0.8187944326019441 0.9589484345788531 0.9589484345788531 0.8187944326019441 4 - - 0.985566257554296 HCT116-unstranded CGHSA0270 5.0 224794 CCGTTGGCCGTTAGCGCGGCTTCGGCGGTTGTCTTGGAGAAGCAAGATGGCGGCGACGGCGGCCGCAGTGGTGGCCGAGGAGGACACGGAGCTGCGGGACCTGCTGGTGCAGACGCTGGAGAACAGCGGGGTCCTGAACCGCATCAAGGCTGAACTCCGAGCAGCTGTGTTTTTAGCACTAGAGGAGCAAGAAAAAGTAGAG|GCCTGCCCCACAGGGCTGTCACTTGGAGGTGCTGCACGTGGTTCCACCCTGTGGGGTACCAGGGAGAGGAAAGAACAGAGCAAACTGGACACCAGAACCAGAAGGCTTCGCTCAGAAGTGCACACATTGCCTTCGTCTCAGTAAATTAGCAGAGCAAGTCCTG 4 0.27797733770513394 0.452572625059155 0.8796509094363492 Y Y 3.11385134970626 3.369767092576549 3.11385134970626 0 0.993881792886118 0.0 Y 0.0 N N 315 1822 ENSG00000213066 ENSG00000112486 + - 6 6 167455906 167553184 coding upstream FGFR1OP CCR6 167412670 167525295 + + 0.0 167413601 167492214 + - N - - N SA469 1 0.0 1.0 1 0 7 N Y 0.0 0.0 5 1.02533717235739 1.21712685927316 1.21712685927316 1.02533717235739 4 - - 0.937368498541539 HCT116-unstranded CGHSA0270 5.0 381980 CGGGGCCCAGCCAAGGCCAGTCCCCAGCCAGCACTGACTGTCAAAGCCAAGGCCACAAGCTCAGCGACAACGGCTGCTGCCCCGACACTGCGGCGCCTGGCGCTTTCCTCACGGTCTGGGCTTGAGAGGAAGCCGGAGTCCTTGTCTAAAGTCAGCATCATCAAGAGACTGGGCGCAGCTGCCCTTGTGCCCGAGGCCCAGGACAGCCAGGTCACCAGCACCAAGAGT|GAATACATCAAGACCTGGAGGCCACGGTACTTCCTGCTGAAGAGCGACGGCTCCTTCATTGGGTACAAGGAGAGGCCCGAGGCCCCTGATCAGACTCTACCCCCCTTAAACAACTTCTCCGTAGCAGAATGCCAGCTGATGAAGACCGAGAGGCCGCGACCCAACACCTTTGTCATACG 9 0.5868382591472211 0.905778604861768 0.366736115076675 N Y 3.0867335950812698 3.87464452633266 3.0867335950812698 1 0.0 0.0 Y 0.0 N Y 1892 8024 ENSG00000160392 ENSG00000105221 + - 19 19 40854434 40791443 coding coding C19orf47 AKT2 40825443 40736224 - - 0.0 40827935 40762961 - + N - - N SA469 1 0.0 1.0 1 0 1 Y N 0.0 0.0 15 1.56382360100551 1.33515128199056 1.56382360100551 1.33515128199056 4 - - 0.94294260832391 HCT116-unstranded 5.0 275570 CCGGCCCTTCACCAGCAGCCCGTCCGACTGGAAAGATCTGCCTCTTCTCCAAGAAACTCAACCACTAGTGACAATGACCAGCCTCCTGACTACTCCTTCTCCAAGA|GGTCATCGTGATGTCAGGTCATGAGACCATCCGAGTGCTGGAAGTCGGAGTGGATGCCCAACTCCCTGCTGAGGAAGAGAGCAAAGGACTGGAGGGTGTGGCCGCCGAGGGCTCCCAGAGCGGAGACCCTGCTGAAGCCAGTCAAGCTGCTGGTGAAGCTGGGCCAGACAACC 11 0.111207092521625 0.64753048881959 0.796771823294445 Y Y 3.55760534744548 3.50120199000394 3.50120199000394 0 0.990599730458221 0.0 Y 0.0 N Y 918 691 ENSG00000170545 ENSG00000184271 + - 12 12 51664202 51611477 coding utr5p SMAGP POU6F1 51639133 51580719 - - 0.0 51663029 51598151 - + N - - N SA469 1 0.0 1.0 1 0 1 N Y 0.0 0.0 6 0.8187944326019441 1.15811464791446 1.15811464791446 0.8187944326019441 4 - - 0.942658875573657 HCT116-unstranded 5.0 58924 GGCAGATGTATAAGAAGGCAGAGGCTTCCTTTTGGACCGCCGAGGAGGTGGACCTCTCCAAGGACATTCAGCACTGGGAATCCCTGAAACCCGAGGAGAGATATTTTATATCCCATGTTCTGGCTTTCTTTGCAGCAAGCGATGGCATAGTAAATGAAAACTTG|TCTTCCAGGATCTCAACCAGTTCTCTCACTGCAGAGTCTGGAGAAGCCCAGCCCTCATTGTGAAGGGAGAGCCACCGTGGTGCTCACAGCAAGACACCCAGAGTCCCTTCCAGACAGGGACACCCCTGGAGCGACCCTGTTTCAGAATGAAGTTATCTGGGTGGGAACTCACCAAGAATG 8 1.0 0.8918574835362059 0.87658750254332 Y Y 3.48639814491089 3.4618274629965096 3.4618274629965096 2 0.993920113114175 0.0 Y 0.0 N Y 21869 1405 ENSG00000171848 ENSG00000163009 + - 2 2 10271545 10351851 coding coding RRM2 C2orf48 10262455 10281509 + + 0.0 10263979 10350437 + - N - - N SA469 2 0.0 1.28571428571429 1 2 5 N Y 0.0 0.0 7 1.1064789629756 1.27613907063186 1.27613907063186 1.1064789629756 4 - - 0.916825884702772 HCT116-unstranded CGHSA0554 5.0 58927 CTTGGTGGAGCGATTTAGCCAAGAAGTTCAGATTACAGAAGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAACATACATTCTGAAATGTATAGTCTTCTTATTGACACTTACATAAAAGATCCCAAAGAAAG|TCTTCCAGGATCTCAACCAGTTCTCTCACTGCAGAGTCTGGAGAAGCCCAGCCCTCATTGTGAAGGGAGAGCCACCGTGGTGCTCACAGCAAGACACCCAGAGTCCCTTCCAGACAGGGACACCCCTGGAGCGA 5 0.0852392803371218 0.373132694159277 0.7493143593750391 Y Y 3.35769173443259 3.4618274629965096 3.35769173443259 2 0.985129298562134 0.0 Y 0.0 N Y 21869 1405 ENSG00000171848 ENSG00000163009 + - 2 2 10271545 10351851 coding coding RRM2 C2orf48 10262455 10281509 + + 0.0 10264977 10350437 + - N - - N SA469 3 0.0 2.8 2 5 5 N Y 0.0 0.0 5 0.8778066439606421 0.752405694823408 0.8778066439606421 0.752405694823408 4 - - 0.912375776863858 HCT116-unstranded CGHSA0554 5.0 58928 GAGATGAGGGTTTACACTGTGATTTTGCTTGCCTGATGTTCAAACACCTGGTACACAAACCATCGGAGGAGAGAGTAAGAGAAATAATTATCAATGCTGTTCGGATAGAACAGGAGTTCCTCACTGAGGCCTTGCCTGTGAAGCTCATTGGGATGAATTGCACTCTAATGAAGCAATACATTGAGTTTGTGGCAGACAGACTTATGCTGGAACTGGGTTTTAGCAAGGT|GCTGGGAGACCGTGAAGTGCAAAGCAGATGGAGTCCAGGCCCTCGGGGAGACAGCACGCCAGTGAGGGAGATGGAGACCAATCACCCACCCAGTGTGCGGGGATGAGAAGCTCGGGAAGGTCTGACCAGCCTTACGTCTTGAAAGGGAATCCCCTGCTTCTGCGTGTCAGGTGTTACTCGGGGT 168 0.888881722265108 0.680903715841108 0.539661963748409 Y Y 3.51360402781852 3.44040523365767 3.44040523365767 1 0.962048414198698 0.0 Y 0.425304557865995 N Y 21869 1405 ENSG00000171848 ENSG00000163009 + - 2 2 10271545 10351851 coding utr5p RRM2 C2orf48 10262455 10281509 + + 0.0 10269281 10281981 + - N - - N SA469 2 0.528795811518325 1.32307692307692 1 42 5 N Y 0.0 0.528795811518325 130 1.57120012742535 1.40891654618893 1.57120012742535 1.40891654618893 4 - - 0.935262853906797 HCT116-unstranded CGHSA0554 5.0 58929 TGCCCCCGGCGTGGAGGATGAGCCGCTGCTGAGAGAAAACCCCCGCCGCTTTGTCATCTTCCCCATCGAGTACCATGATATCTGGCAGATGTATAAGAAGGCAGAGGCTTCCTTTTGGACCGCCGAGGAGGTGGACCTCTCCAAGGACATTCAGCACTGGGAATCCCTGAAACCCGAGGAGAGATATTTTATATCCCATGTTCTGGCTTTCTTTGCAGCAAGCGATGGCATAGTAAATGAAAACTTGGTG|CTGGGAGACCGTGAAGTGCAAAGCAGATGGAGTCCAGGCCCTCGGGGAGACAGCACGCCAGTGAGGGAGATGGAGACCAATCACCCACCCAGTGTGCGGGGATGAGAAGCTCGGGAAGGTCTGACCAGCCTTACGTC 11 0.00324358959464255 0.8857459657673241 0.5629948744190151 Y Y 3.49744043328497 3.45297510534159 3.45297510534159 1 0.992719542478742 0.0 Y 0.0 N Y 21869 1405 ENSG00000171848 ENSG00000163009 + - 2 2 10271545 10351851 coding utr5p RRM2 C2orf48 10262455 10281509 + + 0.0 10263979 10281981 + - N - - N SA469 2 0.9733333333333328 1.125 1 1 5 N Y 0.0 0.9733333333333328 8 0.9958310666780392 0.5532394814878 0.9958310666780392 0.5532394814878 4 - - 0.96118282598321 HCT116-unstranded CGHSA0554 5.0 209604 CTGCAGGTCGCGCTCGTCCACCGGCATGCTGCGGCGGTGCAGCGGCGGGGCGGGGCCCCAGGGTGTGCTGCCCCGACGGCGCTCGCGCTCCTGGCCCCCACCGCGGCTCCCGCCCGCTCCGCTGCCGCCGCCGTTCAGGGTCATCGCGTCCGGGACCGT|CTGAACCCGCACCTGCTCTACTACGTTCAACTCCTCTAGCGTCAGTGGATGCTCCGGGTCATTGATGGAGCGAATCAGATGTGGGAAGTGAAGGAAAAGGGACTCTGCGCCCTTGCCCACTTAGAACCCTCTGCCAGGAACGCCCTGCTGGGATGCGGCTCCACCAGCTGCTCGATATCACTGCTCC 8 0.754785756133491 0.6101717781620961 0.734769817726035 Y Y 3.29078464484691 3.46079439322662 3.29078464484691 1 0.993728816631323 0.0 Y 0.0 N Y 296 3310 ENSG00000166592 ENSG00000166595 - + 16 16 66959547 66968326 utr5p coding RRAD FAM96B 66955582 66965959 - - 0.0 66959097 66967890 + - N 16.7321516545482 1.51053782697775 N SA469 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 9 1.18762075359381 1.12123201581527 1.18762075359381 1.12123201581527 4 0.222222222222222 161.555555555556 0.97685132800379 HCT116-unstranded CGHSA0477 5.0 209935 TGAACGTAGTAGAGCAGGTGCGGGTTCAGGTTAGCGACCCCGAGAGTACAGTGGCTGTGGCTTTCACACCAACCATTCCGCACTGCAGCATGGCCACCCTTATTGGTCTGTCCATCAAGGTCAAGCTTCTGCGCTCCCTTCCTCAGCGTTTCAA|GACGGTCCCGGACGCGATGACCCTGAACGGCGGCGGCAGCGGAGCGGGCGGGAGCCGCGGTGGGGGCCAGGAGCGCGAGCGCCGTCGGGGCAGCACACCCTGGGGCCCCGCCCCGCCGCTGCACCGCCGCAGCATGCCGGTGGACGAGCGCGACCTGCAG 9 0.7314218770909141 0.9221038557094658 0.265625679972827 Y Y 3.2829255041685297 3.30973015949204 3.2829255041685297 0 0.993527107812822 0.0 Y 0.980581323438466 N Y 3310 296 ENSG00000166595 ENSG00000166592 + - 16 16 66968326 66959547 coding utr5p FAM96B RRAD 66965959 66955582 - - 0.0 66967517 66959097 - + N - - N SA469 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 12 1.06221980445658 0.96632496099869 1.06221980445658 0.96632496099869 4 - - 0.930305916968983 HCT116-unstranded CGHSA0477 5.0 225820 TGGCTGGAGTTTGCTGGACACTTTCATTCCACCTCCTAACAAAGAGAATTCCTATTCCTTGAGGTCCCTTGGGGCAGCAGTTAAAGACTACACGATCCAGGAGCACCTAGGACCTGGGGCCACCTTCCTGCCCGCTTTATTGGATGGAGCACTGCCTCCCCAGTTTCTGGGACACCTTGGGGTGTGGCCTTG|AGACCTGTCGGCCATGGAGCCTAATGATAGTACCAGTACCGCTGTGGAGGAGCCTGACAGCTTGGAGGTGTTGGTGAAGACCTTGGACTCTCAAACTCGTACCTTTATTGTGGGGGCCCAGATGAATGTAAAAGAGTTTAAGGAGCACATTGCTGCCTCTGTCAGCATCCCATCTGAAAAACAACGGCTCATTTACCAGGGACGAGTTCT 10 0.768182923945077 0.992471140242937 0.7139086850664692 Y Y 3.18871505582277 3.762733552573681 3.18871505582277 4 0.0 0.0 Y 0.0 N N 1175 29435 ENSG00000204439 ENSG00000204463 + - 6 6 31628549 31620482 intron utr5p C6orf47 BAG6 31626075 31606805 - - 0.0 31628098 31619553 - + N - - N SA469 1 0.0 1.0 1 0 1 N Y 0.0 0.0 9 1.26876254421202 1.26876254421202 1.26876254421202 1.26876254421202 4 - - 0.960657779018462 HCT116-unstranded 5.0 132124 GGGAAGGCAGATGTATCTTTCGTTCTCTTTTTTGACTGTAATAATGAGATTTGTATTGAACGATGTCTTGAGAGGGGAAAGAGTAGTGGTAGGAGTGATGACAACAGAGAGAGCTTGGAAAAGAGAATTCAGACCTACCTTCAGTCAACAAAGCCAATTATTGACTTATATGAAGAAATGGGGAAAGTCAAGAAAATAGATGCTTCTAAATCTGTTGATGAA|CCCGCGCAAGTGGCAGAACAGCATCCGCCACAATCTCACGCTCAACGACTGCTTCGTCAAGGTGCCCCGCGAGCCGGGCAACCCGGGCAAGGGCAACTACTGGACGCTGGACCCCGCGGCCGCAGACATGTTCGACAACGGCAGCTTCCTGCGGCGCCGCAAGCGCTTCAAGCGCGCCGAGCTGCCCGCGCACGCGGCCGCGGCGCCAGGGCC 25 1.0 0.638139687976895 0.39014137837465296 N Y 3.25360004855864 3.4823005609514905 3.25360004855864 1 0.0 0.0 Y 0.0 N N 4418 397 ENSG00000162368 ENSG00000186790 + - 1 1 47844511 47883723 coding coding CMPK1 FOXE3 47799469 47881744 + + 0.0 47840965 47882320 + - N - 0.27270135150262 N SA469 4 0.14423076923076902 2.0 1 5 4 N N 0.0 0.14423076923076902 11 1.4900583368071398 1.5343174953261598 1.5343174953261598 1.4900583368071398 4 - 3.54545454545455 0.905853793167214 HCT116-unstranded 5.0 132126 GGGAAGGCAGATGTATCTTTCGTTCTCTTTTTTGACTGTAATAATGAGATTTGTATTGAACGATGTCTTGAGAGGGGAAAGAGTAGTGGTAGGAGTGATGACAACAGAGAGAGCTTGGAAAAGAGAATTCAGACCTACCTTCAGTCAACAAAGCCAATTATTGACTTATATGAAGAAATGGGGAAAGTCAAGAAAATAGATGCTTCTAAATCTGTTGATGAA|ATTTCGAGTCTTCATTTCTGTCTTGCCTGGAGCACTTGCTAAGGGACTGGCCCAGAAGTACTCGGTGAGCAATGAAGCCTGAACTGAGGCCAGGAGAACTGAAGGAGGGATGGATCTGGGACCCATGTGGAATTGACGGGACTTGGCACTTGCCTGAATGTGGAGAGTGAGTGGGGAGGAAGGAGC 12 0.478568792870373 0.752417712057029 0.520760238557034 N Y 3.25360004855864 3.4378445805779303 3.25360004855864 6 0.0 0.0131713857559744 Y 0.0238977837368876 N N 4418 397 ENSG00000162368 ENSG00000186790 + - 1 1 47844511 47883723 coding upstream CMPK1 FOXE3 47799469 47881744 + + 0.0 47840965 47879778 + - N - - N SA469 1 0.908045977011494 1.0 1 0 4 N N 0.0 0.908045977011494 7 1.18762075359381 1.20975033285332 1.20975033285332 1.18762075359381 4 - - 0.966520539619355 HCT116-unstranded 5.0 130881 GTGTGGATAAGAAATATTCAGCTTGGTTTCTTTGGAAGTATATTTGGATTAATGGGTGTATACATTTATGATGGAGAACTGGTATCAAAGAATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCA|GCCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTGGTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAACGGCTTAATT 8 0.542628185504602 0.658596909302427 0.832747560349523 N Y 3.73233517440054 3.6988816296077 3.6988816296077 0 0.0 0.0 Y 0.0103937158731682 N Y 732 3289 ENSG00000117620 ENSG00000156875 + - 1 1 100492535 100548933 coding coding SLC35A3 HIAT1 100435345 100503653 + + 0.0 100480976 100515465 + - N - - N SA469 1 0.0 1.0 1 0 1 Y N 0.0 0.0 10 0.7892883269225942 0.9810780138383648 0.9810780138383648 0.7892883269225942 4 - - 0.9588136736235892 HCT116-unstranded 5.0 393759 CGCCGCCACCCGCCTCCCACCATGGCTCTGAAGAGAATCCACAAGGAATTGAATGATCTGGCACGGGACCCTCCAGCACAGTGTTCAGCAGGTCCTGTTGGAGATGATA|AGTGAAGACATTTCCACCTGGACACCTGACCATGTGCCTGCCCTGAGCAGCGAGGCCCACCAGGCATCTCTGTTGTGGGCAGCAGGGCCAGGTCCTGGTCTGTGGACCCTCGGCAGTTGGCAGGCTCCCTCTGCAGTGGGGTCTGGGCCTCGGCCCCACCATGTC 9 0.0174778286368954 0.7225141929417901 0.556774571809435 Y Y 3.65760879692984 3.47080361183081 3.47080361183081 5 0.9908590492076728 0.0 Y 0.0 N Y 3511 1692 ENSG00000131508 ENSG00000171604 + - 5 5 139008018 139063467 coding utr5p UBE2D2 CXXC5 138906016 139026884 + + 0.0 138980020 139059949 + - N - - N SA469 1 0.0802919708029197 1.0 1 0 3 N Y 0.0802919708029197 0.0 10 1.01058411951771 1.18762075359381 1.18762075359381 1.01058411951771 4 - - 0.9673284544310292 HCT116-unstranded 5.0 393762 CCGCCCCGGGGGCCGCCGCCACCCGCCTCCCACCATGGCTCTGAAGAGAATCCACAAGGAATTGAATGATCTGGCACGGGACCCTCCAGCACAGTGTTCAGCAGGTCCTGTTGGAGATGATA|AGTGAAGACATTTCCACCTGGACACCTGACCATGTGCCTGCCCTGAGCAGCGAGGCCCACCAGGCATCTCTGTTGTGGGCAGCAGGGCCAGGTCCTGGTCTGTGGACCCTCGGCAGTTGGCAGGCTCCCTCTGCAGTGGGGTCTGGGCCTCGGCCCCACCATGTCGAGCCTCGGCGGTGGCTCCCAGGATGCCGGCGGCAGTAGCAGCAGCAGCACCAATGGCAGCGGTGGCA 9 0.263130951843114 0.7225141929417901 0.556774571809435 Y Y 3.65760879692984 3.47080361183081 3.47080361183081 5 0.9918263031865908 0.0 Y 0.0 N Y 3511 1692 ENSG00000131508 ENSG00000171604 + - 5 5 139008018 139063467 coding utr5p UBE2D2 CXXC5 138906016 139026884 + + 0.0 138980020 139059949 + - N - - N SA469 1 0.21600000000000005 1.0 1 0 3 N Y 0.0679611650485437 0.21600000000000005 6 0.759782221243245 0.922065802479666 0.922065802479666 0.759782221243245 4 - - 0.983975895797635 HCT116-unstranded 5.0 392498 TTGCATTTACAACAAGAATTTATCATCCAAATATTAACAGTAATGGCAGCATTTGTCTTGATATTCTACGATCACAGTGGTCTCCAGCACTAACTATTTCAAAAGTACTCTTGTCCATCTGTTCTCTGTTGTGTGATCCCAATCCAGATGATCCTTTAGTGCCTGAGATTGCTCGGATCTACAAAACAGATAGAGAAAA|AGTGAAGACATTTCCACCTGGACACCTGACCATGTGCCTGCCCTGAGCAGCGAGGCCCACCAGGCATCTCTGTTGTGGGCAGCAGGGCCAGGTCCTGGTCTGTGGACCCTCGGCAGTTGGCAGGCTCCCTCTGCAGTGGGGTCTGGGCCTCGGCCCCACCATGTCGAGCCTCGGCGGTGGCTCCCAGGATGCCGGCGGCAGTAGCAGCAGC 31 0.911354846282509 0.778095769064303 0.616706638211334 Y Y 3.58424216889964 3.47080361183081 3.47080361183081 1 0.994987100954896 0.0 Y 0.0 N Y 3511 1692 ENSG00000131508 ENSG00000171604 + - 5 5 139008018 139063467 coding utr5p UBE2D2 CXXC5 138906016 139026884 + + 0.0 139003046 139059949 + - N - - N SA469 3 0.0845771144278607 1.13793103448276 1 2 3 Y Y 0.0 0.0845771144278607 29 1.46792875754763 1.4826818103872998 1.4826818103872998 1.46792875754763 4 - - 0.979416733799018 HCT116-unstranded 5.0 298854 GGCGACTGGGCCAGGCGCCGGGGCAGGAAGGGAGGCGGCCGCCGTGCCATTCTTAAAGGCGCCCGAGTGTAGGCGACAGGCCGCTGACGGCCGGAAGGAAAATGAGTGAGTCTTTGGTTGTTTGTGATGTTGCCGAAGATTTAGTGGAAAAGCTGAGAAAGTTTCGTTTTCGCAAAGAAACGAACAACGCTGCTATTATAA|GTATATGAGTAGACCAGTGATGAGTGGCCCAGGACTCTATGACCCTACAACCATCATGAATGCAGATATTCTAGCATATTGTCAGAAGGAAGGATGGTGCAAATTAGCTTTTTATCTTCTAGCATTTTTTTACTACCTATATGGCATGATCTATGTTTTGGTGAGCTCTTAGAACAACACACAGAAGAATTGGTCCAGTT 11 0.378544238466909 0.270626544878873 0.6137677252155129 N Y 3.41319935075004 3.47758982994594 3.41319935075004 0 0.0 0.0 Y 0.0 N Y 2075 4317 ENSG00000197045 ENSG00000100528 + - 14 14 54955914 54908149 coding coding GMFB CNIH 54941202 54893654 - - 0.0 54950389 54897122 - + N - - N SA469 1 0.0 1.0 1 0 2 N N 0.0 0.0 10 1.4753052839674698 1.18762075359381 1.4753052839674698 1.18762075359381 4 - - 0.977310941991032 HCT116-unstranded 5.0 128966 AAATGAAAAGATTGCTGTCCACTGCACAGTTCGAGGGGCCAAGGCAGAAGAAATCTTGGAGAAGGGTCTAAAGGTGCGGGAGTATGAGTTAAGAAAAAACAACTTCTCAGATACTGGAAACTTTGGTTTTGGGATCCAGGAACACATCGATCTGGGTATCAAATATGACCCAAGCATTGGTATCTACGGCCTGGACTTCTATGTG|CTATTGAAATATTTGAAGAAACTCTCCACCCTGCCTATTACAGTAGACATTCTTGCGGAGACTGGGGTTGGGAAAACAGTAAATAGCTTGCGAAAACACGAGCATGTTGGAAGCTTTGCCAGGGACCTAGTGGCCCAGTGGAAGAAGCTGGTTCCTGTGGAACGAAATGC 245 0.585969714839897 0.887368540154572 0.659606226105468 N Y 3.80041266240192 3.32320511986986 3.32320511986986 0 0.958933041301627 0.0 Y 0.994133291614518 N Y 47839 11145 ENSG00000142676 ENSG00000011007 + - 1 1 24022915 24088549 coding coding RPL11 TCEB3 24018269 24069645 + + 0.0 24021281 24075511 + - N - - N SA469 4 0.0 2.23595505617978 1 125 2 Y N 0.0 0.0 178 1.541694021746 1.26876254421202 1.541694021746 1.26876254421202 4 - - 0.9319047686773292 HCT116-unstranded CGHSA0320 5.0 2650 AGTCCTCTTCAACATCATCATCATTTTCCTCATGTTCTTCAACACCTTCGTCTTCCAGGCTGGCCTGGTCAACCTCCTATTCCATAAGTTCAAAGGGACCATCATCCTGACAGCTGTGTACTTTGCCCTCAGCATCTCCCTTCATGTCTGGGTCAT|GGTGTCCTGCTACCATATCCAACAGCTAACCTAGTACTGGATGTGGTGATGCTCCTCC 12 1.4854710187402101e-07 0.409348317471652 0.680301350585116 Y Y 3.23999710710482 3.60632674564779 3.23999710710482 0 0.0 0.0 Y 0.0046511627906977715 N Y 1590 706 ENSG00000149483 ENSG00000187049 + - 11 11 61136683 61166335 coding coding TMEM138 TMEM216 61129473 61159159 + + 0.0 61133688 61161356 + - N - - N SA469 1 0.0 1.0 1 0 4 N Y 0.0 0.0 10 1.4236695990286 1.1286085422351102 1.4236695990286 1.1286085422351102 4 - - 0.964530499546846 HCT116-unstranded 5.0 2679 AACTGCTCCAAAAGACTCCTGTCATCCAGCTTGTGCTCTTCATCATCCAGGATATTGCAGTCCTCTTCAACATCATCATCATTTTCCTCATGTTCTTCAACACCTTCGTCTTCCAGGCTGGCCTGGTCAACCTCCTATTCCATAAGTTCAAAGGGACCATCATCCTGACAGCTGTGTACTTTGCCCTCAGCATCTCCCTTCATGTCTGGGTCAT|GGTGTCCTGCTACCATATCCAACAGCTAACCTAGTACTGGATGTGGTGATGCTCCTCCTTTATCTTGGAATTGAAGTAATTCGCCTGTTTTTTGGTAAGTGTTGTCCAGAGAATATTT 13 0.8820042879612149 0.6049293159561899 0.5676363841943979 Y Y 3.23999710710482 3.60632674564779 3.23999710710482 0 0.0 0.0 Y 0.0 N Y 1590 706 ENSG00000149483 ENSG00000187049 + - 11 11 61136683 61166335 coding intron TMEM138 TMEM216 61129473 61159159 + + 0.0 61133688 61161356 + - N - 0.233143611785529 N SA469 1 0.0 1.0 1 0 4 N Y 0.0 0.0 8 1.24663296495251 0.627004745686173 1.24663296495251 0.627004745686173 4 - 9.75 0.9886048740296708 HCT116-unstranded 5.0 2503 CTTATTATTCAAGATCAAACCAGAAGATGCCATGGACTTTGGCATCTCCCTTCTCTTCTATGGCCTCTACTATGGAGTTCTGGAACGGGACTTTGCAGAAATGTGTGCAGACTACATGGCATCTACCATAGGG|AGAAGAGGACGTTGTCACAGATAAAGAGCCAGGCTCACCAGCTCCTGACGCATGCATCATGACCATGAGACACAACTGGACACCAGACCTCAGCCCTTTGTGGGTCCTGCTCCTGTGTGCCCACGTCGTCACTCTCCTGGTCAGAGCCACACCTGTCTCGCAGACCACCACAGCTGCCACTGCCTCAGTTAGAAGCACAAAGGACCCCT 9 0.600700520780136 0.547089661844363 0.649676321091758 Y Y 3.52105259334297 3.62101619003398 3.52105259334297 0 0.0 0.0 Y 0.0 N Y 698 1092 ENSG00000137522 ENSG00000137496 + - 11 11 71708643 71716761 coding utr5p RNF121 IL18BP 71639747 71709587 + + 0.0 71701763 71710973 + - N - - N SA469 1 0.0187793427230047 1.0 1 0 1 N Y 0.0 0.0187793427230047 7 0.9146892760598292 1.56382360100551 1.56382360100551 0.9146892760598292 4 - - 0.975406898036784 HCT116-unstranded 5.0 381916 CAGCCAGCCCTGTCCCTGCCTAGCCTTTAGCCCTGTCCCCACTCACGTGGCTTCTCAGCGGGCTGCATGGAATGTCTGGTAGCTCACCACACTTCTGGCTTCCATTTGTCTTCACTCAACGTCAGGGTGGGGGAGTGGTGCTGGCCAATCACAGGAGAGAGC|CTCCCGCGGCCGCCCCTTCCCTGGGCCGGGTCATGCGCTGCCCCAAGTGCCTTCTCTGCCTGTCAGCACTGCTCACACTCCTGGGCCTCAAAGTGTACATCGAGTGGACATCCGAGTCCCGGCTCAGCAAGGCCTACCCCAGCCCTCGGGGCACCCCGCCAAGCCCCACGCCAGCCAACCCTGAGCCCACCCTACCTGCCAACCTCTCCACCCGCCT 7 0.641787250743677 0.964804336829072 0.441456343480264 Y Y 3.22423474015539 2.94384160132655 2.94384160132655 0 0.0 0.0 Y 0.0 N N 5604 381 ENSG00000105341 ENSG00000177191 + - 19 19 41946622 41934635 utr3p intron ATP5SL B3GNT8 41937223 41931265 - - 0.0 41937997 41932715 - + N - - N SA469 1 0.0 1.0 1 0 1 N Y 0.0 0.0 5 1.15811464791446 1.20975033285332 1.20975033285332 1.15811464791446 4 - - 0.94294260832391 HCT116-unstranded 5.0 381788 GACTGGGCTGAGGGCCTGAAGTCAGGGCCGGAGGAGCAGCCTCGGGACACAGCCAGCCCTGTCCCTGCCTAGCCTTTAGCCCTGTCCCCACTCACGTGGCTTCTCAGCGGGCTGCATGGAATGTCTGGTAGCTCACCACACTTCTGGCTTCCATTTGTCTTCACTCAACGTCAGGGTGGGGGAGTGGTGCTGGCCAATCACAGGAGAGAGC|CTGTTCCCACAGGCTCCATTATTCAAACTTTGGGGGAGGAAATCAGGGCTGGACAGATCATCAACTGCTGCTGCTGACAGACTGTGTTCCTGCCATGATGGGGACAGGCCTGCCCCAAACCAGGGTGGAGTGAAGGGGTCAGCCCAGGCTTAGTGGGAGCCCCTTAGTCTTACCCCATGTCTTGGGAGGTC 27 0.88721641547427 0.861177871290575 0.184124550932823 Y Y 3.22423474015539 3.44086924197409 3.22423474015539 0 0.0 0.0 Y 0.0 N N 5604 381 ENSG00000105341 ENSG00000177191 + - 19 19 41946622 41934635 utr3p utr5p ATP5SL B3GNT8 41937223 41931265 - - 0.0 41937997 41934624 - + N - 31.6763285024155 N SA469 1 0.0 1.0 1 0 1 N Y 0.0 0.0 18 1.45317570470795 1.38678696692942 1.45317570470795 1.38678696692942 4 - 0 0.9619814841880728 HCT116-unstranded 5.0 102653 GAAACATGGCACAAACCAGACTTGGGAACATTAGAAAATGTACATGGTTTAGATCCAAACACATGGAAAACTGTTGAAATTGTCCATATAGATATTGCAGATAGAAGTCAAGTTGAACCAGCAGACTACAAAGCTGATGAAGACCCAGCATTATTCCAGTCAGTCAAGACCAAGAGAGGCCCTTTGGGACCCAACTGGA|AGCCCACGACCTCCCTGCAAACAAGGCCTCAGCATCCCAGCCTGGCAGCCACTTGCAGTGCCTGTCTGTCCACTGCACAGACGACGTGGGTGACGCCAAGGCTCGAGCCTCCGTGCCCACCTGGCGGTCCCTGCATTCTGACATCTCCAACAGATTTGGGACATTCGTGGCTGCCCTAACTTGAATGACAAGAAAGA 6 0.26867783582972105 0.797941967195512 0.253795900233478 Y Y 3.30128837699106 3.22064101730576 3.22064101730576 1 0.0 0.0 Y 0.0 N Y 1103 5742 ENSG00000180957 ENSG00000169184 + - 22 22 28316122 28197486 coding intron PITPNB MN1 28202413 28144265 - - 0.0 28269726 28147084 - + N - 1.47692674844306 N SA469 1 0.0 1.0 1 0 3 N Y 0.0 0.0 6 1.12123201581527 1.08434938371609 1.12123201581527 1.08434938371609 4 - 47 0.96584644663295 HCT116-unstranded 5.0 102652 CGGGAAGATGGTGCTGATCAAGGAATTCCGTGTGGTTTTGCCATGTTCTGTTCAGGAGTATCAGGTTGGGCAGCTTTACTCTGTTGCAGAAGCTAGTAAGAATGAGACTGGTGGTGGAGAAGGAATTGAAGTCTTAAAGAATGAACCTTATGAGAAGGATGGAGAAAAGGGACAGTATACGCACAAAATTTATCACCTAAAG|AGCCCACGACCTCCCTGCAAACAAGGCCTCAGCATCCCAGCCTGGCAGCCACTTGCAGTGCCTGTCTGTCCACTGCACAGACGACGTGGGTGACGCCAAGGCTCGAGCCTCCGTGCCCACCTGGCGGTCCCTGCATTCTGACATCTCCAACAGATTTGGGACATTCGTGGCTGCCCTAACTTGAATGACAAGAAAGATCCCCTCC 25 0.7284020883399179 0.78882454620363 0.191213979680448 Y Y 3.31638839653118 3.22064101730576 3.22064101730576 0 0.0 0.0073893418753638905 Y 0.0073893418753638905 N Y 1103 5742 ENSG00000180957 ENSG00000169184 + - 22 22 28316122 28197486 coding intron PITPNB MN1 28202413 28144265 - - 0.0 28306952 28147084 - + N - 1.47692674844306 N SA469 1 0.0344827586206897 1.0 1 0 3 N Y 0.0 0.0344827586206897 19 1.4236695990286 1.49743486322698 1.49743486322698 1.4236695990286 4 - 14.8421052631579 0.9749198434468608 HCT116-unstranded 5.0 102758 AGGGCAGCCACGAATGTCCCAAATCTGTTGGAGATGTCAGAATGCAGGGACCGCCAGGTGGGCACGGAGGCTCGAGCCTTGGCGTCACCCACGTCGTCTGTGCAGTGGACAGACAGGCACTGCAAGTGGCTGCCAGGCTGGGATGCTGAGGCCTTGTTTGCAGGGAGGTCGTGGG|CGGGACCACAGAAGCTCAAGCCCTTCTTGCAGGCAGTGTTCCTAGAAGGACTGGAGGGGAAGCTACTTCTCCGGACACCTGGGGTCAGCAGAACAGGCCTCTCCAGTGGGCCAGTGGTGGAAAGGTCAAGGATTTGGGCATTACAGATTCAGAT 10 0.7202704094063459 0.932340719629438 0.209856857711678 Y Y 3.2038455805864303 3.5597647729410897 3.2038455805864303 0 0.0 0.0 Y 0.0 N N 5742 1103 ENSG00000169184 ENSG00000180957 - + 22 22 28197486 28316122 coding downstream MN1 PITPNB 28144265 28202413 - - 0.0 28147084 28202379 + - N - - N SA469 1 0.238461538461538 1.0 1 0 1 N Y 0.0 0.238461538461538 5 1.18762075359381 0.9589484345788531 1.18762075359381 0.9589484345788531 4 - - 0.918457550333879 HCT116-unstranded 5.0 102738 GGCTGGGAACCCCGAGAAGACACGCACGAAGAGGGCGCACCCGCCGGGCCGCACACCTTGCCCTGGGCCACCCGGTCCAAGACCCAGACCCTCTGCGGGTGCGAAGTTGGCCTCCTTAAGAGATCAATTAAACTGAAGAGGCCGAGGAATGGAATTGGGCTGTGATA|CGGGACCACAGAAGCTCAAGCCCTTCTTGCAGGCAGTGTTCCTAGAAGGACTGGAGGGGAAGCTACTTCTCCGGACACCTGGGGTCAGCAGAACAGGCCTCTCCAGTGGGCCAGTGGTGGAAAGGTCAAGGATTTGGGC 4 0.616127920677563 0.700090632991759 0.299465827417895 Y Y 3.45976132345673 3.5597647729410897 3.45976132345673 0 0.0 0.0 Y 0.0 N N 5742 1103 ENSG00000169184 ENSG00000180957 - + 22 22 28197486 28316122 upstream downstream MN1 PITPNB 28144265 28202413 - - 0.0 28198656 28202379 + - N - - N SA469 1 0.029126213592233 1.0 1 0 2 N Y 0.0 0.029126213592233 7 1.1064789629756 0.759782221243245 1.1064789629756 0.759782221243245 4 - - 0.98302006989734 HCT116-unstranded 5.0 393935 GAATGGAAGGTTGTAAACCCATATTATTTGCGTGTACGAAGGAAGAATCCTGTGACAAGCACTTACTCCAAAATGAGTCTACAGTTATACCAAGTGGATAGTAGAACTTATCTACTGGATTTCCGTAGTATTGATGA|ATGGCTTCCTTTGGGTGGAAGAGGAAAATTGGTGAGAAGGTCTCAAAGGTCACTTCCCAGCAGTTTGAAGCTGAAGCTGCTGATGAGAAGGATGTAGTTGACAACGATGAAGGGAACTGGCTTCATGCCATTAAACGTAGGAAAGAAATTCTTCTTGAAGGCTGTGCTGAG 7 0.873192441025105 0.9849141700743628 0.264586770653917 Y Y 3.53721618787652 3.19975734419684 3.19975734419684 0 0.9927243521602528 0.0 Y 0.0 N Y 908 308 ENSG00000132356 ENSG00000113638 + - 5 5 40798476 40756077 coding coding PRKAA1 TTC33 40759481 40714577 - - 0.0 40764616 40747121 - + N - 1.88956381468577 N SA469 1 0.0 1.0 1 0 2 N Y 0.0 0.0 7 0.863053591120968 1.1064789629756 1.1064789629756 0.863053591120968 4 - 2.71428571428571 0.985510803845345 HCT116-unstranded 5.0 393936 CCCCATCCTGAAAGAGTACCATTCTTGGTTGCTGAAACACCAAGGGCACGCCATACCCTTGATGAATTAAATCCACAGAAATCCAAACACCAAGGTGTAAGGAAAGCAAAATGGCATTTAGGAATTAGAAGTCAAAGTCGACCAAATGATATTATGGCAGAAGTATGTAGAGCAATCAAACAATTGGATTATGAATGGAAG|AATGGCTTCCTTTGGGTGGAAGAGGAAAATTGGTGAGAAGGTCTCAAAGGTCACTTCCCAGCAGTTTGAAGCTGAAGCTGCTGATGAGAAGGATGTAGTTGACAACGATGAAGGGAACTGGCTTCATGCCATTAAACGTAGGAAAGAAATTCTTCTT 3 0.977497281696057 0.547474428639274 0.104430568508398 Y Y 3.44143830342756 3.20720590972129 3.20720590972129 0 0.9936483153842058 0.0 Y 0.0 N Y 908 308 ENSG00000132356 ENSG00000113638 + - 5 5 40798476 40756077 coding utr5p PRKAA1 TTC33 40759481 40714577 - - 0.0 40764854 40747121 - + N - 1.88651035282507 N SA469 1 0.0 1.0 1 0 2 N Y 0.0 0.0 6 1.32777475557072 1.04009022519706 1.32777475557072 1.04009022519706 4 - 3.16666666666667 0.965988699394072 HCT116-unstranded 5.0 273692 GTTTTGGTGGATTCAGAAGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAAGATGCTGCAGTAGGGGAACAGGAGGGAGCACGTGAGAGAGAGGAGTTGCCAAAAGAAATACCTAAGCAGGACCACATTCACAGAGTGACCGCCTTGGTGAATGGGAACATAGAACAGATGGGAAATGGATTCCAGGATCTTCAAGA|GGAACCGCTGCTGCTGGCCGAACTCAAGCCCGGGCGCCCCCACCAGTTTGATTGGAAGTCCAGCTGTGAAACCTGGAGCGTCGCCTTCTCCCCAGATGGCTCCTGGTTTGCTTGGTCTCAAGG 15 1.0 0.6719098714834221 0.982927004011746 Y Y 3.38912318237562 3.1986844216336 3.1986844216336 0 0.0 0.0 Y 0.0 N Y 1500 5164 ENSG00000176834 ENSG00000176871 + - 12 12 118573831 118500235 coding coding VSIG10 WSB2 118501398 118470712 - - 0.0 118506182 118490283 - + N - 14.5183290410536 N SA469 1 0.247058823529412 1.0 1 0 1 Y Y 0.247058823529412 0.0 6 0.627004745686173 0.796664853342432 0.796664853342432 0.627004745686173 4 - 23.6666666666667 0.9501660098322192 HCT116-unstranded 5.0 58401 ATCATGCTAGACGAAAACCTCAAGCCCTGGGTCCTGGAAGTCAACATTTCCCCAAGCCTCCACTCCAGCTCTCCACTGGATATCAGCATCAAAGGCCAGATGATTCGTGACCTTCTGAATCTGGCAGGTTTTGTCCTGCCCAATGCAGAGGATATCATTTCCAGCCCCAGCAGCTGCAGCAGCTCCACCACCAG|GTGCTTTACAAGGCCAAGTACGGTCCAATGTGGATGTCCTACTTAGGGCCTCAGATGCACGTGAACCTGGCCAGTGCCCCGCTCTTGGAGCAAGTGATGCGGCAAGAGGGCAAGTACCCAGTACGGAACGACATGGAGCTATGGAAGGAGCACCGGGACCAGCACGACCT 11 1.0 0.8651537992700692 0.533451540820363 Y Y 2.8652908864045696 3.80041266240192 2.8652908864045696 0 0.0 0.0 Y 0.0 N Y 1942 244 ENSG00000135912 ENSG00000135929 + - 2 2 219620139 219680016 coding coding TTLL4 CYP27A1 219575568 219646472 + + 0.0 219614869 219674300 + - N - 0.537639476129095 N SA469 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 19 1.2835155970516998 1.27613907063186 1.2835155970516998 1.27613907063186 4 - 0 0.980101382391286 HCT116-unstranded 5.0 55816 GTGAACGGCCCATAGGTCAGGTCGTGCTGGTCCCGGTGCTCCTTCCATAGCTCCATGTCGTTCCGTACTGGGTACTTGCCCTCTTGCCGCATCACTTGCTCCAAGAGCGGGGCACTGGCCAGGTTCACGTGCATCTGAGGCCCTAAGTAGGACATCCACATTGGACCGTACTTGGCCTTGTAAAGC|ACCTGATCAGGAATTTTCTGGGTCAGATAATAGGCTTTCTTCATCTTCTGTGCAGTGACATGCTCTGGAGCCATTCGACATTTGTCCCCAGGGGAGGTGGGCAGGCTACGGCAGAGGCCAGAAAGAAAGCAAAGGGC 6 0.7209625826299441 0.8421678470878979 0.108446182086591 Y Y 3.83489927696465 3.57063922744582 3.57063922744582 0 0.0 0.0 Y 0.0321933855997115 N Y 244 1942 ENSG00000135929 ENSG00000135912 - + 2 2 219680016 219620139 coding intron CYP27A1 TTLL4 219646472 219575568 + + 0.0 219674300 219616529 - + N - 2.61054865960992 N SA469 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 9 1.36465738766991 0.700770009884546 1.36465738766991 0.700770009884546 4 - 2.66666666666667 0.9820607096257572 HCT116-unstranded 5.0 381520 CTGAGGCACTCATCATGCAGGCCCGATCTGCCCACCGTGACTGTGAGGACGTGGCCAAGGCCGCCCTGCGGGACCTGGGTTGTCATGTCGAGCTCCGAGAGCTGTGGACAGGCCAGAGGGGCAACCTGGCGCCATGACCCCAGGCCCAGTCTGGGCCGTGACTCTGG|GACCGAGTCTCCTGCCATTCCGAGCAGGCCTGGTATGGGTAATGGTGTGAAGGAAGGCCCGGTGCGATTGCATGAGGATGCTGAGGCTGTCCTGTCCTCGTCCGTCTCATCAAAGCGTGACCACAGGCAAGTGCTCAGCTCCC 9 0.925231608348154 0.699512848729448 0.186809380452687 Y Y 3.41423242051993 3.72298830320566 3.41423242051993 0 0.0 0.0 Y 0.0 N Y 3907 438 ENSG00000105676 ENSG00000181035 + - 19 19 19170563 19223704 utr3p utr5p ARMC6 SLC25A42 19144384 19174803 + + 0.0 19168467 19206900 + - N - - N SA469 1 0.0 1.0 1 0 2 N Y 0.0 0.0 14 0.944195381739178 1.05484327803674 1.05484327803674 0.944195381739178 4 - - 0.988501375134682 HCT116-unstranded 5.0 76518 GGAGGGGAGTAGGAGTGTTCCTCACTCCCACCTAGGAGGAAGGCATCTCCGATTCCATTCCATTGATGCTGAGTGCCGGAGATAAATACATTTACTTGTCTTTGGGGGAGTCCCCGAGCTCCTTTCTCAGCTGCTGCAGGTCCCACAGCCTCATCTTGAGTCTGGCCTGCTCCTCCTGAAGGGCGTGGAGGGC|CTCTCTTCAAACTTGACCTTGGCCTCCCGTCGGGCCTTGCGTTTAAGAGCAGGATCTCTGAAGACATCCTTATTGACGACAGTTTTGTCCAAGGGGATATCCACAGAGTACCTGGGGACAAAGGTGGAGAG 284 1.0 0.979094500273394 0.5524731706676271 Y Y 3.28655907981151 3.2693225627147204 3.2693225627147204 0 0.0 0.0 Y 0.0 N Y 1735 28553 ENSG00000068079 ENSG00000131469 - + 17 17 41166473 41154976 coding coding IFI35 RPL27 41158742 41150290 + + 0.0 41164196 41154800 - + N - 0.638183957600602 N SA469 3 0.0 1.38095238095238 1 6 1 N Y 0.0 0.0 21 1.44579917828812 0.870430117540805 1.44579917828812 0.870430117540805 4 - 252.666666666667 0.925313101022634 HCT116-unstranded 5.0 392722 TGCTGTGTGGAAACTCAACTCTCTGGAACTTCTTCCTTCCTCCTGCCTCTGCACAAATGTGACGGCAGCAGCTGAAGCCAACATCTTGCGACCATGAGAGAAAAACCTGGAGAACGGACGAGTCCTCAACCCTGACTTCAGACCAACCTACACCCACCTCTGGACGTGGGGCTAA|TAGAGACGTCATCTAAGAGGAGCTTGCAAGTCCAGAGGGCTTCCTGAAGGAAGTGAGCTGAGAATAATATGAAATTAACCAGACCAAGGGCCATTCCAGGAAGAGAGAATGGTACGTGAAACTGCC 7 0.735294752500978 0.618506047964259 0.3995983639557821 Y Y 3.53039946453785 3.61464054707277 3.53039946453785 0 0.0 0.0033112582781456 Y 0.0428623988226636 N N 448 7278 ENSG00000113761 ENSG00000160867 + - 5 5 176508190 176525145 utr3p upstream ZNF346 FGFR4 176449697 176513887 + + 0.0 176506605 176513157 + - N - - N SA469 1 1.0 1.0 1 0 1 N Y 0.0625 1.0 8 1.06221980445658 0.8187944326019441 1.06221980445658 0.8187944326019441 4 - - 0.977525823730416 HCT116-unstranded 5.0 299002 CCAAACCTGAGCTCTTCGCTTATCCCCTGGATTGGTCTATTGTGGATTCTATACTGATGGAACGTCGAATTAGACCATGGATTAATAAGAAAATCATAGAATATATAGGTGAAGAAGAAGCTACATTAGTTGATTTTGTTTGTTCTAAGGTTATGGCTCATAGTTCACCCCAGAGCATTTTAGATGATGTTGCCATGAA|TGACAATAGAGAACGGCAGGAGCACAACGACAGACGGAGCCTTGGCCACCCTGAGCCATTATCTAATGGACGACCCCAGGGTAACTCCCGGCAGGTGGTGGAGCAAGATGAGGAAGAAGATGAGGAGCTGACATTGAAATATGGCGCCAAGCATGTGATCATGCTCTTTGTCCCTGTGACTCTCTGCATG 52 0.6824421088719991 0.784330016711684 0.815524743156204 Y Y 3.41526549028982 3.20078106639692 3.20078106639692 1 0.0 0.0 Y 0.0 N Y 11298 4711 ENSG00000119707 ENSG00000080815 + - 14 14 73588122 73690399 intron coding RBM25 PSEN1 73525144 73603126 + + 0.0 73581041 73637505 + - N - - N SA469 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 31 1.4826818103872998 1.43104612544844 1.4826818103872998 1.43104612544844 4 - - 0.979131352143884 HCT116-unstranded 5.0 299097 CCTGAGCTCTTCGCTTATCCCCTGGATTGGTCTATTGTGGATTCTATACTGATGGAACGTCGAATTAGACCATGGATTAATAAGAAAATCATAGAATATATAGGTGAAGAAGAAGCTACATTAGTTGATTTTGTTTGTTCTAAGGTTATGGCTCATAGTTCACCCCAGAGCATTTTAGATGATGTTGCCATG|ACCTAATCTGGGAGCCTGCAAGTGACAACAGCCTTTGCGGTCCTTAGACAGCTTGGCCTGGAGGAGAACACATGAAAGAAAGAACCTCAAGAGGCTTTGTTTTCTGTGAAACAGTATTTCTATACAGTTGCTCCAATGACAGAGTTACCTGCACCGTTGTCCTACTTCCAGAATGCACAGATGTCTGAGGACAACCACCTGA 52 1.0 0.803961031416472 0.584350332709473 Y Y 3.35463656781289 3.6868062714637406 3.35463656781289 0 0.0 0.0 Y 0.0 N Y 11298 4711 ENSG00000119707 ENSG00000080815 + - 14 14 73588122 73690399 coding utr5p RBM25 PSEN1 73525144 73603126 + + 0.0 73581041 73614503 + - N - - N SA469 1 0.0146341463414634 1.0 1 0 2 Y Y 0.0 0.0146341463414634 43 1.43104612544844 1.5121879160666498 1.5121879160666498 1.43104612544844 4 - - 0.98975341396599 HCT116-unstranded 5.0 274770 CTTATTCATTGCGTCCACTGCTCTTCTGACAGCATCATTTACAGGTTCACACTGTTCCACCTGAGTCTTCATATTATGCTCAAAATATGGACCTATCAGAAAATAGTTCTCTCCCCATTCATCTGCTGTTGTTTTGGCCTTTGTCTGAATCACAGTATAGATGCCTCCAA|CTTAGCCTGAAATATAAGTTGATGTTTTTTCTCCAAGTTGTTGTCATCCGTTGACTTTGCTTGTGTTATGTTTTCAGGTAAGAAGTTCTCTTTTTCAGTGGTTAAATTGAACCAATCCTTTCTTTAATGGCTCTAGATATGG 6 0.8666509895887929 0.8644783536489821 0.0377878507270979 Y Y 3.69937614314766 3.39065076568547 3.39065076568547 0 0.0 0.0172343967961121 Y 0.0172343967961121 N N 316 81209 ENSG00000111713 ENSG00000111716 - + 12 12 21757781 21910791 coding downstream GYS2 LDHB 21689123 21788276 - - 0.0 21733457 21783595 + - N - - N SA469 1 0.0 1.0 1 0 1 N Y 0.0 0.0 10 1.20975033285332 0.863053591120968 1.20975033285332 0.863053591120968 4 - - 0.9803569176382768 HCT116-unstranded 5.0 359232 ATGTCCCTTATGGCTATTTGCCGCCCTCTGCCAGTCACTTTCCACCGAGCCTTTGACATGGTTCATGATCCAATGGCAGCTCTGGAGACCCTCTTAACCTTGGGATTTGAACGCGTGTTGACCAGTGGATGTGACAGTTCAGCATTAGAAGGGCTACCCCTAATAAAGCGACTCATTGAGCAG|AAATCACTCTTCTTCCATGTAGCCCATGTGCTTTAGGGAAGGCTGACCTTACCACAGCTTCAGGATGGGCCTGATTAATCCAAGAGTAACCTCATCCTTGTAAGGAATTGATTCAGGAATTTACACCACTGAGATACCAGGAGAAGTTTGCTGGTGGATTCTACTTCTGGGAGACCTACTGAAAATG 23 0.8801204785138591 0.878801509700346 0.30579941038751 Y Y 3.56129235625094 3.53768019619294 3.53768019619294 4 0.0 0.0 Y 0.00269541778975724 N N 795 2002 ENSG00000119929 ENSG00000023839 + - 10 10 101515891 101611949 coding upstream CUTC ABCC2 101462315 101542489 + + 0.0 101507147 101529388 + - N - - N SA469 1 1.0 1.0 1 0 2 N Y 0.0 1.0 18 1.31302170273104 1.2835155970516998 1.31302170273104 1.2835155970516998 4 - - 0.985698814316396 HCT116-unstranded 5.0 359233 GCCTTTGACATGGTTCATGATCCAATGGCAGCTCTGGAGACCCTCTTAACCTTGGGATTTGAACGCGTGTTGACCAGTGGATGTGACAGTTCAGCATTAGAAGGGCTACCCCTAATAAAGCGACTCATTGAG|CAGAATTCCTCATTCCTGGACAGTCCGGAGGCAGACCTGCCACTTTGTTTTGAGCAAACTGTTCTGGTGTGGATTCCCTTGGGCTACCTATGGCTCCTGGCCCCCTGGCAGCTTCTCCACGTGTATAAATCCAGGACCAAGAGATCCTCTACCACCAAACTCTAT 8 0.28128004341195395 0.44105600448108895 0.595327660436729 Y Y 3.56129235625094 3.75951055208464 3.56129235625094 0 0.0 0.0 Y 0.0 N Y 795 2002 ENSG00000119929 ENSG00000023839 + - 10 10 101515891 101611949 coding intron CUTC ABCC2 101462315 101542489 + + 0.0 101507147 101544365 + - N - 0.244065850449084 N SA469 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 12 1.18762075359381 1.23187991211283 1.23187991211283 1.18762075359381 4 - 2.83333333333333 0.981476504771665 HCT116-unstranded 5.0 329603 CGCGTCCCACCTCCGCGGCCCTGGGCGCCGTGGTGTCGACGGGCCCCGAGCCTATGACGGGCCAGGGCCAGTCGGCGTCCGGGTCGTCGGCGTGGAGCACGGTATTCCGCCACGTCCGGTATGAGAACCTGATAGCGGGCGTGAGCGGCGGCGTCTTATCCAACCTTGCGCTGCATCCGCTCGACCTCGTGAAGATCCGCTTCGCCG|GATCTTCTAAGGGTGTGAGGATACAGGCGTCAAAGACCCCGTGCTGAGACAGCTCCATAACAACATGCAGATATTTGGCAATGAGGGTTCAGAAGAGGACTTGCTGTGGAGAAGAGAGAAAAGAGATGGGAAGACTCTGTGAATGAATAGAGAACACTCTGCAAGCATCCCAGTTCCTTTGGTTGCCCTGCAGTCTGCAGGT 44 1.0 0.97420053611555 0.403592822877551 N Y 3.45140766923839 3.6925594198089904 3.45140766923839 0 0.995061579328665 0.0 Y 0.985184737985994 N Y 546 349 ENSG00000164933 ENSG00000247081 + - 8 8 104427417 104311000 coding intron SLC25A32 RP11-318M2.2 104410863 104169218 - - 0.0 104427012 104258912 - + N - - N SA469 1 0.0 1.0 1 0 2 N N 0.0 0.0 35 1.58595318026503 1.46055223112779 1.58595318026503 1.46055223112779 4 - - 0.98975341396599 HCT116-unstranded 5.0 329156 GAGCCTATGACGGGCCAGGGCCAGTCGGCGTCCGGGTCGTCGGCGTGGAGCACGGTATTCCGCCACGTCCGGTATGAGAACCTGATAGCGGGCGTGAGCGGCGGCGTCTTATCCAACCTTGCGCTGCATCCGCTCGACCTCGTGAAGATCCGCTTCGCCG|GCTGTCTCTACCAGGCCAGAATTTGGGGCAGGCAAGATTTTCAGCATCCCTAAAATCACACTAAGAAGATAAACATGGAAACAGCTTGGAGCTGCCCTACCCATAGTGAGGTGGTACTGACTGGAAGACAGCTTAAACGATTTGGAGAAAA 10 0.616127920677563 0.835594046458708 0.252798868914574 N Y 3.45140766923839 3.57742544556096 3.45140766923839 0 0.986797418916624 0.0 Y 0.00320512820512819 N Y 546 349 ENSG00000164933 ENSG00000247081 + - 8 8 104427417 104311000 coding intron SLC25A32 RP11-318M2.2 104410863 104169218 - - 0.0 104427012 104279748 - + N - - N SA469 1 0.0 1.0 1 0 2 N N 0.0 0.0 7 1.13598506865495 0.9589484345788531 1.13598506865495 0.9589484345788531 4 - - 0.98269079913356 HCT116-unstranded 5.0 131457 GGCGCCGCCATCTTGGGGCTGCTGGGACTCGCGTCGGTTGGCGACTCCCGGACGTAGGTAGTTTGTTGGGCCGGGTTCTGAGGCCTTGCTTCTCTTTACTTTTCCACTCTAGGCCACGATGCCGCAGTACCAGACCTGGGAGGAGTTCAGCCGCGCTGCCGAGAAGCTTTACCTCGCTGACCCTATGAAGG|AGCCATGTGGCTAGAAATCCTCCTCACTTCAGTGCTGGGCTTTGCCATCTACTGGTTCATCTCCCGGGACAAAGAGGAAACTTTGCCACTTGAAGATGGGTGGTGGGGGCCAGGCACGAGGTCCGCAGCCAGGGAGGACGACAGCATCCGCCCTTTCAAGGTGGAAACGTCAGATGAGGA 55 1.0 0.7076665312477021 0.43633920496893897 N Y 3.48912663185998 3.5816815158199 3.48912663185998 2 0.994459378733572 0.0 Y 0.49026284348865 N Y 11340 5439 ENSG00000143742 ENSG00000143819 + - 1 1 225978168 226033260 intron utr5p SRP9 EPHX1 225965531 225997794 + + 0.0 225965714 226016426 + - N 0.645460993706996 0.0961911630113943 N SA469 2 0.0 1.90566037735849 1 48 2 N N 0.0 0.0 53 1.38678696692942 1.37203391408974 1.38678696692942 1.37203391408974 4 32.2641509433962 7.88679245283019 0.933762604185475 HCT116-unstranded CGHSA0324 5.0 326365 CCGGAGCTTTCTTTGGGTCTGGGGGGCCAGGGTCTTTCCCTGCAGCCAGGGGTCTTTCACCTGTGGGACCTTTAGGTGCCTTGTCTGTTGATGGGTTCTGAATTCCCAGCTCAACTGCTCCATTTTCTGTCGCCATGAGGTAGGGAGGCGTGTGCTGCTGCTTGTCTAACTCAAGTCTTTCTAGC|AGTTCTCTCCGTAGCCTGGCCAGCTCCTCTTTTTTCTGCTCTTCCTCCTGTAGTCTGGCCTCCTCCAACTGCTGGGCTTTCTGGGCTTCTACCTCAGCCATTCTCTTCTCCAGCTCCTGCCGCTCTTTGGCTCTCTTCTCAGTAGCCAGCT 19 0.8480818536179221 0.911695708859512 0.544210734733904 N Y 3.3646059336237206 3.1614158869593 3.1614158869593 0 0.0 0.0 Y 0.0 N Y 1168 16726 ENSG00000101306 ENSG00000088325 - + 20 20 30422492 30389608 utr5p coding MYLK2 TPX2 30407111 30327074 + + 0.0 30407336 30386355 - + N - 1.31140552037874 N SA469 1 0.0 1.0 1 0 2 N N 0.0 0.0 16 1.37203391408974 1.15811464791446 1.37203391408974 1.15811464791446 4 - 65.875 0.9855187992232192 HCT116-unstranded 5.0 254510 AGCAGTACAGCTTCCTCGAGAGGGACAAGAAGACCAAGGTCTGACTAAGGATTTCAGCAATAGTCCTTTGCATCGCTTTAAAAAGCCGGGCTCTAAAAACTTCCAGAATATCTTTCCACCATCAGCCACTCTGCATCTTTCCAACATTCC|GTTTAGACGTCTGTGCCACTTGCCATGAACATGCCACATGCCAGCAAAGAGAAGGGAAGAAGATCTGTATTTGCAACTATGGATTTGTAGGGAACGGGAGGACTCAGTGTGTTGATAAAAATGAGTGCCAGTTTGGAGCCACTCTTGTCTGTGGGAACCACACATCTTGCCACAACACCCCCGGGGGCTTCTATTGCATTTGC 15 0.660049401696098 0.449041536827931 0.571236817383337 Y Y 3.0867335950812698 3.60785432895764 3.0867335950812698 1 0.0 0.0 Y 0.00282485875706229 N Y 3970 674 ENSG00000119314 ENSG00000106868 + - 9 9 115095947 114937688 coding coding PTBP3 SUSD1 114980715 114803065 - - 0.0 114989691 114919893 - + N - - N SA469 1 0.00490196078431373 1.0 1 0 1 Y Y 0.0 0.00490196078431373 9 1.05484327803674 1.3794104405095802 1.3794104405095802 1.05484327803674 4 - - 0.936029191979424 HCT116-unstranded 5.0 225737 CAGAGACTGGCAGGCCTCGGCCTAAAGGTCTGGAGGGTGAGCGACCTGCGAGACTCACAAGAGGGGAAGCTGACAGAGATACCTACAGACGGAGTGCTGTGCCAC|GTGCTACTCGTGAGCAGTAGTCGCCATCCAGACAGATGGATTGTCCCTGGAGGAGGCATGGAGCCCGAGGAGGAGCCAAGTGTGGCAGCAGTTCGTGAAGTCTGTGAGGAGGTATGCATGGAGAAGAGAGGGCACAGCTGTGCCTCGTCATCATGAACCTGTCCTATCTGTGTAGTTCTTTAATATGTCAGCACTCACTGAATAAATATACAGTCACAGAAAAAGGGC 27 0.485730761405468 0.932666219347762 0.691082970288032 Y Y 3.5676145660496603 3.6988816296077 3.5676145660496603 0 0.990504704875962 0.0 Y 0.0 N Y 48549 2346 ENSG00000124614 ENSG00000112664 + - 6 6 34393902 34360451 coding coding RPS10 NUDT3 34385231 34255997 - - 0.0 34389507 34309749 - + N - 3.37707266279565 N SA469 17 0.0 7.5 4 30 4 N Y 0.0 0.0 30 1.24663296495251 1.19499728001365 1.24663296495251 1.19499728001365 4 - 7.63333333333333 0.9319047686773292 HCT116-unstranded CGHSA0652 5.0 335537 CCAAGAGGTGGTGGCAGGGGAGGCCGAGGAGGAGGAAGAGGAGGAGGTGGCAGAGGTGGTGGCAGAGGCGGTGGTTTTAGAGGTGGAAGAGGAGGTGGAGGTGGGGGCTTCAGAGGAGGAAGAGGTGGTGGTTTCAGAGGGAGA|AGAATGACCACCAACACTTACATCGGCTTGATTCTGGGAGCCTGGATCAATGGCCTGTTTTGGGCTTTGATGCCTATCATAGGGTGGGCTAGTTATGCCCCAGATCCTACTGGTGCTACGTGTACCATAAACTGGAGG 5 0.119059020672615 0.7376227786037909 0.465654011987541 Y Y 2.9286313709761806 3.69784855983781 2.9286313709761806 7 0.0 0.0 Y 0.0 N Y 1387 111 ENSG00000109534 ENSG00000180245 + - 4 4 110745893 110765760 coding coding GAR1 RRH 110736666 110749150 + + 0.0 110745189 110757163 + - N - 1.29322559103388 N SA469 1 0.46031746031746 1.0 1 0 2 Y Y 0.46031746031746 0.0 8 0.929442328899504 0.9810780138383648 0.9810780138383648 0.929442328899504 4 - 5.125 0.931478701406698 HCT116-unstranded 5.0 317382 AGGAGGTGGAGGAGAAGAAGCGGGAGCAGGAACTCAAAGCAGCCGCTGATGGCGTACTATCTGAAGTGAGGAAAAAACAAGCAGATACCAAAAGAATGGTGGACATTCTACGGGCTTTGGAGAAATTGAGGAAACTGAGGAAAGAGGCTGCAGCGAGGAAA|GCTGTTTGGGGCTCAGCTAAGTGACCACACAGGAGAGCAGTGAGGCCATTTGAGGCCTGAGCCTGGTCCTCAGGACTCGACTCTCTCTCCCTGCCATCAAGCAGCCTGCCCCAGCCCTGCCAGCCATCTCCACACTCCTGACAGAATGAATGCCC 4 1.0 0.7874378373002591 0.299465827417895 Y Y 3.0248596833724304 3.45297510534159 3.0248596833724304 1 0.0 0.00315457413249232 Y 0.00315457413249232 N Y 735 87 ENSG00000090470 ENSG00000246922 + - 15 15 65426174 65407535 coding utr5p PDCD7 UBAP1L 65409717 65385338 - - 0.0 65421370 65398697 - + N - - N SA469 1 0.0 1.0 1 0 1 N Y 0.0 0.0 8 1.13598506865495 1.20237380643348 1.20237380643348 1.13598506865495 4 - - 0.96217891629414 HCT116-unstranded 5.0 211404 GGCCCGCAGGACCCCCGCGGGAGCCGGTCAGGCGGCGGCGGCGGCTGGTGCTGGATCCGGGGGAGGCGCCGCTGGTTCCGGTGTACTCGGGGAAGGTTAAAAGCAGCCTTCGCCTTATCCCAGATGATCTATCCCTCCTGAAACTCTACCCTCCAGGGGATGAGGAAG|ATTTTCATCTTCATTGGAGAGACCCTCCTGTCCATGAACTGGGCCATCGTGGCCGACATTCTGCTGTACGTGGTGATCCCTACCCGACGCTCCACCGCCGAGGCCTTCCAGATCGTGCTGTCCCACCTGC 6 0.9726433952110948 0.442466711119836 0.283579135488706 Y Y 3.229987888500641 3.4278353619737403 3.229987888500641 0 0.992333419089272 0.0 Y 0.0 N Y 934 2325 ENSG00000176953 ENSG00000169682 + - 16 16 28978418 28995869 coding coding NFATC2IP SPNS1 28962128 28985542 + + 0.0 28963525 28994178 + - N - - N SA469 1 0.0 1.0 1 0 1 N Y 0.0 0.0 6 0.8335474854416179 0.7450291684035699 0.8335474854416179 0.7450291684035699 4 - - 0.9473104244541808 HCT116-unstranded 5.0 37014 GGGCATGCACGTGGAAGTGAAGGACCCCGACGGCAAGGTGGTGCTGTCCCGGCAGTACGGCTCGGAGGGCCGCTTCACGTTCACCTCCCACACGCCCGGTGACCATCAAATCTGTCTGCACTCCAATTCTACCAGGATGGCTCTCTTCGCTGGTGGCAAACTG|GTCGCGAGAATCAGGTGCGTCAGCGGCGTCCGGGAACGCCGGAAGAGCCAGTGGAGCGGCTCTGTAGTCCAAAGTACCCCGTCGACCCCAGCACGGCCGCTCCACCGCCTCCTACTAGACCCAGTCCTAGGGACTGCGCAGTCGCAGAGCTCCGTCCGAGTACCGGAAGCCTAGGCCGC 11 1.0 0.6791315176700691 0.606610870981584 Y Y 3.68783934123363 3.418448637985509 3.418448637985509 7 0.993882916882792 0.0 Y 0.0 N N 3547 7893 ENSG00000158604 ENSG00000136271 + - 7 7 44621886 44614650 coding utr5p TMED4 DDX56 44617493 44605016 - - 0.0 44621048 44613788 - + N - 370.176177112566 N SA469 1 0.0 1.0 1 0 1 N Y 0.0 0.0 18 1.08434938371609 1.29089212347153 1.29089212347153 1.08434938371609 4 - 0 0.950627136965594 HCT116-unstranded CGHSA0688 5.0 130074 GGAACTGAGTATGGAAAACCAGTGTTCTCTGGACATGAAAAGCAAACTGAATACAAGTAAACAAGCAGAAAATGGACAACCAGAACCACAAAACAAGGTTCCGGCTGAGGACCTTACATTGACATTCAG|GAAGGTTTATCTTTTGTCCTTGCTGCTCATTGGCTTCTGGGACTGCGTGACCTGTCACGGGAGCCCTGTGGACATCTGCACAGCCAAGCCGCGGGACATTCCCATGAATCCCATGTGCATTTACCGCTCCCCGGAGAAGAAGGCAACTGAGGATGAGGGCTCAGAACAGAAGATCCC 6 0.81665480251011 0.797941967195512 0.4520549068138161 N Y 3.79040344379773 3.369767092576549 3.369767092576549 0 0.0 0.0 Y 0.0 N Y 2320 112 ENSG00000135870 ENSG00000117601 + - 1 1 173991435 173886516 coding coding RC3H1 SERPINC1 173900352 173872947 - - 0.0 173910403 173884057 - + N - 12.7073170731707 N SA469 1 0.0 1.0 1 0 1 Y N 0.0 0.0 5 0.5606160079076371 0.44996811161007705 0.5606160079076371 0.44996811161007705 4 - 0 0.98436969286953 HCT116-unstranded 5.0 79119 CAGAATCGCAGTCTGCCTCAGTCAGATCCTGTATTAAAAGTAACTCTAGCAGTGTCTGATCTTCAAAAGTCCTTGAACTACTGGTGTAATCTACTGGGAATGAAAATTTATGAAAAAGATGAAGAAAAGCAAAGGGCTTTGCTGGGCTATGCTGATAAC|CAGGACCCTTGAACATCTGTGAAGAAATGACTATTCTGCATGGAGGCTTCTTGCTGGCCGAGCAGCTGTTCCACCCTAAGGCACTGGCAGAATTAACAAAGTCTGACTGGGAACGTGTTGGACGGCCCATCGTGGAGGCCTTAAGGGAGATCTCCTCGGCTGCAGCACACTCCCAGCCCT 15 1.0 0.833593474308683 0.7524376852263929 Y Y 3.1119225388122795 3.57233464462502 3.1119225388122795 0 0.0 0.0 Y 0.0 N Y 1987 6461 ENSG00000167699 ENSG00000179409 + - 17 17 685581 657239 coding intron GLOD4 GEMIN4 660337 647654 - - 0.0 674565 651272 - + N - - N SA469 1 0.15337423312883405 1.0 1 0 1 N Y 0.15337423312883405 0.0 13 1.20237380643348 1.31302170273104 1.31302170273104 1.20237380643348 4 - - 0.968313874012871 HCT116-unstranded 5.0 129245 AGAATTTTCTCATCCTGGAGATCCTTAGCAACAATCTGATTGTTGTTCATTGAGGCAAAGGCAAATATCAGGTGGGTGCAGAGAAAGGGGTCCAGGTCATGGGGCAAGATCGAGGCAGGGCCTGGCCGACTGTGTGCCCAGTTGGTGAAATAACACACGAGTTTATGGGCAGC|ACCTGAATCGGAGGCCACTAGAATACCTCTCTCCCCAACCCAAGTGAGGTCAGCCACTCCAGCCTCCGTTTGGACTCCGGCGGAGCAGAAGCCTTCGTTGGGGGCGGCACAGGGGTCCTTAAAAAGCCAGAGGGAGCCGGCCCAGCAGCGCCCACTCAGGCTGGAGGCCCCGAGGAGAAGCGCCCCATCTACG 27 1.0 0.8828398653719131 0.602613886495778 N Y 3.45447218342791 3.54400240599166 3.45447218342791 0 0.994235403443008 0.0 Y 0.0 N Y 1688 3371 ENSG00000085465 ENSG00000116455 - + 1 1 111970399 111991998 coding intron OVGP1 WDR77 111956936 111982512 - - 0.0 111969263 111991241 + - N - 1.93967519716767 N SA469 1 0.0 1.0 1 0 1 Y N 0.0 0.0 49 1.33515128199056 1.41629307260877 1.41629307260877 1.33515128199056 4 - 9.20408163265306 0.983587814839638 HCT116-unstranded CGHSA0371 5.0 129342 TGCAGTGCGCCTGGCTACCTTCCTACCTCGCTGGCTTGGCATCCTCAGCAAAGTGAAGTCTTTGTCTTTGGTGATGAGAATGGGACAGTCTCCCTTGTGGACACCAAGAGTACAAGCTGTGTCCTGAGCTCAGCTGTACACTCCCAGTGTGTCACTGGGCTGGTGTTCTCCCCACACAG|GTGCTGCCCATAAACTCGTGTGTTATTTCACCAACTGGGCACACAGTCGGCCAGGCCCTGCCTCGATCTTGCCCCATGACCTGGACCCCTTTCTCTGCACCCACCTGATATTTGCCTTTGCCTCAATGAACAACAATCAGATTGTTGCTAAGGATCTCCAGGATGAGAAAA 11 0.6228087019052261 0.25214228851653697 0.577647533665676 N Y 3.1459146398350497 3.4451253122330296 3.1459146398350497 0 0.994168707619 0.0 Y 0.0 N Y 3371 1688 ENSG00000116455 ENSG00000085465 + - 1 1 111991998 111970399 coding coding WDR77 OVGP1 111982512 111956936 - - 0.0 111985275 111969263 - + N - - N SA469 1 0.0 1.0 1 0 1 Y N 0.0 0.0 31 1.34990433483023 1.34252780841039 1.34990433483023 1.34252780841039 4 - - 0.90410871847146 HCT116-unstranded CGHSA0371 5.0 393135 TCTTCTTTTTGACAGGAGTCTTTTAGTCCTGCTATACAGCTGCACCTTGTACATCAAGCTCCATGTAATGTTCCTCCTTACCTCTCAAAGAATGAATCAAACCTTGGGGACCTCTTACTGGGCTTTCTTAAATATTATGCTACAGAATTTGA|ACAGATGTAAGCCAGTCAGTAGCTGGGCTTCATCTTGCATATTCCTAGGAGGAAATATGTTTATGAAGTGATGGCAAACGCGGCTGCTGCATTGGTCAGGAATGATAACCGCAGAGGAATTTAAACCCAGCCTTAAGGAGTAGGTAGAATTTACAGTTGCAGAAGTGGAGTATTGTCGGGGC 7 1.0 0.904669235314558 0.537335565325837 Y Y 3.2668017624283303 3.63721963736088 3.2668017624283303 0 0.0 0.0 Y 0.0 N N 506 6035 ENSG00000164329 ENSG00000164309 + - 5 5 78982471 79096063 coding intron PAPD4 CMYA5 78907943 78985700 + + 0.0 78964851 79023365 + - N 0.6743292484343 0.0152298400431657 N SA469 1 0.0 1.0 1 0 2 N Y 0.0 0.0 9 0.88518317038048 1.15811464791446 1.15811464791446 0.88518317038048 4 1.66666666666667 0 0.99036751745489 HCT116-unstranded 5.0 393774 CAAAAAATTTACCCAGAGTCTTTTAGTCCTGCTATACAGCTGCACCTTGTACATCAAGCTCCATGTAATGTTCCTCCTTACCTCTCAAAGAATGAATCAAACCTTGGGGACCTCTTACTGGGCTTTCTTAAATATTATGCTACAGAATTTGA|GTTATCAGACCAGGATGAAGAGGGAAAGATCAAGCAGGAGTATATCATATCTGACCCCTCCTTTTCCATGGTGACAGTCCAAAGGGAAGATAGTGGGATAACCTGGGAAACCAATTCAAGTAGATCTTCTACTCCTTGGGCTTCAGAAGAAAGTCAGACTTCT 11 0.5512844689450551 0.494218698203466 0.496280050502652 Y Y 3.2668017624283303 3.27291628556435 3.2668017624283303 1 0.0 0.0 Y 0.0031645569620253303 N Y 506 6035 ENSG00000164329 ENSG00000164309 + - 5 5 78982471 79096063 coding coding PAPD4 CMYA5 78907943 78985700 + + 0.0 78964851 79024738 + - N - - N SA469 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 8 0.936818855319341 1.18762075359381 1.18762075359381 0.936818855319341 4 - - 0.985252642914707 HCT116-unstranded 5.0 231876 ACGGCTCGATGCTGGACATACTTGACCGGGGTCATCCTAGGGAAAACACTATCCTCTGAGATCCCAGATCATGAGTTTTTCACAGCATATGGTCCTGATTATGTGCTGGAAATCACGCCAAGCTGCCGGCCAGACCGCAATGAGCCCCACCGAATCCAACAAATCCTCAACTACATCAAAGC|ACAACAGCTCCAGCTGGCAGCATCACTTCCCGCCAATTTATCCAACTTCTGCCAAGGCTCTGAAATGCCAACAACGTCGAGGCCTGCACTTGATGTCAAGGGTGGCACCTCACCTGCGAAGGAGGATGCCAACCAAGAGATGAGCTCCGTGGCCTACTCCAACCTTGCGGTGAAAGATCGCAAAGCAGTGGCCATTCTGCACTACCCTGG 3 0.947074164716843 0.8967684632860391 0.886364934627289 Y Y 3.19975734419684 3.44934152969861 3.19975734419684 0 0.0 0.0 Y 0.0080250538265807 N Y 653 75 ENSG00000147099 ENSG00000125931 + - X X 71792953 71527037 intron coding HDAC8 CITED1 71549366 71521488 - - 0.0 71571583 71522784 - + N - - N SA469 1 0.0574162679425837 1.0 1 0 1 Y Y 0.016304347826087 0.0574162679425837 5 1.06959633087641 1.15811464791446 1.15811464791446 1.06959633087641 4 - - 0.951775310604014 HCT116-unstranded 5.0 78526 GCCCACCCCCAAAGAGTCTGGCAATAGCCAAGAACTGGCCAGGGGCCCCCAGGAGAGGACCCCCTGTGGGCCTGCTCTGCGGGAAGGCGAGGCTGCCGCTGTGGAGGGCCCGTGCCCGAGCCAGGAGTCCCTGTCCCAGGAGGAAAACCCGGAACCCACGGAGGATGAAAGGA|AGGAGCAGGAGCGGCTTCGCTTGGAGCAGGAGCGAGAGCAGGAACAGAAGAAGGCCAATAGCCTGGCCAGGCTGGCACATACCCTTCCTGTGGAGGAACCCCGCATGGAGGCGCCACCCCTGCCTCTGTCTCCACCGGCTCCCCCGCCGGCACCCCCACCACCACTTGCCACCCCTGCCCC 19 1.0 0.826577250875725 0.7780494395248821 Y Y 2.94955489687844 3.00822273295264 2.94955489687844 1 0.0 0.0 Y 0.0 N N 3204 3136 ENSG00000127804 ENSG00000070444 + - 17 17 2415185 2304412 coding coding METTL16 MNT 2319343 2287354 - - 0.0 2323551 2298748 - + N - - N SA469 1 0.375690607734807 1.0 1 0 1 Y Y 0.0 0.375690607734807 20 1.29826864989137 1.33515128199056 1.33515128199056 1.29826864989137 4 - - 0.968313874012871 HCT116-unstranded 5.0 329386 TTTGCATTTTATTTGATGTAGGAAAAAAATCTGGATGACAAAGCATATCGTAATATCAAGGAACTGGAAAATTATGCTGAAAACACACAGAGCTCTCTTCTTTACTTAACACTAGAAATATTGGG|CTATTAGTGAAAGATGGTGGATCGCTTGGCAAACAGTGAAGCAAATACTAGACGTATAAGTATAGTGGAAAACTGTTTTGGAGCAGCTGGTCAACCTTTAACTATACCTGGACGAGTTCTTATTGGAGAAGGAGTATTGACTAAG 6 0.0791843701992828 0.5221539289879171 0.0700019638551129 Y Y 3.3461549325185493 3.64553343878587 3.3461549325185493 0 0.0 0.00369003690036906 Y 0.0196309963099631 N Y 367 1536 ENSG00000156170 ENSG00000175895 + - 8 8 96128683 96168912 intron utr5p NDUFAF6 PLEKHF2 95907995 96146032 + + 0.0 96057875 96166259 + - N 0.810475336576761 0.112711150136716 N SA469 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 12 0.796664853342432 0.9958310666780392 0.9958310666780392 0.796664853342432 4 7.83333333333333 4.16666666666667 0.938589093078485 HCT116-unstranded 5.0 329433 TATGCTGCATGGTGTTTCACAAGAGGACTTTCTACGGAGGAACCAAGATAAAAATGTGAGAGATGTAATATATGACATTGCCAGTCAAGCACACTTGCACCTAAAGCATGCTAGGTCCTTTCACAAAACTGTTCCTGTGAAAGCATTTCCTGCTTTTCTTCAGAC|GGCTATTAGTGAAAGATGGTGGATCGCTTGGCAAACAGTGAAGCAAATACTAGACGTATAAGTATAGTGGAAAACTGTTTTGGAGCAGCTGGTCAACCTTTAACTATACCTGGACGAGTTCTTATTGGAGAAGGAGTATTGACTAAGTTGTGCAGGAAAAAGCCCAAAGCAAGGCAGTTTTTCTTGTTTAAT 10 0.801161359600884 0.9548653978025908 0.838540348910417 Y Y 3.32743068490526 3.64553343878587 3.32743068490526 0 0.0 0.0 Y 0.0 N Y 367 1536 ENSG00000156170 ENSG00000175895 + - 8 8 96128683 96168912 coding utr5p NDUFAF6 PLEKHF2 95907995 96146032 + + 0.0 96064458 96166259 + - N - - N SA469 1 0.0 1.0 1 0 2 N Y 0.0 0.0 20 1.23925643853267 1.3794104405095802 1.3794104405095802 1.23925643853267 4 - - 0.982609224966264 HCT116-unstranded 5.0 393274 TTCAAGGATTTTCAGGAGGAAACGGTGAAGGACTATGAAGCTGGCCAACTGTATGGGCTGGAGAAGTTCTGGGCCTTCTTGAAATATTCCAAAGCCAAAAATTTGGACATTGACCCCAAACTGCAAGAATACCTCGGCAAATTCCGACGTCTTGAAGACTTCCGAGTAGAT|GACACAGAATTTCCAGGTGTTGTGGTGCGACCAATTGGTGAATTTCGTAGTTCCATAGATTACCAATATCAGCTTCTGCGGTGCAATGTTGACCTTTTAAAAATTATCCAGCTGGGCCTTACATTCACAAATGAGAAGGGAGAGTATCCTTCTGGAATCAATACTTGGCAGTTC 9 1.0 0.6543457811603921 0.460624651367556 Y Y 3.74913061111987 3.5565722776755897 3.5565722776755897 0 0.0 0.0028901734104047607 Y 0.0028901734104047607 N Y 11825 1491 ENSG00000155506 ENSG00000155508 + - 5 5 154197167 154256353 coding coding LARP1 CNOT8 154092462 154237113 + + 0.0 154191200 154244752 + - N - - N SA469 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 8 1.2613860177921798 1.13598506865495 1.2613860177921798 1.13598506865495 4 - - 0.985956993815758 HCT116-unstranded 5.0 231547 GCAATGCGCACGCGCAGTGGCTTTGAAGGCGGGGCAACAAAGCCTGTGGCCGATGTGGCGCTCCTCGGCCCGCGCTTCAGTGGTTATGACAGTGTTCGCTCTAAGGGGAGAAGGAATGTGTGACCATTTCCAACGGT|CAGTCACCACGAACAGGGGCACTCGGCATGCTGCCCCAGCACTGGAGAAGCAGCGCTGTGGGGGCAATCTGTCACACTCTCAGAGTCTGGGACTTGACTTGCTACCAACAACTGCTGTGCAATTCTGCTGAGCAGGAATATCATGAGCTGTTCAATAATGACGGACGCATTGGTTGAGATGAAGTTTCCAGTAAGGAAGTGACAGTGCAATGTGGAT 5 1.0 0.762407649448097 0.30855835311904 Y Y 3.7255184510618697 3.4367716580146896 3.4367716580146896 0 0.9927212912511568 0.0 Y 0.0 N Y 419 309 ENSG00000230844 ENSG00000147119 + - X X 46407671 46457843 intron utr3p ZNF674-AS1 CHST7 46404928 46433219 + + 0.0 46405062 46457195 + - N - 1.11740499058874 N SA469 1 0.0 1.0 1 0 1 N Y 0.0 0.0 10 0.8040413797622691 1.5785766538451895 1.5785766538451895 0.8040413797622691 4 - 3.7 0.971984932929277 HCT116-unstranded 5.0 381390 CCCAGCCTTCTTTCAGACCACGGTCACCGCCCAGATCCTGCTGAAGGCCCTCACCAACTTGCCGCACACAGACTTCACCCTGTGCAAGTGCATGATCGACCAGGCACATCAAGAAGAACGGCCAATCCGACAGATTTTGTACCTCGGGGACCTGCTGGAGACCTGCCATTTCCAGGCCTTCTGG|ACCTTCACGGCATGGTGCAACTCCCACCTGCGGAAGGCAGGCACACAGATCGAGAACATTGATGAGGACTTCCGAGACGGGCTCAAGCTCATGCTGCTCCTGGAGGTCATATCAGGGGAGCGGTTACCTAAGCCGGAGCGGGGGAAGATGAGAG 22 0.7508179458321959 0.608732047207615 0.21774222626753886 Y Y 3.41592783769912 3.6659225983548303 3.41592783769912 0 0.993525648392905 0.0 Y 0.0 N Y 10057 63661 ENSG00000178982 ENSG00000130402 + - 19 19 39127595 39222223 coding coding EIF3K ACTN4 39109735 39138289 + + 0.0 39116742 39191240 + - N - - N SA469 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 19 1.15811464791446 1.15811464791446 1.15811464791446 1.15811464791446 4 - - 0.954989944164212 HCT116-unstranded 5.0 57584 CTGAGATCCATCTGCACCACGGTGCTGGAATTGTTGGATAAATATTTAATAGCCAATGCAACTAATCCAGAGAGTAAGGTCTTCTATCTGAAAATGAAGGGTGATTACTTCCGGTACCTTGCTGAAGTTGCGTGTGGTGATGATCGAAAAC|AGCTTGTTCATCGAGTGAAAAGAAGAGCTGACCCAGATCCCATGAAGAACACGTGTAAATTATTGGTGGTAGCAGATCATCGCTTCTACAGATACATGGGCAGAGGGGAAGAGAGTACAACTACAAATTACTTAGTAAGTATTTGATATTGCATCGAG 4 0.508489111637764 0.817223254255825 0.112430877337936 Y Y 3.59165088163073 3.49424793801946 3.49424793801946 1 0.0 0.0 Y 0.0 N Y 32292 1972 ENSG00000134308 ENSG00000151694 + - 2 2 9771143 9695921 coding coding YWHAQ ADAM17 9724101 9628615 - - 0.0 9731521 9666373 - + N - 2.4878197274784 N SA469 2 0.0 1.14285714285714 1 1 2 Y Y 0.0 0.0 7 1.1064789629756 0.870430117540805 1.1064789629756 0.870430117540805 4 - 8.14285714285714 0.95812489930962 HCT116-unstranded 5.0 58424 CGACAAGAAGTTGCAGCTGATTAAGGACTATCGGGAGAAAGTGGAGTCCGAGCTGAGATCCATCTGCACCACGGTGCTGGAATTGTTGGATAAATATTTAATAGCCAATGCAACTAATCCAGAGAGTAAGGTCTTCTATCTGAAAATGAAGGGTGATTACTTCCGGTACCTTGCTGAAGTTGCGTGTGGTGATGATCGAAAAC|TTTTCCTGAGTGTTCTCATGACATGAAAGCTGGCTTCCCCCAGAGTGTGTGATTCAAGAGGAAACAAGCAAGCAAGAGAGCACCTGAGATGGAGGACAGAGTTTCTTGTGTCCTAACCTCAGAAGTGACATCACTTCGGCTGCATGCTAGTGGTCACAGACCAACTATGGCCCAGTGTAGAAGA 7 1.0 0.248697230237871 0.230750631794605 Y Y 3.59165088163073 3.4655144718019804 3.4655144718019804 0 0.0 0.0 Y 0.0 N N 32292 1972 ENSG00000134308 ENSG00000151694 + - 2 2 9771143 9695921 coding upstream YWHAQ ADAM17 9724101 9628615 - - 0.0 9731521 9699330 - + N - - N SA469 1 1.0 1.0 1 0 2 N Y 0.0 1.0 7 1.14336159507479 1.24663296495251 1.24663296495251 1.14336159507479 4 - - 0.967816272085553 HCT116-unstranded 5.0 79094 ATCTTGGTTTGCTCTTTGATGCTCTTGATCAGGCAGTTGAAAATCAAAGAGGTCACTCTGGGGAAGTTATATGAAGCCTACAGTAAAGTCTGTCGCAAACAGCAGGTGGCGGCTGTGGACCAGTCAGAGTGTTTGTCACTTTCAGGGCTCTTGGAAGCCAGGGGCATTTTAGGATTAAAGAGAAACAAGGAAACCCGTTTGACAAAG|CATCACAGGACATGGCCCCCTCAGCCACCTAGCTGGGGCCCATCTAGGAGTGGCATCTTTTTTGGTGCCCTGAAGGCCAGCTCTGGACCTTCCCAGGAAAAGTGCCAGCTCACAGAACTGCTTGACCAAAGGACCGGCTCTTGAGACATCCCCCAACCCACCTGGCCCCCAGCTAGGGTGGGGGCTCCAGGAGACTGAGATTAGCCTG 13 0.8382885265239929 0.8591362323342661 0.798298866274136 Y Y 3.0460044763065297 3.25360004855864 3.0460044763065297 0 0.0 0.0 Y 0.0 N Y 3256 4427 ENSG00000094804 ENSG00000131759 + - 17 17 38459171 38513094 coding utr5p CDC6 RARA 38443885 38465444 + + 0.0 38457860 38487109 + - N - - N SA469 1 0.0 1.0 1 0 7 N Y 0.0 0.0 8 1.34990433483023 1.41629307260877 1.41629307260877 1.34990433483023 4 - - 0.974883351681068 HCT116-unstranded 5.0 79096 GTCTTATTCACATATCCCAAGTCATCTCAGAAGTTGATGGTAACAGGATGACCTTGAGCCAAGAAGGAGCACAAGATTCCTTCCCTCTTCAGCAGAAGATCTTGGTTTGCTCTTTGATGCTCTTGATCAGGCAGTTGAAAATCAAAGAGGTCACTCTGGGGAAG|CATCACAGGACATGGCCCCCTCAGCCACCTAGCTGGGGCCCATCTAGGAGTGGCATCTTTTTTGGTGCCCTGAAGGCCAGCTCTGGACCTTCCCAGGAAAAGTGCCAGCTCACAGAACTGCTTGACCAAAGGACCGGCTCTTGAGACATCCCCCAACCCACCTGGCCCCCAGCTAGGGTGGGGGCTCC 24 0.955009838269553 0.671042729516227 0.31758183129662104 Y Y 3.35038049755395 3.25360004855864 3.25360004855864 0 0.0 0.0 Y 0.00283286118980164 N Y 3256 4427 ENSG00000094804 ENSG00000131759 + - 17 17 38459171 38513094 coding utr5p CDC6 RARA 38443885 38465444 + + 0.0 38457282 38487109 + - N - - N SA469 1 0.0 1.0 1 0 7 N Y 0.0 0.0 23 1.20237380643348 1.3941634933492602 1.3941634933492602 1.20237380643348 4 - - 0.979386418111686 HCT116-unstranded 5.0 77967 GGGTTAAATGTGAAAATATTTATGCTTGGGACCTAAATTACAGAGGGAGAATCTTATGGTTCAAACTGTCATCTTCTATGTCTTGTCTGAAGGTATCTAGAGATCAGGTTCTGGACAATGCTGCAGTTCAATTCTGTGCCCGCAAAGTCTCTGCTGTTTCAGGAGATGTTCGCAAAGCACTGGATGTT|TGCAGCATCACAGGACATGGCCCCCTCAGCCACCTAGCTGGGGCCCATCTAGGAGTGGCATCTTTTTTGGTGCCCTGAAGGCCAGCTCTGGACCTTCCCAGGAAAAGTGCCAGCTCACAGAACTGCTTGACCAAAGGACCGGCTCTTGAGACATCCCCCAACCCACCTGGCCCCCAGCTAGGGTGGGGGCT 99 0.7159759645430791 0.919761357251356 0.625656504447515 Y Y 3.55553920790569 3.2829255041685297 3.2829255041685297 8 0.0 0.0 Y 0.0 N Y 3256 4427 ENSG00000094804 ENSG00000131759 + - 17 17 38459171 38513094 coding intron CDC6 RARA 38443885 38465444 + + 0.0 38451708 38487109 + - N 5.73245784683764 0.0554179579306432 N SA469 1 0.0 1.0 1 0 7 N Y 0.0 0.0 6 1.09910243655576 1.14336159507479 1.14336159507479 1.09910243655576 4 34.8333333333333 19.3333333333333 0.9757268776972 HCT116-unstranded 5.0 77023 GCTTCAAGCTAGAGAAAAATGTAAGCCACAGCTGTTGAACTTCCCACCTTATACCAGAAATCAGATAGTCACTATTTTGCAAGATCGACTTAATCAGGTATCTAGAGATCAGGTTCTGGACAATGCTGCAGTTCAATTCTGTGCCCGCAAAGTCTCTGCTGTTTCAGGAGATGTTCGCAAAGCACTGGATGTTTG|CAGCATCACAGGACATGGCCCCCTCAGCCACCTAGCTGGGGCCCATCTAGGAGTGGCATCTTTTTTGGTGCCCTGAAGGCCAGCTCTGGACCTTCCCAGGAAAAGTGCCAGCTCACAGAACTGCTTGACCAAAGGACCGGCTCTTGAGACATCCCCCAACCCACCTGGCCCCCAGCTAGGGTGGGGGCTCCAGGAGACTGAGATTAGCCTGCCCTCTT 160 1.0 0.864537648587532 0.7232569674872941 Y Y 3.4738587784505097 3.2399572543114705 3.2399572543114705 0 0.0 0.0 Y 0.00241545893719808 N Y 3256 4427 ENSG00000094804 ENSG00000131759 + - 17 17 38459171 38513094 coding intron CDC6 RARA 38443885 38465444 + + 0.0 38451708 38487109 + - N - 0.0554179579306432 N SA469 1 0.0 1.0 1 0 7 N Y 0.0 0.0 106 1.4826818103872998 1.64496539162372 1.64496539162372 1.4826818103872998 4 - 1.09433962264151 0.9855187992232192 HCT116-unstranded 5.0 326572 GCTATGAGCAACTGAAGGAAAAGCTGTTGTTTGCCATAGAAGAAACAGAAGGATTTGGACAAGAGTAACTTCTGAGAACTTGCACCATGAATGGGCAAGAACTTATTTGCAATGTTTGTCCTTCTCTGCCTGTTGCACATCTTGTAAAATTGGACAATGGCTCTTTAGAGAGTTATCTGAGT|ACACTCCTGGAAGGAGAACCAAATCCTTCCTCACTGAAGAGCAGCTACTGTGGAATGAAACTTTGGAGTTAGATCATCGTTGAATCCAGCAAGCTACAGTGCCTGGGAGAAACAGCATTTATAAAGTATCGAGGTTACCGATACTTCCCTGAAGCTACCGGAG 8 0.61347975333835 0.9638521722520792 0.667960149336459 Y Y 3.56488607910057 3.38759559906577 3.38759559906577 0 0.0 0.0 Y 0.0 N N 802 4062 ENSG00000078747 ENSG00000125971 + - 20 20 33099198 33128762 utr3p upstream ITCH DYNLRB1 32951041 33104214 + + 0.0 33095713 33102984 + - N 3.88118068571136 - N SA469 1 0.0 1.0 1 0 1 N Y 0.0 0.0 9 1.34990433483023 1.19499728001365 1.34990433483023 1.19499728001365 4 2.22222222222222 - 0.976301241554692 HCT116-unstranded 5.0 393917 GTACCACCCTCGGGTGCTCTACATTGACATTGACATCCACCATGGTGACGGGGTTCAAGAAGCTTTCTACCTCACTGACCGGGTCATGACGGTGTCCTTCCACAAATACGGAAATTACTTCTTCCCTGGCACAGGTGACATGTATGAAGTCGGGGCAGAGAGTGGCCGCTACTACTGTCTGAACGTGCCCCTGCGGGATGGCATTGATGACCAGA|ACTCTGAAGCGGCTCATGGCAGATGAGCTGGAGAGATTTACCAGCATGAGAATTAAGAAGGAGAAGGAAAAGCCCAATTCTGCTCATAGAAATTCTTCTGCATCATATGGGGATGATCCCACAGCACAGTCATTGCAAGATGTTTCAGATGAACAAGTG 4 1.0 0.396753366684867 0.197776405176886 Y Y 3.5393357605787905 3.49272035470961 3.49272035470961 0 0.9937274633123688 0.0 Y 0.0 N N 3315 19381 ENSG00000171720 ENSG00000131504 + - 5 5 141016437 140998622 coding coding HDAC3 DIAPH1 141000443 140894583 - - 0.0 141008126 140967817 - + N - - N SA469 1 0.0 1.0 1 0 2 N Y 0.0 0.0 7 1.29089212347153 1.05484327803674 1.29089212347153 1.05484327803674 4 - - 0.9823630497192142 HCT116-unstranded 5.0 391754 GGCGGCGGCCGCGGGCGGCGGGCGGCGGAGGTGCGGGGCCTGCTCCCGCCGGCACCATGGCCAAGACCGTGGCCTATTTCTACGACCCCGACGTGGGCAACTTCCACTACGGAGCTGGACACCCTATGAAGCCCCATCGCCTGGCATTGACCCATAGCCTGGTCCTGCATTACGGTCTCTATAAGAAGATGATC|CTGGAGAGATTTACCAGCATGAGAATTAAGAAGGAGAAGGAAAAGCCCAATTCTGCTCATAGAAATTCTTCTGCATCATATGGGGATGATCCCACAGCACAGTCATTGCAAGATGTTTCAGATGAACAAGTGCTGGTTCTCTTTGAACAGATGCTGC 6 0.17504019141691698 0.8868974315052172 0.5359980210632079 Y Y 3.84271856484967 3.26501305929329 3.26501305929329 0 0.98729733642154 0.0 Y 0.0 N Y 3315 19381 ENSG00000171720 ENSG00000131504 + - 5 5 141016437 140998622 coding coding HDAC3 DIAPH1 141000443 140894583 - - 0.0 141016115 140966764 - + N - - N SA469 1 0.147368421052632 1.0 1 0 2 Y Y 0.147368421052632 0.0 7 1.05484327803674 0.7892883269225942 1.05484327803674 0.7892883269225942 4 - - 0.981724555104698 HCT116-unstranded 5.0 2517 GGCAAGTCACATGAGCCACCAAAATGGTGGTGTTCGGGTATGAGGCTGGGACTAAGCCAAGGGATTCAGGTGTGGTGCCGGTGGGAACTGAGGAAGCGCCCA|AGGTGATTTGGATTGTGAAACCTGTACCATAACACGGAGTGGACTGACTGGTCTTGTTATTGGTGGTCTATACCCTGTTTTCTTGGCTATACCTGTAAATGGTGGTCTAGCAGCCAGGTATCAATCAGCTCTGTTACCACACAAAG 3 0.261446171334578 0.376357451341014 0.319826124894534 Y Y 3.5597647729410897 3.5497555543369104 3.5497555543369104 0 0.0 0.0 Y 0.0 N Y 1028 639 ENSG00000171204 ENSG00000171202 + - 11 11 85347580 85367591 coding coding TMEM126B TMEM126A 85339629 85359011 + + 0.0 85339732 85366638 + - N - - N SA469 1 0.0 1.0 1 0 3 N Y 0.0 0.0 9 0.597498640006824 0.944195381739178 0.944195381739178 0.597498640006824 4 - - 0.969471912869775 HCT116-unstranded 5.0 2516 TGCTTTGTATTCAGATAATATAAGCAAGGAAAACTGTGTTTTCAGAAGCTCACTGATTGGCATAGTTTGTGGTGTTTTCTATCCCAGTTCTTTGGCTTTTACTAAAAATGGACGCCTGGCAACCAA|GAATCTACTTGAAAATGGATCGGTTTATGTTGGATTAAATGCTGCTCTTTGTGGCCTCATAGCAAACAGTCTTTTTCGACGCATCTTGAATGTGACAAAGGCTCGCATAGCTGCTGGCTTACCAATGGCAGGGATACCTTTTCTTACAACAGACTTAACTTACAGATGTTT 20 0.366970251276836 0.872765413270711 0.7002111092609921 Y Y 3.48639814491089 3.2629469197535097 3.2629469197535097 0 0.0 0.0033557046979867397 Y 0.0033557046979867397 N Y 1028 639 ENSG00000171204 ENSG00000171202 + - 11 11 85347580 85367591 coding coding TMEM126B TMEM126A 85339629 85359011 + + 0.0 85346822 85365107 + - N - - N SA469 1 0.0 1.0 1 0 3 Y Y 0.0 0.0 12 0.8409240118614559 1.09172591013592 1.09172591013592 0.8409240118614559 4 - - 0.991089847505773 HCT116-unstranded 5.0 2515 GGCAAGTCACATGAGCCACCAAAATGGTGGTGTTCGGGTATGAGGCTGGGACTAAGCCAAGGGATTCAGGTGTGGTGCCGGTGGGAACTGAGGAAGCGCCC|AAGGAATCTACTTGAAAATGGATCGGTTTATGTTGGATTAAATGCTGCTCTTTGTGGCCTCATAGCAAACAGTCTTTTTCGACGCATCTTGAATGTGACAAAGGCTCGCATAGCTGCTGGCTTACCAATGGCAGGGATACCTTTTCTTACAACAGACTTAACTTACAGATGTTTTGTAAGTTTTCCTTTGAATAC 5 0.8692255763089991 0.22970884608977696 0.154548331631652 Y Y 3.5110433747387795 3.41526549028982 3.41526549028982 0 0.0 0.0 Y 0.0 N Y 1028 639 ENSG00000171204 ENSG00000171202 + - 11 11 85347580 85367591 coding utr5p TMEM126B TMEM126A 85339629 85359011 + + 0.0 85339732 85365107 + - N - - N SA469 1 0.0 1.0 1 0 3 Y Y 0.0 0.0 12 0.678640430625034 1.09172591013592 1.09172591013592 0.678640430625034 4 - - 0.940715024041746 HCT116-unstranded 5.0 1648 ACTGACAAGCTTTTTGTAATTGATGCTTTGTATTCAGATAATATAAGCAAGGAAAACTGTGTTTTCAGAAGCTCACTGATTGGCATAGTTTGTGGTGTTTTCTATCCCAGTTCTTTGGCTTTTACTAAAAATGGACGCCTGGCAACCAA|GAATCTACTTGAAAATGGATCGGTTTATGTTGGATTAAATGCT 14 2.24988433525449e-06 0.301062402457432 0.819674837972399 Y Y 3.48639814491089 3.2629469197535097 3.2629469197535097 0 0.0 0.0 Y 0.0 N Y 1028 639 ENSG00000171204 ENSG00000171202 + - 11 11 85347580 85367591 coding coding TMEM126B TMEM126A 85339629 85359011 + + 0.0 85346822 85365107 + - N - - N SA469 1 0.0 1.0 1 0 3 Y Y 0.0 0.0 5 0.8409240118614559 0.730276115563896 0.8409240118614559 0.730276115563896 4 - - 0.9276545191089508 HCT116-unstranded 5.0 359663 ACATGATTTTACAAGTATAACAGTTTTGAGTAATTCAAGCCTCTAAACAGACAGGAATTTAGAAAAAGTCAATGTACTTGTTTGAATATTTGTTTTAATACCACAGCTATTTAGAAGCATCATCACGACACATTTGCCTTCAGTCTTG|CACTTTATTTGCAACAAGTTTAGTTGCTCCTGAAGGGCAGGATCTCTGCCGGAAGCAAGTGCGTGCCACACAGTGGGGCTCCGCATACACTGCAAAAGGACAAATAAACCGAACAGCTACCGTTTGAGAGTGAGCGAGTGGGTTCTCTGCACAAGAACAAACCAACCAGTC 9 0.828588151045793 0.246890783706754 0.548086505793546 Y Y 3.55231620741665 3.48639814491089 3.48639814491089 0 0.0 0.0 Y 0.0 N N 2487 6158 ENSG00000213341 ENSG00000107566 + - 10 10 101989376 101948091 utr3p utr5p CHUK ERLIN1 101948055 101909851 - - 0.0 101949057 101946199 - + N - - N SA469 1 0.0 1.0 1 0 2 N Y 0.0 0.0 8 1.00320759309788 1.23925643853267 1.23925643853267 1.00320759309788 4 - - 0.977310941991032 HCT116-unstranded 5.0 359484 AGAACATGATCATTCTCTGTCATGTGTGGTAACTCCTCAAGATGGGGAGACTTCAGCACAAATGATAGAAGAAAATTTGAACTGCCTTGGCCATTTAAGCACTATTATTCATGAGGCAAATGAGGAACAGGGCAATAGTATGATG|CACTTTATTTGCAACAAGTTTAGTTGCTCCTGAAGGGCAGGATCTCTGCCGGAAGCAAGTGCGTGCCACACAGTGGGGCTCCGCATACACTGCAAAAGGACAAATAAACCGAACAGCTACCGTTTGAGAGTGAGCGAGTGGGTTCTCTGCACAAGAACAA 7 0.45137202551527 0.310179257379814 0.184848662113235 Y Y 3.3791139637714305 3.48639814491089 3.3791139637714305 0 0.0 0.0 Y 0.0 N N 2487 6158 ENSG00000213341 ENSG00000107566 + - 10 10 101989376 101948091 coding utr5p CHUK ERLIN1 101948055 101909851 - - 0.0 101950626 101946199 - + N - - N SA469 1 0.0 1.0 1 0 2 N Y 0.0 0.0 9 1.02533717235739 0.944195381739178 1.02533717235739 0.944195381739178 4 - - 0.967987026656542 HCT116-unstranded 5.0 211156 GGAACATAAGAAGTTGTTTCTGGTTCAGCTTCAAGAAAAAGCCTTGTTTGCAGTCCCTAAAAATTACAAGCTGGTAGCTGCACCATTGTTTGAATTGTATGACAATGCACCAGGATATGGACCCATCATTTCTAGTCTCCCTCAGCTGTTGA|GCAGGTTCTAGTAAATACCGCTTGCTGTGTTTTGATGTTGGTGGCTAAGCTCATCCAGTGTATTGTGTTTGGCCCTCTTCGAGTGAGTGAGAGACAGCATCTCAAAGACAAATTTTGGAATTTTATTTTCTACAAGTTCATTTTCATCTTTGGTGTGCTGAATGTCCAGACAGTGGAAGAGGTGGTCATGT 8 1.0 0.496649454679869 0.585951834384455 Y Y 3.49744043328497 3.5529785548259505 3.49744043328497 0 0.0 0.0 Y 0.0 N Y 6502 6096 ENSG00000167005 ENSG00000159461 + - 16 16 56486111 56459450 coding utr5p NUDT21 AMFR 56463045 56395364 - - 0.0 56468243 56448256 - + N - - N SA469 2 0.0 1.125 1 1 1 N Y 0.0 0.0 8 1.00320759309788 1.21712685927316 1.21712685927316 1.00320759309788 4 - - 0.957295974804937 HCT116-unstranded 5.0 131331 CAGGAGCTGGGACGATCCTTGCAGGAACCTCAGGATTACAGCAGGTGCAGATGGCAGGAGCTCCAAGCCAGCAGCAGCCAATGCTCAGTGGGGTACAAATGGCTCAGGCAGGTCAACCAGGGAAAATGCCAAGTGGAATAAAAACCAACATCAAGTCGGCTTCCATGCATCCCTACCAGC|GATCCAGTTTGTCCTGGTCTCACTGCACATCTCCCAGTACTACTTTATGTCCAGCTGTAACTACCAGTACCCAGTCATTATTCACCTCATCTGGATGTATGGCACCATCTTCTTCATGCTGTTCTCCAACTTCTGGTATCACTCTTATACCAAGG 2 0.647274984231827 0.7810088108599029 0.695912575769829 Y Y 3.53296011761759 3.44040523365767 3.44040523365767 0 0.993567588325653 0.0 Y 0.0 N Y 2532 2743 ENSG00000159479 ENSG00000066322 + - 1 1 43855479 43833697 coding intron MED8 ELOVL1 43849588 43829068 - - 0.0 43850717 43829808 - + N - 3.48776046453532 N SA469 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 5 1.2613860177921798 0.922065802479666 1.2613860177921798 0.922065802479666 4 - 146.2 0.982741001326729 HCT116-unstranded CGHSA0334 5.0 193045 TGAGGAAGATTCATATCTCCTGATGCTCCATGTGTAAGAATTATTCCATATGTTAAGCTCTTGTTAGGTACCAAACAAACAGCATCTAGTAATTTATTTCCAAAAGGTATTTTTAATTTA|ACCTCTTCATCGTGATCTTTCGCCCATTTAAGTTTTTCTAGCAGATCGCTCAGGTTGCTCTTAACTGGAATGTAGTGTTTCCAGGGCTGCAGCTCATTGTAAAAATGTTCATAGTAGATGGAATCCTGCTTCAGCACAACACTGTCACCAACTAGCAAATATGGCAGGCGATAAG 13 0.532396090446996 0.4990914357843029 0.636390855943166 Y Y 2.99831614787411 3.3289582682151098 2.99831614787411 1 0.0 0.0 Y 0.0 N Y 372 240 ENSG00000151287 ENSG00000134901 - + 13 13 103426161 103451357 coding intron TEX30 KDELC1 103418340 103436631 - - 0.0 103421891 103441362 + - N - 0.234720002245297 N SA469 2 0.0 1.08333333333333 1 1 1 N Y 0.0 0.0 12 0.752405694823408 0.8778066439606421 0.8778066439606421 0.752405694823408 4 - 0.666666666666667 0.906402906883256 HCT116-unstranded 5.0 37281 TCCAGGAGCGTCTTTCTCAGGAATGCCCGATCAAGGAGGTGGTGCTTTATGTCAAAGAAGAAATGAAGAGGAATGATCTTCCAGAAACAGCAGTGATTGGTCTTCTGTGGACATGTATAATGAACGCTGTTGAGTGGAACAAGAAGGAAGAACTTGTTGCAGAGCAGGCTCTGAAGCACCTGA|AGTTGGTTAGTCTGCTGCTAATTGGAATTGCTGCGTGGGGCATTGGCTTCGGGCTGATTTCCAGTCTCCGAGTGGTCGGCGTGGTCATTGCAGTGGGCATCTTCTTGTTCCTGATTGCTTTAGTGGGTCTGATTGGAGCTGTAAAACATCATCAGGTGTTGCTATTTTT 61 0.9634285560599491 0.896446389889019 0.703673930437855 Y Y 3.4937534244795 3.4152256374964702 3.4152256374964702 0 0.0 0.0 Y 0.0 N Y 8926 1730 ENSG00000136261 ENSG00000106537 + - 7 7 16746148 16824161 coding intron BZW2 TSPAN13 16685756 16793160 + + 0.0 16736686 16815836 + - N - 0.137125213342865 N SA469 1 0.0 1.0 1 0 3 Y Y 0.0 0.0 69 1.36465738766991 1.25400949137235 1.36465738766991 1.25400949137235 4 - 1.88405797101449 0.98975341396599 HCT116-unstranded 5.0 392196 GAGCGCGCGCGGTCGCGTGCGGGAGGGGGCGGGTGGGGAAGGATCGCAGGCGAGATTACGAGGCGAGGCTCGCGCGCCCGCCCCCGCCCTGGCCCCCAGTGCCCACCCGGTCGGCCCGGCACAGCCATGATCAAGGCGATCCTAATCTTCAACAACCACGGGAAGCCGCGGCTCTCCAAGTTCTACCAGCCCTAC|TGCCTCCTGATGCTTGCAATCTCATTCCCAATTCACCAGCGTGCGTGAATGCAGACTCCAGATCCAGCGCAGACGCCAAGAATTCGCTCAGGGGCACCAGCTAAATAGCAAACAGATGCCATGTCAAACATGTGAAAGCCTCAGCGACTAGGGTACCGCCGGGAAAACCAGTTCCAGCCCAGGAATTTCTGGGTGGAAACACTGGCCG 28 0.791563693140478 0.5842357038542919 0.7126065913024001 Y Y 3.5429693362217702 3.35566963758278 3.35566963758278 0 0.0 0.0 Y 0.0 N N 10328 713 ENSG00000177879 ENSG00000172901 + - 5 5 115249778 115394680 coding upstream AP3S1 LVRN 115177178 115298151 + + 0.0 115177803 115297135 + - N - - N SA469 2 0.0 1.5 1 16 2 N Y 0.0 0.0 32 1.44579917828812 1.57120012742535 1.57120012742535 1.44579917828812 4 - - 0.9453631569257142 HCT116-unstranded 5.0 392949 ATCGCAGGCGAGATTACGAGGCGAGGCTCGCGCGCCCGCCCCCGCCCTGGCCCCCAGTGCCCACCCGGTCGGCCCGGCACAGCCATGATCAAGGCGATCCTAATCTTCAACAACCACGGGAAGCCGCGGCTCTCCAAGTTCTACCAGCCCTAC|GGCCCTGTTAGCGTCCCAGCTGGAACCAACATTTGCCAGGTATGTTTTCCCTTGTTTTGATGAGCCAGCTCTGAAGGCAACTTTTAATATTACAATGATTCATCATCCAAGTTATGTGGCCCTTTCCAACATGCCAAAGCTAGGTCAGTCTGAAAAAGAAGATGTGAATGGAAGCAAATGGACTGTTACAACCTTTTCCACTACGCCCCACATGCCAACTTACT 8 1.0 0.511107606709698 0.44245003756275 Y Y 3.5429693362217702 3.64127736852694 3.5429693362217702 0 0.0 0.0 Y 0.0 N Y 10328 713 ENSG00000177879 ENSG00000172901 + - 5 5 115249778 115394680 coding coding AP3S1 LVRN 115177178 115298151 + + 0.0 115177803 115318984 + - N - - N SA469 2 0.0 1.42857142857143 1 3 2 N Y 0.0 0.0 7 1.13598506865495 1.23187991211283 1.23187991211283 1.13598506865495 4 - - 0.935262853906797 HCT116-unstranded 5.0 326646 GGCGCGGCGGCGCGGGAGTTGGTTCTAAAGAGTGGTGAGTCAGAAGAGACGTCAGGCAGCAAGCGACTTGGGCCATGGCCTCTGACCTAGACTTCTCACCTCCGGAGGTGCCCGAGCCCACTTTCCTGGAGAACCTGCTACGGTACGGACTCTTCCTGGGAGCCATCTTCCAGCTCATCTGTGTGCTGGCCATCATCGTACCCATTCCCAAGTCCCACGAGGCG|AACAGAGAACAGAAGCTCAGAGAAGTGAAGCAACTTGCCCAGCTATGAGAGACAGAGCCAGGATTTGAAACCAGATGAGGACGCTGAGGCCCAGAGAGGGAAAGCCACTTGCCTAGGGACACACAGCGGGGAGAGGTGGAGCAGGGCCTCTAT 14 0.660277893764348 0.6100540815709821 0.35164258309550106 Y Y 3.6000045358490698 3.18758870009704 3.18758870009704 0 0.0 0.0 Y 0.0 N Y 1792 3577 ENSG00000101363 ENSG00000197122 + - 20 20 35945663 36034453 coding utr5p MANBAL SRC 35918041 35973088 + + 0.0 35929816 35993607 + - N - - N SA469 2 0.512987012987013 1.6 1 6 2 N Y 0.0 0.512987012987013 10 1.224503385693 1.13598506865495 1.224503385693 1.13598506865495 4 - - 0.9192868979493 HCT116-unstranded 5.0 329704 ATGAATCCTGTGGAGCATCCTTTTGGAGGTGGCAACCACCAGCACATCGGCAAGCCCTCCACCATCCGCAGAGATGCCCCTGCTGGCCGCAAAGTGGGTCTCATTGCTGCCCGCCGGACTGGACGTCTCCGGGGAACCAAGACTGTGCAGGAGAAAGAGAACTAGTGCTGAGGGCCTCAATAAA|GCCAAATAGTTGCATCACATGTATCTAATCCGAGAGTCTCATGCTTCTGCTCCTCAGTGACCAGCTCCTGCTCACTGCCCTCAGAAAGCCCAACCCTCAGGCAATGGCGGCCTTGTTCCTGTC 111 0.9863372854420008 0.6970310580259921 0.752888558220813 Y Y 3.40744620240479 3.6759318169590096 3.40744620240479 1 0.0 0.0 Y 0.0 N Y 139315 5175 ENSG00000161016 ENSG00000196378 + - 8 8 146017972 146012730 utr3p utr5p RPL8 ZNF34 146015150 145997611 - - 0.0 146015170 146005665 - + N - - N SA469 3 0.0 2.375 2 8 2 N Y 0.0 0.0 8 1.12123201581527 0.6712639042051971 1.12123201581527 0.6712639042051971 4 - - 0.936266470121992 HCT116-unstranded 5.0 329641 GTGGCCATGAATCCTGTGGAGCATCCTTTTGGAGGTGGCAACCACCAGCACATCGGCAAGCCCTCCACCATCCGCAGAGATGCCCCTGCTGGCCGCAAAGTGGGTCTCATTGCTGCCCGCCGGACTGGACGTCTCCGGGGAACCAAGACTGTGCAGGAGAAAGAGAACTAGTGCTGAGGGCCTCAATAAAG|CCAAATAGTTGCATCACATGTATCTAATCCGAGAGTCTCATGCTTCTGGTAGCTCCTCAGTGACCAGCTCCTGCTCACTGCCCTCAGAAAGCCCAACCCTCAGGCAATGGCGGCCTTGTTCCTGTCTGCCCCACCCCAGGCCGAGGTGACCTTCGAGGACGTGGCTGTGTACCTCTCCCGGGAGGAATGGGGCCGCCTGGGCCCTGCTC 125 1.0 0.90516347263892 0.632557192178147 Y Y 3.35253057547976 3.63465898428114 3.35253057547976 2 0.0 0.00249376558603498 Y 0.00249376558603498 N Y 139315 5175 ENSG00000161016 ENSG00000196378 + - 8 8 146017972 146012730 utr3p utr5p RPL8 ZNF34 146015150 145997611 - - 0.0 146015170 146005665 - + N - - N SA469 4 0.0 2.3047619047619 1 85 2 Y Y 0.0 0.0 105 1.4236695990286 1.5785766538451895 1.5785766538451895 1.4236695990286 4 - - 0.923297582438714 HCT116-unstranded 5.0 78643 AAAAAATACCCCAAGGAAAGGTCACTCACTAACAAAGCCAGTATGAGTAGAAGATTATTTTATGGAGGAGGATAAGAAAAGAGCTGAAAAGACTCCTTTGATTCGCTAAATAATTTTGCACCTGGGCTCCCGCCTTCTATGGCATGGAGAGCGAGCGGAAGTGGCTGCAG|CTGTGAAGCCAGCCAAGCCCTGCCAGCTTCCCTAGCTCTGGGGGAGGAGGAGGAGGCCTCTTGCTCAGGGGAGCTGTCACCAGCCTGCAAGCCCACTGTCCTAGCCACACTGTGAAACTGGAGGTGGCACTTCCCACAGCAGCTTCAGCGGAACCCAGGGACGCCACCAGAGGCA 7 1.0 0.7288289145547869 0.558543656519736 N Y 3.6282434885265897 3.1940041958516003 3.1940041958516003 0 0.0 0.0 Y 0.0087555253315198 N N 193 8311 ENSG00000070526 ENSG00000182534 - + 17 17 74639920 74707098 intron intron ST6GALNAC1 MXRA7 74620843 74668633 - - 0.0 74630228 74677857 + - N 1.12258467287095 1.28190758535765 N SA469 1 0.611764705882353 1.0 1 0 2 N N 0.611764705882353 0.0 8 1.25400949137235 1.2835155970516998 1.2835155970516998 1.25400949137235 4 0 137.375 0.9855187992232192 HCT116-unstranded 5.0 325608 CAGCACGAGCTCAAATTCCGAGGTCCCTTCACCGATGTTGTCACCACCAACCTAAAGCTTGGCAACCCGACAGACCGAAATGTGTGTTTTAAGGTGAAGACTACAGCACCACGTAGGTACTGTGTGAGGCCCAACAGCGGAATCATCGATGCAGGGGCCTCAATTAATGTATCTG|ATGTCTTGAACAAGTCAGCAAAGAAAAACAGTTCCGCCTTTGGAATGTATGAAAATGAAGACCGTTGCAGGAGGTCTTGAGCCACAGAGCTGGCTCCAGAGGCATTGGGAGGAGAAACGCGGCAGGCCTGGCTCACTCATTATATTTCAAGATCT 16 0.7368805792941271 0.8797758520678199 0.788560981881261 N Y 3.68105312311849 3.49744043328497 3.49744043328497 5 0.993567878374428 0.0 Y 0.0 N Y 1569 124 ENSG00000124164 ENSG00000231290 + - 20 20 57026157 57194944 coding intron VAPB APCDD1L-AS1 56964178 57090435 + + 0.0 56993419 57193796 + - N - - N SA469 1 0.0 1.0 1 0 1 N N 0.0 0.0 7 1.24663296495251 1.13598506865495 1.24663296495251 1.13598506865495 4 - - 0.936162323267528 HCT116-unstranded 5.0 37253 ATGCCACCTTTGCCCGGGTGCCAGTGGCAACCTACACCAACTCCTCACAACCCTTCCGGCTAGGAGAGCGCAGCTTTAGCCGGCAGTATGCCCACATTTATGCCACCCGCCTCATCCAAATGAGACCCTTCCTGGAGAACCGGGCCCAGCAGCACTGGG|CTCCGAAGCGACACATGTTGTGATGGAAGAGACCTCAGCAGAGGAGGCCGTCAGCTGGCAGGAGCGCAGGATGGCAGCTGCTCCCCCGGGTTGCACCCCCCCAGCTCTGCTGGACATAAGCTGGTTAACAGAGAGCCTGGGAGCTGGGCAGCCTGTACCTGTGG 2 0.9584600820114691 0.7108812301400809 0.920711157443295 N Y 3.39640391403071 3.74015446228557 3.39640391403071 0 0.0 0.0 Y 0.0 N Y 14911 650 ENSG00000106628 ENSG00000122678 + - 7 7 44163957 44122139 coding coding POLD2 POLM 44154286 44111846 - - 0.0 44161433 44120515 - + N - - N SA469 1 0.0 1.0 1 0 1 N N 0.0 0.0 5 0.6712639042051971 0.944195381739178 0.944195381739178 0.6712639042051971 4 - - 0.964364733395244 HCT116-unstranded 5.0 36804 GAGGGCCCACACTCTACTGTCCCCACCATCAGCCAACAATGCCACCTTTGCCCGGGTGCCAGTGGCAACCTACACCAACTCCTCACAACCCTTCCGGCTAGGAGAGCGCAGCTTTAGCCGGCAGTATGCCCACATTTATGCCACCCGCCTCATCCAAATGAGACCCTTCCTGGAGAACCGGGCCCAGCAGCACTGGG|ATGGAAATGTTTGACCCATCTGGAATTTATTTTGGTGTTAAGGAATGAGGAAGGGCACCAACTTCTATTTTTCCAAATGGCCTGCCAGTTGTCCTAATGCCATTCGACTGAAAAATCTTCCCGCGTGTTTGAAGCGACCGCCCCACCAGCGCATTGGAAACC 6 0.902733401714571 0.531440205296067 0.0458403196790826 N Y 3.39640391403071 3.14640915337501 3.14640915337501 0 0.0 0.0 Y 0.0 N N 14911 650 ENSG00000106628 ENSG00000122678 + - 7 7 44163957 44122139 coding upstream POLD2 POLM 44154286 44111846 - - 0.0 44161433 44122783 - + N - - N SA469 1 0.765957446808511 1.0 1 0 1 N N 0.0 0.765957446808511 9 1.4015400197690902 1.38678696692942 1.4015400197690902 1.38678696692942 4 - - 0.9190864552945052 HCT116-unstranded 5.0 276186 GTGGACAAGGTCCTGGAGAGGGACCAGAAGCTGTCAGAGCTGGATGACCGAGCTGATGCCTTGCAGGCAGGAGCATCACAATTTGAGAGCAGTGCTGCCAAGCTAAAGAGGAAGTATTGGTGGAAAAACTGCAAGATGATGATCATGCTGGGAGCCATCTGTGCCATCATCGTGGTAGTTATTGTAA|GTAGACCCAGTGTAATCACAAGCATCCTTGTAAGTGGCAAAGAGGCAGAGGAGACAGCGCCAGAGAGGCAGCTGCATGAGAAGGATCAAGATGTTGCTGACTTTGAAGTTGGAAGAAGAAGGCCATGAGCCTCAGTATGTGGGCGGCTTCTAGAAGCTGGAAGGGGCAAGGAGATGGATTT 4 0.69965317571926 0.589694766402774 0.373100376892302 Y Y 3.6759318169590096 3.64400585547602 3.64400585547602 1 0.994490110646963 0.0 Y 0.0 N Y 242 57 ENSG00000139190 ENSG00000215039 + - 12 12 6580153 6560733 coding intron VAMP1 CD27-AS1 6571403 6548167 - - 0.0 6574056 6548842 - + N - - N SA469 1 1.0 1.0 1 0 2 N Y 0.0 1.0 12 1.21712685927316 1.25400949137235 1.25400949137235 1.21712685927316 4 - - 0.9870114830054008 HCT116-unstranded 5.0 276099 GTGGACAAGGTCCTGGAGAGGGACCAGAAGCTGTCAGAGCTGGATGACCGAGCTGATGCCTTGCAGGCAGGAGCATCACAATTTGAGAGCAGTGCTGCCAAGCTAAAGAGGAAGTATTGGTGGAAAAACTGCAAGATGATGATCATGCTGGGAGCCATCTGTGCCATCATCGTGGTAGTTATTGTAA|AGTCTTGCTTTGTCGCCCAGGTTGGAGTGCAGTGGCACGATCTCGGCTCAGTGCAACCTCCGCCTCCTGAGTTCAAGTGATTCTCCTGCCTCAGCCTCCCTAGTAGCTGGGATTACAGGACAAGGAGAGGGACAAATTCCTTCTTGGCATCCTTAT 11 1.0 0.8242614681287429 0.620886077130753 Y Y 3.6759318169590096 3.4378445805779303 3.4378445805779303 0 0.993608378056053 0.0 Y 0.0 N Y 242 57 ENSG00000139190 ENSG00000215039 + - 12 12 6580153 6560733 coding intron VAMP1 CD27-AS1 6571403 6548167 - - 0.0 6574056 6557923 - + N - - N SA469 30 0.7579617834394901 11.7777777777778 1 6 2 N Y 0.0 0.7579617834394901 9 1.3203982291508798 1.15811464791446 1.3203982291508798 1.15811464791446 4 - - 0.905853793167214 HCT116-unstranded 5.0 223783 TAGCCTTCAAGACGCACTGAGCAGGGCTCGGGAGCGAAGGCTGCTAGAGGGCTATGAGATCTATGTGACCCCTGGAGTCCAGCCACCACCACCTCAGATGGGAGAGATTATTAGCTGCTGTGGAGGCACATACCTACCCAGCATGCCTCGGTCCTATAAG|ATGGGAAAACTAGACGAGCTGAGATTCAACCCACGTGAGCGGCTGCAGAGCCGCTACCCTTAACAGCTCTCTCTCGGGATTCTAACATTCCCTTCTGTGACGGAGAGACAGCAGGCCGGGACACGCATCCCAGGACGGATCCACAGCTGGATGGGGAAGGCTGCGCCAGGCGGGCCGGAAGCCTG 4 0.8442880627187109 0.452572625059155 0.165784344157028 N Y 3.700409212917549 3.57063922744582 3.57063922744582 0 0.993768063583815 0.0 Y 0.283327312138728 N Y 4622 1233 ENSG00000137337 ENSG00000137404 + - 6 6 30685666 30659197 coding utr5p MDC1 NRM 30667584 30655824 - - 0.0 30670330 30659058 - + N - - N SA469 1 0.0 1.0 1 0 1 N N 0.0 0.0 11 1.0474667516169 1.23187991211283 1.23187991211283 1.0474667516169 4 - - 0.9570370692702992 HCT116-unstranded 5.0 225776 GCCTAAGTTTTTGACTAAAGGCCAGAATGCATTGGTAGAGCTACAGACACAAAGACCAATAGCTCTTGAGCTATATAAAGACTTTAAAGAGCTGGGGAGGTTCATGCTACGTTACGGTGGTTCTACAATAGCTGCTGGTGTTGTCACT|GAGATCGAAGCCGCGGTCAAGGCCGCCAGAGAAGCCTTTCCCAGCTGGTCATCCCGCAGCCCCCAGGAGCGCTCACGGGTCCTGAACCAGGTGGCGGATTTGCTGGAGCAGTCCCTGGAGGAGTTTGCCCAGGCCGAGTCTAAAGACCAAGGGAAAACCTTAGCACTGGCAAGAACCATGGACATTCCCCGG 6 1.0 0.7009656763125971 0.685056249300261 Y Y 3.60888739872753 3.4001654707496898 3.4001654707496898 0 0.966315288895934 0.0 Y 0.07030197352778 N Y 3992 624 ENSG00000112339 ENSG00000118514 + - 6 6 135424194 135271260 coding coding HBS1L ALDH8A1 135281516 135238528 - - 0.0 135287467 135265104 - + N - - N SA469 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 8 0.907312749639992 1.36465738766991 1.36465738766991 0.907312749639992 4 - - 0.98588676816765 HCT116-unstranded 5.0 128723 CTGACAAGGAAAAGATCACATCTCTTCCAACAGTGACAGTAACTCAGGAACAAGTTGATATGGGTTTAGAGTGTCCAGTATGCAAAGAAGATTACACAGTTGAAGAGGAAGTCCGGCAGTTACCTTGCAATCACTTCTTTCACAGCAGTTGTATTGTGCCGTGGCTAGAACTG|AAATGACCTCCACCTTCAACCCCCGAGAATGTAAACTGTCCAAGCAAGAAGGGCAAAACTATGGCTTCTTCCTGCGAATTGAGAAGGACACCGAGGGCCACCTGGTCCGGGTGGTTGAGAAGTGTAGCCCAGCAGAGAAGGCTGGCCTTCAAGAT 16 1.0 0.5921727181435921 0.132668080340831 N Y 3.71720464963688 3.39384326095097 3.39384326095097 0 0.0 0.0 Y 0.0 N Y 539 169 ENSG00000121848 ENSG00000174827 + - 1 1 145690661 145764074 coding utr5p RNF115 PDZK1 145611036 145726918 + + 0.0 145687091 145747042 + - N - - N SA469 1 0.0 1.0 1 0 1 N N 0.0 0.0 12 1.13598506865495 1.1286085422351102 1.13598506865495 1.1286085422351102 4 - - 0.9642468903432472 HCT116-unstranded 5.0 239868 GGGCGGGACGAGGAGAAGCCAAACGTAAAGACACCAGGAGTTTCTCGGGCCCAGCTGTGGCTGCTGCCGGGGAGCCCCAAGCCTTGGCGGGTCCTTGCGGCGAATAGGAGTCTGGTCAGGCGTCAGGCTAGTCCGACGAAGAGTGGAGAATTTCAAGATTGTGGAGTTGGACTGAATGCTGCACAGTTCAAACAGCTGCTTATTTCGGCTGTGAAGGACCTGTTTGGGGA|GCACCCTTACATCTATCGGGTTACCTTTGCCACAGCTAATGAATCCTCAGCGTTGCTAATTAGGATGTTTAACGAAAAGGGAACAT 3 0.0926471396288145 0.59557423266466 0.49016960890366 Y Y 3.6000045358490698 3.51935717616377 3.51935717616377 0 0.0 0.00315457413249209 Y 0.0 N Y 282 1124 ENSG00000163684 ENSG00000168297 + - 3 3 58305816 58411748 coding coding RPP14 PXK 58291974 58318607 + + 0.0 58296318 58380725 + - N - - N SA469 1 0.0 1.0 1 0 6 Y Y 0.0 0.0 5 0.641757798525848 0.826170959021781 0.826170959021781 0.641757798525848 4 - - 0.977159570856338 HCT116-unstranded 5.0 239391 GTTTCTCGGGCCCAGCTGTGGCTGCTGCCGGGGAGCCCCAAGCCTTGGCGGGTCCTTGCGGCGAATAGGAGTCTGGTCAGGCGTCAGGCTAGTCCGACGAAGAGTGGAGAATTTCAAGATTGTGGAGTTGGACTGAATGCTGCACAGTTCAAACAGCTGCTTATTTCGGCTGTGAAGGACCTGTTTGGGGAGG|AATATATTATTCGAGTGCAAAGAGGAATTTCTGTGGAAAACAGCTGGCAGATTGTTAGAAGATACAGTGACTTTGATTTGCTTAACAACAGCTTACAGATTGCAGGCCTAAGTCTACCTCTTCCTCCCAAAAAATTGATTGGTAACATGGATCGTGAATTCATAGCTGAAAGGCAGAAAGGTCTTCAGAACTATCTCAACGTGATCACAACAAATCATATCTTGTCTAATTGTGAGCTGGTTAAGAAGTTTT 16 3.0265377058120607e-06 0.8303338957400942 0.322095198243901 Y Y 3.53937561337214 3.43681151080804 3.43681151080804 0 0.0 0.0 Y 0.00224215246636761 N Y 282 1124 ENSG00000163684 ENSG00000168297 + - 3 3 58305816 58411748 intron coding RPP14 PXK 58291974 58318607 + + 0.0 58296318 58351601 + - N - - N SA469 1 0.0103092783505155 1.0 1 0 6 Y Y 0.0103092783505155 0.0 6 1.4015400197690902 0.826170959021781 1.4015400197690902 0.826170959021781 4 - - 0.963687918647525 HCT116-unstranded 5.0 239388 GGGACGAGGAGAAGCCAAACGTAAAGACACCAGGAGTTTCTCGGGCCCAGCTGTGGCTGCTGCCGGGGAGCCCCAAGCCTTGGCGGGTCCTTGCGGCGAATAGGAGTCTGGTCAGGCGTCAGGCTAGTCCGACGAAGAGTGGAGAATTTCAAGATTGTGGAGTTGGACTGAATGCTGCACAGTTCAAACAGCTGCTTATTTCGGCTGTGAAGGACCTGTTTGGGGA|GGAATATATTATTCGAGTGCAAAGAGGAATTTCTGTGGAAAACAGCTGGCAGATTGTTAGAAGATACAGTGACTTTGATTTGCTTAACAACAGCTTACAGATTGCAGGCCTAAGTCTACCTCTTCCTCCCAAAAAATTGATTGGTAACATGGATCGTGAATTCATAGCTGAAAGGCAGAAAGGTCTTC 12 0.174117332681473 0.691853914650252 0.188072497470329 Y Y 3.6000045358490698 3.5016965035439 3.5016965035439 0 0.0 0.00240963855421683 Y 0.0 N Y 282 1124 ENSG00000163684 ENSG00000168297 + - 3 3 58305816 58411748 coding coding RPP14 PXK 58291974 58318607 + + 0.0 58296318 58351601 + - N - - N SA469 1 0.0 1.0 1 0 6 Y Y 0.0 0.0 12 1.45317570470795 1.38678696692942 1.45317570470795 1.38678696692942 4 - - 0.9702636206194292 HCT116-unstranded 5.0 239898 TCGTGGGGCGGGACGAGGAGAAGCCAAACGTAAAGACACCAGGAGTTTCTCGGGCCCAGCTGTGGCTGCTGCCGGGGAGCCCCAAGCCTTGGCGGGTCCTTGCGGCGAATAGGAGTCTGGTCAGGCGTCAGGCTAGTCCGACGAAGAGTGG|ATTGCAGGCCTAAGTCTACCTCTTCCTCCCAAAAAATTGATTGGTAACATGGATCGTGAATTCATAGCTGAAAGGCAGAAAGGTCTTCAGAACTATCTCAACGTGATCACAACAAATCATATCTTGTCTAATTGTGAGCTGGTTAAGAAGTTTTTAGATCCAAACAACTATTCCGCAAACTATACTGAGATTGCCTTGCAACAGGTTTCCATGTTCTTCCGATCAGAACCAAAGTGGGAGGTGGTGGAACCTTTGAAAGACATAGGTTGGAGAATAAGGAAGAAATATTTCTTGATGAAGATTAAAA 1 2.37288168514683e-06 0.33334503066129306 0.367096158844734 Y Y 3.55504469436573 3.5361526128830896 3.5361526128830896 0 0.0 0.0 Y 0.0 N Y 282 1124 ENSG00000163684 ENSG00000168297 + - 3 3 58305816 58411748 utr5p coding RPP14 PXK 58291974 58318607 + + 0.0 58292144 58368241 + - N - - N SA469 1 0.0 1.0 1 0 6 N Y 0.0 0.0 5 0.9810780138383648 0.752405694823408 0.9810780138383648 0.752405694823408 4 - - 0.953819598192498 HCT116-unstranded 5.0 36551 CATTTCTACGCCGTGGAGAGGAGGGCATATTGCGAGGGCTGCTACGTGGCCACCCTGGAGAAATGTGCCACGTGCTCCCAGCCCATCCTGGACCGGATCCTGCGGGCTATGGGGAAGGCCTACCACCCTGGCTGCTTCACCTGCGTGGTGTGTCACCGCGGCCTCGACGGCATCCCCTTCACAGTGGATGCTACGAGCCAGATCCACTGCATTGAGGACTTTCACAG|GCCCCCTCAGACCGTGCCATGGGTGACAGTGATGACGAGTACGATCGAAGGCGCAGGGACAAGTTCAGAAGAGAGCGCAGCGACTACGACCGTTCCCGCGAGAGAGATGAAAGACGTCGAGGGGACGATTG 9 0.9608138729904508 0.639555595111584 0.8566662998611752 Y Y 3.59528445727371 3.3536034980430003 3.3536034980430003 0 0.0 0.0 Y 0.0 N Y 2897 17527 ENSG00000087077 ENSG00000087087 + - 7 7 100471076 100486285 coding coding TRIP6 SRRT 100464760 100472733 + + 0.0 100469343 100473194 + - N - 0.240590829702241 N SA469 1 0.0 1.0 1 0 2 N Y 0.0 0.0 12 1.40891654618893 0.936818855319341 1.40891654618893 0.936818855319341 4 - 51 0.9829225717674 HCT116-unstranded 5.0 1226 GCACTCCTTCTGGAGATCCTTTCACACCGAGCGGAAGACAGAACCAGCCACAGGTTTCATCGACGGTGACTTGATTGAGAGTTTCCTGGATATTAGCCGCCCCAAGATGCAGGAGGTGGTGGCAAACC|TACAGACATTGACGAATGTGTAACCTCCTCCTGCGAGGGCCACTGTGTGAACACAGAAGGTGGGTTTGTGTGCGAGTGTGGGCCGGGCATGCAGCTGTCTGCCGACCGCCACAGCTGCCAAGACACTGACGAATGCCTAGGGACTCCCTGTCAGCAGAGATGTAAAAACAGCATTGGCAGCTACAAGTGTTCCTGTCG 2 0.535570573203077 0.9016644652806328 0.797608057851198 Y Y 3.55231620741665 3.82911562339586 3.55231620741665 0 0.0 0.0 Y 0.0 N Y 31228 382 ENSG00000167986 ENSG00000167992 + - 11 11 61110068 61062896 coding coding DDB1 VWCE 61066923 61025762 - - 0.0 61068281 61053902 - + N - - N SA469 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 6 0.8483005382812929 1.1654911743343 1.1654911743343 0.8483005382812929 4 - - 0.9897996906307428 HCT116-unstranded 5.0 211744 TCGGAGCTGTGGCTGCCGGTGTGTGCCCAGTCTGGCTTCGGCTCCCAGGGGTCGTGGGCGGGTGGGAGCCCTCGCTGGGCCATCTCCTCGGTACAGGTCAGCTGCCGCCGGCGGAGCTCCTCATCTGTCTCCTGGTCCACCACCAGCAGCCGAGTCTGCCCCTCCACAGCCTTGATCCTTTGCACCA|CCTGGCCAGCTCCGCTGAAGTCCAGGGACTCCGGTTCCAGCGCAGGCTCTGGGGCGCGCGGGCTCCGGGGCGCACGGACGGGGATCCCTGCCTGGGAGCTCCTGCGTCGCGTCTCCCACAGCTCCTGAACCCACGAGGGCAGCAGGAGAGGAGCCTCGCGG 12 0.907194724248583 0.533401161869454 0.506921944538581 Y Y 3.37548038812845 3.56591914887046 3.37548038812845 0 0.993806616953496 0.00286532951289409 Y 0.10195945825695404 N Y 917 10774 ENSG00000065054 ENSG00000183971 - + 16 16 2089027 2070756 coding intron SLC9A3R2 NPW 2075357 2059927 + + 0.0 2079583 2070313 - + N - 0.67594568073422 N SA469 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 15 1.3203982291508798 1.07697285729625 1.3203982291508798 1.07697285729625 4 - 358.2 0.983048174173294 HCT116-unstranded 5.0 37242 TTCTTTGATTGGGGCTTTGATCCCTGAACCAGAAGTGAAAATTGAAGTTCTCCAGAAGCCATTCATCTGCCATCGCAAGACCAAAGGAGGGGATTTGATGTTGGTCCACTATGAAGGCTACTTAGAAAAGGACGGCTCCTTATTTCACTCCAC|GATGGCTGCAGCTCCTCCAAGTTACTGTTTTGTTGCCTTCCCTCCACGTGCTAAGGATGGTCTGGTGGTATTTGGGAAAAATTCAGCCCGGCCCAGAGATGAAGTGCAAGAGGTTGTGTATTTCTCGGCTGCTGATCACGAACCGGAGAGCAAGGTTGAGTGCACTTACATTTCAATC 15 0.9021846243055248 0.922954921543232 0.54858056841728 Y Y 3.57489529770476 3.58337693299909 3.57489529770476 0 0.993483738877077 0.00301204819277112 Y 0.00301204819277112 N Y 199 6549 ENSG00000106080 ENSG00000136193 + - 7 7 30066300 30029905 coding coding FKBP14 SCRN1 30050203 29959719 - - 0.0 30065928 30008684 - + N - - N SA469 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 16 1.04009022519706 1.36465738766991 1.36465738766991 1.04009022519706 4 - - 0.9881312401564132 HCT116-unstranded 5.0 326594 GCTTCCAGGGCCGCGCGGCGGTGATCAAGCACCGCTTCCCCAAGGGCTACCGGCACCCGGCGCTGGAGGCGCGGCTTGGCAGACGGCGGACGGTGCAGGAGGCCCGGGCGCTCCTCCGCTGTCGCCGCGCT|GGAAGGCCGCTGCTTGTTTGTCATCCTGCTCATGGCGGTGTACTGGTGCACGGAGGCCCTGCCGCTCTCAGTGACGGCGCTGCTGCCCATCGTCCTCTTCCCCTTCATGGGCATCTTGCCCTCCAACAAGGTCTGCCCCCAGTACTTCCTCGACACCAACTTCCTCTTCCTCAGTGGGCT 1 0.89494869945225 0.587344846592573 0.7031853669827091 Y Y 3.11013383567725 3.54400240599166 3.11013383567725 0 0.9847817576825212 0.0 Y 0.7641172440790759 N Y 666 75 ENSG00000172315 ENSG00000158296 + - 20 20 45318418 45304714 coding utr5p TP53RK SLC13A3 45313004 45186463 - - 0.0 45317771 45242364 - + N - - N SA469 1 0.0 1.0 1 0 1 N Y 0.0 0.0 7 0.8483005382812929 0.944195381739178 0.944195381739178 0.8483005382812929 4 - - 0.9636626990630258 HCT116-unstranded CGHSA0579 5.0 78554 AAAACAGGCACAGCATACACTTTCTTTACACCTAATAACATAAAGCAAGTGAGCGACCTTATCTCTGTGCTTCGTGAAGCTAATCAAGCAATTAATCCCAAGTTGCTTCAGTTGGTCGAAGACAGAGGTTCA|GGTGCCTTGGAACACTATGTTAATTGCCTGGATCTGGTAAACAAGAGGCTACCTTATGGCCTTGCTCAGATTGGAGTGTGTTTTCATCCTGTTTTTGACACTAAGCAGATACGAAATGGTGTTAAAAGTATTGGTGAGAAGACTGAAGCTTC 9 0.527225223545536 0.79296055804509 0.846497001918689 Y Y 3.6852786881538906 3.66273010308932 3.66273010308932 0 0.0 0.0 Y 0.0035087719298245697 N Y 28563 1140 ENSG00000108654 ENSG00000256525 + - 17 17 62504317 62493154 coding coding DDX5 POLG2 62495734 62473902 - - 0.0 62496667 62489138 - + N - - N SA469 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 6 0.811417906182106 0.627004745686173 0.811417906182106 0.627004745686173 4 - - 0.965041450650733 HCT116-unstranded 5.0 2527 AGATGCCTTTAAATCTACAAGACAGCAGCCTTCCCGAAATGTCACTACTAAGAATTATTCAGAGGTGATTGAGGTAGATGAATCAGATGTGGAAGAAGACATTTTTCCTACCACTTCAAAGACAGATCAAAGGTGGTCCAGCACATCATCCAGCAAAATCATGTCCCAGAGTCAAGTATCGAAAGGGGTTGATTTTGAATCAAGTGAG|GTCATCATGCACCCCTTGAAACCCCGGATCTCAATCACAAAGGGTGTCATCTACATCGCTGTCATCTGGACCATGGCTACGTTCTTTTCACTCCCACATGCTATCTGCCAGAAATTATTTACCTTCAAATACAGTGAGGACATTGTGCGCTCCCTCTGCCTGCCAGACTTCCCTGAGCCAGCTGACCTCTTCTGGAAGTACCTGGACTTGGCCACCTTCA 16 0.918231673536756 0.854983697513543 0.129775841291857 N Y 3.2829653569618795 3.3755202409218 3.2829653569618795 0 0.0 0.0 Y 0.0 N Y 507 800 ENSG00000020922 ENSG00000123901 + - 11 11 94227074 94134585 coding coding MRE11A GPR83 94152895 94110477 - - 0.0 94163077 94126784 - + N - - N SA469 2 0.0 1.12 1 3 2 Y N 0.0 0.0 25 1.5490705481658402 1.5121879160666498 1.5490705481658402 1.5121879160666498 4 - - 0.973893727987038 HCT116-unstranded 5.0 130152 GCGTCGCCGAGTCGGAGCCGGAGCCTGAGCCGCGCGCTGTGTCTCCGCTGCGTCCGCCGAGGCCCCCGAGTGTCAGGGACAAAAGCCTCCGCCTGCTCCCGCAGACGGGGCTCATCTGCCGCCGCCGCCGCGCTGAGGAGAGTTCGCCGCCGTCGCCGCCCGTGAGGATCTGAGAGCCATGTCGGCCAGCAGCCTCTTGGAGCAGAGACCAAAAGGTCAAGGAAACAAAGTACAAAATGGATCTGTACATCAAAAGGATGGATTAAACGATGATGATTTTGAACCTTACTTGAGTCCACAGGCAAGGCCC|GTACACTAAGATGAAGACGGCCACCAACATCTACATCTTCAACCTGGCCTTAGCCGATGCGCTGGCCACCAGCACGCTGCCTTTCCAGAGTGCCAAGTACCTGATGGAGACGTGGCCCTTCGGCGAGCTGCTCTGCAAGGCTGTGCTCTCCATCGACTACTACAATATGTTCACCAGCATCTTCACGCTCA 75 5.1245004193673e-05 0.742311242075035 0.533145407311177 Y Y 3.65488030998075 3.75594733445854 3.65488030998075 0 0.0 0.0 Y 0.0 N Y 9289 1408 ENSG00000198492 ENSG00000116329 + - 1 1 29096287 29190208 coding coding YTHDF2 OPRD1 29063133 29138654 + + 0.0 29064850 29185466 + - N - 0.012161278388682 N SA469 1 0.0 1.0 1 0 1 N Y 0.0 0.0 18 1.60808275952454 1.44579917828812 1.60808275952454 1.44579917828812 4 - 0.166666666666667 0.934753526371944 HCT116-unstranded 5.0 129900 CAAAAGCCTCCGCCTGCTCCCGCAGACGGGGCTCATCTGCCGCCGCCGCCGCGCTGAGGAGAGTTCGCCGCCGTCGCCGCCCGTGAGGATCTGAGAGCCATGTCGGCCAGCAGCCTCTTGGAGCAGAGACCAAAAGGTCAAGGAAACAAAGTACAAAATGGATCTGTACATCAAAAGGATGGATTAAACGATGATGATTTTGAACCTTACTTGAGTCCACAGGCAAGGCCC|GTACACTAAGATGAAGACGGCCACCAACATCTACATCTTCAACCTGGCCTTAGCCGATGCGCTGGCCACCAGCACGCTGCCTTTCCAGAGTGCCAAGTACCTGATGGAGACGTGGCCCTTCGGCGAGCTGCTCTGCAAGGCTGTGCTCTCCATCGACTACTACAATATGTTCACCAGCATCTTCACGCTCACCATGATGAGTGTTGACCGCTACATC 79 1.0 0.734177625325383 0.568355172421622 Y Y 3.65488030998075 3.75594733445854 3.65488030998075 0 0.0 0.0 Y 0.0 N Y 9289 1408 ENSG00000198492 ENSG00000116329 + - 1 1 29096287 29190208 coding coding YTHDF2 OPRD1 29063133 29138654 + + 0.0 29064850 29185466 + - N - - N SA469 1 0.0 1.0 1 0 1 N Y 0.0 0.0 58 1.7187306558221 1.63021233878405 1.7187306558221 1.63021233878405 4 - - 0.9805975981117968 HCT116-unstranded 5.0 393159 GTGTGATTCCGTCCTGCGCGGTTGTTCTCTGGAGCAGCGTTCTTTTATCTCCGTCCGCCTTCTCTCCTACCTAAGTGCGTGCCGCCACCCGATGGAAGATTCGATGGACATGGACATGAGCCCCCTGAGGCCCCAGAACTATCTTTTCG|CCCAGCTCCTAGTGGAGACAGACACCTTCGGTAGTCAAGTCCGGATCAAGGGCAAGGAGACGGAATTCTACCTGTGCATGAACCGCAAAGGCAAGCTCGTGGGGAAGCCCGATGGCACCAGCAAGGAGTGTGTGTTCATCGAGAAGGTTCTGGAGAACAACTACACGGCCCTGATGTCGGC 3 0.9980636332199972 0.612024191089448 0.4315258561415061 Y Y 3.53768019619294 3.62977107183644 3.53768019619294 1 0.0 0.0 Y 0.0 N Y 81126 2898 ENSG00000181163 ENSG00000156427 + - 5 5 170838141 170884627 coding coding NPM1 FGF18 170814120 170846660 + + 0.0 170815010 170876151 + - N - - N SA469 13 0.0 2.5 1 1 6 Y Y 0.0 0.0 8 0.826170959021781 1.1802442271739702 1.1802442271739702 0.826170959021781 4 - - 0.924618621230294 HCT116-unstranded 5.0 393157 TTCCCTGGTGTGATTCCGTCCTGCGCGGTTGTTCTCTGGAGCAGCGTTCTTTTATCTCCGTCCGCCTTCTCTCCTACCTAAGTGCGTGCCGCCACCCGATGGAAGATTCGATGGACATGGACATGAGCCCCCTGAGGCCCCAGAACTATCTTTTCGGT|GCTGGTTGCCGAGGAGAACGTGGACTTCCGCATCCACGTGGAGAACCAGACGCGGGCTCGGGACGATGTGAGCCGTAAGCAGCTGCGGCTGTACCAGCTCTACAGCCGGACCAGTGGGAAACACATCCA 9 1.0 0.443193842045661 0.50438323500752 Y Y 3.608318337274061 3.80400638525155 3.608318337274061 4 0.0 0.0 Y 0.0 N Y 81126 2898 ENSG00000181163 ENSG00000156427 + - 5 5 170838141 170884627 coding coding NPM1 FGF18 170814120 170846660 + + 0.0 170815010 170863097 + - N - - N SA469 11 0.0 1.8421052631578896 1 4 6 N Y 0.0 0.0 19 0.9589484345788531 1.17286770075414 1.17286770075414 0.9589484345788531 4 - - 0.911248441734348 HCT116-unstranded 5.0 392919 TCAAGAAACAGGAAAAAACTCCTAAAACACCAAAAGGACCTAGTTCTGTAGAAGACATTAAAGCAAAAATGCAAGCAAGTATAGAAAAAGGTGGTTCTCTTCCCAAAGTGGAAGCCAAATTCATCAATTATGTGAAGAATTGCTTCCGGATGACTGACCAAGAG|GTGCTGGTTGCCGAGGAGAACGTGGACTTCCGCATCCACGTGGAGAACCAGACGCGGGCTCGGGACGATGTGAGCCGTAAGCAGCTGCGGCTGTACCAGCTCTACAGCCGGACCAGTGGGAAACACATCCAGGTCCTGGGCCGCAGGATCAGTGCCCGCGGCGAGGATGGGGACAAGTATGCCCAGCTCCTA 65 0.8164946360330759 0.971999313224857 0.38587588731448097 Y Y 3.7308075910906897 3.80400638525155 3.7308075910906897 1 0.0 0.0 Y 0.0 N Y 81126 2898 ENSG00000181163 ENSG00000156427 + - 5 5 170838141 170884627 coding coding NPM1 FGF18 170814120 170846660 + + 0.0 170834778 170863097 + - N - - N SA469 25 0.0 15.0 3 77 6 Y Y 0.0 0.0 77 1.21712685927316 1.45317570470795 1.45317570470795 1.21712685927316 4 - - 0.905853793167214 HCT116-unstranded 5.0 381854 GCGGTGACCGTTGGCGCCGAGGGGAGGAGGCAGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGTTGCGCAGATCCGGGCCGCGGCTGTGGGGAGGGCGACGGAGCGGGTGACCTTCCGGAGGCGGGAGCGAGCGAGGAGGCCCGGGAGCGCCGAGCGTCGCCGCCGCCGCCGCCATGAACAACTCGGGCGCCGACGAGATCGG|TGGGACCTGAACCGCCAAACCGCACCTACGAGCAAACGGTAGGCGCTCCATAAATACTTGTTGATGTGGGTGCCATCGTGTAGATGACGGAGCACGAACCCGAGGCTCAGACAGGGGCGGCGACTTGTCCAAAGTCCCACTCCGTGGAGGAAGCGGCTCTGCAGACCTCAGGCGGCGGCT 29 1.0 0.7392002014182751 0.3432995099623889 Y Y 3.35566963758278 3.3368080613236804 3.3368080613236804 0 0.99445847362514 0.0 Y 0.0 N N 8252 59834 ENSG00000071626 ENSG00000115268 + - 19 19 1435719 1441066 coding upstream DAZAP1 RPS15 1407584 1438358 + + 0.0 1407801 1438072 + - N 1.81431513731119 - N SA469 15 0.53072625698324 1.46666666666667 1 1 2 N Y 0.2018779342723 0.53072625698324 30 1.57120012742535 1.3203982291508798 1.57120012742535 1.3203982291508798 4 30.9 - 0.918873608121802 HCT116-unstranded 5.0 131371 CCCATGAAGCTGAGGTCTTGAAGCAGCTGGCTGAGAAACGAGAGCACGAGAAAGAAGTGCTTCAGAAGGCAATAGAAGAGAACAACAACTTCAGTAAAATGGCAGAAGAGAAACTGACCCACAAAATGGAAGCTAATAAAGAGAACCGAGAGGCACAAATGGCTGCCAAACTGGAACGTTTGCGAGAGAA|GCTCCCTGCCCAGGCCCACAGCCATGGCCATGGCCCAGAAACTCAGCCACCTCCTGCCGAGTCTGCGGCAGGTCATCCAGGAGCCTCAGCTATCTCTGCAGCCAGAGCCTGTCTTCACGGTGGATCGAGCTGAGGTGCCGCCGCTCTTCTGGAAGCCGTACATCTATGCGGGCTACCGGCCGCTGCATCAGACCTGGCGCTTCT 68 1.0 0.9151388084882072 0.4023282873363849 N Y 3.46807512488172 3.08192538822327 3.08192538822327 1 0.99475016655563 0.0 Y 0.0 N Y 25202 2314 ENSG00000117632 ENSG00000182749 + - 1 1 26233482 26197744 coding utr5p STMN1 PAQR7 26210672 26187701 - - 0.0 26227982 26190352 - + N - - N SA469 1 0.0193236714975845 1.0 1 0 1 N N 0.0 0.0193236714975845 74 1.4753052839674698 1.5269409689063302 1.5269409689063302 1.4753052839674698 4 - - 0.968313874012871 HCT116-unstranded 5.0 130692 ATAGAAGAGAACAACAACTTCAGTAAAATGGCAGAAGAGAAACTGACCCACAAAATGGAAGCTAATAAAGAGAACCGAGAGGCACAAATGGCTGCCAAACTGGAACGTTTGCGAGAGAA|GCTCCCTGCCCAGGCCCACAGCCATGGCCATGGCCCAGAAACTCAGCCACCTCCTGCCGAGTCTGCGGCAGGTCATCCAGGA 68 7.07130984457248e-05 0.9151388084882072 0.4023282873363849 N Y 3.46807512488172 3.08192538822327 3.08192538822327 0 0.987865249939628 0.00495049504950495 Y 0.00495049504950495 N Y 25202 2314 ENSG00000117632 ENSG00000182749 + - 1 1 26233482 26197744 coding utr5p STMN1 PAQR7 26210672 26187701 - - 0.0 26227982 26190352 - + N - - N SA469 1 0.474025974025974 1.0 1 0 1 N N 0.0 0.474025974025974 7 1.09172591013592 1.13598506865495 1.13598506865495 1.09172591013592 4 - - 0.9173995347860708 HCT116-unstranded 5.0 129365 TGGACCTAGTGTCAGCCTCGGTGGTGGTGGTGGGTGTGATCGCCGCACTCTTGTTCTGCCTTCTGGTGGTGGTGGTGGTGCTCATGTCCCGATACCATCGGCGCAAGGCCCAGCAGATGACCCAGAAATATGAGGAGGAGCTGACCCTGACCAGGGAGAACTCCATCCGGAGGCTGCATTCCCATCACACGGACCCCAGGAGCCAG|GAGGCTGTAGGAGTGCAATTGGAACCTGAGCGCTTGGTCAAGATCCTAGAGGTGCTTCGGGAACTCCCTGTCCCAAACTACAGGACCCTGGAGTTCCTCATGAGGCACTTGGTACACATGGCCTCATTCAGTGCCCAGACCAACATGCATGCTCGCAACC 9 0.8273019855389548 0.526730756972409 0.5740649920190971 Y Y 3.38912318237562 3.76951977068882 3.38912318237562 0 0.0 0.0 Y 0.00272479564032702 N Y 474 1346 ENSG00000143217 ENSG00000186517 + - 1 1 161059389 161039760 coding coding PVRL4 ARHGAP30 161040785 161016736 - - 0.0 161043510 161024495 - + N - - N SA469 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 11 1.33515128199056 1.12123201581527 1.33515128199056 1.12123201581527 4 - - 0.987621098503144 HCT116-unstranded 5.0 125896 CTGAGGGCAGCCCAGCCCCCAGCGTGACCTGGGACACGGAGGTCAAAGGCACAACGTCCAGCCGTTCCTTCAAGCACTCCCGCTCTGCTGCCGTCACCTCAGAGTTCCACTTGGTGCCTAGCCGCAGCATGAATGGGCAGCCACTGACTTGTGTGGTGTCCCATCCTGGCCTGCTCCAGGACCAAAGGATCACCCACATCCTCCACGTGTCCT|GAGGCTGTAGGAGTGCAATTGGAACCTGAGCGCTTGGTCAAGATCCTAGAGGTGCTTCGGGAACTCCCTGTCCCAAACTACAGGACCCTGGAGTTCCTCATGAGGCACTTGGTACACATGGCCTCATTCAGTGCCCAGACCAACATGCATGCTCGCAACCTGGCCATCGTGTGGGCTCCCAACCTGCTGAGGTCT 45 1.0 0.995143854417588 0.6419692512476421 Y Y 3.33784113109356 3.76951977068882 3.33784113109356 1 0.0 0.0 Y 0.0 N Y 474 1346 ENSG00000143217 ENSG00000186517 + - 1 1 161059389 161039760 coding coding PVRL4 ARHGAP30 161040785 161016736 - - 0.0 161047243 161024495 - + N - - N SA469 1 0.0 1.0 1 0 2 N Y 0.0 0.0 23 1.5785766538451895 1.4826818103872998 1.5785766538451895 1.4826818103872998 4 - - 0.98975341396599 HCT116-unstranded 5.0 239529 GTATCATGTAGCTGTGACTTCTCTAACCTGTCCTTGAAGTCAGGGTGCTGGGGAACGTCCATCAGCAGTCCCTCCACTATCAGTCTGTGGGACTCTGATTCTTTAGAAATGTTTAGCTGTGCAGTTTTTTCCTCATTCTCAGTCTTGGTTTTACCAC|CTCTGGAAGAGATTGGCATTTGAATGGGTAGACTGAGTAAAGATGACCTTCACCAATGCAGGTGGGCATCATCCTATCCACGGAAGGTTCAAATAGAACAAAATGGGGGAGGAAGCGTGAATTTGCTTTTTTAATCTGGGAAACCCATCCTCTCCTGCCCTCGGTTGTTGAT 9 0.8696066908868109 0.922103855709465 0.7623770530588259 Y Y 3.2693225627147204 3.472331195140661 3.2693225627147204 9 0.0 0.0 Y 0.0 N N 4201 43284 ENSG00000177873 ENSG00000188846 - + 3 3 40531727 40503861 coding downstream ZNF619 RPL14 40518604 40498783 + + 0.0 40528297 40509094 - + N - - N SA469 1 1.0 1.0 1 0 2 N Y 0.0 1.0 5 0.973701487418527 1.1286085422351102 1.1286085422351102 0.973701487418527 4 - - 0.978141734041776 HCT116-unstranded 5.0 381876 AAGATTAAATGCTGAAACATTTGGAATCCCACTTCGTCCAAACCGTGGCCGTGGGGGATACAGAGGCAGAGGAGGTCTTGGTTTCCGTGGTGGCAGAGGGCGTGGTGGTGGCAGAGGTGGTACCTTCACTGCCCCTCGAGGATTTCGCGGTGGATTCAGAGGAGGTCGTGGGGGCCGGGAGTTTGCGGATTTTGAATATAGG|GAAAGGACTTAGAAGCCTTACAAATACATCTGTGCATTCTTGCTTCAGACTTTACAACTGAGGGCCAGCCCAGTCTGGAAGCATCTCTTATTAATGTTACAAGGAAACCGCTACCTCAGCAAACAAAAGGAATGGAGGAGGAGACTTACAACA 9 0.8472123757021519 0.7148194992655991 0.5131449872393661 Y Y 3.2540945620986004 3.6800200533486 3.2540945620986004 4 0.0 0.0 Y 0.0 N Y 3580 759 ENSG00000257103 ENSG00000166398 + - 19 19 34720420 34846491 coding utr5p LSM14A KIAA0355 34663409 34745457 + + 0.0 34712643 34790584 + - N - - N SA469 2 0.0 1.14285714285714 1 1 1 N Y 0.0 0.0 7 1.33515128199056 1.11385548939544 1.33515128199056 1.11385548939544 4 - - 0.911565202481092 HCT116-unstranded 5.0 77206 GAGAGAACTTGTTAAAAAGGGTTTCAATCCACCTGTTCTTGTTTTTGTTCAGTCCATTGAAAGGGCTAAAGAACTTTTTCATGAGCTCATATATGAAGGTATTAATGTGGATGTTATTCATGCAGAGAGAACACAACAACA|GCTTCATGTTTCCTGTTGCAGGTGGGATAAGACCCCCTCAAGGCCTGATGCCGATGCAGCAACAAGGATTTCCTATGGTCTCTGTCATGCAGCCTAATATGCAAGGCATTATGGGAATGAATTACAGCTCTCAGATGTCCCAAGGACCTATTGCTATGCAGGCAGGAATACCAATGGGACCAATGC 6 1.0 0.898144427630277 0.19953059377699 Y Y 3.5156701673583 3.55025006787687 3.5156701673583 0 0.992929423975091 0.0 Y 0.0 N Y 822 1270 ENSG00000141141 ENSG00000006114 + - 17 17 36003493 35969544 coding coding DDX52 SYNRG 35969787 35874900 - - 0.0 35981443 35960450 - + N - - N SA469 1 0.0 1.0 1 0 1 N Y 0.0 0.0 12 0.988454540258202 1.1654911743343 1.1654911743343 0.988454540258202 4 - - 0.972909719109177 HCT116-unstranded 5.0 225851 TACGGGGTTTACAGCTGTGAGGGTTGCAAGGGCTTCTTCAAACGCACCATCCGCAAAGACCTTACATACTCTTGCCGGGACAACAAAGACTGCACAGTGGACAAGCGCCAGCGGAACCGCTGTCAGTACTGCCGCTATCAGAAGTGCCTGGCCACTGGCATGAAGAGGGAG|GGTGCACCCCCTGTGGATGTGCTCCGGGCCCTGAGGTTCCCCTCCCTCCCTGATGGTGTCCGGAGAGCGAAAGGCATCTGTCCAGCTGATGTGGCCTACCGAGTGGCACGACCTGCCCAGCTCAGTGCACCCACTCGCCAGCTTTTCCCAGGAGGATTTCCCAAAGATTTCTCT 4 0.83129323216261 0.802296632862351 0.483864011041604 Y Y 3.64656650855576 3.29127915838687 3.29127915838687 2 0.0 0.0 Y 0.0 N Y 524 1087 ENSG00000204231 ENSG00000204248 + - 6 6 33168630 33160276 coding coding RXRB COL11A2 33161365 33130458 - - 0.0 33165539 33157246 - + N - - N SA469 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 10 1.21712685927316 0.973701487418527 1.21712685927316 0.973701487418527 4 - - 0.9823458888396328 HCT116-unstranded 5.0 225757 GCAGAGAGAAATCTTTGGGAAATCCTCCTGGGAAAAGCTGGCGAGTGGGTGCACTGAGCTGGGCAGGTCGTGCCACTCGGTAGGCCACATCAGCTGGACAGATGCCTTTCGCTCTCCGGACACCATCAGGGAGGGAGGGGAACCTCAGGGCCCGGAGCACATCCACAGGGGGTGCACC|CCGCCCGCTGTCGCCCATCCCGTCCCGTCCAGCCTCCCCTGGCTCCGGCTCCGGGGTTTGTTGTTCTCCGCCTGCCACCGCCGCCGCCGCCGCCGCTGCGGGATCCAGCCAGGGCCGTCGCCGCCGCCACCGGGACGCGACCCCACAATGCATTTCTTTTCGCACCCCCACCGGCCCACACTGCCCTGCGGCATGCCGCTG 8 0.497812187837064 0.9638521722520792 0.8814414776474759 Y Y 3.29127915838687 2.78064857628551 2.78064857628551 1 0.0 0.0 Y 0.0 N Y 1087 524 ENSG00000204248 ENSG00000204231 - + 6 6 33160276 33168630 coding coding COL11A2 RXRB 33130458 33161365 - - 0.0 33157246 33168019 + - N - 0.821580062782546 N SA469 1 0.154589371980676 1.0 1 0 1 Y Y 0.0 0.154589371980676 10 1.35728086125007 1.43842265186828 1.43842265186828 1.35728086125007 4 - 3.6 0.907569437868463 HCT116-unstranded 5.0 211732 GGTATTTGAGTACAGCATCCCAGACAAACAGTATACAGATTGGAGCCGGACTGTCCAGAAGCAGGGCTTTCACCACCTTTGGCTCCAAAGGGATACTCCTATCACACACATCAGTTTTCATCCCAAGAGACCGATGCACATCCTTCTCCATGATGCCTACATGTTCTGCATCATTGACAAGTCATT|GTCAAGTTCATCCGAGAAGTAACACCATATATCAAGAAGCCATCATTAGTATCAGATCTGCCGTGGGAAGGTGCAGCCCCCCAGTCACCAAGCTTTAGTGGCAGTGAGGACTCTGGTTCGCCAAAACACCAGAACAGCACCAAGGACAGGAAGATCATCCCTCTCAAAATGTGCTTTGCTGCTAGAAACCTAAGCATGCCGG 39 1.0 0.362609971275454 0.479413208775976 Y Y 3.55760534744548 3.51377186168787 3.51377186168787 1 0.994637476849932 0.0 Y 0.0 N Y 5502 4322 ENSG00000141076 ENSG00000168807 + - 16 16 69202941 69342955 coding intron CIRH1A SNTB2 69165194 69221032 + + 0.0 69199429 69279505 + - N 8.69204482457882 0.303985336724676 N SA469 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 32 1.37203391408974 1.5343174953261598 1.5343174953261598 1.37203391408974 4 18.9375 2.9375 0.987621098503144 HCT116-unstranded 5.0 78702 CTGGGCTGGAATGACGTAGTCGGCGACATCCCAGATCCGCTGCCCAAGATCCGAGGTGTTGGTGAAGGCCACGCCCTTGACTTTGGTGATGACAGCACTCTGCAGGGAGGTGTCGACGTCTTGGTAACCCTTCTTTATCAGGAACACCCAT|CTTTGCCCAGGTGGATCTCTCCTCTGTTCTTCATGGCTTCGAGGGTCAGCTTACAGGTGTCTCTCTCCTTCATGAAGGCCTCCTCAATTGCTGTCCTCCTCCAAATGTCCACACGATAGGATCTGTACCATTTAGAGAATTCATTGCTTTCTCCCT 13 0.596668573030298 0.7254544786628491 0.7010062058787049 Y Y 3.62192127872787 3.21800065863931 3.21800065863931 0 0.0 0.0 Y 0.0164487830050744 N N 825 1354 ENSG00000083454 ENSG00000083457 - + 17 17 3599698 3704537 coding downstream P2RX5 ITGAE 3575493 3617922 - - 0.0 3595088 3608720 + - N - - N SA469 1 0.0 1.0 1 0 2 N Y 0.0 0.0 11 1.12123201581527 1.13598506865495 1.13598506865495 1.12123201581527 4 - - 0.9855187992232192 HCT116-unstranded 5.0 131612 AGGAGCAACAAAGAGATGATGCGGAAGAGTCTTCCTCGGAGCCTGAGGAGGAAAATGTGGGAAACGACACCAAAGCCGTTATTAAAGCACTGGATGAGAAGATTGCCAAATATCAGAAGTTTCTAGACAAAGCCAAAGCCAAAAAGTTTTCAGCAGTCAG|CCAAAATCACAGAATGAAGGCGGTGAAGAGCGAACGGGAGCGAGGGAGCCGGCGAAGACACCGGGACGGGGACGTGGTGCTGCCGGCGGGGGTGGTGGTGAAGCAGGAGCGTCTCAGCCCAGAAGTCGCACCTCCCGCCCACCGCCGTCCGGACCACTCCGGTGGTAGCCCGTC 16 0.8937182244085591 0.8303338957400942 0.886660219250128 N Y 3.03276290964348 3.35041100277749 3.03276290964348 0 0.0 0.0 Y 0.0 N N 3608 2704 ENSG00000134697 ENSG00000163877 + - 1 1 38061536 38019903 coding utr5p GNL2 SNIP1 38032417 38002142 - - 0.0 38034452 38019843 - + N - - N SA469 1 0.0 1.0 1 0 1 Y N 0.0 0.0 7 1.0474667516169 1.05484327803674 1.05484327803674 1.0474667516169 4 - - 0.934572511476556 HCT116-unstranded 5.0 78032 GTCTTCCATTGGGTCTCCTGTTGGTACCCCAAAAGGTCCCCAGGGAGCTCTGCAGACACCCATAGTCACCAACCACCTGGTGCAGCTAGTCACTGCTGCCAGCCGGACACCCCAGCAGCCCACCCATCCCTCCACCCGAGCCAAAACTCGCCGTTTCCCTGGCCCAGCTGGGATCCTGCCTCAC|CAGCAGGAGTGGCTGGAATGGGAGGACCGGCGGCGGGCGGCTGCCCAGCAGTGCCGGAGCCGCAGGTGCCCGTCAAGTCCCCGGGCCCGACTCACTAGGCCTCACCGTTCCTGCCGAGACCCAGCTGTCCACCAAGCCCTCTTCTCCGGCAACCTGCAGCAGGTCCAAGCCCTGTTCCAAGATGAAGA 9 1.0 0.603213558483115 0.6737714391964871 Y Y 3.4106386976703 3.19656484893134 3.19656484893134 0 0.0 0.0 Y 0.0 N Y 672 467 ENSG00000125319 ENSG00000161664 + - 17 17 42239844 42256451 coding coding C17orf53 ASB16 42219274 42247815 + + 0.0 42226395 42248215 + - N - 0.0401134183971312 N SA469 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 10 1.3794104405095802 1.20975033285332 1.3794104405095802 1.20975033285332 4 - 0.3 0.9726835828568609 HCT116-unstranded 5.0 2653 CAAGGGGCGGGCAGAAGTTGGAAACATGCGGCTGTCGGTCGCTGCAGCGATCTCCCATGGCCGCGTATTTCGCCGTATGGGCCTCGGTCCCGAGTCCCGCATCCATCTGTTGCGGAACTTGCTCACAGGGCTGGTGCGGCACGAACGCATCGAGGCACCATGGGCGCGTGTGGACGAAATGAGGGGCTACGCGGAGAA|GGTCAGGGAGCCTGAGCTGGAGCCAGGGCCCCAGTGGGACCTGACCCAAAGTCTGAGGTCAAGCTGGGCCCAGAGCCTGGCCTGGAGCTGGAGCCCAAGGCACAGCTGGACTACCCTTGTCATGCAGAAGGAGCTGGGCATTGTGCCTTCCTGCCCTGGCATGAAGAGCCCCAGGCCCCACCTCC 49 0.669831502514692 0.904378860594098 0.233435806972258 Y Y 3.31911688348027 3.08615095325867 3.08615095325867 2 0.0 0.0 Y 0.018778153153153 N Y 2968 5494 ENSG00000158042 ENSG00000166341 + - 11 11 6704632 6677085 coding utr5p MRPL17 DCHS1 6702013 6642556 - - 0.0 6704354 6662964 - + N - - N SA469 1 0.00526315789473684 1.0 1 0 1 Y Y 0.0 0.00526315789473684 28 1.46055223112779 1.4015400197690902 1.46055223112779 1.4015400197690902 4 - - 0.907435938603136 HCT116-unstranded 5.0 131397 AAGATGCTAAGAGAAATCTGAGTGAGGCAGAGACATGGAGACATGGTGAAAATACGTCTTCCCGGGAAATATTAATCAACCTTATTCAGGCCTATAAAGGGCTTTTACAGTATTATACCTGGTCTGAAAAGAAGATGGAATTGTCAAAGCTT|GGAGTGCTCGCCCTACGCAGCCCACCTCTACGACGCCGAAAACACCCAGACGCCTCTCCGGAATCTCCCGGGCCTCTGCTCTGATTACTGCTCTGCCTTCCATTCTAACTGTCACTCAGCCATTTCCCTGCTGACCAATGACCGCGGCCTCCA 27 1.0 0.7999031927141899 0.9360386887398392 Y Y 3.61360747730288 3.47655676017605 3.47655676017605 4 0.0 0.0 Y 0.0 N Y 394 260 ENSG00000143498 ENSG00000143512 + - 1 1 222763275 222721445 coding coding TAF1A HHIPL2 222731244 222695602 - - 0.0 222750787 222717531 - + N - - N SA469 1 0.0 1.0 1 0 1 N Y 0.0 0.0 11 1.11385548939544 1.1507381214946202 1.1507381214946202 1.11385548939544 4 - - 0.941858956898033 HCT116-unstranded 5.0 317267 ACTGAAACAACTTGAAGAAGAAAAAAGGAGACAGAAGATTGAAATGTGGGACAGCATGCAAGAAGGAAAAAGTTACAAAGGAAATGCAAAGAAGCCCCAGGAGGAAGACAGTCCTGGGCCTTCCACTTCATCTGTCCTGAAACGGAAATCGGACAGAAAGCCTTTGCGGGGAGG|AGAACATGGTCCAAGACAATTCCTGGGAAAGTTCAGTTCTTCTCAAGTGAGGGTTCTGACACATCTGTACCAATTCCAGTAGTGCCACTACGGGGTGTGGACGACTCCTACCCGCCCCAGAAGAAGTCCTTCATGATGCTCAAGTACATGC 59 1.0 0.711865700293844 0.4420492463208161 Y Y 3.33896748681929 3.5203902459336605 3.33896748681929 0 0.0 0.0 Y 0.0 N Y 2273 4290 ENSG00000131871 ENSG00000131873 + - 15 15 101817705 101792137 coding coding VIMP CHSY1 101811022 101715928 - - 0.0 101814625 101775782 - + N - - N SA469 1 0.0 1.0 1 0 1 N Y 0.0 0.0 10 0.944195381739178 0.8040413797622691 0.944195381739178 0.8040413797622691 4 - - 0.9830211874332478 HCT116-unstranded 5.0 317434 GATGTACACGTCATCATCTGCTCTCATAAACCATTCATACTTGTCCAAGTAGTGGTCGTGCATGTACTTGAGCATCATGAAGGACTTCTTCTGGGGCGGGTAGGAGTCGTCCACACCCCGTAGTGGCACTACTGGAATTGGTACAGATGTGTCAGAACCCTCACTTGAGAAGAACTGAACTTTCCCAGGAATTGTCTTGGACCATGTTCT|CCTCCCCGCAAAGGCTTTCTGTCCGATTTCCGTTTCAGGACAGATGAAGTGGAAGGCCCAGGACTGTCTTCCTCCTGTTTGAACACACACAGTAGTGTAAGAAGCAATTAAAACATTCTACTTGGCAATCTTCATCTACCGCATGCCAGCCGGCCGAGGTCTCCAGTCACCTGGGGCTT 59 0.907196140977431 0.711865700293844 0.4420492463208161 Y Y 3.5203902459336605 3.33896748681929 3.33896748681929 0 0.0 0.0 Y 0.0 N Y 4290 2273 ENSG00000131873 ENSG00000131871 - + 15 15 101792137 101817705 coding coding CHSY1 VIMP 101715928 101811022 - - 0.0 101775782 101814625 + - N - 3.35911493216555 N SA469 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 42 1.5490705481658402 1.3203982291508798 1.5490705481658402 1.3203982291508798 4 - 11.1904761904762 0.9805975981117968 HCT116-unstranded 5.0 58864 GGATGAATACAGTGAATATCTTAAGCACAATGTTAGAGGTGTTGTATCTATGGCTAATAATGGCCCGAACACCAATGGATCTCAGTTCTTCATCACCTATGGCAAACAGCCACATTTGGACATGAAATACACCGTATTTGGAAA|AGTTCAAAAACTATCAGTGAGTGGGGACAACACGCCGACGGCTTCCTTTCATCCGCCACAGCGGGCTCTGGTTCCCTCCCTGGCGCCTGCGCCCACGATGGTCGCGCGCGCGACACGCCCGCCCTTTCCGCCTGCTCGCCCCGTGCATGACCCGCCCC 4 0.324679801526037 0.280787644675933 0.271975878636238 Y Y 3.37192651807217 3.61257440753299 3.37192651807217 1 0.0 0.0 Y 0.0 N N 978 1287 ENSG00000240344 ENSG00000013441 + - 2 2 201754026 201729422 coding upstream PPIL3 CLK1 201735630 201717732 - - 0.0 201741642 201729609 - + N - - N SA469 1 0.0 1.0 1 0 2 N Y 0.0 0.0 8 1.00320759309788 1.09910243655576 1.09910243655576 1.00320759309788 4 - - 0.95294392910008 HCT116-unstranded 5.0 276196 GTTGACTTCTCCTCAGACCACCTGGGCTGTTTCACCAAGTGCCGGAAGCCATGCAGGAATGGGTCTTCCAGATGCTATCGCGACAGAACAATTACACCGTCAACAACAAGAGAAATGGAGTGGCCAAAGTCAACATCTTCTTCAAGGAGCTGAACTACAAAACCAATTCTGAGTCTCCCTCTGTCAC|GGTGCTCCTGGAGCTGTTGGTGGGAATATACCCCTCAGGGGTTATTGGACTGGTCCCTCACCTAGGGGACAGGGAGAAGAGAGATAGTGTGTGTCCCCAAGGAAAATATATCCACCCTCAAAATAATTCGATTTGCTGTACCAAG 3 0.98904344426314 0.5165142400008921 0.35583271036048203 N Y 3.45976132345673 3.52680574168821 3.45976132345673 0 0.9931241586414 0.0 Y 0.0 N Y 4226 4869 ENSG00000111319 ENSG00000067182 + - 12 12 6486896 6451280 coding coding SCNN1A TNFRSF1A 6456009 6437923 - - 0.0 6457893 6443410 - + N - - N SA469 1 0.0 1.0 1 0 1 Y N 0.0 0.0 5 1.12123201581527 0.922065802479666 1.12123201581527 0.922065802479666 4 - - 0.9829636535731752 HCT116-unstranded CGHSA0430 5.0 130857 GTTGCTAAGCCAGTCAGTGGCCCTGCCTCCGTGCACTGAACCCAACTTCCAGGGACTGACTCACTGAGAGTGGGCTTTGACAAACAGCTCTCACAGGACCTGGCTGTCAACCTCCTTGTTGCCCCCACTGTTGCCTTGAGAATTGAAGACAT|GCCTTCCTGATGCGCTTGCCTGCTCCCTGGTCTCTCTGCATGGGGAAGGAGTGTTCCCAGCTTGCAAACTCCAGCTTTGCCTGTGAGAGGAACAAGCGTCCCTGATCCAGAAGGTGGTGAGTCCTCCTCTCTCTCTTCATGCTTTTTAGTCCTTTAACTTTCTCAGGATCCTCAGGTTTAGTAGAGAAATAATCCCCTTTCTCCT 18 0.942571080605195 0.7983497170548008 0.278132973568658 Y Y 3.4278353619737403 3.06889150822292 3.06889150822292 0 0.0 0.0 Y 0.0 N Y 435 1240 ENSG00000164008 ENSG00000164010 + - 1 1 43264127 43310660 utr5p utr5p C1orf50 ERMAP 43232940 43282795 + + 0.0 43241150 43291294 + - N - 0.0473655330562269 N SA469 1 0.0 1.0 1 0 1 N Y 0.0 0.0 12 1.09172591013592 1.35728086125007 1.35728086125007 1.09172591013592 4 - 0.0833333333333333 0.9482213845040932 HCT116-unstranded 5.0 58066 CACACCAATGCCAGTGCTCGAGACAACACCATCAACCTGATCCACACGTTCCGGGACTACCTGCACTACCACATCAAGTGCTCTAAGGCCTATATTCACACACGTATGCGGGCGAAAACGTCTGACTTCCTCAAGGTGCTGAACCGCGCACGCCCAGATGCCGAGAAAAAAGAAATGAAAACAATCACG|CATGCCGGCTGCCGCTCCAGGACTCCCCTGTCCCCAGGACCAAGATGACGCCCAACAGCACTGGCGAGGTGCCCAGCCCCATTCCCAAGGGGGCTTTGGGGCTCTCCCTGGCCCTGGCAAGCCTCATCATCACCGCGAACCTGCTCCTAGCCCTGGGCATCGCCTGGGACCGCCGCCTGCGCAGCCC 17 0.9746486038736032 0.983319128199471 0.754724598047397 N Y 3.04277212824767 3.40740634961144 3.04277212824767 1 0.0 0.0 Y 0.0 N Y 10224 788 ENSG00000163466 ENSG00000179921 + - 2 2 219119079 219128582 coding utr5p ARPC2 GPBAR1 219081817 219124219 + + 0.0 219114644 219127403 + - N - - N SA469 1 0.0 1.0 1 0 1 N N 0.0 0.0 13 1.34990433483023 1.4236695990286 1.4236695990286 1.34990433483023 4 - - 0.968313874012871 HCT116-unstranded 5.0 210035 CGGCCGTGGGTCCCTGCCGGCCGGCGGCGGGCGCAGACAGCGGCGGGCGCAGGACGTGCACTATGGCTCGGGGCTCGCTGCGCCGGTTGCTGCGGCTCCTCGTGCTGGGGCTCTGGCTGGCGTTGCTGCGCTCCGTGGCCGGGGAGCAAGCGCCAG|ACAGAGGTGTTCCAGGCCTTGCAGCGGCTCCATATGACCATCTTCTCCCAGAGCGTCTCACCATGTGGGAAGTTTCTGGCGGCTGGCAACAATTACGGGCAGATTGCCATCTTCAGGTACCCTCTGCCGCTGTCCACCCATTAGCCCTGGCACTTGGCCCTCATGGGACGGATGCCCCCG 10 1.0 0.637167383763552 0.5799359025631391 Y Y 3.35823029066252 3.76951977068882 3.35823029066252 0 0.0 0.0 Y 0.0 N Y 3187 2100 ENSG00000006327 ENSG00000131652 + - 16 16 3072384 3077756 coding coding TNFRSF12A THOC6 3068446 3074028 + + 0.0 3070492 3075709 + - N - 0.84455850383004 N SA469 1 0.189393939393939 1.0 1 0 1 Y Y 0.189393939393939 0.0 40 0.973701487418527 1.35728086125007 1.35728086125007 0.973701487418527 4 - 7.15 0.9798385372880792 HCT116-unstranded 5.0 239811 ATCCATTGGTTGTTCGTTTTGTTAGAGATTTAACCTATGATCCTCCAACTCTCCTGGAATTAGCTGCACGGACCATTAAGATTCGAAATATTTCCTACACTCCCTATGATCTTCCTGGAAATCTTCTTAGATACTTGGGTTCAGCCAGCAATTGCCCAAACCCAAAGTGTGGAGGA|ACCAGAGTGAGGGTACTCGAACAGTGACTGCCATCTGGTGGTTAACCAGAATCATCACCTTGTGTAGCCTGATGGTTACTAAGATGTCCACTCTTGACTCACATGGCATGCACTCGCAGCAGGGGACCAGTTGAAGGATGTCTG 10 0.863689601291658 0.456136742049815 0.5799359025631391 N Y 3.2708899988179203 3.63399663687184 3.2708899988179203 0 0.0 0.0 Y 0.0 N Y 3375 258 ENSG00000163428 ENSG00000175697 + - 3 3 120068186 120003941 coding utr5p LRRC58 GPR156 120043356 119883492 - - 0.0 120053709 119963325 - + N - - N SA469 1 0.0 1.0 1 0 1 N N 0.0 0.0 5 0.8409240118614559 0.7819118005027571 0.8409240118614559 0.7819118005027571 4 - - 0.97556715112421 HCT116-unstranded 5.0 329402 AAGTGAAGTGAAAATCTGCCGGTGCACAGGGAAGTCTTAGTGTTCAGGCTCGATTATAGTGGGGCTGGAAACTGGTCTCACAAATCCAAAGGATCTTTTCTCTGATGCTGTGAAGGTAGTTCACATGGCTGCAGAGACCTCAGTACAGGATGCATGGCC|CTTCAGAATCCCAGAGTTGAATAGTCACATTTGTTTCTCCTTCTTCATCAGTCACCAGATTTATGGTAAAGTTTGTAGCATCTGATGAGATCTTCTTGGCCACATTCACCATTTGTAGTATTTTAGGATCTTCTATTTTCACAAAGAGGTGGCTGGAATTAGGCCGTTTATTTTCGTAGCTTGAACT 5 0.3514190673386769 0.83814416248695 0.384735385035492 Y Y 3.63080414160633 3.39487633072086 3.39487633072086 0 0.993728816631323 0.0 Y 0.0 N N 1967 255 ENSG00000133731 ENSG00000253598 - + 8 8 82598928 82608409 upstream coding IMPA1 SLC10A5 82570196 82605842 - - 0.0 82601803 82606883 + - N - 0.337218687405457 N SA469 1 0.0 1.0 1 0 3 N Y 0.0 0.0 6 1.07697285729625 0.715523062724221 1.07697285729625 0.715523062724221 4 - 1.83333333333333 0.989782751312434 HCT116-unstranded 5.0 276161 AAGATTACTGTGGAAGATGATGTTGGTGGTGTTCAAGGGAAAAGAAAAGCAGCATCTAAAGCTGCAGCACAGCAGAGGAAGATTCTTCTGGAAGGCAGTGATGGTGATAGTGCTAATGACACTGAACCAGACTTTGCACCT|GAACACCAGTGTTACTTCACTCCCCTTTGTGGACACCAAGGGGAAGAAGAATACGGTAAGCTTCCCACACATTAGCAAGAAAGTCCTGCTGAAGTCATCCCTGCTGTATCAGGTGAGTGCAGACGGACTGGACCCTGAGAAGGCAGGTGAAAGACCTGGTTTTAGTCCAAAGCCAGTTTTAGAAAGGCCCAGGATAGT 5 0.847587864622003 0.8509341308437359 0.654133390091671 Y Y 3.56335849579072 3.4210491438586 3.4210491438586 0 0.0 0.0 Y 0.0 N Y 566 596 ENSG00000111247 ENSG00000010219 + - 12 12 4669214 4723325 coding utr5p RAD51AP1 DYRK4 4647950 4671370 + + 0.0 4658002 4699496 + - N - 0.0854805901134723 N SA469 1 0.0 1.0 1 0 3 N Y 0.0 0.0 8 0.96632496099869 1.35728086125007 1.35728086125007 0.96632496099869 4 - 0.25 0.9907859920802832 HCT116-unstranded 5.0 276123 CGACTGGTAACAGGGGGCGGAGGGCTCCGAAGTCTGGTTTTGGGCGGGAATTGAAACCGCCGCTGAAGCCAACAAGAATTTGAGAACTGTAAATACCAAGCCTTGAAAGGGACCATGGTGCGGCCTGTGAG|AACACCAGTGTTACTTCACTCCCCTTTGTGGACACCAAGGGGAAGAAGAATACGGTAAGCTTCCCACACATTAGCAAGAAAGTCCTGCTGAAGTCATCCCTGCTGTATCAGGTGAGTGCAGACGGACTGGACCCTGAGAAGGCAGGTGAAAGAC 1 0.306353935426977 0.267443852517612 0.264151318533886 Y Y 3.64553343878587 3.4210491438586 3.4210491438586 0 0.0 0.0 Y 0.0 N Y 566 596 ENSG00000111247 ENSG00000010219 + - 12 12 4669214 4723325 coding coding RAD51AP1 DYRK4 4647950 4671370 + + 0.0 4648122 4699496 + - N 0.587230640924694 0.0854346988563561 N SA469 1 0.0 1.0 1 0 3 N Y 0.0 0.0 9 0.715523062724221 1.05484327803674 1.05484327803674 0.715523062724221 4 6.88888888888889 0.222222222222222 0.9627093275487792 HCT116-unstranded 5.0 381120 TCCGCCAGCTGGGCTTCGCGCCGGGCGACGTGGTGGCCATCTTCCTGGAGGGCCGGCCGGAGTTCGTGGGGCTGTGGCTGGGCCTGGCCAAGGCGGGCATGGAGGCCGCGCTGCTCAACGTGAACCTGCGGCGCGAGCCCCTGGCCTTCTGCCTGGGCACCTCGGGCGCTAAGGCCCTGAT|CAAAATACGCCCTCCTTCAGAAAATCCCTGCCACCTCGATAGGACGTCCTCTTCTTGAGCTCCCCTCTCCGGCCCTCCCTGATACAGCAAGGTTGAGCATTCGGGCACTGGCTTCCCGAACTCACTTCGACTCAGGCACAGCA 6 1.0 0.6800005956662211 0.7265315697927329 Y Y 3.36551102231762 3.38127338926705 3.36551102231762 0 0.993028509951587 0.0 Y 0.0 N N 825 1591 ENSG00000130304 ENSG00000130313 + - 19 19 17616977 17632095 coding upstream SLC27A1 PGLS 17579578 17622432 + + 0.0 17597743 17622152 + - N - - N SA469 1 0.0 1.0 1 0 2 N Y 0.0 0.0 6 1.21712685927316 0.973701487418527 1.21712685927316 0.973701487418527 4 - - 0.9907859920802832 HCT116-unstranded 5.0 380956 GCGGGGACCCAGGACTGGCCCCTGGGCGGGCGGGGAGATGCTGCGCCCCAGGCCTCGGAAGGCGGCCGCCCTGGACGTGGGCATGAGGTGCACGGTCTGGGTATGCCCCGGGCAGGGAGTTGGTGCATCCCAGGCCTCGGGAGGGGGCCTGTCCGGCGGTGACCATGACCCATGTGTTGGGGACCACAGCGGTGGCCGAAGTGAGCGGGCAT|CAAAATACGCCCTCCTTCAGAAAATCCCTGCCACCTCGATAGGACGTCCTCTTCTTGAGCTCCCCTCTCCGGCCCTCCCTGATACAGCAAGGTTGAGCATTCGGGCACTGGCTTCCCGAACTCACTTCGACTCAGGCACAGCAGGCAAAGATTCAATGGGTA 9 1.0 0.5960597535847161 0.138423603462065 Y Y 3.41848849077886 3.38127338926705 3.38127338926705 0 0.993843621399177 0.0 Y 0.0 N N 825 1591 ENSG00000130304 ENSG00000130313 + - 19 19 17616977 17632095 coding upstream SLC27A1 PGLS 17579578 17622432 + + 0.0 17598005 17622152 + - N 0.710596097433652 - N SA469 1 0.0 1.0 1 0 2 N Y 0.0 0.0 15 1.56382360100551 1.1802442271739702 1.56382360100551 1.1802442271739702 4 2.86666666666667 - 0.985387684636682 HCT116-unstranded 5.0 239907 TTCCACGCTTTATCTGCGCCTGCGCCGCGCGGGATTCGCGGTCCGAGCTGAAGAGGTTCGCGGTCCGGTTTCACTTCTCCGAACCCTGAGGCAGTGTGTGAAGCTGGGACGCCAGCCATGTTCCAGACCGCTTGGCGCCAG|CTCTTGAGGATCTTGCTTGTCCAAACCCAGAAGACAGTGCATGAAGCCAGGGGACATCCGCCATGCTCCAAACAACTTGGCCTCAGTAGCGTTTCCATTCCCCAAACCTGCTCTGATCTCCCACCTGGAGAGAGGGGAAGCACCATGGGGCCCAGATCCCTGGGACACCGAG 9 0.680075267316131 0.84092776266918 0.880063026334154 Y Y 3.54400240599166 3.57167229721571 3.54400240599166 0 0.0 0.0 Y 0.0 N Y 1280 1720 ENSG00000177842 ENSG00000172888 + - 3 3 40560227 40616176 coding utr5p ZNF620 ZNF621 40547483 40566369 + + 0.0 40547867 40567270 + - N - - N SA469 1 0.0 1.0 1 0 1 N Y 0.0 0.0 5 1.04009022519706 1.20975033285332 1.20975033285332 1.04009022519706 4 - - 0.9506316860320992 HCT116-unstranded 5.0 193080 CGTGAGGAATTGGCAGCAATGAAACAGATTCTCGTTAAGATGCATAGTAAACATTCTGAGAACAGCTTACTTCTCACTAAAACAGAACCAAAACATGTGACAGAAAATCAGAAATCAAAGACTTTGAATGTGCCTAAAGAGCATGAAGACAATATATTTACACCTAAACCAACACTCTTTAC|AAGATGTGAAATGGAGAAGTATCTGACACCTCAGCTTCCTCCAGTTCCTATAATTCCAGAGCATAAAAAGTATAGACGAGACAGTGCCTCAGTCGTAGACCAGTTCTTCACTGACACTGAAGGGTTAC 7 0.841727144507309 0.322355567259685 0.600401636044218 N Y 3.18611454994968 3.6659225983548303 3.18611454994968 0 0.0 0.0 Y 0.0 N Y 283 6581 ENSG00000083535 ENSG00000102554 + - 13 13 73590591 73651676 coding coding PIBF1 KLF5 73356197 73629114 + + 0.0 73573133 73635999 + - N - 0.69000211591851 N SA469 1 0.0 1.0 1 0 1 Y N 0.0 0.0 6 1.1507381214946202 0.8556770647011299 1.1507381214946202 0.8556770647011299 4 - 80.6666666666667 0.9625548672723492 HCT116-unstranded 5.0 2603 GCTGACGCCCATTGAGTCTGCTGTCTCTGTGTTCAAGGCAGCCAACTGGTATGAAAGGGAGATCTGGGACATGTTTGGAGTCTTCTTTGCTAACCACCCTGATCTAAGAAGGATCCTGACAGATTATGGCTTCGAGGGACATCCTTTCCGGAAAGACTTTCCTCTATCTGGCTATGTTGAG|GATGGAAAGAGCCCCTGGGAGGTGACCGAGGCCACAGCCAGCCCCTCCCTGTTCAGCACTGAAGAATGACACGCATTACAGAGCTCTGGAGCAGCCCGCAGTGGAAAGTTGGAGCTGAGGTGTGTGGCAGGCAGATGAGGGAGCAGAGAACTGCTGAACAGAGTGAGACTCAGAGGACGTGGTTGAGCA 5 0.6084437717888039 0.928383048440395 0.5886646238740679 Y Y 3.4906542151698305 3.26360926716282 3.26360926716282 0 0.0 0.0 Y 0.0 N N 5269 232 ENSG00000213619 ENSG00000196666 + - 11 11 47606114 47610746 coding upstream NDUFS3 FAM180B 47586888 47608198 + + 0.0 47604020 47608133 + - N - - N SA469 1 0.0 1.0 1 0 1 N Y 0.0 0.0 6 1.26876254421202 1.24663296495251 1.26876254421202 1.24663296495251 4 - - 0.971749318013362 HCT116-unstranded 5.0 237715 CCGGCTTGCGGGGTTGAGTGGCCCGAGCTAAGGGTGCGGAGACCTAAGGGCGGCGACTACGACGGCGTTGATATCGGTGGTAACGACGGCCTCAGCAGGCGGGGAAGATGAAAG|GGTTCCTATTACTGTAACCATGCCAGAAATGACAGAGAATGAGACGCCTACAAAAAAGCAGCACAGAAAGAAAAACCGGGAGACACACAATGCAGTGGAGAGGCATAGAAAGAAGAAAATTAATGCTGGGATAAACAGAATAGGAGAGCTGATCCCATGTTCTCCTGCCCTGAAGCAGAGCAAGAATATGATCCTGGACCAAGCCTTTAAATATATAACAGAATTGAAAAGGCAAAATGATGAACTCCTGCTTAATGGAGGAAACAATGAACAAGCTGAAGAAATAAAAAAGCTACGGA 80 0.000264578740788981 0.770794029103664 0.539065010081206 Y Y 3.55231620741665 3.73233517440054 3.55231620741665 2 0.0 0.0 Y 0.0 N Y 9903 12566 ENSG00000121579 ENSG00000176542 + - 3 3 113465147 113415493 coding utr5p NAA50 KIAA2018 113437841 113367232 - - 0.0 113464789 113393743 - + N - - N SA469 1 0.0 1.0 1 0 1 N Y 0.0 0.0 5 0.5163568493886129 0.7450291684035699 0.7450291684035699 0.5163568493886129 4 - - 0.945680857206308 HCT116-unstranded 5.0 238607 GTGGAGAAGCGGCGGCACAAGCGCGGCGGCGGGAGACACTCCCGCCCCCACCAGACTCAAGCCCTCACTCGACTCTCGCGGCCTTCGTTGCTCGCACAGCTCCCTGCCCAGGCTAGGAGGCCGGCTTGCGGGGTTGAGTGGCCCGAGCTAAGGGTGCGGAGACCTAAGGGCGGCGACTACGACGGCGTTGATATCGGTGGTAACGACGGCCTCAGCAGGCGGGGAAGATGAAAG|GGTTCCTATTACTGTAACCATGCCAGAAATGACAGAGAATGAGACGCCTACAAAAAAGCAGCACAGAAAGAAAAACCGGGAGACACACAATGCAGTGGAGAGGCATAGAAAGAAGAAAATTAATGCTGGGATAAACAGAATAGGAGAGCTGATCCCATGTTCTCCTGCCCTGAAGCAGAGCAAGAATATGATCCTGGACCAAGCCT 64 0.858043138890654 0.41397999473682 0.563384328734801 Y Y 3.55231620741665 3.73233517440054 3.55231620741665 2 0.0 0.0 Y 0.0 N Y 9903 12566 ENSG00000121579 ENSG00000176542 + - 3 3 113465147 113415493 coding utr5p NAA50 KIAA2018 113437841 113367232 - - 0.0 113464789 113393743 - + N - - N SA469 1 0.0 1.0 1 0 1 N Y 0.0 0.0 20 1.65234191804356 1.45317570470795 1.65234191804356 1.45317570470795 4 - - 0.979704868459084 HCT116-unstranded 5.0 37278 AGGCAAGATTGAAGGAGATCAAGGAAGAGCTTCTGCATTCTGAGAAGCTTAAGACATACTTTGAAGACAACCCTAGGGACCTCCAGCTGCTGCGGCATGACCTACCTTTGCACCCCGCAGTGGTGAAGCCCCACCTGGGCCATGTTCCTGACTACCTG|GGCCCAGAGTGAGCCTTACACAACCATCCACCAGCCTGGCTACTGCGCCTTCTATGACGAATGTGGGAAGAACCCAGAGCTGTCTGGAAGCCTCATGACACTCTCCAACGTGTCCTGCCTGTCCAACACGCCGGCCCGCAAGATCACAGGTGATCACCTGATCCTATTACAGAAGATCTGCCCCCGCCTCTACACCGGCCCCAACACCCAAGCCTGCTGCTCCGCCAAGCAGCTGG 34 0.734833607150327 0.87648129550537 0.519263078359555 Y Y 3.51360402781852 3.5339931873874804 3.51360402781852 0 0.0 0.0 Y 0.0 N Y 7893 1631 ENSG00000136271 ENSG00000015520 + - 7 7 44614650 44580914 coding coding DDX56 NPC1L1 44605016 44552134 - - 0.0 44607717 44579941 - + N - - N SA469 1 0.0 1.0 1 0 1 N Y 0.0 0.0 38 1.20975033285332 1.58595318026503 1.58595318026503 1.20975033285332 4 - - 0.970068443002366 HCT116-unstranded 5.0 37012 CCGGTGTAGAGGCGGGGGCAGATCTTCTGTAATAGGATCAGGTGATCACCTGTGATCTTGCGGGCCGGCGTGTTGGACAGGCAGGACACGTTGGAGAGTGTCATGAGGCTTCCAGACAGCTCTGGGTTCTTCCCACATTCGTCATAGAAGGCGCAGTAGCCAGGCTGGTGGATGGTTGTGTAAGGCTCACTCTGGG|CCTTAAGCTTCTCAGAATGCAGAAGCTCTTCCTTGATCTCCTTCAATCTTGCCTCCCGAATGGCCTGCTTAGTCACTGAGCGCATGGCATCCTGGGGGTGGACACTGAAGGTCAAGACAGTGAGGCTGCCCCAAATCCTCCCTTCACACCTGGATG 14 0.647274984231827 0.8261969985899781 0.708317435244883 Y Y 3.5465630590714 3.40268627103608 3.40268627103608 0 0.0 0.00283286118980164 Y 0.0 N Y 1631 7893 ENSG00000015520 ENSG00000136271 - + 7 7 44580914 44614650 coding intron NPC1L1 DDX56 44552134 44605016 - - 0.0 44579941 44608502 + - N - 0.770469791510489 N SA469 1 0.0 1.0 1 0 1 N Y 0.0 0.0 5 1.27613907063186 1.09172591013592 1.27613907063186 1.09172591013592 4 - 194.8 0.982826607248714 HCT116-unstranded 5.0 359558 CCGGCGCTGACGGCTGCTGCGCCCGCGGCTCCCCAGTGCCCCGAGTGCCCCGCGGGCCCCGCGAGCGGGAGTGGGACCCAGCCCCTAGGCAGAACCCAGGCGCCGCGCCCGGGACGCCCGCGGAGAGAGCCACTCCCGCCCACGTCCCATTTCGCCCCTCGCGTCCGGAGTCCCCGTGGCCAG|AACTGGTTTCAAAATAAAAGCCAGACCACCACTTAGAGAGAGACACAGAATGTTCACTGCCAGGGAACTGCATGATTCCTCTGCCAAAGGCCACCCATTTACAAGAATCCAGGAAAACCAGGTGGAATCTCCCAATGATGACCCTGAGCAGAACTTCTTGTACCCA 4 0.640417994050584 0.500250646698442 0.128652167339553 N Y 3.16316473730098 3.47552369040616 3.16316473730098 1 0.0 0.0 Y 0.0 N Y 12683 446 ENSG00000122359 ENSG00000230091 + - 10 10 81965433 81838668 utr5p intron ANXA11 RP11-369J21.5 81910645 81806616 - - 0.0 81965099 81808934 - + N - - N SA469 1 0.0 1.0 1 0 1 N N 0.0 0.0 6 0.863053591120968 1.07697285729625 1.07697285729625 0.863053591120968 4 - - 0.9094365117448442 HCT116-unstranded 5.0 128672 AGATGAGTTTTCCCCACTAAAGAATGCTGATAGTCAGAATGGGAAAGACAACCCTACTACTGCAAGGCATGCTTTGATGTCCCTTCATCATTGCTGGGTCCTCAATGCAGGGGGCCATTTCATAGATGAAAATGGCTCTCGCCTTCCAGCAATTCCCCGCTTGAAGGATGCCAATGATGTACCAATCCAATGTGAAATCTCTCCTCTTATCTCCTATGCTGGAG|AACCTCCATCAAGGGAGACCTGCAAGTTGCCTGGGGTTCAGTGCTCTAGAAAGTTCCAAGGTTTGTGGCTTGAATTATTCTAAAGAAGCTGAAATAATTGAAGAGAAGCAGAGGCCAGCTGTTTTTGAGGATCCTGCTCCACAGAGAATGC 6 0.271724335987225 0.754355377551098 0.4879853535070711 Y Y 3.36353301106048 3.6161681303826296 3.36353301106048 0 0.0 0.0 Y 0.0 N Y 2029 471 ENSG00000117143 ENSG00000162733 + - 1 1 162569627 162750237 coding utr5p UAP1 DDR2 162531321 162601163 + + 0.0 162567648 162625001 + - N - - N SA469 1 0.0 1.0 1 0 1 N Y 0.0 0.0 12 1.44579917828812 1.13598506865495 1.44579917828812 1.13598506865495 4 - - 0.947784525315731 HCT116-unstranded 5.0 78108 GAAAGAATATATCAGCCTTCGGCTCATCATATCAGAGCTGAGGAATCAATATG|GCTGAAAAACTGGGTGGTAGCTGAAGACGTGGTGTTTAAACCTGTGGCTGCCCCCTGGAACCCGGAGCACTGGCTACAGCGCCCACAGCTGACTCGGCAGGTCCTGGGAAAGGAGGACCTGACAGCTTTTTCCTTGGGAAGCCCC 19 2.30418092359281e-05 0.302755880095144 0.7883426199783531 Y Y 3.60888739872753 3.1363999347708305 3.1363999347708305 0 0.0 0.0050251256281405 Y 0.0050251256281405 N Y 9207 3597 ENSG00000131467 ENSG00000131480 + - 17 17 40995523 41002724 coding coding PSME3 AOC2 40976402 40996617 + + 0.0 40991397 41001103 + - N - - N SA469 1 0.0 1.0 1 0 6 Y Y 0.0 0.0 5 1.06221980445658 1.06221980445658 1.06221980445658 1.06221980445658 4 - - 0.9361425072629972 HCT116-unstranded 5.0 78696 ATATTACAAGAGCCAAATTGGTTTCTAAAATAGCTAAATATCCCCATGTGGAGGACTATCGCCGCACCGTGACAGAGATTGATGAGAAAGAATATATCAGCCTTCGGCTCATCATATCAGAGCTGAGGAATCAATATG|ATCTGGTGGCTTGGGTCACAGCCAGCTTCCTGCACATTCCCCATGCCGAGGACATCCCAAACACAGTGACTCTGGGGAACAGAGTTGGCTTCTTGCTCCGACCCTATAACTTCTTTGATGAGGACCCCTCCATCTTCTCCCCTGGCA 8 0.396104799110324 0.7339427464675959 0.632234119234525 Y Y 3.60888739872753 3.46079439322662 3.46079439322662 1 0.0 0.0 Y 0.0 N Y 9207 3597 ENSG00000131467 ENSG00000131480 + - 17 17 40995523 41002724 coding coding PSME3 AOC2 40976402 40996617 + + 0.0 40991397 41002099 + - N - - N SA469 1 0.0 1.0 1 0 6 Y Y 0.0 0.0 7 0.936818855319341 1.06959633087641 1.06959633087641 0.936818855319341 4 - - 0.9919444305317472 HCT116-unstranded 5.0 78110 ACTGTTGAGAGTGAAGCTGCATCTTATCTGGACCAGATTTCTAGATATTATATTACAAGAGCCAAATTGGTTTCTAAAATAGCTAAATATCCCCATGTGGAGGACTATCGCCGCACCGTGACAGAGATTGATGAGAAAGAATATATCAGCCTTCGGCTCATCATATCAGAGCTGAGGAATCAATAT|GGCTGAAAAACTGGGTGGTAGCTGAAGACGTGGTGTTTAAACCTGTGGCTGCCCCCTGGAACCCGGAGCACTGGCTACAGCGCCCACAGCTGACTCGGCAGGTCCTGGGAAAGGAGGACCTGACAGCTTTTTCCTTGGGAAGCCCCCTACCCCGCTACCTCTACCTGGCTAGCAACCAGACTAATGCGTGGG 31 0.737529152489975 0.8940989668556211 0.558254589769713 Y Y 3.5676145660496603 3.18871505582277 3.18871505582277 0 0.0 0.0 Y 0.0 N Y 9207 3597 ENSG00000131467 ENSG00000131480 + - 17 17 40995523 41002724 coding coding PSME3 AOC2 40976402 40996617 + + 0.0 40991397 41001103 + - N - - N SA469 1 0.0 1.0 1 0 6 Y Y 0.0 0.0 26 1.35728086125007 1.3794104405095802 1.3794104405095802 1.35728086125007 4 - - 0.9855187992232192 HCT116-unstranded 5.0 2758 CTGGGGATCCTCATGGACCGCTTTGGCCCCCGACCCGTGCGGCTGGTTGGCAGTGCCTGCTTCACTGCGTCCTGCACCCTCATGGCCCTGGCCTCCCGGGACGTGGAAGCTCTGTCTCCGTTGATATTCCTGGCGCTGTCCCTGAATGGCTTTGGTGGCATCTGCCTAACGTTCACTTCACTCAC|GGATCCAGAGAATCACCCGCTGATGGTTTTTGCCCAGGCCTGAAACAACCAGAGAGCTACGGGAAAGGAAGGGCTTGGCTTGCCAGAGGAATTTTCCAAGTGCTCAAACGCCAGGCTTACGGCGCCTGTGATCCGTCCAGGAGGACAAAGTGGGATTTGAAGATCCACTCCACTTCTGCTCAT 9 0.8536923262019379 0.362343748344986 0.530645252961425 N Y 3.56335849579072 3.49896801659482 3.49896801659482 1 0.0 0.0 Y 0.0 N Y 107 1635 ENSG00000149150 ENSG00000134802 + - 11 11 57283259 57195053 coding utr5p SLC43A1 SLC43A3 57252007 57174427 - - 0.0 57268252 57193825 - + N - - N SA469 1 0.0 1.0 1 0 1 N N 0.0 0.0 8 1.33515128199056 1.15811464791446 1.33515128199056 1.15811464791446 4 - - 0.973015746160994 HCT116-unstranded 5.0 36042 TGCTGCACAGGCTGCTCTGTGAGCACTTCAGGGTCCTGTCCACGGTGCACACGCACTCCTCGGTCAAGAGCGTGCCTGAAAACCTTCTCAAGTGCTTTGGAGAACAGAATAAAAAACAGCCCCGCCAAGACTATCAGCTGGGATTCACTTTAATTTGGAAGAAT|GCCGACAGAGTCTATCATCCCCATCCATCTGGCTGCCAAGTACCACAAGGCCCAGAGTCTGCTCTGCCTGTTACGGCACGGTGCTGACCCAGAAGTCAGGGACACGACAGGCCTCACCACACTCAACTTAATGCTACTGCACTGGCCAG 5 1.0 0.262968193620558 0.0624782045402494 Y Y 3.51935717616377 3.58337693299909 3.51935717616377 2 0.9933099645193008 0.0 Y 0.0299448552985935 N Y 1312 209 ENSG00000106305 ENSG00000157999 + - 7 7 6063465 6076017 coding coding AIMP2 ANKRD61 6048876 6071007 + + 0.0 6057676 6072470 + - N - - N SA469 1 0.0 1.0 1 0 1 N Y 0.0 0.0 6 0.96632496099869 0.826170959021781 0.96632496099869 0.826170959021781 4 - - 0.920196481522302 HCT116-unstranded 5.0 329550 GGTGCTGGGAGAGACGCTTCCAGAGCAGCACCTGCAGGAGCTGAGGAATCGTGTTGCCCCAGGCAGTCCCTGTATGCTCACGCAGCTCCCGGATCCTGTTCCTTCGAAGAGGGCCCAGGGTTGTTCACCTGCCCAAAAATTGTGTCTTGAGG|TGTATTTGCATCCAGTATTGTTCTGATCTTGTCACAACGATCACTTTTCAAGTTTTACACGTACAGCTCAGCCTTTCTGTTAGCTGCAACTTCAGTGTTGGTGAATTATTATGCTTCTTTGCACATTGACTTCTATGGTGCCTACAACACGTCAGCTTTTGGAATTGAGCTGCTTCCTCGAAAAGGTCCCTCGCTGTGGATGGCACTTATCGTTCTACAGC 15 1.0 0.986694058739938 0.774572068062433 N Y 3.34831435801417 3.6214267651879104 3.34831435801417 0 0.0 0.00267379679144408 Y 0.00267379679144408 N Y 1338 3459 ENSG00000183665 ENSG00000170881 + - 8 8 125474391 125500155 coding coding TRMT12 RNF139 125463048 125486979 + + 0.0 125463498 125498072 + - N - - N SA469 1 0.0 1.0 1 0 1 N N 0.0 0.0 11 1.1507381214946202 1.36465738766991 1.36465738766991 1.1507381214946202 4 - - 0.9881312401564132 HCT116-unstranded 5.0 381731 GCCAGCGCGTGCGCTACGACTCCTCCAACCAGGTCAAGGGCAAGCCCGACCTGAACACGGCGCTGCCCGTGCGCCAGACGGCGTCCATCTTCAAGCAGCCGGTGACCAAGATTACCAACCACCCCAGCAACAAGGTCAAGAGCGACCCGCAGAAGGCGGTGGACCAGCCGCGCCAG|GCTGCAAGATCAAGGCCCTGCGGGCCAAGACAAACACCTACATCAAGACCCCAGTGCGGGGCGAGGAGCCGGTCTTCATCGTGACCGGCCGGAAGGAGGACGTGGAGATGGCCAAGCGTGAGATCCTGTCGGCGGCCGAACACTTCTCCATCATCCGCGCCACGCGCAGCAAGGCCGGGGGTCTGCCCGGCGCC 4 0.3514190673386769 0.57647808353624 0.373100376892302 N Y 3.21695400850029 3.43681151080804 3.21695400850029 0 0.0 0.014028424405783 Y 0.014028424405783 N Y 5704 4311 ENSG00000071655 ENSG00000181588 + - 19 19 1592882 1568057 coding coding MBD3 MEX3D 1576677 1554668 - - 0.0 1584539 1556922 - + N - - N SA469 1 0.0 1.0 1 0 1 Y N 0.0 0.0 6 1.13598506865495 1.34252780841039 1.34252780841039 1.13598506865495 4 - - 0.963965000195076 HCT116-unstranded 5.0 329720 CTCTTAATGCGAAACATCCTGTCATTATAAAGGTTCTCAGGAAGTCTTCTTATGGCTTCTTTTACATCTTCATCCTCGTATATTGTATCATCTCGCATTAACCCCAGTTTATTGAATCCTGCAGCATTGTAATACCATTTTCGAATACCATCCAGCCACTTGCCTGATGCTGAAA|CTGGTCTTCAGATTTTCAAGGTCTTCAGAGAAAATTGCATGATTTTTTGTCAGGAATGCTCCCAGTTGGTTATCCTCTATACCCACATCTTTAAGAAACAGAAGCATTTGCTTAATGTCTTTTTCAAAATCCAGTCTCAGAAGGAGGTTTGCTGCT 6 1.0 0.569415083685009 0.358895029710661 Y Y 3.55231620741665 3.36720643949681 3.36720643949681 2 0.0 0.0 Y 0.0 N Y 16761 633 ENSG00000156467 ENSG00000156469 - + 8 8 97247862 97273838 coding coding UQCRB MTERFD1 97238148 97251626 - - 0.0 97245455 97263134 + - N - 0.722255191653005 N SA469 3 0.0 1.81818181818182 1 8 2 N Y 0.0 0.0 11 1.23925643853267 0.8999362232201541 1.23925643853267 0.8999362232201541 4 - 6.63636363636364 0.947288455877326 HCT116-unstranded 5.0 130460 AGCTGTATCAGTGGGCACAGGTAAAACCAAATAGTAACCAAGTTAATCTTGCCTCCTGCTGTGTGATGCCACCAGATTTGACTGCATTTGCTAAACAATTTGACATACAGCTGTTGACTCACAATGATCCAAAAG|CTCTGAAATGCACACTTAAACCCAGGCCCTTTGTCTCTGACCGCCCTGGCCTGAACTGGCTGGGCGGAGATTCTCGCGAATTCTCGGATCTGCGCGGAAAACGCGCTCGAGGCAGTTCTCTGACGCATTTCCGGAGCGCCAGGGAAGAGGGAAGTCGTGGTGGTCGCGAGGGAGCCGGAAAGATGGTGGTTACCAGATCTGCACGGGC 10 0.6668390904004611 0.450453335575896 0.221666790670618 Y Y 3.46910819465161 3.3828009725769 3.3828009725769 0 0.0 0.0 Y 0.0 N N 420 6256 ENSG00000023909 ENSG00000067334 + - 1 1 94374966 94345474 coding intron GCLM DNTTIP2 94350761 94333373 - - 0.0 94360170 94344886 - + N - 19.0277288361735 N SA469 1 0.0 1.0 1 0 1 N Y 0.0 0.0 8 0.863053591120968 1.3941634933492602 1.3941634933492602 0.863053591120968 4 - 2.5 0.9344391885712272 HCT116-unstranded 5.0 358401 GTCGCAACCCATACTATTCGGACAGATGGCACAGAAACCGCTGCGCCTGGAGAAGTGGATACCAAAAAATGTGGTTCTGCTTTGGTTTCCAGTCTTGCCACGGGCTTGAAACCAAGATACCATTTTGCTGCTTTGGAAAAGACCTATTATGAGAGGCTTCCATATCG|GTTGAACCATGCCAATGTTGTAAAGGCCTGTGATGTTCCTGAAGAATTGAATATTTTGATTCATGATGTGCCTCTTCTAGCAATGGAATACTGTTCTGGAGGAGATCTCCGAAAGCTGCTCAACAAAC 4 0.0058353367534616 0.8927565481008171 0.8626554239468759 Y Y 3.65488030998075 3.57229479183167 3.57229479183167 0 0.0 0.0 Y 0.0 N Y 1695 2487 ENSG00000095485 ENSG00000213341 + - 10 10 102027437 101989376 coding coding CWF19L1 CHUK 101992050 101948055 - - 0.0 102013178 101982737 - + N - - N SA469 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 6 1.20237380643348 1.38678696692942 1.38678696692942 1.20237380643348 4 - - 0.948534747937992 HCT116-unstranded 5.0 358403 GATGACCATGTCCTCATCCTGCCTATTGGACACTACCAGTCAGTGGTGGAGCTTTCAGCAGAGGTGGTAGAAGAGGTGGAGAAGTATAAGGCCACTCTGAGACGGTTCTTTAAGAGTCGAGGGAAATGGTGTGTTGTATTTGAGAGAAATTATAAGAGCCATCACCTCCAGCTACA|GGAACTTGATCTCAAAATAGCAATTAAGTCTTGTCGCCTAGAGCTAAGTACCAAAAACAGAGAACGATGGTGCCATGAAATCCAGATTATGAAGAAGTTGAACCATGCCAATGTTGTAAAGGCCTGTGATGTTCCTGAAGAATTGAATAT 14 0.786867681679453 0.820684815157322 0.619706052702867 Y Y 3.46654754157187 3.76848670091893 3.46654754157187 1 0.0 0.0 Y 0.0 N Y 1695 2487 ENSG00000095485 ENSG00000213341 + - 10 10 102027437 101989376 coding coding CWF19L1 CHUK 101992050 101948055 - - 0.0 101997779 101985774 - + N - - N SA469 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 11 1.31302170273104 1.12123201581527 1.31302170273104 1.12123201581527 4 - - 0.98975341396599 HCT116-unstranded 5.0 329394 GGCATGATTTTGCTTTTTTTGATCCTGTAATGTATGAGAGTTTGCGGCAACTAATCCTCGCGTCTCAGAGTTCAGATGCTGATGCTGTTTTCTCAGCAATGGATTTGGCATTTGCAATTGACCTGTGTAAAGAAGAAGGTGGAGGACAG|AGATCATCTTCAGACACCAACGAAAGTGAAATAAAGTCAAATGAAGAGCCACTCCTAAGAAAGAGTTCTCGCCGGTTTGTCATCTTTCCAATCCAGTACCCTGATATTTGGAAAATGTATAAACAGGCACAGGCTTCCTTCTGGACAGCAGAAGAGGTCGACTTATCAAAGGATCTCC 9 0.9705650120371072 0.315597049371071 0.0485979789893152 Y Y 3.46720988898117 3.37295958784206 3.37295958784206 0 0.0 0.0 Y 0.0 N Y 5555 1928 ENSG00000104517 ENSG00000048392 + - 8 8 103425069 103251346 coding coding UBR5 RRM2B 103264501 103216730 - - 0.0 103274143 103244532 - + N - - N SA469 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 11 0.863053591120968 1.06221980445658 1.06221980445658 0.863053591120968 4 - - 0.933735714899958 HCT116-unstranded 5.0 298800 CTGAGACCTTTCAGGACAAGGTGAACTTTTTCCAGCGAGAGCTTCGGCAGGTACATATGAAAAGACCACATTCCAAAGTCACCCTGAAGGTCAGCAGACATGCCTTGTTGGAATCGTCTCTGAAAGCCACTCGGAATTTCTCCATCTCAGATTGGAGCAAGAACTTTGAGGTTGTTTTCCAGGATGAAGAAG|GAGGAACGTCTGCGGGGGACAGTGCTGCCCAGGATGGACAACAGCAAACAGCACCAACCACTGTATCAAACCCGTTTGCGAGCCGCCGTGCCAGAACCGGGGCTCCTGCAGCCGCCCGCAGCTCTGTGTCTGCCGCTCTGGTTTCCGTGGAGCCCGCTGCGAGGAGGTCATTCCCGATGAGGAATTTGACCCCC 2 0.347464386073563 0.496777889737863 0.779059493480342 N Y 3.3791139637714305 3.43681151080804 3.3791139637714305 0 0.0 0.0 Y 0.0 N Y 2013 1827 ENSG00000119682 ENSG00000119681 + - 14 14 75179818 75079306 coding coding KIAA0317 LTBP2 75119880 74964873 - - 0.0 75138111 75070408 - + N - - N SA469 1 0.0 1.0 1 0 2 N N 0.0 0.0 5 1.1654911743343 1.31302170273104 1.31302170273104 1.1654911743343 4 - - 0.987621098503144 HCT116-unstranded 5.0 58645 GTATTTAATGGGGCCCAGAATGGTGTGTCTCAGCTAATCCAAAGGGAGTTTCAGACCAGTGCAATCAGCAGAGACATTGATACTGCTGCCAAATTTATTGGTGCAGGTGCTGCAACAGTAGGAGTGGCTGGTTCTGGTGCTGGTATTGGAACAGTCTTTGGCAGCCTTATCATTGGTTATGCCAG|GGTACTAGATGGAAACTTGAGAAAGGACTGCTTATTGATAACAGCTAAGGTATTCCTGGAAGCAGAGTAAATAAAGCTCATGGCCCACCAGCTAGAAAGTATTCTTGCCATGAGAAAAAGAATGTGATAAGTTATTCAACTTATGAAATTCA 7 0.8515316649223851 0.618506047964259 0.21478387927439604 Y Y 3.69784855983781 3.34040178417331 3.34040178417331 1 0.0 0.0 Y 0.0 N Y 15525 1236 ENSG00000154518 ENSG00000115966 + - 2 2 176049335 176033110 coding utr5p ATP5G3 ATF2 176040986 175936978 - - 0.0 176043785 176015886 - + N - - N SA469 2 0.0 1.14285714285714 1 1 2 N Y 0.0 0.0 7 1.33515128199056 1.09172591013592 1.33515128199056 1.09172591013592 4 - - 0.96573607007476 HCT116-unstranded 5.0 58646 CGGACCGCGCTTGCGCATTGAGTCCCACTCCTTCGACCTCTGCCGCAGCCCGTGCCGCCGCCGCCTCCTGGGAAG|GGTACTAGATGGAAACTTGAGAAAGGACTGCTTATTGATAACAGCTAAGGTATTCCTGGAAGCAGAGTAAATAAAGCTCATGGCCCACCAGCTAGAAAGTATTCTTGCCATGAGAAAAAGAATGTGATAAGTTATTCAAC 2 0.000629766090082947 0.9016644652806328 0.968448768070732 Y Y 3.1677915299205 3.34040178417331 3.1677915299205 0 0.0 0.0 Y 0.0 N Y 15525 1236 ENSG00000154518 ENSG00000115966 + - 2 2 176049335 176033110 utr5p utr5p ATP5G3 ATF2 176040986 175936978 - - 0.0 176046384 176015886 - + N - - N SA469 1 0.0 1.0 1 0 2 N Y 0.0 0.0 6 0.656510851365522 0.590122113586986 0.656510851365522 0.590122113586986 4 - - 0.9514981326127748 HCT116-unstranded 5.0 225427 CGGTGGTCCGAGGTTAATGTAGTCCGTCGAAAGCCAGGAGCATTCCCCTGGGGGAGCCGGCAGCCTTCCGGAGTCACAGGTGGAGGCCCTGCACGTTTCAGAGAAAATCCCCTGTAGCCTCTCCGTGCCTTCGAGACGGCGGGAAAGGCACCGCCAGTAGATGCAGCTCTGCGGCCCCGGACACATCCTGCTTCACAGAGAAAAGCGGGCTGGAG|CTGCGCAGTCAGGCCCTGCTCCTCGTCGTCCTGGCCGCTCAGGACTCGCCGCAGCTTCTCCATGGCCCTGTTACAGGGCCGTAGCGGCCGCCACTCTGTTGCCTGCCCCTGACGCCCACCAGGAAACCCCGAACCCGAAACCCCA 1 0.297829384242944 0.688333585341776 0.795208930998998 Y Y 3.51935717616377 3.14887652049892 3.14887652049892 0 0.0 0.0 Y 0.0 N N 276 1184 ENSG00000176381 ENSG00000198818 - + 6 6 166721936 166756079 upstream coding PRR18 SFT2D1 166719168 166733216 - - 0.0 166722311 166755907 + - N - 0.327346107518782 N SA469 1 0.0 1.0 1 0 1 N Y 0.0 0.0 11 1.05484327803674 0.944195381739178 1.05484327803674 0.944195381739178 4 - 33 0.943557541369141 HCT116-unstranded 5.0 225282 GCCCATCAGTCCATCTGGCCAGCACATCTTGACCCTCCCAAAGCCGAGGCCTGGGGCCAGAGGTGGGAGCAGGAGAAGCTGGGTCCCAAAGTGAGGAGGCACCAGAGCGGCTCAGCCGGGGGGGCTGCGCCATTGCATCCTGGGGGGG|CCTTGTTGCTCAGGGCCATGATAACCAGCCCCAGCGTGGACAGGCTGCTGTTAATGGCCTGTGTTTCCCGAAGGCGTTCCCGCTCCCCGGGGCCGAGGGCTAAGCCGGGGTCAAGTCGCTCACTCCCGGCCAGGTCCACAAGACTGAGGGGGGCCCCACACTGCAGGCCTCGGCTGGAGTGCTCCCCAGAAATCTGTAGCTGGAATACACTG 14 0.944447305221686 0.8817519848952899 0.291682564755117 Y Y 2.9291657373094906 3.67167574670008 2.9291657373094906 0 0.0 0.0 Y 0.0 N Y 1182 10243 ENSG00000112511 ENSG00000237649 - + 6 6 33384230 33377701 utr5p intron PHF1 KIFC1 33378176 33359313 + + 0.0 33380025 33374263 - + N - 35.5358481096851 N SA469 1 0.0 1.0 1 0 2 N Y 0.0 0.0 18 1.1064789629756 1.5121879160666498 1.5121879160666498 1.1064789629756 4 - 6 0.974757350200695 HCT116-unstranded 5.0 225238 GTCCACGCTGGGGCTGGTTATCATGGCCCTGAGCAACAAGGAGTCCCACGTGCCTTACCGGAACAGCAAACTGACCTACCTGCTGCAGAACTCTCTGGGTGGTAGTGCTAAGATGCTCATGTTTGTGAACATTTCTCCACTGGAAGAGAACGTCTCCGAGTCCCTCAACTCTCTACGCTTTGCCTCCAA|GGCCCCCCCAGGATGCAATGGCGCAGCCCCCCCGGCTGAGCCGCTCTGGTGCCTCCTCACTTTGGGACCCAGCTTCTCCTGCTCCCACCTCTGGCCCCAGGCCTCGGCTTTGGGAGGGTCAAGATGTGCTGGCCAGATGGACTGATGGGCTGCTATACTTGGGTACCATCAA 9 0.17852216256186298 0.28673931649962703 0.38339590025570897 Y Y 3.3524907226864 2.95215540275154 2.95215540275154 0 0.0 0.0 Y 0.0 N Y 10243 1182 ENSG00000237649 ENSG00000112511 + - 6 6 33377701 33384230 coding utr5p KIFC1 PHF1 33359313 33378176 + + 0.0 33374652 33380025 + - N - - N SA469 1 0.0 1.0 1 0 2 N Y 0.0 0.0 9 1.24663296495251 0.8999362232201541 1.24663296495251 0.8999362232201541 4 - - 0.948027012569374 HCT116-unstranded 5.0 380757 AGAGGGCGAGTTTGTCTTCGCCACCTCCCTGGACACCAAGGACATCGAGCAGATCGCCGAGTTCCTGGAGCAGTCAGTGAAAGACTCCTGCGAGGGGCTGATGGTGAAGACCCTGGATGTTGATGCCACCTACGAGATCGCCAAGAGATCGCACAACTGGCTCAAG|AAGGGTGACATCACTAAGGAAGCCTGGAAAGTCCCAGCCCTCCACGTGATCCCACGGATGAAAATAGCTCCGGGTGAGCTCTGGAACAGCTGAAAAAGCTGGAGCAACCAAGCAGGGCCTACAAGCCGAGGAGGGCTGTTTA 3 0.082559905490447 0.971771448869157 0.747075351278322 Y Y 3.66016945000958 3.4451253122330296 3.4451253122330296 0 0.0 0.0 Y 0.0 N N 6930 287 ENSG00000105486 ENSG00000105499 + - 19 19 48673601 48614109 coding upstream LIG1 PLA2G4C 48618703 48551100 - - 0.0 48626191 48614161 - + N - - N SA469 1 0.0 1.0 1 0 2 N Y 0.0 0.0 7 0.9589484345788531 0.944195381739178 0.9589484345788531 0.944195381739178 4 - - 0.980493998053108 HCT116-unstranded 5.0 239900 GAACCCTCAACAGGCACACCAGCACTCAGGAGGACCTGGCCTGGCCCCACTTGGAGCAGCAGGGCACCCTGGCATGATGCCTCATCAACAGCCCCCTCCCTACCCTCTGATGCACCACCAGATGCCACCACCTCATCCACCCCAGC|CAGCGCGTGAGGCGGGCAGCGCGGTTGAGGCCGAAGAGCTGGTGAAGGGCAGCCCGGCGTGGGAGCCGCCTGCCAACGACACGCGGGAAGAAGCCGGCCCACCAGCGGCTGGGGAAGATGAGGCGTCGTGGACGGCGCCCGGTGGCGAGCTGGCCGGGCCAGAAGAGGTGCTGCAGGAGTCGGCT 11 1.0 0.4671310176624621 0.746093738301598 Y Y 3.050537982970209 3.17501882841312 3.050537982970209 1 0.0 0.0 Y 0.0 N Y 12890 975 ENSG00000173473 ENSG00000114646 + - 3 3 47823596 47622282 coding utr5p SMARCC1 CSPG5 47626762 47603729 - - 0.0 47651556 47619418 - + N - 8.76950185567983 N SA469 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 5 0.9589484345788531 1.35728086125007 1.35728086125007 0.9589484345788531 4 - 6.2 0.948418914906976 HCT116-unstranded 5.0 238642 GAGGGTGAGGACTGTGGAAAGCTGGGGAGGGCACACTGTGGGCCATGGTGCCCACAGCACCTCCAGCTGCAGCAGAGGGCCTCGTGTGGTCATATCTGCACCGAGTTCCATAGGCACAGTAGCCCTTCTGGTAGTACTTGCAGATGGTGGACGGTTTGCTGTTTGCCAAGTCATGTGAGAATAGGCACTGACTTCCTTCCCGACACACACCATGCATAAAA|TACTTCCTCATTTGGGGCAGCCTCCCTCTCGCTCATGGCACACTCCGCTTCCTCGACCAGCACGTACTCATGGTCAGGCCCTCTGTCCCCAGGATGCAGGAGGCCGATGTGCTGGCTGCCGTCTTCATGATGAAGGCCACGCTGGAGGATGAGAGCATCTTGTTTGCAGCAACAGACATGGGGCAGAGGTGAGGCATCCTCTCGCACGCTT 4 0.2393241794855229 0.476082920555319 0.626899623107698 Y Y 3.56488607910057 3.27551679143744 3.27551679143744 0 0.0 0.0 Y 0.0 N Y 1232 217 ENSG00000075975 ENSG00000154743 - + 3 3 12625212 12581122 coding intron MKRN2 TSEN2 12598513 12525931 + + 0.0 12610374 12545283 - + N - 5.08475518459956 N SA469 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 5 1.3941634933492602 1.40891654618893 1.40891654618893 1.3941634933492602 4 - 1.6 0.9408701685234692 HCT116-unstranded 5.0 254196 CTGGTGTCCTGGGGGGAGGTTTGGACCAAACAATGCATCTCCAGGTGCGTGTGCCATGGAGACTTGGGGGCCTGAAGGCAGCCCTGGGCAGCCTCCTCCAGCCTCCCCTCCACCTCAGAATCTGCCTCTTCCAGGGACAGTGAGCTTCTTCTCTCCTTGTTAATCCAAACAGCATTGACCATCGATTCTGCAGGAGCAGGTGTGTTTCCTCCTT|GCTCTCGATCTGCTTCACCATCTTGGCTGCTGGAGTCTGACGAGCGGCTGTAAGGACCGATGGAAATGGATCCAAAGCACCAAACAGAGCTTCAAGACTCGCTGCTTGCTCTCTCCCTTTATAAACTGGCACGCCCGGCGTGCGTGTGGCGGGGGCGCGCGCGCCCGGCCGGACCTCCGC 74 0.90048619737838 0.8090124404132041 0.3458580993918061 Y Y 3.6491271616355 3.44247137319745 3.44247137319745 0 0.0 0.0 Y 0.0 N Y 1814 15336 ENSG00000188959 ENSG00000136810 - + 9 9 112970469 113018920 coding coding C9orf152 TXN 112952328 113006091 - - 0.0 112963754 113018692 + - N - 0.615846746799467 N SA469 1 0.178378378378378 1.0 1 0 2 N Y 0.0 0.178378378378378 91 1.61545928594438 1.36465738766991 1.61545928594438 1.36465738766991 4 - 102.879120879121 0.98975341396599 HCT116-unstranded 5.0 254333 TTTGGTGCTTTGGATCCATTTCCATCGGTCCTTACAGCCGCTCGTCAGACTCCAGCAGCCAAGATGGTGAAGCAGATCGAGAGCA|AGGAGGAAACACACCTGCTCCTGCAGAATCGATGGTCAATGCTGTTTGGATTAACAAGGAGAGAAGAAGCTCACTGTCCCTGGAAGAGGCAGATTCTGAGGTGGAGGGGAGGCTGGAGGAGGCTGCCCAGGGCTG 74 0.0009394660080019359 0.72372556234622 0.3325511628766229 Y Y 3.4131060647942 3.6616970333194314 3.4131060647942 0 0.0 0.0 Y 0.0 N Y 15336 1814 ENSG00000136810 ENSG00000188959 + - 9 9 113018920 112970469 coding intron TXN C9orf152 113006091 112952328 - - 0.0 113018692 112963754 - + N - 16.2406721582737 N SA469 1 0.0 1.0 1 0 2 N Y 0.0 0.0 5 0.582745587167149 0.5606160079076371 0.582745587167149 0.5606160079076371 4 - 9 0.959403442698134 HCT116-unstranded 5.0 37277 TACTGCTATTCCATCGACCTCTCAGAGCGAGTGGCACTGAAGCTCGATCAGACCTTCCCCTTCAGCCTGATGAGGAGGATATCCGTGTTCAAGTACGTCTCAGGGTCTTCAGCCGAGAGGAGGGCAGCCCAGAGCCGGAA|TTTCATGATCAACATGGGAGACTCCCACGTGGACACCAGCTCCACCGTGTCCGAGGCGGTGGCCGAAGAAGTATCTCTTTTCAGCATGACGGACATGATTCTGTTTTCGCTCATCGTGGGTCTCCTAACCTACTGGTTCCTCTTCAG 2 0.5583124514847111 0.338278192655827 0.5762296654833321 Y Y 3.1258962026266803 3.45872825368684 3.1258962026266803 1 0.0 0.0 Y 0.0 N Y 5592 4572 ENSG00000005486 ENSG00000127948 + - 7 7 75518244 75616173 coding utr5p RHBDD2 POR 75471920 75528518 + + 0.0 75513166 75583307 + - N - - N SA469 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 5 0.7819118005027571 0.7376526419837329 0.7819118005027571 0.7376526419837329 4 - - 0.929356960425777 HCT116-unstranded 5.0 127845 GGAACTTATTAAAGAAAGAGAAACGGCAATTCGGCAGCTGGAGGCTGACATTTTGGATGTCAATCAGATATTTAAAGATTTGGCCATGATGATCCATGACCAGGGTGATCTGATTGATAGCATAGAAGCCAATGTGGAAAGCTCAGAGGTGCACGTCGAAAGAGCCACTGAACAGTTACAGCGAGCTGCTTACTATCA|GGGCAGGTAAGCCCCCTCCCGGTTTACATCTGGATGTAGTCAAAGGAGACAAACTAATTGAGAAACTGATTATTGATGAGAAGAAGTATTACTTATTTGGGAGAAACCCTGATTTGTGTGACTTTACCATTGACCACCAGTCTTGCTCTCGGGTCCATGCTGCACTTGTCTACCACAAGCATCTGAAGAGAGTTTTCCTG 6 0.8315281685346021 0.8310609959817501 0.595200197442012 N Y 3.63399663687184 3.5240772547391304 3.5240772547391304 0 0.0 0.0 Y 0.0 N Y 333 1320 ENSG00000117758 ENSG00000117751 + - 1 1 28150963 28178187 coding coding STX12 PPP1R8 28099694 28157289 + + 0.0 28146243 28159267 + - N - - N SA469 1 0.0 1.0 1 0 1 N N 0.0 0.0 5 1.23187991211283 1.19499728001365 1.23187991211283 1.19499728001365 4 - - 0.983587814839638 HCT116-unstranded 5.0 358930 GTGTGCATTCCTTGATGATTCCATGTTCACATCTGGAGGACAGGGCTTATGGCAGAATTGGCCATCATGATGCAGGCCTTCCAAGTTCTGAGTCTCAACTGTAGTAACAGTCTTCCTCAATTCCAATCCCTTGGAGTTGATGTCAGTCACTTGGGCATTAACACTTTTGGACGATAATCTAGCAACAGACGTAAGAAC|TAGCAACCCTTGGTGTCCGCAGCCCGTGTGGGACGGCGACTGCGACGGCTGCCCCCGTGGCTGCCGTGTGGCCTTGGCATCCGTCCGGCTGCTGCAACCCGGGCCGCGGTGGCTTTTGCTGGAAGGCGTTGCAGCGGGGTGATACCGGCACCCGGCGACGAGGCGTCCGCTCGTTTGCCTCGG 41 1.0 0.7046786109973492 0.6217419943762379 Y Y 3.59528445727371 3.53871326596283 3.53871326596283 0 0.0 0.0 Y 0.0 N Y 1598 541 ENSG00000026103 ENSG00000138134 - + 10 10 90775542 90734910 coding utr5p FAS STAMBPL1 90750414 90639491 + + 0.0 90762786 90640395 - + N - 3.37610528339029 N SA469 1 0.0 1.0 1 0 2 N Y 0.0 0.0 49 1.43104612544844 1.3794104405095802 1.43104612544844 1.3794104405095802 4 - 1.48979591836735 0.98975341396599 HCT116-unstranded CGHSA0014 5.0 359089 TCCTGTAAACAGGGCCTTAACGCCAGCTGCTACTCTAAGTGCTGTTCAGAATTTAGTGGTTGAAGGACTGCGATGTGTAGTTTTGCCAGAAGATCTTTGCCACAAATTTCTGCAACTGGCAGAATCTAATACAGTGAGAGGAATAGAAACCTGTGGAATACTCTGTGGAAAACTG|GTTCTTACGTCTGTTGCTAGATTATCGTCCAAAAGTGTTAATGCCCAAGTGACTGACATCAACTCCAAGGGATTGGAATTGAGGAAGACTGTTACTACAGTTGAGACTCAGAACTTGGAAGGCCTGCATCATGATGGCCAATTCTGCCATAAGCCCTGT 7 1.0 0.994971123673852 0.4204148311352679 Y Y 3.2965682984157003 3.59528445727371 3.2965682984157003 0 0.0 0.0 Y 0.0 N Y 541 1598 ENSG00000138134 ENSG00000026103 + - 10 10 90734910 90775542 coding coding STAMBPL1 FAS 90639491 90750414 + + 0.0 90674415 90762786 + - N - - N SA469 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 5 1.01796064593755 1.06959633087641 1.06959633087641 1.01796064593755 4 - - 0.98975341396599 HCT116-unstranded CGHSA0014 5.0 381040 AGCCTCAGCTGGGCCATCCGCTGGGCCAGGCAGTGGGCAGCCGTCAGCACCCACTTTGGGTGCACCAGGACACCCCCGCACAGGTGGGAGCCATTTCTCTGCAGTGAGGCCATGTACGGGCGCGAGTGGGGGATCACCTCCCGGCCCCCGATGATCTGGGTCCCAAAGGAGCTGC|AATAGGGGCGGACGCCAGGTTTGGTCCCGAGGGCCATGGTTTGCTGAGACCCCAGGGCCCCATTTTCTGTCCCAACTTGGTGGGAAACCTCATCCTCACAGCTCCTCGACCCTGAATCAGCCACTGAGCGACTTTCCGGGTGCCCAGAAGCGGAACGCAGGCAGGTT 6 1.0 0.579104349005273 0.393171133091732 Y Y 3.28921301884709 3.4246962998707207 3.28921301884709 7 0.0 0.020827150363995 Y 0.020827150363995 N N 72 2731 ENSG00000197540 ENSG00000099804 - + 19 19 549919 542087 coding downstream GZMM CDC34 544034 531714 + + 0.0 547280 542809 - + N - - N SA469 1 0.181818181818182 1.0 1 0 1 N Y 0.0 0.181818181818182 8 1.30564517631121 1.04009022519706 1.30564517631121 1.04009022519706 4 - - 0.9583299407733028 HCT116-unstranded 5.0 326584 AATTTCTCAGTCTTTTACTATGAGATTCTAAACTCTCCTGAAAAGGCCTGTAGCCTGGCAAAAACGGCATTTGATGAAGCAATTGCTGAATTGGATACGCTGAATGAAGAGTCTTATAAAGACAGCACTCTGATCATGCAGTTACTTAGGGACAATCTCACTC|GGAGCGGGCACTGGACACAATGAACTTTGAGATGCTCAAAGGCCAGCCTATTCGCATCATGTGGTCCCAGCGAGACCCAGGACTTCGCAAGTCAGGTGTGGGCAACATCTTCATCAAGAACCTGGAGGACTCCATTGACAACAAGGCTTTATATGATACCTTCTCCACCTTT 9 1.0 0.987679670342816 0.391809573356919 Y Y 3.5514509715161 3.3755202409218 3.3755202409218 3 0.0 0.0 Y 0.0 N Y 28551 660 ENSG00000166913 ENSG00000101104 + - 20 20 43537173 43587676 coding coding YWHAB PABPC1L 43514317 43538703 + + 0.0 43534737 43541301 + - N - 0.552671964254146 N SA469 2 0.0 1.5 1 3 2 N Y 0.0 0.0 6 1.20237380643348 0.907312749639992 1.20237380643348 0.907312749639992 4 - 3.83333333333333 0.955152161520708 HCT116-unstranded 5.0 325776 AGAGTACCGTGAGAAGATAGAGGCAGAACTGCAGGACATCTGCAATGATGTTCTGGAGCTGTTGGACAAATATCTTATTCCCAATGCTACACAACCAGAAAGTAAGGTGTTCTACTTGAAAATGAAAGGAGATTATTTTAGGTATCTTTCTGAAGTGGCATCTGGAGACAACAAACAAAC|GGAGCGGGCACTGGACACAATGAACTTTGAGATGCTCAAAGGCCAGCCTATTCGCATCATGTGGTCCCAGCGAGACCCAGGACTTCGCAAGTCAGGTGTGGGCAACATCTTCATCAAGAACCTGGAGGACTCCATTGACAACAAGGCTTTATATGATACCTTCTCCACCTTTG 7 0.995849787241991 0.767030516349192 0.43091107169466897 Y Y 3.5000010863647097 3.3755202409218 3.3755202409218 0 0.0 0.0 Y 0.0 N Y 28551 660 ENSG00000166913 ENSG00000101104 + - 20 20 43537173 43587676 coding coding YWHAB PABPC1L 43514317 43538703 + + 0.0 43532757 43541301 + - N - 0.552671964254146 N SA469 2 0.0 1.28571428571429 1 2 2 Y Y 0.0 0.0 7 1.224503385693 1.31302170273104 1.31302170273104 1.224503385693 4 - 3.28571428571429 0.935262853906797 HCT116-unstranded 5.0 381689 ATAGCGGCCGCGGGCGGCGGCGGCAGCGGTTGGAGGTTGTAGGACCGGCGAGGAATAGGAATCATGGCGGCTGCGCTGTTCGTGCTGCTGGGATTCGCGCTGCTGGGCACCCACGGAGCCTCCGGGGCT|GGTTCTACTGGGACTTCACCATGCTGCTGTTCATGGTGGGAAACCTCATCATCATCCCAGTGGGCATCACCTTCTTCAAGGATGAGACCACTGCCCCGTGGATCGTGTTCAACGTGGTCTCGGACACCTTCTTCCTCATGGACCTGGTGTTGAACTTCCGCACCGGCATTGTGATCGAGGACAACACGGAGATCATCCTGGACCCCG 10 1.0 0.932340719629438 0.5160923815552121 Y Y 3.25935319690388 3.40169305405954 3.25935319690388 0 0.0 0.0 Y 0.0 N Y 51516 1417 ENSG00000172270 ENSG00000099822 + - 19 19 583493 617159 coding coding BSG HCN2 571297 589893 + + 0.0 572701 603544 + - N - - N SA469 3 0.15625 2.52631578947368 2 19 2 N Y 0.15625 0.0 19 0.944195381739178 1.34990433483023 1.34990433483023 0.944195381739178 4 - - 0.924618621230294 HCT116-unstranded 5.0 317379 GCGGGGCACGCTGGGACGTCTCGCTGGCGGGAGGCCACGGGCTTTCCACAGCGCGGGGGAACGGGAGGCTGCAGGATGGTCAAGCTGACGGCGGAGCTGATCGAGCAGGCGGCGCAGTACACCAACGCGGTGCGCGACCGGGAGCTGGACCTCCGGG|GCTTTGATTTTGGAGAAAGAACCTTGAGGATCGGTGGGGACTTTCTTGGCCTGAAAGGTATCACCAGCAGCAGGAGCAGGAGGCTGCTCACATTTCGTGTCTTCACTTGGGGTGGACGTTGGCTGCAACCCTCAAATGCTGGGAGTCGTCAACCAACTGAGCCCTGTTGTCCAATGTGCCCCGGGCAAGGATGTGGGTGC 12 1.0 0.43268971483183705 0.364270638488588 Y Y 3.4278353619737403 3.2557196212609 3.2557196212609 0 0.0 0.0 Y 0.0 N N 1905 2273 ENSG00000131876 ENSG00000131871 + - 15 15 101835487 101817705 coding upstream SNRPA1 VIMP 101821715 101811022 - - 0.0 101835302 101818190 - + N - - N SA469 3 0.0 2.31707317073171 1 27 3 N Y 0.0 0.0 41 1.02533717235739 1.49743486322698 1.49743486322698 1.02533717235739 4 - - 0.905853793167214 HCT116-unstranded 5.0 335658 ATTTTTGTGGTTGCAAAGCAGGTTGTCAGTTTCCTGCTTATGAAGATAATCCAGTTTCTTCGGGACAGCTGGAAGAGTTCCCTGTATTGAACACTGATATACAAGGAATGAATAGAAGTCAAGAAAAACAGACCTGGTGGGAAAAAGCCTTGTACTCTCCTCTTTTTCCTGCATCAGAGTGTGA|AGTTTCTCCTTGGACCAAGATGACTGATGGAAAACTCTCCACCTCTACAAATGGCGTAGCCTTCATGGGTATTCTGGATGGTCGACCAGGAAACCCCCTTCAGAACCTGCAACACGTCAATCTCAAGGCGCCCCGACTCCTCTCCGCGCCTGAGTACGGGCCCAAGCTGAA 4 1.0 0.728834169045181 0.467754409020463 Y Y 3.472331195140661 3.4378445805779303 3.4378445805779303 0 0.0 0.0 Y 0.0 N Y 1400 7353 ENSG00000170871 ENSG00000132405 + - 4 4 6885897 7034845 coding intron KIAA0232 TBC1D14 6783102 6910969 + + 0.0 6873409 6925100 + - N - 0.0108242315722017 N SA469 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 6 1.21712685927316 1.2835155970516998 1.2835155970516998 1.21712685927316 4 - 5.66666666666667 0.9805975981117968 HCT116-unstranded 5.0 128489 CGGGCGCAGACGGCGGCAGTGCGGCTTGCTCTTGGAAGTTCAGGCTCGGTTGTCTTTTGGGAGCCATGGAGAGTGACTTTTATCTGCGTTACTACGTGGGGCACAAGGGCAAGTTCGGCCACGAGTTCCTGGAGTTTGAGTTTCGACCGGACGGGAAGTTAAGATATGCCAACAACAGCAATTACAAGAATGATGTCATGATCAGAAAAG|AGGCTGGGTTTGCTGCTGAAGGTGTGGAGTCAGGGACAGCCTTCAGTGACATTAATCTGCAGGAGAAGGACTGGACTGACTATGATGAAAAGGCCCAGGAGTCTGTGGGAATCTATGAGGTCACCCACCAGTTTGTGAAGTGCTGATCCCTCTTCCTTCCCAGTTGCCCTTAAG 27 0.812662981698975 0.879743539368543 0.728999753954082 N Y 3.2452463943403 3.1804012543977795 3.1804012543977795 0 0.9942678011643532 0.0 Y 0.0 N Y 1809 1081 ENSG00000162385 ENSG00000162384 + - 1 1 53704282 53686289 coding coding MAGOH C1orf123 53692564 53679771 - - 0.0 53701249 53681728 - + N - - N SA469 2 0.0 1.1363636363636398 1 3 2 Y N 0.0 0.0 22 1.6007062331047 1.2835155970516998 1.6007062331047 1.2835155970516998 4 - - 0.9796281886675692 HCT116-unstranded CGHSA0332 5.0 299112 TGAGCTCACAACTTCATTCCCTTACACACTTCAGTGACATCAGTGCTTTGACAGGGGGAACTGTTCATCTTGATGAGGATCAGAATCCTATTAAGAAGCGGAAGAAGATACCTCAGAAAGGTCGGAAGAAAAA|AGCCAATTGCAGGTAGCATGGCCCAGGGCTTGATTGAGGTGGAGCGAAAGTTCCTTCCAGGGCCTGGCACAGAGGAGCGGCTGCAGGAGTTGGGGGGCACCCTGGAGTACCGGGTCACCTTCCGAGACACCTACTATGACACCCCTGAGCTGAGCCTCATGCAGGCTGACCACTGGCTGCGAC 9 1.0 0.325627200410523 0.358497225417844 Y Y 3.1426958721453304 3.40591861909494 3.1426958721453304 0 0.0 0.0 Y 0.0 N Y 1892 821 ENSG00000129460 ENSG00000259431 + - 14 14 23979071 24029480 coding utr5p NGDN THTPA 23938897 24025216 + + 0.0 23946769 24025952 + - N - - N SA469 1 0.0 1.0 1 0 1 N Y 0.0 0.0 7 0.7819118005027571 1.13598506865495 1.13598506865495 0.7819118005027571 4 - - 0.955167356271032 HCT116-unstranded 5.0 2590 AGGAACCTGGAGGGAGGCGGAGGAATATGTCCGAGAGGGAAGTGTCGACTGCGCCGGCGGGAACAGACATGCCTGCGGCCAAGAAGCAGAAGCTGAGCAGTGACGAGAACAGCAATCCAGACCTCTCTGGAGACGAGAAT|GAGAAGGAAGCCAACATCCTTTTGGAGCCATGAATATTGTCCGAACTCCATCTGTTGCTCAGATTGGAATTTCAGTGGAATTATTAGACAGTATGGCTCAGCAGACTCCTGTAGGTAATGCTGCTGTATCCTCAGTTGACTCATTCACTCAG 3 0.9785787656771692 0.7146304268026021 0.35583271036048203 N Y 3.47439733468044 3.64656650855576 3.47439733468044 1 0.0 0.0 Y 0.00341296928327639 N Y 552 853 ENSG00000074266 ENSG00000149196 + - 11 11 85989781 86056969 coding coding EED C11orf73 85955586 86013253 + + 0.0 85956385 86048421 + - N 3.15141893129866 2.03616007597792 N SA469 3 0.0 2.125 1 7 2 N N 0.0 0.0 8 0.96632496099869 1.01058411951771 1.01058411951771 0.96632496099869 4 23 32.875 0.9146117636464208 HCT116-unstranded 5.0 2674 TCTTGTGAAAATGCCATTGTGTGCTGGAAACCTGGCAAGATGGAAGATGATATAGATAAAATTAAACCCAGTGAATCTAATGTGACTATTCTTGGGCGATTTGATTACAGCCAGTGTGACATTTGGTACATGAGGTTTTCTATGGATTTCTGGCAAAAG|GTGCAAACAGCTGCACAGCAAGTGGCAGAGGATAAATTTGTTTTTGACTTACCTGATTATGAAAGTATCAACCATGTTGTGGTTTTTATGCTGGGAACAATCCCATTTCCTGAGGGAATGGGAGGATCTGTCTACTTTTCTTATCCTGATTCAAATGGAATGC 3 1.0 0.7861707633804959 0.285442079956518 N Y 3.44190231174398 3.30232144676095 3.30232144676095 0 0.0 0.0 Y 0.0 N Y 552 853 ENSG00000074266 ENSG00000149196 + - 11 11 85989781 86056969 coding coding EED C11orf73 85955586 86013253 + + 0.0 85988180 86017287 + - N - - N SA469 2 0.0 1.14285714285714 1 1 2 Y N 0.0 0.0 7 1.0474667516169 1.08434938371609 1.08434938371609 1.0474667516169 4 - - 0.9693735485085192 HCT116-unstranded 5.0 58960 AGAAGAAATGAAACTTGCCAGTCAGAACATCAGCAGACTTCAGGATGAGCTGACAACTACCAAGAGGAGTTACGAGGATCAGTTAAGTATGATGAGTGACCACCTGTGCAGCATGAATGAGACATTATCTAAACAGAGAGAAGAGATTGACACACTAAAGATGTCCAGTA|AGAGTCAACCTATTTGATTTCTTGACAAGACCACAATCTGATCCCAAAGATGTGCTCCACAAATCCAGGCAAATGGGTCACCTTTGATGATGATCCTGCTGTTCAATCTTCTCAAAAGTCAAAGAATTTTCCTCTGGAGAATCAAGGTG 4 1.0 0.643912315871987 0.097727051860536 Y Y 3.26928270992137 3.49424793801946 3.26928270992137 1 0.0 0.0 Y 0.0 N Y 340 60 ENSG00000162869 ENSG00000068781 + - 2 2 48742525 49003638 coding utr5p PPP1R21 STON1-GTF2A1L 48667737 48757064 + + 0.0 48738607 48807726 + - N - 0.315485244904168 N SA469 1 0.0 1.0 1 0 1 N Y 0.0 0.0 6 1.2613860177921798 0.863053591120968 1.2613860177921798 0.863053591120968 4 - 0 0.957494811000734 HCT116-unstranded 5.0 359636 ATCCTGCCTCTGAAAACGTATAGCCAAGTGTACAAGAGTATAGCCAACATCAAAGGCAGAAGGACGATTCAGCAAGCGTACTTCATCTGCGGTGAGCTGACGTGCAATGTCTCCTCCTGATGACTTGTATGCTTCTATGGCAGCTAAATCACCTTCTACAACC|CCTGGCGGCGGCGGCTCCTCCTCCAGCTCCTGCTCCTCCTCCCCGTCCGACGGGCGCTTGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCAGCGGCGACTCCCCGCGCAGCCCGCGGCTACGAGTCGAGCCCGGCCCCTCTCCGCCTCCCTTCGCGCCGCC 10 1.0 0.617104079050057 0.8748987190393149 Y Y 3.5910588922383098 2.87629332198529 2.87629332198529 1 0.99388379204893 0.00305810397553508 Y 0.498470948012232 N Y 2088 91 ENSG00000019995 ENSG00000249456 - + 10 10 126676758 126631450 coding intron ZRANB1 RP11-298J20.4 126630692 126605712 + + 0.0 126655163 126605841 - + N - 0.536020051960558 N SA469 1 0.242424242424242 1.0 1 0 1 N Y 0.0 0.242424242424242 7 1.14336159507479 0.96632496099869 1.14336159507479 0.96632496099869 4 - 4.85714285714286 0.935295951213855 HCT116-unstranded 5.0 238071 GCCTAACGCCGCCAACATGGTGTTCAGGCGCTTCGTGGAGGTTGGCCGGGTGGCCTATGTCTCCTTTGGACCTCATGCCGGAAAATTGGTCGCGATTGTAGATGTTATTGATCAGAACAGGGCTTTGGTCGATGGACCTTGCACTCAAGTGAGGAGACAGGCCATGCCTTTCAAGTGCATGCAGCTCACTGATTTCATCCTCAAGTTTCCGCACA|GTTTCACTTCTCCGAACCCTGAGGCAGTGTGTGAAGCTGGGACGCCAGCCATGTTCCAGACCGCTTGGCGCCAGGGGATGAGGCCAGAACTGAGAAGGAAGGATTAACTCCAAAGGATCATGTGTCCAAAGAAACAGAGTCCTTCAGACTGATGGTGGGGGGCCTGCCAGGGAATGTTTCCCAGCAC 28 0.4338193730153471 0.510919297162401 0.7182058836884359 N Y 3.4367716580146896 3.5816815158199 3.4367716580146896 1 0.0 0.0 Y 0.0 N Y 43284 1280 ENSG00000188846 ENSG00000177842 + - 3 3 40503861 40560227 coding utr5p RPL14 ZNF620 40498783 40547483 + + 0.0 40500227 40547795 + - N - - N SA469 4 0.0 2.44444444444444 1 8 2 Y N 0.0 0.0 9 1.27613907063186 1.37203391408974 1.37203391408974 1.27613907063186 4 - - 0.9319047686773292 HCT116-unstranded 5.0 239634 CTGGCAGGCCCCCCACCATCAGTCTGAAGGACTCTGTTTCTTTGGACACATGATCCTTTGGAGTTAATCCTTCCTTCTCAGTTCTGGCCTCATCCCCTGGCGCCAAGCGGTCTGGAACATGGCTGGCGTCCCAGCTTCACACACTGCCTCAGGGTTCGGAGAAGTGAAA|TTTTTATGATTGCCACTTATGCTTTCTTGCCAGATGCCTTTGGAGCAGGTGCTTTCTGGGCTGGAGCTTTTTGACCCTTCTGAGCTTTTGGAGCAGGCGCTGCTTTCTGGCCTGTGGCTTTCTGGGCAGGAACCTTCTGGGCTGGAGCCTTTTTACTCGCGGCGGTGATCTTTTTTGCTGGAACTTTAGCAGCAGCA 6 0.9267915179484872 0.4595491896530871 0.4520549068138161 N Y 3.52936639476796 3.18611454994968 3.18611454994968 1 0.0 0.0 Y 0.0027247956403269 N N 1280 43284 ENSG00000177842 ENSG00000188846 - + 3 3 40560227 40503861 utr5p utr3p ZNF620 RPL14 40547483 40498783 + + 0.0 40547795 40503739 - + N - 4.80883046990181 N SA469 4 0.0512820512820513 2.75 1 11 2 Y N 0.0 0.0512820512820513 12 1.06221980445658 1.43842265186828 1.43842265186828 1.06221980445658 4 - 145.833333333333 0.905853793167214 HCT116-unstranded 5.0 2739 GAACGAAAGGGCCCCAAGAAAGGGACTGCTGCTCTGGGCAAAGCCAACAGACAGGTGTCCATTACTGGCTTCTTCCAGAGGAAATAAACTGCCATCTCTGGTAGATCAGAGACTTGGAGTGGTCAAGGGAGAAGACCAAGAAATGTACTCCTCACTTACTAT|ACTTTATATTCAGAGCACCAATCAAATTAAGCAAGCCTGGGGAACTTCGTGAGGAATATGAAAGCTTGAGAAAGCTGAGAGAAGAAAAGTTACAAGAGGAAAAACCCTCTGAAGATCAAATCCACAAGCTGTTACCAGA 4 0.736005639747234 0.500250646698442 0.7907805356508281 N Y 3.5203902459336605 3.53039946453785 3.5203902459336605 0 0.0 0.0 Y 0.0 N N 357 2130 ENSG00000077514 ENSG00000166439 + - 11 11 74380162 74553458 utr3p coding POLD3 RNF169 74204896 74459913 + + 0.0 74351886 74500671 + - N - - N SA469 1 0.0 1.0 1 0 1 Y N 0.0 0.0 5 0.88518317038048 0.944195381739178 0.944195381739178 0.88518317038048 4 - - 0.96899676991036 HCT116-unstranded 5.0 359682 TGGAGAGATTGAGGAGTGCACCATCCACTTCCGTGTCCAAGGGGACAACTACGGCTTCGTCACTTATCGCTATGCTGAGGAGGCATTTGCAGCCATTGAGAGTGGCCACAAGCTGCGGCAGGCAGATGAGCAGCCCTTTGATCTCTGCTTTGGGGGCCGAAGGCAGTTCTGCAAGAGGAGCTATTCTGATCTTGA|AGGGAGTTAAGCCCCAAGCCAAGGCAGCCAAAGCTCCTCCTAAGAAGGCCAAGAGCTCTGATTCTGATTCTGACTCAAGCTCCGAGGAT 7 0.414086938328706 0.805811519974611 0.785216120725604 Y Y 3.70889084821189 3.11547640886856 3.11547640886856 0 0.0 0.0 Y 0.0 N Y 25313 41710 ENSG00000148840 ENSG00000166197 + - 10 10 103910082 103923627 coding coding PPRC1 NOLC1 103892787 103911933 + + 0.0 103909086 103917806 + - N - - N SA469 1 0.0 1.0 1 0 1 N Y 0.0 0.0 6 1.0327136987772298 1.05484327803674 1.05484327803674 1.0327136987772298 4 - - 0.943032734995739 HCT116-unstranded 5.0 211484 GCCCGCGCACGGCGCTGGAGTACTGCAAGCTCATCCTGAGTCTCGAGCCGGATGAGGACCCCCTCTGCATGCTGCTGCTCATCGACCACCTGGCCTTGCGGGCCCGGAACTACGAGTACCTGATCCGCCTCTTCCAGGAGTGGGAGGCTC|AGACGCAGTCTTCAGCAAGGAAGTGCTGGGAACGCCCTGGAGTGAACCCAGGAAGATGCCTGCAGTGGGTGCCAGGGCCCCTCTCCACCGTCCCTGCTGGGCTTCGGGGCCACGCCCGACTGCTGTGAACGGCCTGCGGAGCACCACGTGCGACGGCTGGAG 4 0.947456160242867 0.728834169045181 0.626899623107698 Y Y 3.69462555934877 3.57489529770476 3.57489529770476 0 0.973418530351438 0.0 Y 0.0 N N 11996 2879 ENSG00000141002 ENSG00000258839 + - 16 16 89977792 89987385 coding utr5p TCF25 MC1R 89940000 89978527 + + 0.0 89967046 89984287 + - N - - N SA469 1 0.0 1.0 1 0 2 N Y 0.0 0.0 7 0.988454540258202 1.04009022519706 1.04009022519706 0.988454540258202 4 - - 0.98975341396599 HCT116-unstranded 5.0 210627 GAACCTGTCCCAGCTCCCTAATTTTGCCTTCTCTGTTCCACTGGCGTATTTCCTGCTGAGCCAGCAGACAGACCTCCCTGAGTGTGAGCAGAGCTCTGCCAGGCAGAAGGCCTCTCTCCTGATACAGCAGGCGCTCACCATGTTCCCTGGAG|ATGCCTTGAGTCCACCCAAATAGGGGATGTGATGTTTGGAGCTGCAGCAGCCGCCCTACGGTTGGGAGTCAGAGAAGAGCCGGTGTTCCAGGGACAATGCAGCAGAGGCTGAGCCCAGGCCTGCTGTCCTGAGAGGTGGCTGGATCACTGACACTTTGGCAGTGGTGCTGGGGTTTATGTCATGACCTGCAGCTGAGCCTAC 10 0.614185261271079 0.6304505449991701 0.7139086850664692 Y Y 3.65657572715995 3.41576000382978 3.41576000382978 0 0.9934395848776868 0.0 Y 0.0 N Y 11996 2879 ENSG00000141002 ENSG00000258839 + - 16 16 89977792 89987385 coding intron TCF25 MC1R 89940000 89978527 + + 0.0 89967202 89979640 + - N - - N SA469 1 0.0 1.0 1 0 2 N Y 0.0 0.0 8 1.09172591013592 1.35728086125007 1.35728086125007 1.09172591013592 4 - - 0.98975341396599 HCT116-unstranded 5.0 211754 AAAGGCTGGATTGATCTCCAAAGACTGGATGGTATGGGCTGTCTGGAGTTTGATGAGGAGCGAGCCCAGCAGGAGGATGCATTAGCACAACAGGCCTTTGAAGAGGCTCGGAGAAGGACACGCGAATTTGAAGATAGAGACAGGTCTCATCGGGAGGAAATGGAGGTGAGAGTTTCACAGCTGCTGGCAGTAACTGG|AATGCCTCTGGCTCAGGCAGTAGCCATTCTTCAGAAGCACTGTCGCATCATCAAAAACGTCCAGGTTCTCTACAGTGAACAGTCTCCTCTAAGCCATGACCTCATTCTTAACCTGACTCAGGACGGGATCAAACTAATGTTTGATGCTTTCAATCA 6 0.931679949197404 0.588874282004456 0.475983976405693 Y Y 3.5016965035439 3.674404233649161 3.5016965035439 0 0.0 0.0 Y 0.0 N Y 3950 2752 ENSG00000067955 ENSG00000125149 + - 16 16 67134961 67182442 coding coding CBFB C16orf70 67063019 67143861 + + 0.0 67116242 67154015 + - N - - N SA469 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 14 1.09910243655576 1.00320759309788 1.09910243655576 1.00320759309788 4 - - 0.9805975981117968 HCT116-unstranded 5.0 225762 TAGATAGTGGTCGAATAGGAGCAGATGAAGAAATTGATGATTTCAAAGGAAGATCAGCTGAGGAAGTAGAAGAAATAAAGGCAGAAAAAGAGGCTAAAACTCAGGCTATACTTTTGGAGATG|CTGAACGTGACTGTGGCGTGCAGGAAGTGGAGCATTGGCATGAAGTGGCTCCTAGTGGCTGCTTGGCGCACGCCAGCTGCCCTCCTCTGACTCCAGTGGCACCTGGGGGCCTGGCCTCACTGACGGGAGAACATTGGCGTGAAGGCTGCTGGCGACTGGGCCAGCATTCATTGT 4 0.342654925597008 0.280787644675933 0.642112425699364 N Y 3.329991337985 3.51203659171532 3.329991337985 0 0.950985262460672 0.0 Y 0.0 N Y 569 241 ENSG00000131013 ENSG00000178199 + - 6 6 149867174 149806197 coding utr5p PPIL4 ZC3H12D 149825869 149768794 - - 0.0 149854594 149806148 - + N - - N SA469 1 0.0 1.0 1 0 1 N N 0.0 0.0 9 0.656510851365522 1.00320759309788 1.00320759309788 0.656510851365522 4 - - 0.946659365443613 HCT116-unstranded 5.0 381762 CAACTTCTCCGTAGCAGAATGCCAGCTGATGAAGACCGAGAGGCCGCGACCCAACACCTTTGTCATACGCTGCCTGCAGTGGACCACAGTCATCGAGAGGACCTTCCACGTGGATTCTCCAGACGAGAG|GTCTTGAACCCAGGACCCTCAAGCCCGTGCTCTCTACGACTTCCAGACACAAGTCAATGGCCCCATTTTACACACCAGGAAACTGAGGTCCGGAACTTGGGGCCTTTCCAGGGCAGGGAGTAAAGAGCCCGGATCCAAGACTCCTTCACCTCCCCCCGCATCCCCCATCTGCAGCCCG 3 0.8342251450196541 0.878134776253078 0.967705465224894 Y Y 3.4933428493255603 3.5680785743660803 3.4933428493255603 1 0.0 0.0 Y 0.0 N N 8024 406 ENSG00000105221 ENSG00000105219 + - 19 19 40791443 40732597 coding intron AKT2 CNTD2 40736224 40728115 - - 0.0 40761065 40729627 - + N - 4.05971566188477 N SA469 1 1.0 1.0 1 0 2 N Y 0.0 1.0 5 0.627004745686173 0.63438127210601 0.63438127210601 0.627004745686173 4 - 2.4 0.9829225717674 HCT116-unstranded 5.0 2753 GGCAGGGGAACCGGAAGTGGAGGAGCTGCTGCTGGTGCTGGGGCCGGAGGAGGGACGCGCCGGAGCGGGACCGACGGGACCGAGCGAGCGACCGACGCGCCACCCGCCGACGCCTCAGCCGCTTGGGGCCCGCACGGACCCTCTACTTCAGT|TTCAGCGCAAGTACCTCTACCAAAAAGTGGAACGAACCCTGTGTCAGCCCCCCACCAAGAATGAGTCGGAGATTCAGTTCTTCTACGTGGATGTGTCCACCCTGTCACCAGTCAACACCACATACCAGCTCCGGGTCAGCCGCATGGACGATTTTGTGCTCAGGTC 4 1.0 0.7726599678618571 0.766761128667928 Y Y 3.45872825368684 3.58064844605001 3.45872825368684 0 0.0 0.0 Y 0.0 N Y 10412 3092 ENSG00000168092 ENSG00000149577 + - 11 11 117047610 117068160 utr5p coding PAFAH1B2 SIDT2 117014983 117049449 + + 0.0 117015134 117052523 + - N - 0.763060185421232 N SA469 1 0.0 1.0 1 0 1 N Y 0.0 0.0 21 1.06959633087641 1.23187991211283 1.23187991211283 1.06959633087641 4 - 7.57142857142857 0.983587814839638 HCT116-unstranded 5.0 231830 ACATGGGCCTGCCCCAGAACCGTATCATTTTTTCACCTGTTGCTCCTAAAGAGGAACACGTCAGGAGAGGCCAGCTGGCTGATGTCTGCTTGGACACTCCACTCTGTAATGGGCACACCACAGGGATGGATGTCCTCTGGGCAGGGACCCCCATGGTGACTATGCCAG|ATGAGAGTCCGGAGTGTTGTCATGTGAAGCCTGCCATCCAGGAACCTCCAATAGTTATTAGTGATGATGACAATGACGATGACAACGGTAATGATTTGGAAGTTCCCGACGACAACAGTGATGATTCAGAAGCTCC 10 0.975968602080442 0.527369090299313 0.427964589462749 Y Y 3.37448717115191 3.55760534744548 3.37448717115191 0 0.0 0.0 Y 0.04725168756027 N Y 2847 727 ENSG00000147162 ENSG00000147174 + - X X 70795747 70833433 coding coding OGT ACRC 70752933 70798261 + + 0.0 70787602 70823438 + - N 0.980374133976077 0.0791864910222712 N SA469 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 10 1.15811464791446 0.944195381739178 1.15811464791446 0.944195381739178 4 13.8 1.6 0.990263580524085 HCT116-unstranded 5.0 274794 ATTCAATGCCACAGACCTGAAGGATCTCTCTTCTCATCAATTGAATGAGTTTTTAGCACAGACGCTCCAGAGGATGGCTGCGGCTCTGCATTCAATCCAAGTGGGAGGACGCAATTCCTTTGGCGCTAAAGATGGCAACTGAACAAGGAAGAATGAAGTTTACCCGGCCCTTATTCAA|CTGACCACACCCCGGTAGCCACTCCTGCATAAAGCTCTCCCCTCCTGTGACCAGCTGAGGACCTCAGGCTGCAGCGGAGCCATGCCCAGATACACGGTGCACGTACGTGGGGAATGGCTGGCAGTGCCCTGCCAGGACG 15 1.0 0.98137358052122 0.6212528323363511 Y Y 3.62192127872787 3.5110433747387795 3.5110433747387795 5 0.0 0.0 Y 0.0 N Y 9063 208 ENSG00000111144 ENSG00000084110 + - 12 12 96437298 96390143 coding utr5p LTA4H HAL 96394606 96366440 - - 0.0 96396738 96389769 - + N - 2.43944203497145 N SA469 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 6 1.17286770075414 0.8999362232201541 1.17286770075414 0.8999362232201541 4 - 0.5 0.973970789086532 HCT116-unstranded 5.0 78975 CGCCAGCCGAGGCAGCTCGAGCCCAGTCCGCGGCCCCAGCAGCAGCGCCGAGAGCAGCCCCAGTAGCAGCGCCATGGCCGGGTGGAACGCCTACATCGACAACCTCATGGCGGACGGGACCTGTCAGGACGCGGCCATCGTGGGCTACAAGGACTCGCCCTCCGTCTGGGCCGCCGTCCCCGGGAAAACGTTCGTCAACATCAC|GGCTGTCGGCTGGCCTGCTGCGTCAGGCCACCTACACCACTACCCGCCTTGGCATCTATACCGTGCTGTTTGAGCGCCTGACTGGGGCTGATGGTACTCCCCCTGGCTTTCTGCTGAAGGCTGTGATTGGCATGACCGCAGGTGCCACTGGTGCCTTT 10 0.972829052602844 0.924846969814813 0.5878043132856221 Y Y 3.35257042827311 3.41054541171446 3.35257042827311 2 0.993688321651498 0.0 Y 0.0 N Y 124097 2815 ENSG00000108518 ENSG00000108528 + - 17 17 4852356 4843546 coding coding PFN1 SLC25A11 4848947 4840425 - - 0.0 4851558 4842270 - + N - - N SA469 2 0.0 1.6 1 6 1 N Y 0.0 0.0 10 1.541694021746 1.07697285729625 1.541694021746 1.07697285729625 4 - - 0.912013769322596 HCT116-unstranded 5.0 239006 GCTCTGGTCGGCTGTGTAGACTGTTGGGTAGGCTGCGTGCTAGCTTCGGCGCGGATCCCTGGGCGTCCGTACGTCGGAGTCCTTCGTCCTCCAGGGTCCCTGTTCTTTGCGCCAGCGGGAACCACTATCTCTGCACTCCTGGGGTTTTGTTACATGGCTGCTTTCCTCAAAATGAGT|GTAATTGAGAGGAGAATTCTATATTTGGACAATCGCCGTGATTAAACGAGTGTATGAAAGGCGTCTGAAGCTAGGGGGCGCTAGATAAACACTGATTTCCCCTTTAGGGAAAAAGAATGCAGGCTTTTTGTTTACATAGAGTTGGCAGGCATGCGTTA 11 1.0 0.851480525902005 0.807152590717803 Y Y 3.48383749183115 3.73978373992499 3.48383749183115 0 0.0 0.0 Y 0.00928646775165753 N N 4156 4034 ENSG00000174173 ENSG00000081154 + - 3 3 101285290 101313281 coding upstream TRMT10C PCNP 101280706 101292939 + + 0.0 101283649 101292516 + - N - - N SA469 1 0.375 1.0 1 0 1 N Y 0.0 0.375 11 1.29826864989137 1.12123201581527 1.29826864989137 1.12123201581527 4 - - 0.979264692013742 HCT116-unstranded 5.0 381515 GGCGGCGCTGCCGTAAATCAGGCGGTCTGCTTGCCGCATCACGCAAGATGGCGGCCGCGGCGGTGAACGGGGCGGCAGGCTTCTCGAGCTCCGGGCCCGCGGCAACCTCGGGCGCTGTTCTGCAGGCCGCGACCGGCATGTACGAGCAACTCAAGGGCGAGTGGAACCGTAAAAGCCCCAATCTTAGCAAGTGCGGGGAAGAGCTGGGTCGACTCAAG|ACAACCTTGGAGTGTACACTGAAGCCAGGCTTGGTTTACAACAAGGTGAATCCCATCTTTCACCACTGGAGCCTGGGTGACTGCAAGTTTGGACTGACGTTTCAGAGCCCTGCAGAGGCTGATGAGTTCCAGAAGAGCCTGC 16 0.951002247515125 0.914680550484947 0.467520133644355 N Y 3.62617734898681 3.57592836747465 3.57592836747465 0 0.992977254106356 0.0 Y 0.0 N Y 12956 100 ENSG00000099341 ENSG00000188766 + - 19 19 38874464 38886881 coding coding PSMD8 SPRED3 38865176 38879061 + + 0.0 38865601 38882586 + - N - - N SA469 1 0.0 1.0 1 0 2 Y N 0.0 0.0 8 1.5490705481658402 1.0327136987772298 1.5490705481658402 1.0327136987772298 4 - - 0.98975341396599 HCT116-unstranded 5.0 381561 CTGCCAAGGACATACAGACCAATGTCTACATCAAGCACCCAGTGTCCCTGGAGCAATACCTGATGGAGGGCAGCTACAACAAAGTGTTCCTGGCCAAGGGTAACATCCCCGCCGAGAGCTACACCTTCTTCATTGACATCCTGCTCGACACTATCAG|ACAACCTTGGAGTGTACACTGAAGCCAGGCTTGGTTTACAACAAGGTGAATCCCATCTTTCACCACTGGAGCCTGGGTGACTGCAAGTTTGGACTGACGTTTCAGAGCCCTGCAGAGGCTGATGAGTTCCAGAAGAGCCTGCTGGCTGCGCTGGCC 7 0.508128295445545 0.776678762121187 0.7175956249243001 N Y 3.4944157718888 3.57592836747465 3.4944157718888 1 0.993610158419076 0.0 Y 0.0 N Y 12956 100 ENSG00000099341 ENSG00000188766 + - 19 19 38874464 38886881 coding coding PSMD8 SPRED3 38865176 38879061 + + 0.0 38871639 38882586 + - N - - N SA469 2 0.0 1.33333333333333 1 3 2 Y N 0.0 0.0 9 1.45317570470795 1.00320759309788 1.45317570470795 1.00320759309788 4 - - 0.953593013233197 HCT116-unstranded 5.0 359581 GAAAGACGACATTCATCAGTGAGTATGCCCTGGATTTGTGTTCCCAGGGGGTGAACACACTGTGGGGTAGCTTCGAGATCAGCAATGTGAGACTAGCCCGGGTCATGCTGACACAGTTTGCCGAGGGGCGGCTGGAAGATCAACTGGACAAATATGATCACTGGGCTGACCGCTTTGAGGACCTGCCCCTCTATTTCATGACTTTCCATGGACAGCAAAGCATC|AGGTCGCCTGCGAGGCCGCTGGCCAGGCCTGAGCCTCTGCCACCATGGCCATTGTGCAGACTCTGCCAGTGCCACTGGAGCCTGCTCCTGAAGCTGCCACTGCCCCACAAGCTCCAGTCATGGGTAGTGTGAGCAGCCTTATCTCAGGCCGGCCCTGTCCCGGGGGGCCAGCTCCTCCCCGCCACCACGGCCCTCCT 14 0.865695468101927 0.590351450679458 0.192581186749666 Y Y 3.41319935075004 3.2347825149895 3.2347825149895 0 0.0 0.0 Y 0.0 N Y 13766 5246 ENSG00000107815 ENSG00000107816 + - 10 10 102754158 102767593 coding utr5p C10orf2 LZTS2 102747124 102756375 + + 0.0 102749641 102762254 + - N - - N SA469 1 0.0 1.0 1 0 1 N Y 0.0 0.0 12 1.67447149730307 1.43104612544844 1.67447149730307 1.43104612544844 4 - - 0.950003646985542 HCT116-unstranded 5.0 336215 CCGGCGCGGGGACGCGGGTTTCTGCCTCAGGCCCTGCCCTGCTCTACTCTGCGCTCTCTGCCCGCGCCGCCGCCGCCTCAGCCTCGGCCCTGCGCTGCGCGCCCGGCCCGTGCTGCCATGGCCTGCCGCCCGCGAAGCCCGCCGAGGCATCAGAGCCGCTGCGACGGTGACGCCAG|GCACAAATCCTGAAGAGCCCGTGGGCGTGGACTGCTCATCTGTAAAGAAAGTGGAGACATGACCTTGAGATTTGGCTGACCCAGCAATGCTGGGGCCTTCGCAAGTCTGATGTTCCAGGACTCCAGTGCCTGTTGGTGTGGACGGAGGACA 26 0.987980596535279 0.8547258188581501 0.686322372421093 Y Y 3.35715736809928 3.57063922744582 3.35715736809928 1 0.0 0.0 Y 0.0 N Y 4259 616 ENSG00000163950 ENSG00000174137 + - 4 4 1714282 1686029 coding utr5p SLBP FAM53A 1694527 1619642 - - 0.0 1713857 1670632 - + N - - N SA469 1 0.5606936416184971 1.0 1 0 1 N Y 0.5606936416184971 0.0 21 1.27613907063186 1.1507381214946202 1.27613907063186 1.1507381214946202 4 - - 0.983587814839638 HCT116-unstranded 5.0 253250 GAGCACAGAGAAATGCTGGTGAAACTGGCCAAACAGAACACCAACAAGGCCAAAGACTCTTTACGGAAGGTTCGCACCAACTCAATGAACAAGCTGAAGAAATCCAAGGATACAGTCTCAGAGGACACCATTAGGCTAATAGAGAAACAG|ACCTTATCTTGGGACAAGAGAAGTCTGCTCACTTCTGCTGTCTGCAGCATGCACTGGTTACTGGATTCTCCAGAGAAGCCACCCGTCAGAAACCACAGCTCATGCTAGAACGAGGCTCTTTCTGGAGTCTGGGAGACATT 3 0.475714747728805 0.283114786902192 0.5877547620179671 Y Y 3.4765169073827 3.5942115347104706 3.4765169073827 0 0.0 0.0 Y 0.0 N N 3071 1684 ENSG00000148187 ENSG00000095303 + - 9 9 125085743 125157982 coding upstream MRRF PTGS1 125026882 125132824 + + 0.0 125075665 125127011 + - N 0.511936346711427 - N SA469 2 0.0 1.2 1 1 3 N Y 0.0 0.0 5 0.767158747663082 0.9589484345788531 0.9589484345788531 0.767158747663082 4 105 - 0.921927398884765 HCT116-unstranded 5.0 76166 CACCAGGCTCTCATCTGGGACATCCAGCAAATGCCCCGAGCCATTGAGGACCCTATCCTGGCCTACACAGCTGAAGGAGAGATCAACAATGTGCAGTGGGCATCAACTCAGCCCGACTGGATCGCCATCTGCTACAACAACTGCCTGGAGATACTCAGAGTGTAGTGTTGGTGGCGCTGTGCCCACGAGGCAGGGGCTTTTGTATTTCCTGCCTCTGCCCCACCCCCAAA|AAGGAGGCCCCAACCCTGAGCACAACAGCAACCTGGCCAATATCTTAGAGGTGTGTCGCAGCAAACATATGCCCAAGTCAACGATTGAGACAGCACTGAAAATGGAGAAATCCAAGGACACTTATTTGCTGTATGAGG 7 0.982858787358216 0.974859613252427 0.516020782161199 Y Y 3.1436806664259302 3.13015227288562 3.13015227288562 0 0.0 0.0 Y 0.0 N Y 8979 1837 ENSG00000136485 ENSG00000136463 + - 17 17 61671639 61685725 utr3p coding DCAF7 TACO1 61627822 61678231 + + 0.0 61666599 61681894 + - N - - N SA469 1 0.0 1.0 1 0 2 N Y 0.0 0.0 5 1.33515128199056 0.9810780138383648 1.33515128199056 0.9810780138383648 4 - - 0.9855187992232192 HCT116-unstranded 5.0 76165 CCTGGCCACCATGGCCATGGATGGAATGGAGGTGGTGATTCTAGATGTCCGGGTTCCCTGCACACCTGTCGCCAGGTTAAACAACCATCGAGCATGTGTCAATGGCATTGCTTGGGCCCCACATTCATCCTGCCACATCTGCACTGC|AGAAGGAGGCCCCAACCCTGAGCACAACAGCAACCTGGCCAATATCTTAGAGGTGTGTCGCAGCAAACATATGCCCAAGTCAACGATTGAGACAGCACTGAAAATGGAGAAATCCAAGGACACTTATTTGCTGTATGAGGGTCGAGGCCCTGGTGGCTCTTCTCTGCTCATCGAGGCATTATCTAACAGTAGCCACAAG 5 0.5949617022835839 0.24263466100364106 0.561650534186106 Y Y 3.12336605477048 3.15951758128887 3.12336605477048 0 0.0 0.0 Y 0.0 N Y 8979 1837 ENSG00000136485 ENSG00000136463 + - 17 17 61671639 61685725 coding coding DCAF7 TACO1 61627822 61678231 + + 0.0 61662690 61681894 + - N - - N SA469 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 6 0.8409240118614559 1.1286085422351102 1.1286085422351102 0.8409240118614559 4 - - 0.961762334335644 HCT116-unstranded 5.0 129562 GATGGAGTTGAATGAGCACAGCCTAGTGATCGATACACTGAAGGAGGTAGATGAAACTCGTAAGTGCTACCGCATGGTTGGAGGAGTGCTGGTGGAGCGAACTGTCAAAGAGGTGCTGCCCGCTTTGGAGAACAACAAGGAGCAG|GCCGGTGCCCCGCGGGTGAGCTGGAGACCTCAGACGTGGTAACTGTGGTGCTGGGCCAGGACGCAAAACTGCCCTGCTTCTACCGAGGGGACTCCGGCGAGCAAGTGGGGCAAGTGGCATGGGCTCGGGTGGACGCGGGCGAAGGCGCCCAGGAACTAGCGCTACTGCACTCCAAATACGGGCTTCATGT 26 1.0 0.406521341630552 0.496477333403367 N Y 3.31422897103557 3.3539742204035803 3.31422897103557 0 0.0 0.0 Y 0.0 N Y 3225 474 ENSG00000143256 ENSG00000143217 + - 1 1 161087901 161059389 coding coding PFDN2 PVRL4 161070346 161040785 - - 0.0 161071838 161049739 - + N - - N SA469 1 0.0 1.0 1 0 1 N N 0.0 0.0 20 1.1802442271739702 1.27613907063186 1.27613907063186 1.1802442271739702 4 - - 0.976604993145557 HCT116-unstranded 5.0 129801 TAGGCACCAAGTGGAACTCTGAGGTGACGGCAGCAGAGCGGGAGTGCTTGAAGGAACGGCTGGACGTTGTGCCTTTGACCTCCGTGTCCCAGGTCACGCTGGGGGCTGGGCTGCCCTCAGCTGTGCAGGAGGCTGCCAGGGTCAGGCCCTGGCCCTCTTCTAGTGCTGGACCAGGATTCAGTGAGGGCAGGGGAGGCAC|TGCTCTGCGGACACCGCCCCCTTCCCCGCGCCGCTCCCGCTGCTCTTGCCGGCGCGACCGCTGTTCTCCGCCATCTTCGCCGCCTGCTGGGTTTCCGGCCGGCGCAGCTCAGCCCCCGCCTTGCGTCACG 3 1.0 0.934196928723645 0.168273849865579 N Y 3.41103992525442 2.90824221140723 2.90824221140723 0 0.0 0.0 Y 0.0 N Y 474 3225 ENSG00000143217 ENSG00000143256 - + 1 1 161059389 161087901 coding coding PVRL4 PFDN2 161040785 161070346 - - 0.0 161047533 161087742 + - N - 1.17646932388418 N SA469 1 0.0 1.0 1 0 3 N N 0.0 0.0 6 0.7892883269225942 0.501603796548938 0.7892883269225942 0.501603796548938 4 - 260.833333333333 0.9759409545740528 HCT116-unstranded 5.0 129804 GAGGTGACGGCAGCAGAGCGGGAGTGCTTGAAGGAACGGCTGGACGTTGTGCCTTTGACCTCCGTGTCCCAGGTCACGCTGGGGGCTGGGCTGCCCTCAGCTGTGCAGGAGGCTGCCAGGGTCAGGCCCTGGCCCTCTTCTAGTGCTGGACCAGGATTCAGTGAGGGCAGGGGAGGCAC|TGCTCCTTGTTGTTCTCCAAAGCGGGCAGCACCTCTTTGACAGTTCGCTCCACCAGCACTCCTCCAACCATGCGGTAGCACTTACGAGTTTCATCTACCTCCTTCAGTGTATCGATCACTAGGCTGGGATAGGAGA 5 1.0 0.262968193620558 0.602024999598089 N Y 3.41103992525442 3.41423242051993 3.41103992525442 0 0.0 0.0 Y 0.0 N Y 474 3225 ENSG00000143217 ENSG00000143256 - + 1 1 161059389 161087901 coding coding PVRL4 PFDN2 161040785 161070346 - - 0.0 161047533 161071838 + - N - 0.605563717578507 N SA469 1 0.0 1.0 1 0 3 Y N 0.0 0.0 6 0.8187944326019441 0.922065802479666 0.922065802479666 0.8187944326019441 4 - 253.5 0.982114440821365 HCT116-unstranded 5.0 132117 ACCACGTGGTTCAGGTGCTCCAAGTACTGGGCGGGGATCGGCTTGTTGTAGTCGCCGTTCTCCTGGAAGCCGTTGTACTGCTCGCAGTGGGGACAGTCCCAGCAGTTGCGGTTCCCATAGGGCACCAGCGTATCCTGGTTGCAGAACCAGCAGTTGACCATCGTGTGCGTTGGCTTCAT|CCGTGTGGATAAGCAATGCAGGAGGCACAGCCCTTAGAAAGAGCAGCAGCTGCCATAAGTCCAAAAAAACTTGTGGAATTTTTCTCAGTCCCATTTGCAGAAGAGGCTAATGGAGCTTCTTTCAGATACTTCTTTAAACTTTCATAAATAGCAA 17 1.0 0.9120078071032808 0.441094142991894 Y Y 3.72824693801095 3.61360747730288 3.61360747730288 5 0.0 0.00299401197604787 Y 0.00299401197604787 N Y 9848 2010 ENSG00000188807 ENSG00000171612 - + 1 1 9674935 9642831 coding intron TMEM201 SLC25A33 9648932 9599541 + + 0.0 9655948 9640292 - + N - 1.54651453446423 N SA469 2 0.0 2.0 2 14 2 N Y 0.0 0.0 14 1.1507381214946202 0.863053591120968 1.1507381214946202 0.863053591120968 4 - 26.2857142857143 0.904160615347461 HCT116-unstranded 5.0 130483 TGTGCTCTTGACCTGCTCCGCCCCCTTCCCTGGAGGGAGCACCCTCTGGACAGACAGAACCATCTGAGGCTCACCTTTGGGTTTTGTGACAAGAAGGGGACGTGTTGGGTTTTTCTTCCTTACACTATATTTTGGCTGCACACATGTCTTTAACCCAGGAGCCCAGGGGTAGACAAAGGAGGACTAAG|CCTCCTTTGGAAGAAGGACATTGAGGCCCAGAGAGAGAACAGAACGTCCAGCCACACAGCAAATCCGTGATGAAGTTGGGACTGGAGTATGGGTCTCCTGAGTCTCAGCCCAGGACTCTATCCCTCTTCCCGAGTCCTCGGAGT 10 0.982602696526463 0.3958871210693161 0.4839076184447879 Y Y 3.06212821804673 3.27291628556435 3.06212821804673 0 0.993076409743076 0.0 Y 0.0 N N 6006 4268 ENSG00000025800 ENSG00000084652 + - 1 1 32642169 32663886 utr3p upstream KPNA6 TXLNA 32573639 32645287 + + 0.0 32636807 32644809 + - N - - N SA469 1 0.8714285714285709 1.0 1 0 1 N Y 0.0 0.8714285714285709 7 1.3203982291508798 0.9589484345788531 1.3203982291508798 0.9589484345788531 4 - - 0.948418914906976 HCT116-unstranded 5.0 336121 GCCCCGCGCTCACCCTCCTGCTCCTCCTCATGGCCGCTGTTGTCAGGTGCCAGGAGCAGGCCCAGACCACCGACTGGAGAGCCACCCTGAAGACCATCCGGAACGGCGTTCATAAGATAGACACGTACCTGAACGCCGCCTTGGACCTCCTGGGAGGCGAGGACGGTCTCTGCCAGTATAAATGCAGTGAC|GTGTCAACTGTTAGCCACGCAGATGCCGATTGCTTTGTGTGTGTCTTCCTGAGCCATGGCGAAGGCAATCACATTTATGCATATGATGCTAAAATCGAAATTCAGACATTAACTGGCTTGTTCAAAGGAGACAAGTGTCACAGCCTGGTTGGAAAACCCAAGATATTTATCATTC 7 0.8345002061599479 0.6096491152096739 0.620936498902881 Y Y 3.67423639977982 3.64656650855576 3.64656650855576 4 0.0 0.0 Y 0.0 N Y 1524 310 ENSG00000123739 ENSG00000138794 + - 4 4 110651233 110624739 coding intron PLA2G12A CASP6 110631145 110609785 - - 0.0 110650758 110615856 - + N - - N SA469 2 0.0 1.8333333333333304 1 5 2 Y Y 0.0 0.0 6 1.25400949137235 0.929442328899504 1.25400949137235 0.929442328899504 4 - - 0.921615675220782 HCT116-unstranded 5.0 336120 ACAAAGTGTTGCAACCAACACGACAGGTGCTATGAGACCTGTGGCAAAAGCAAGAATGACTGTGATGAAGAATTCCAGTATTGCCTCTCCAAGATCTGCCGAGATGTACAGAAAACACTAGGACTAACTCAGCATGTTCAG|GTGTCAACTGTTAGCCACGCAGATGCCGATTGCTTTGTGTGTGTCTTCCTGAGCCATGGCGAAGGCAATCACATTTATGCATATGATGCTAAAATCGAAATTCAGACATTAACTGGCTTGTTCAAAGGAGACAAGTGTCACAGCCTGGTTGGAAAACC 7 0.7017776345527571 0.89469108939578 0.348907007642639 Y Y 3.5640208432000287 3.64656650855576 3.5640208432000287 0 0.0 0.0 Y 0.0 N Y 1524 310 ENSG00000123739 ENSG00000138794 + - 4 4 110651233 110624739 coding intron PLA2G12A CASP6 110631145 110609785 - - 0.0 110638704 110615856 - + N - - N SA469 2 0.0 1.6666666666666698 1 8 2 Y Y 0.0 0.0 12 1.00320759309788 1.02533717235739 1.02533717235739 1.00320759309788 4 - - 0.9055755877981428 HCT116-unstranded 5.0 131827 TTCTGGCAATGTGGATATTCCTAGGGAGGCTGTAGGAGCCAGACCTGAGGCCTAGGCCCTGGGGCTCAGGAGGGTGGGATGAGCTGGACTCAGTTACTGTCCTTGGCGTTCGTCCTTGCTGAGTGATGGTCTCCTCTGGACCT|CCAGATTGGATGGGCAAGTCTTCCAGAATGGTATCCCCATTGCTGAGATCCAGGCACTCGGGAGGGTATCCGACGAGGATTCGCTGACCGCCGGGGGCGATCCCGGTGATGGCGGCAATTTGGCCCTGGAGTTCCCGCACCCGGGTCCGGCTGGACAGCCCCTGCAAAACATGG 5 0.736005639747234 0.98044217373312 0.6667603215671899 N Y 3.4676111165652994 3.5429693362217702 3.4676111165652994 2 0.0 0.0 Y 0.0 N Y 1020 6305 ENSG00000182795 ENSG00000180667 - + 1 1 207206101 207226325 coding intron C1orf116 YOD1 207191866 207217194 - - 0.0 207196825 207224033 + - N - 2.37222769496152 N SA469 1 0.0 1.0 1 0 1 N N 0.0 0.0 5 0.700770009884546 0.944195381739178 0.944195381739178 0.700770009884546 4 - 50 0.9820059873632628 HCT116-unstranded 5.0 380414 CTGTTGGGGCCGAAGTCACCCTGGCCGGTGCCAGCGGCCAGCCCATTCCGCAGGAACCGAAGTTGCAGCTCCGGAGGGTAGAAGGAGAAGGCGCTGCAGGTAAGCACGGAAAAGCCAGGGCTGCTGGGTCGGGCCTTCAGGCGCATGGAGGGGGGCT|CTGAAGCAGGGGGACAGGTGTACAGACATGTTCTTGTGGCGCTTCTCGAAGCGGTTGTACTTGCGGATGTAGTGCAGATAGTCTCGGCGGATGACAATGGTCCTCTGCATCTTCATCTTGGTCACCACGCCTAGGAGCGGGGGCCGATC 9 0.886235768626295 0.979470868167788 0.7555318179256091 N Y 3.06253879320067 3.49847350305486 3.06253879320067 0 0.993310451872418 0.0 Y 0.0 N Y 148 48296 ENSG00000104870 ENSG00000142534 - + 19 19 50029685 50002944 coding coding FCGRT RPS11 50015536 49999634 + + 0.0 50027764 50001303 - + N - 1.46323069063008 N SA469 2 0.0 1.42857142857143 1 3 2 N N 0.0 0.0 7 0.7228995891440579 0.922065802479666 0.922065802479666 0.7228995891440579 4 - 3122.57142857143 0.934940426454107 HCT116-unstranded 5.0 210847 CAGGTGAGTGCCAGCTGGGGCTCGAGGACTTTCTCCTCTCCGCTCCCTGTTCTGGGAGCAGGGTCAGGGGCTTCGCGGAGAAGGCGGAGGAGAGCTGGAAGGTGCTGCTTTCCTTGTGCTGCTGGCGCGCCACTGCACTTCAGCCTGGGAGACAGAGCGAGACTCCGT|AGTTCTAGAGGTCAGGAGTCCAAAATGGTTTTCACCAGGCTGAAGTCTTGTCAGTGCGGCTTTGTTTCTCCACGGAGGCTCTGGGGCAGAATCCAATGCCTTTTCCAGCTCCTCCAGGGGCCACCTCATCGCCTGGCCCCAGGCCTTCTTGCCATCT 8 1.0 0.6101717781620961 0.19253983294571805 Y Y 3.45823374014688 3.5203902459336605 3.45823374014688 0 0.0 0.0 Y 0.0 N N 2433 6474 ENSG00000183604 ENSG00000169217 - + 16 16 30346695 30366682 upstream utr3p RP11-347C12.2 CD2BP2 30234230 30362087 - - 0.0 30354822 30362123 + - N - 0.129737917940279 N SA469 1 1.0 1.0 1 0 1 N Y 0.443786982248521 1.0 13 1.24663296495251 1.09910243655576 1.24663296495251 1.09910243655576 4 - 3.92307692307692 0.9642468903432472 HCT116-unstranded 5.0 2812 TCAGAAGTAAAATAAGGTGCCAAGTCTGAACTCACAGAAGAGCACAGAATTGTAAGAGTAACATACAGCAGTGTACATAAGGGTCCAAGATCCGGATGCATAGCGCCAGATTACAGAAGCAATCAGGACAGGCTTCCAGAGCAAAACCCAGTCCTTGGTTCA|CTGCGCTCCCAGGTGCCAGGATGCTCTCAGGGTCTTCACTGTGCTCCCAGGTGCCAGGGTGCTCCCATGGTCTTCACTGTGCTCCCAGACACTTGGCTTCATTGTTCTCATTTTGATCCTCATTTGGCATCTCTAAACGCAGGCGGTGCAGGGAATGCACAAAGAAGCGAGG 6 0.734134061142395 0.7651827118686801 0.24424485387588896 N Y 3.44040523365767 3.44040523365767 3.44040523365767 2 0.0 0.0 Y 0.0029850746268657 N N 681 1315 ENSG00000064309 ENSG00000165526 - + 11 11 125933230 126081587 utr5p utr3p CDON RPUSD4 125825691 126071993 - - 0.0 125893432 126073240 + - N - 1.44227914720144 N SA469 1 0.0 1.0 1 0 1 Y N 0.0 0.0 6 1.07697285729625 1.01058411951771 1.07697285729625 1.01058411951771 4 - 19.6666666666667 0.9419041868876808 HCT116-unstranded 5.0 77772 GGAGCTGCAAGGAAAATATGGGAATGTCACCAAAGAAGTTATTGTCTTATATCTGACTCTGTGTAAACAGTGCCACCAGAAGAACCCAGTACCCAAGAGAGGCCTTGCACCAAAGCCCATGACTTTTAAGGACATAGACTCCACATGCCAAGTTGAAATACTTGACATGCAGTCCAGTGCCGATG|ATGCGCTACTTGAATCTAATTATGAAGAGACAAGAGACAAACCCAGATTGAGGGGCATTCAGCAAAATAATTGCCCTGTACTCTTTAAAAAACGGCAATGTTGAGAAAGACAAAGAAAGACTGAGGAGCTATTCCAGTTAAAGTAGGC 15 1.0 0.776818772785084 0.42876318261666296 Y Y 3.6616970333194314 3.53824925764641 3.53824925764641 1 0.0 0.0 Y 0.0 N N 2127 2024 ENSG00000184619 ENSG00000198150 + - 17 17 8280029 8263538 coding utr3p KRBA2 AC135178.1 8271955 8261731 - - 0.0 8273105 8262497 - + N - 0.36324855870701 N SA469 1 1.0 1.0 1 0 2 N Y 0.0 1.0 11 1.32777475557072 1.09910243655576 1.32777475557072 1.09910243655576 4 - 18.2727272727273 0.98975341396599 HCT116-unstranded 5.0 393612 CCTATGAAAATGACAAATGAGCAACGCATCCGGATGACGGTTCCCTGTCTCTGAAAGACCTTTCTCTGGAAGAGGAGTCTGCATTGTAGTGTCTCAAAGACACAATAAACTTCCTATGGTCTGCACTGTTGTGATATTACATTTTT|ATAGATGGCTCCCCAATACCAGAAGTGAGTTCGGCAAAGAGAAGGCCACGGAGAATGACCCCATTTTGGAGAGGGGTTTCCCTCAGGCCTATTGGAGCCTCCTGCCGGGATGATTCTGAGTGTATCACAAGGCTATGCAGAAAAAGACGCTGTTCCTTAAGTGTGGCCCAGGAATGATGTAC 15 0.8370439566322858 0.667051721372418 0.243045041585459 Y Y 3.4048855493250496 3.716171579866991 3.4048855493250496 0 0.9931715035183408 0.0 Y 0.0 N N 8010 199 ENSG00000164405 ENSG00000164406 + - 5 5 132203723 132210738 utr3p coding UQCRQ LEAP2 132202252 132208014 + + 0.0 132203400 132209642 + - N - - N SA469 2 0.0 1.27272727272727 1 3 2 N Y 0.0 0.0 11 0.892559696800317 1.1286085422351102 1.1286085422351102 0.892559696800317 4 - - 0.927838014890162 HCT116-unstranded CGHSA0756 5.0 131984 AAGCCCTCCGTCCAGCAGCTGGGAGTCAGAGAAGACACATCAGAGGGGCCAGTGCCTGACTCTTCCAAGTCCTTTTGCTTGCCCCTCCCTCAGCCCACACCCAAGATGGTCCCAGGCATGGGTCTCTTGGCTCAGGTTGGATCAGCTGACTGGTTACCTCCTCCTCAAGTTCCACGTGCCCACC|TATCAAGCTGAGTTTAGGAACCAGGTACATGTCCTTTTCATTAATGACAAGTGTGGGGGCAGGTGGTGGTGGCCCAGGGTCTGAATTCTCAGTGGTAGGTACCGAAGGGCAGCGTTGTACAAAGTGTGTGTCTGCCAGTCGCACAAATGTGTTTGATACTTCAGCATAGTC 10 0.728803138635395 0.473418871334414 0.396564730468855 Y Y 3.57592836747465 3.7061623612628 3.57592836747465 1 0.9941684736185028 0.0 Y 0.0 N Y 832 1115 ENSG00000186364 ENSG00000186141 - + 1 1 145590461 145611025 intron coding NUDT17 POLR3C 145586115 145592605 - - 0.0 145588635 145608108 + - N 1.63739290669363 0.228000096019597 N SA469 1 0.0 1.0 1 0 1 N Y 0.0 0.0 8 1.24663296495251 1.29826864989137 1.29826864989137 1.24663296495251 4 8.125 18.375 0.957581655229121 HCT116-unstranded 5.0 131518 ATGGGATTTATTGGCAGGCCAACCTTGACAGATTCCACCAACACTTCCGTGACCAAGCCATTGTGAGCGCAGTTGCTAACAGGATGGACCAGACAAGCAGCGAGATTGTGCGAACCATGCTCCGAATGAGTGAGATTACCACTTCCTCTAGTGCTCCCTTCACCCAGCCATTGTCTTCCAATG|AGGTGGGCACGTGGAACTTGAGGAGGAGGTAACCAGTCAGCTGATCCAACCTGAGCCAAGAGACCCATGCCTGGGACCATCTTGGGTGTGGGCTGAGGGAGGGGCAAGCAAAAGGACTTGGAAGAGTCAGGCACTGGCCCCTCTGATGTGTCTTCTCTGACTCCCAGCTGCTGGACGGAGGGCTTCGAGAACTTTGGGAGGAGAGTGGACTACACCT 4 0.464321171325383 0.9539242989487527 0.0672100977093013 Y Y 3.36720643949681 3.52720696927234 3.36720643949681 2 0.994549146260033 0.0 Y 0.0 N Y 1115 832 ENSG00000186141 ENSG00000186364 + - 1 1 145611025 145590461 coding intron POLR3C NUDT17 145592605 145586115 - - 0.0 145601530 145588635 - + N - 1.63588121906297 N SA469 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 6 1.1507381214946202 1.44579917828812 1.44579917828812 1.1507381214946202 4 - 11 0.932950211177745 HCT116-unstranded 5.0 380658 GGGATCCGTTCTGCCCCCAGCTCCTCGGACAGTGCAACCAGAGACCCCTCTACCTCTGTCCCAGCCTCCGGGGCCCACCAGCCCCCCCAGACCACAGAAGGGGAGAAGAGCCCAGAGCCCTTGGGGCTTCCCCAAAGCCAGAG|CGCCCAGATGTCTGCAGGTGGCTGAGCCCCTTCATCCTCTCCTGCTGCGTGTACTTCTGCCTCTGGATTCCCGAGGACCAGCTGTCCTGGTTCGCTGCCCTGGTCAAGTGCCTGCCCGTCCTCTGCCTGGCTGGGTTCCTGTGGGTCATGTCCCCAA 5 0.319903188338604 0.457152205484317 0.654133390091671 Y Y 2.95741403755683 3.4471914517728104 2.95741403755683 0 0.0 0.0 Y 0.0 N Y 10044 585 ENSG00000105063 ENSG00000180089 + - 19 19 55770363 55741647 coding coding PPP6R1 TMEM86B 55741148 55738007 - - 0.0 55742142 55739805 - + N - 2.72747248049589 N SA469 1 0.0 1.0 1 0 1 N Y 0.0 0.0 10 1.32777475557072 0.88518317038048 1.32777475557072 0.88518317038048 4 - 1.3 0.9478276905794972 HCT116-unstranded 5.0 56634 CCAGTTAATGGAAAGCAGAGTCAAAACTTTTCAGAAACTTTCACACCTTCATGGAAAGCTTATTCTTCTAATTACACAAGTAACAGCATCAGAGAAGACAAAGGGAGCAACTTCCCCTGGACAGAAGGCAAAGTTGGTGTATGAAGAAG|TCAGGTGAGAAGGAGCACCAAGGACGTCATGGAGGTCATGACCGCGCATCCTGAGAGAGACTGGAGAACTGGTGTCCGAGAGGCCCCGCCAACACCTGTGTGATCAGTGGTTGCAGAGGCCAACATCGCCATGGGCTTTCAGGGCAGCTGGCGG 6 0.8467055994072941 0.6800005956662211 0.24424485387588896 Y Y 3.60103760561896 3.47505968208974 3.47505968208974 0 0.0 0.0 Y 0.0 N N 3846 99 ENSG00000163811 ENSG00000189350 + - 2 2 29171088 29275096 coding intron WDR43 FAM179A 29117509 29179477 + + 0.0 29165247 29217082 + - N - 0.406474820143885 N SA469 1 0.0 1.0 1 0 1 N Y 0.0 0.0 6 0.988454540258202 0.8556770647011299 0.988454540258202 0.8556770647011299 4 - 0 0.973874574739074 HCT116-unstranded 5.0 78467 GAGGTGGACCGCCTGGCCCGAAAACCCAACAGTGTGGTCATCAGCTGCGGCATGAAGCTGAACCTGGACTATCTGCTGGAGATGCTTTGGGAGTACTTGGCCCTGACCTGCATCTACACCAAGAAGAGAGGACAGAGGCCAGACTTCACAGACGCCATCATTCTCCGGAAAGGGGCCTCAGTGGAGCACGTG|GGTGAAACCCAAGGCGCTCTAGAGGAGATGAATTATGGATCCGCCCTCCCGGAATCCTGGCTCGGCCCTCCCCACGCCACCCAGGGCCAGTCGGGTCTGCTCACAGCCCGAGGAGGCCGCGTGTCCAGCCGCGGGCAAGAGACAGAGCAGGTCCCTGTGTCTCCAAGTCCCTGAGCCCGTGACACCGGCCCCA 6 0.923617989561592 0.355230730510766 0.4282988018725061 Y Y 3.65488030998075 3.6035982586987 3.6035982586987 0 0.0 0.0 Y 0.0 N Y 1922 472 ENSG00000108591 ENSG00000091536 + - 17 17 18011285 18083116 coding utr5p DRG2 MYO15A 17991200 18012020 + + 0.0 18007995 18021896 + - N - 0.444801070085849 N SA469 1 0.0 1.0 1 0 1 N Y 0.0 0.0 8 1.43104612544844 1.31302170273104 1.43104612544844 1.31302170273104 4 - 0.375 0.957986085846608 HCT116-unstranded 5.0 57895 TCAGTATGAACTCTTAAAACATGCAGAAGCAACTCTAGGAAGTGGGAATCTGAGACAAGCTGTTATGTTGCCTGAGGGAGAGGATCTCAATGAATGGATTGCTGTGAACACTGTGGATTTCTTTAACCAGATCAACATGTTATATGGAACTATTACAGAATTCTGCACTGAAGCAAGCTGTCCAGTCATGTCTGCAGGTCCG|AGGCACTAAAAGAAGAAATCAAAGAGATGCATGGATTGCGGATATTTACCTCTGTCCCCAAACGCTGACCACGCCCTGGCTGCATAGATGCTGCTGCTTAAGACCTTGGATGAACTTCACTGACATCATTCTTCCCTAAGCAGTCACCAAA 14 1.0 0.9717502774146558 0.256192806037473 N Y 3.56183091248087 3.3636127166471805 3.3636127166471805 0 0.0 0.0 Y 0.0 N Y 4362 1107 ENSG00000114978 ENSG00000163170 + - 2 2 74406025 74375121 coding coding MOB1A BOLA3 74382165 74362525 - - 0.0 74394141 74362785 - + N - - N SA469 3 0.0 1.9 1 7 2 N N 0.0 0.0 10 1.46792875754763 1.08434938371609 1.46792875754763 1.08434938371609 4 - - 0.9052795735645592 HCT116-unstranded 5.0 224827 AGAGGATTTGGAAAGGCAGATTGATATACTAGGACGACCAGTCTCAGCTCGCGTACATGGACATAGGGTACTCTGGGAGGAGGTAGTACATTCAGCATCTGCACCAGAGCCTCCAAATACTCAGCTCCAATCTGAGGCAACCCAACATAAATCTCCAGTGCCCCAAGAGTCACAAGAGAG|AGGAATCAAGGCCAGAGGTGTGAACAAGGTGTCAGCTCTGAAGGGAAGGTTTTTCTAAGGATGGACCCACACCAGAAGGTCCCTAGCATATATAATGGGGATACTTTACAAACTCCTGAGTATGAAAAAGTCTCTCAGTATGAGGACCAGTTAGAAAGGCATGAGGGTAGGCACATGGAAGAAAGACGG 4 0.556796846804445 0.8472750008664051 0.373100376892302 Y Y 3.27551679143744 3.5156701673583 3.27551679143744 0 0.0 0.0 Y 0.0 N Y 976 123 ENSG00000198315 ENSG00000226314 + - 6 6 28124089 28137372 coding intron ZNF192 ZNF192P1 28109716 28129559 + + 0.0 28117402 28134279 + - N - 0.107833312749 N SA469 1 0.0 1.0 1 0 1 N Y 0.0 0.0 5 0.973701487418527 1.1286085422351102 1.1286085422351102 0.973701487418527 4 - 0.4 0.9629928382746228 HCT116-unstranded 5.0 2738 CGGGTCGGGGGCCAAAGCGGTCCATGAGGATCCCCAGTGGCAGGGTGGTGGCGCTGAGCACGAAGGAACCAATGGTGAAGCCCAGGTTGAGCATCTCGTCCTGCTGGTCACAGCCTGGCCACCTGCGCTGCTCATCCTGGGTGGTGTTGGTGCTGCTCTCAG|ACACACAGTCACATTCCAGTGTGACAAATACTCCTTCACCAGGAGACAGCGCTACCACTCCGGGATCTTGAAGACTCTCTACAGAGAGCCTAGGCCTGGCAGTCTTCACAGATGACACCCAACAGGGAGCACGTTTATTAAA 4 0.753379298928307 0.26396310879698104 0.451699566323123 Y Y 3.14946850989133 3.32523140661629 3.14946850989133 0 0.0 0.0 Y 0.0 N N 107 1058 ENSG00000149150 ENSG00000134809 - + 11 11 57283259 57298276 coding utr3p SLC43A1 TIMM10 57252007 57295936 - - 0.0 57268802 57296002 + - N - 0.0174292760107096 N SA469 1 0.0 1.0 1 0 1 N Y 0.0 0.0 6 1.02533717235739 0.8999362232201541 1.02533717235739 0.8999362232201541 4 - 2.66666666666667 0.945254029924593 HCT116-unstranded 5.0 102769 GACAGAAAAGGCAGGATTTAAGAGAGCTTTCATCATCACAGGGCAGACATATACACGAAAAGTGGATATTGAAGTACTGTCTGTGCTGGCTAGCTTGGGGGCATCAGTGCACAAGATTTGCACCGACATACGCCTCCTGGCAAACCTCAAGGAGATGGAGGAACCCTTTGAAAAACAGCAGATT|GGGCAGATGATTCTGGACCAGATGAAGCCTGAGGAGCCTTCCAGCTCTAAGATAGCAGGATAGGAGACTTCTAAGATTGGAGCTGCAGAAGACTTGCCAGCCCACCAGCACAATGTCAGGAAGCCAT 7 0.506725046129422 0.275499326829931 0.43091107169466897 Y Y 3.29127915838687 3.43101850966944 3.29127915838687 0 0.99215122148193 0.0 Y 0.00320512820512819 N Y 5347 3855 ENSG00000239900 ENSG00000100359 + - 22 22 40764823 40806122 coding utr5p ADSL SGSM3 40742507 40766595 + + 0.0 40757346 40796700 + - N - - N SA469 1 0.505494505494505 1.0 1 0 2 N Y 0.0 0.505494505494505 7 0.973701487418527 0.6712639042051971 0.973701487418527 0.6712639042051971 4 - - 0.973023725394504 HCT116-unstranded 5.0 102714 CCGAGGCATTTCTTACCGCAGATACTATATTGAATACGCTGCAGAACATTTCTGAAGGATTGGTCGTGTACCCCAAAGTAATTGAACGGCGCATTCGGCAAGAGCTGCCTTTCATGGCCACAGAGAACATCATCATGGCCATGGTCAAAGCTGGAGGTAGCCGCCAGG|GCAGATGATTCTGGACCAGATGAAGCCTGAGGAGCCTTCCAGCTCTAAGATAGCAGGATAGGAGACTTCTAAGATTGGAGCTGCAGAAGACTTGCCAGCCCACCAGCACAATGTCAGAAGGAAGAGTCAGCAGAGCAACC 6 0.7246956554539169 0.503831198111135 0.917037952196919 Y Y 3.52208566311286 3.50268972052044 3.50268972052044 0 0.992880258899676 0.0 Y 0.0 N Y 5347 3855 ENSG00000239900 ENSG00000100359 + - 22 22 40764823 40806122 coding utr5p ADSL SGSM3 40742507 40766595 + + 0.0 40760369 40796700 + - N - - N SA469 1 0.3823529411764711 1.0 1 0 2 N Y 0.0 0.3823529411764711 5 1.14336159507479 1.00320759309788 1.14336159507479 1.00320759309788 4 - - 0.973884786172685 HCT116-unstranded 5.0 102381 AGCCGCCAGGATTGCCATGAGAAAATCAGAGTGCTTTCTCAGCAGGCAGCTTCTGTGGTTAAGCAGGAAGGGGGTGACAATGACCTCATAGAGCGTATCCAGGTTGATGCCTACTTCAGTCCCATTCACTCCCAGTTGGATCATTTACTGGATCCTTCTTCTTTCACTGGTCGTGCCTCCCAGCAGG|GCAGATGATTCTGGACCAGATGAAGCCTGAGGAGCCTTCCAGCTCTAAGATAGCAGGATAGGAGACTTCTAAGATTGGAGCTGCAGAAGACTTGCCAGCCCACCAGCACAATGTCAGGTAGAGGCAGGGGCTGGACTTGGA 21 0.973762088880373 0.98619263009549 0.7200371341428741 Y Y 3.45553575842133 3.50268972052044 3.45553575842133 0 0.9575761495182048 0.0 Y 0.0171807971717433 N Y 5347 3855 ENSG00000239900 ENSG00000100359 + - 22 22 40764823 40806122 coding utr5p ADSL SGSM3 40742507 40766595 + + 0.0 40761060 40796700 + - N - 0.717229407944326 N SA469 1 0.3928571428571429 1.0 1 0 2 N Y 0.0 0.3928571428571429 20 1.26876254421202 1.0327136987772298 1.26876254421202 1.0327136987772298 4 - 9.75 0.98975341396599 HCT116-unstranded 5.0 225855 GCTGCAGCAGCTACCGCCCTGACCTGTCTCTTGCCAGGACTGTGGAGCGGATAGGGGGAGTAGGAGTAGAGAAGGGAACAAGGGAGCAAGGGAACAAGGGACATCTGAACATCTAATGTGAGAAGAGAAACATCCTTCT|CTTCTCTGGACGGCCGCCCTGGGGACCGGGTGAATCTCTCCTGCGGAGGAGTCTCTCATCCCATCCGCTGGGTCTGGGCACCCAGCTTCCCGGCCTGCAAGGGCCTGTCCAAAGGACGCCGACCGATCCTGTGGGCCTCTTCGAGCGGGACCCCCACCGTGCCTCCCCTCCAGCCTTTCGTC 4 0.9462738778495758 0.9692720005749258 0.4041024703099009 Y Y 3.4439989565073 3.29553522864581 3.29553522864581 0 0.0 0.0 Y 0.0 N N 69 497 ENSG00000250641 ENSG00000204420 + - 6 6 31685695 31694491 utr3p coding XXbac-BPG32J3.19 C6orf25 31674681 31686371 + + 0.0 31685666 31691416 + - N - - N SA469 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 5 0.988454540258202 0.8335474854416179 0.988454540258202 0.8335474854416179 4 - - 0.985643359248985 HCT116-unstranded 5.0 335988 ACACCCTCTCAATGCAAGGAACGGAATTTACAAGATCCTGTGCCAAAGGAATCACCAAAATCTTGTTTTTTTGATAGCCGATCAAAGTCTTTACCATCACCTCATCCAGTTCGCTATTTTGATAACTCAAGTTTAGGCCTTTGTC|CAGATGCTTGCTCAGAAATCTGGCAATATTATCAACATGTCTTCTGTGGCTTCCAGCGTCAAAGGTGGGTCTGTCTCCTTCCGAGGACTGCGATGCTCATACACGCACATCATTAAGAGCTCTGCGTTTGGGAACAGGCATAGCAGAGATTATAATTTCAAGTATTGAAATGATTTCAAAACTGCTTTTTTCAAAATTGGTATTAAGTTCCT 10 1.0 0.497014053877844 0.32133156474649 Y Y 3.6638564588150495 3.5565722776755897 3.5565722776755897 0 0.0 0.0 Y 0.0 N Y 3752 274 ENSG00000138778 ENSG00000164039 + - 4 4 104119566 104021040 coding intron CENPE BDH2 104026963 104000592 - - 0.0 104029960 104007697 - + N - 1.87337926049569 N SA469 1 0.0 1.0 1 0 1 N Y 0.0 0.0 12 0.929442328899504 1.5343174953261598 1.5343174953261598 0.929442328899504 4 - 4.5 0.96854289402616 HCT116-unstranded 5.0 2449 CCAGAAGGCGCTAGACCTGGACTCCAGCTGTAAGGAGGCGGCAGACGGCTACCAGCGCTGTATGATGGCGCAGTACAACCGGCACGACAGCCCCGAAGATGTGAAGCGACGAGCCATGGCCGACCCTGAGGTGCAGCAGATCATGAGTGACCCAGCCATGCGCCTTATCCTGGAACAGATGCAGAAGGACCCCCAGGCACTCAGCGA|CCTCTGCCCAGCCTGCCTCTCGCCATGCGGCAGCCTGAACTTTCCACCTCCCCGGAGAGGCTTTGGCTGGTTTGTGATGTTGGCATCTGAGCTGTGGGCCAGGATCGGAACTACTTCCTGGCCTGGGTACGAAGCCATGGCCAGAGTGGGCAGCTGCCCCTGAGGGTC 20 1.0 0.848411118842202 0.5089110551845349 Y Y 3.4284977093830498 3.29908909870209 3.29908909870209 0 0.0 0.00265957446808518 Y 0.00265957446808518 N N 20404 878 ENSG00000168439 ENSG00000149781 + - 11 11 63972015 63991354 coding intron STIP1 FERMT3 63952744 63974150 + + 0.0 63971094 63974342 + - N - 0.0222074304025507 N SA469 2 0.0 1.5625 1 9 2 N Y 0.0 0.0 16 1.49743486322698 1.27613907063186 1.49743486322698 1.27613907063186 4 - 0.0625 0.939866523598221 HCT116-unstranded 5.0 2668 CAGCGCTGTATGATGGCGCAGTACAACCGGCACGACAGCCCCGAAGATGTGAAGCGACGAGCCATGGCCGACCCTGAGGTGCAGCAGATCATGAGTGACCCAGCCATGCGCCTTATCCTGGAACAGATGCAGAAGGACCCCCAGGCACTCAGCGAA|TCGCAAGCAGGACTGGTCAGACCATGCTATTTGGTGGGAACAGAAGAGGCAGTGGCTGCTGCAGACCCACTGGACACTGGACAAGTACGGGATCCTGGCCGACGCACGCCTCTTCTTTGGGCCCCAGCACCGGCCCGTCATCCTTCGGTTGCCCAACCGCCGCGCACTGCGCCTCCGTGCCAGCTTCT 16 0.975968602080442 0.640952966671254 0.715835503057523 Y Y 3.40914161958398 3.7255184510618697 3.40914161958398 1 0.0 0.0 Y 0.0 N Y 20404 878 ENSG00000168439 ENSG00000149781 + - 11 11 63972015 63991354 coding coding STIP1 FERMT3 63952744 63974150 + + 0.0 63971094 63978083 + - N - - N SA469 2 0.0 1.4 1 4 2 N Y 0.0 0.0 10 1.1507381214946202 1.4015400197690902 1.4015400197690902 1.1507381214946202 4 - - 0.9453631569257142 HCT116-unstranded 5.0 359583 CCAAGTGCGAGTTCCTCGCCAACCTGCACATCACAGCCCTGCTGAATGTCTCCCGACGGACCTCCGAGGCCTGCGCGACCCACCTACACTACAAATGGATCCCTGTGGAAGACAGCCACACGGCTGACATTAGCTCCCACTTTCAAGAAGCAATAGACTTCAT|TGCAATTCAGTTTGTTCTCAGTGATGAGTTTAGTCATCTTCGTCCAGAACAGCGGTTGGCTTTATTGCATGAAGGTACTGGTCCTCGTGTTATTTCTGCT 2 0.0210145106501494 0.354089478423687 0.5255495929096379 N Y 3.472331195140661 3.281437773652029 3.281437773652029 0 0.0 0.0 Y 0.0 N Y 1666 3646 ENSG00000138166 ENSG00000108055 + - 10 10 112271302 112364394 coding coding DUSP5 SMC3 112257596 112327449 + + 0.0 112266912 112335094 + - N - - N SA469 1 0.0 1.0 1 0 2 Y N 0.0 0.0 5 1.01796064593755 1.1286085422351102 1.1286085422351102 1.01796064593755 4 - - 0.931167212274826 HCT116-unstranded 5.0 359582 GCCCGACGAGGCGGCGCGCGCGCGGCTCCTGCAGGAGGGCGGCGGCGGCGTCGCGGCCGTGGTGGTGCTGGACCAGGGCAGCCGCCACTGGCAGAAGCTGCGAGAGGAGAGCGCCGCGCGTGTCGTCCTCACCTCGCTACTCGCTTGCCTACCCGCCGGCCCGCGGGTCTACTTCCTCAAA|GCAATTCAGTTTGTTCTCAGTGATGAGTTTAGTCATCTTCGTCCAGAACAGCGGTTGGCTTTATTGCATGAAGGTACTGGTCCTCGTGTTATTTCTGCTTTTGTGGAGATTATTTTTGATAATTCAGACAACCGGTTACCAATCGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAA 1 0.708663477829697 0.5240799956297479 0.632903841155266 N Y 3.22552892975046 3.26464233693271 3.22552892975046 2 0.0 0.0 Y 0.00270270270270268 N Y 1666 3646 ENSG00000138166 ENSG00000108055 + - 10 10 112271302 112364394 coding coding DUSP5 SMC3 112257596 112327449 + + 0.0 112258258 112335094 + - N - - N SA469 1 0.0 1.0 1 0 2 Y N 0.0 0.0 7 1.13598506865495 1.4753052839674698 1.4753052839674698 1.13598506865495 4 - - 0.984849001877407 HCT116-unstranded 5.0 2591 ATTATACTCCAACTGGGGAGTTCCGTGTGGACCGTGAAGGTTCTCCAGTGCTGCTCAACTGCCTCATGTACAAGATGTGTTACTATCGCTTTGGACAGGTTTACACAGAAGCCAAGCGTCCTCCAGGCTTTGACCGTGTCCGAAATGCTGAGATTGGGAATAAAGACTTTGAGCTTGATGTCCTGGAGGAAGCATATACCACAGAACATTGGCTGGTCAGGATATACAAG|TCGGCTCTCAGCAGCTGCTGCTGGTTTCTCGGCTCCAGCACCACGAGTACCGCACTCTGAGGTTTACAAAGCACTCTGCTTCACCGACTGTGATCCTCACAGTCCTGTCCG 23 0.599440562033474 0.857307040916812 0.633138500293586 Y Y 3.64759957832565 3.1222532794138904 3.1222532794138904 0 0.0 0.0 Y 0.0 N N 9252 2740 ENSG00000134910 ENSG00000149554 + - 11 11 125495110 125546150 coding utr5p STT3A CHEK1 125461607 125495036 + + 0.0 125490021 125495337 + - N - 0.515829756839412 N SA469 1 0.0 1.0 1 0 1 N Y 0.0 0.0 6 0.619628219266336 0.5606160079076371 0.619628219266336 0.5606160079076371 4 - 11.8333333333333 0.955785459314005 HCT116-unstranded 5.0 381881 CCACAGAGGCGTTCCCTGTACTGGTGGGTGACATGGACAACAGTGGCAGTCTCAACGCTCAGGTCATTCACCAGCTGGGCCCCGGTCTCAGGTCCAAGATGGCCATCCAGACCCAGCAGTCGAAGTTTGTGAACTGGCAGGTGGACGGGGAGTATCGGGGCTCTGACTTCACAGCAGCCGTCACCCTGGGGAACCCAGACGTCCTCGTGGGTTCAGGA|TGCCAGGCCAAGGTGGAGCAAGCGGTGGAGACAGAGCCGGAGCCCGAGCTGCGCCAGCAGACCGAGTGGCAGAGCGGCCAGCGCTGGGAACTGGCACTGGGTCGCTTTTGGGATTACCTGCGCTGGGTGCAGACACTGTCTGAGCAGGTGCAGGAGGAGCTGCTCAGCTCCCAGGTCACCCAGGAACTGAGGGCGCTGATG 21 1.0 0.810508034812413 0.6867592692880289 Y Y 3.3644779525477304 3.27820542559317 3.27820542559317 1 0.0 0.0 Y 0.00238095238095248 N Y 13456 688 ENSG00000130204 ENSG00000130203 + - 19 19 45406946 45412650 coding coding TOMM40 APOE 45393826 45409011 + + 0.0 45397323 45411017 + - N - - N SA469 6 0.0 4.357142857142859 1 22 4 Y Y 0.0 0.0 28 1.55644707458568 1.4236695990286 1.55644707458568 1.4236695990286 4 - - 0.9201507629098608 HCT116-unstranded 5.0 381880 CGTTGGGCCAGGCGGGCATGCACGCAACATACTACCACAAAGCCAGTGACCAGCTGCAGGTGGGTGTGGAGTTTGAGGCCAGCACAAGGATGCAGGACACCAGCGTCTCCTTCGGGTACCAGCTGGACCTGCCCAAGGCCAACCTCCTCTTCAA|AGGATGCCAGGCCAAGGTGGAGCAAGCGGTGGAGACAGAGCCGGAGCCCGAGCTGCGCCAGCAGACCGAGTGGCAGAGCGGCCAGCGCTGGGAACTGGCACTGGGTCGCTTTTGGGATTACCTGCGCTGGGTGCAGACACTGTCT 5 0.0724505620998433 0.8381441624869491 0.654133390091671 Y Y 3.53721618787652 3.2886252193512897 3.2886252193512897 2 0.0 0.0 Y 0.0 N Y 13456 688 ENSG00000130204 ENSG00000130203 + - 19 19 45406946 45412650 coding coding TOMM40 APOE 45393826 45409011 + + 0.0 45404567 45411017 + - N - - N SA469 5 0.0 4.4 4 5 4 Y Y 0.0 0.0 5 0.9589484345788531 1.2613860177921798 1.2613860177921798 0.9589484345788531 4 - - 0.90091784515666 HCT116-unstranded 5.0 2803 TTCGCGCTCTTCTTCTTCTTCCAGGGACTCAGCACCTGGCAGAAAACCCCTGCAGAGTCGAGGGAGCACAACCGGGACTGCATCCTCCTCGACTTCTTTGACGACCACGACATCTGGCACTTCCTCTCCTCCATCGCCATGTTCGGGTCCTTCCTG|CTTTCCCCAGACATGGCCAACAAGGGTCCTTCCTATGGCATGAGCCGCGAAGTGCAGTCCAAAATCGAGAAGAAGTATGACGAGGAGCTGGAGGAGCGGCTGGTGGAGTGGATCATAGTGCAGTGTGGCCCTGATGT 7 0.36745870748180703 0.854955701947764 0.483979217838801 Y Y 3.23887075137909 3.5587317031712 3.23887075137909 0 0.992725557376235 0.0 Y 0.0 N Y 3092 625 ENSG00000149577 ENSG00000149591 + - 11 11 117068160 117075498 coding utr5p SIDT2 TAGLN 117049449 117070037 + + 0.0 117066631 117073718 + - N - - N SA469 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 5 0.826170959021781 0.892559696800317 0.892559696800317 0.826170959021781 4 - - 0.963178542515785 HCT116-unstranded CGHSA0410 5.0 230841 TTTCAGAGCCTCTGTGTGCTGGGTTACTGTATACTTCCCTTGACAGTAGCAATGCTGATTTGCCGGCTGGTACTTTTGGCTGATCCAGGACCTGTAAACTTCATGGTTCGGCTTTTTGTGGTGATTGTGATGTTTGCCTGGTCTATAGTT|GTGCTTCCCATTGCTGCAGGTGAAGAAGAACGCTGAAGCCGAGGCCAAAAGAGCATGTGAGTGGCTTCAAGCAACAGGATTCCCTCAGTATGTGCAGCTTTTTGAAGAAGGTTCGTTTCCCCTGGATATTGGCTCTGTGAAGAAAAACCACG 4 0.730343317773907 0.9539242989487527 0.611486336508295 N Y 3.11910998451155 3.612079893993029 3.11910998451155 3 0.0 0.0 Y 0.0 N Y 2612 469 ENSG00000181704 ENSG00000130052 + - X X 67757127 67945684 coding coding YIPF6 STARD8 67718165 67867508 + + 0.0 67742759 67885341 + - N - - N SA469 1 0.0 1.0 1 0 1 N N 0.0 0.0 5 0.870430117540805 0.9958310666780392 0.9958310666780392 0.870430117540805 4 - - 0.967908760674593 HCT116-unstranded 5.0 239928 TGCTCATCTACCTCAGCCAGCTGGGCAGATTGCTACACAGCCAACTCAAGTCTCTCTCCCACCCACCGCAGAGCCAGCAAAAACAGCTCAGGCTTTGTCTTCAGGATCAGGTTCACAAGAAACCAAGATCCCAATCAGTCTAGTACTAAGATTAAG|ATGAGCCCCACCACTGTGCAGTGGCTTGGGTGAAGAACCACACTTTCAACCTGAGTGCTGCTGAACAGCTGGTACTGAGCGTGCCCCTGGACACTGCAGGTCACCCAGAGCCCTGCCTCATGTTCCGGCCACCCCCCGCCAATGCCAGCCTGCAGGACATCCTCAGCCACCGCTTCAATGAGACGCAGCCTTG 3 1.0 0.8967684632860391 0.22246956954435 Y Y 3.32104569437424 3.44296588673741 3.32104569437424 0 0.0 0.0 Y 0.0 N N 2154 56 ENSG00000172939 ENSG00000172940 + - 3 3 38296979 38319806 coding coding OXSR1 SLC22A13 38206580 38307303 + + 0.0 38289223 38307485 + - N - - N SA469 1 0.0 1.0 1 0 1 N Y 0.0 0.0 6 0.929442328899504 1.2613860177921798 1.2613860177921798 0.929442328899504 4 - - 0.9802524300604408 HCT116-unstranded 5.0 132197 CAAGCCCAACAGGCCCAGAGTGGCACTGGACAGACCATGCAGGTGATGCAGCAGATCATCACTAACACAGGAGAGATCCAGCAGATCCCG|ATTTTTGCTGGTCTTCAGCTGCCTGGTGCTGTCTGTGCTGTCCACTATCCAGGAGCACCAGGAACTTGCCAACGAGTGTCTCCTCATCTTGGAATTCGTGATGATCGTGGTTTTCGGCTTGGAGTACATCGTCCGGGTCTGGTCCGCCGGATGCTGCTGCCGCTACCGAGGATGGCAGGGTCGCTTCCGCTTTGCCAGAAAGCCCTTCT 5 0.123097594412517 0.550862674134032 0.7034731346852879 Y Y 3.3158845354214104 2.98101685004501 2.98101685004501 0 0.0 0.0 Y 0.0 N Y 1576 470 ENSG00000066136 ENSG00000117013 + - 1 1 41237275 41306124 coding coding NFYC KCNQ4 41157320 41249684 + + 0.0 41228718 41282937 + - N - - N SA469 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 6 0.929442328899504 1.12123201581527 1.12123201581527 0.929442328899504 4 - - 0.9318034397439492 HCT116-unstranded 5.0 359653 CGAGCTAGAGCGACAGTTTCTTGAATTGCTGCAGTTCAACATCAATGTTCCTTCCAGTGTCTATGCCAAGTATTATTTTGATCTTCGTTCTCTGGCAGAAGCGAACAACCTGAGCTTTCCCTTGGAGCCCCTGAGCAGGGAGAGGGCTCACAAGCTTGAGG|AAAGCTCTGGTTCGTCCTCACGATGCTGCTGCGGATGCTGGTGATTGTCTTGGCGGGGCGACCCGTCTACCAGGACGAGCAGGAGAGGTTTGTCTGCAACACGCTGCAGCCGGGATGCGCCAATGTTTGCTACGACGTCTTCTCCCCCGTGTCTCACCT 11 1.0 0.7704883718338751 0.757898888754708 Y Y 3.1986844216336 3.5246463161926003 3.1986844216336 4 0.0 0.0 Y 0.009384980113246507 N Y 2409 156 ENSG00000108100 ENSG00000177291 + - 10 10 35860852 35897863 coding coding CCNY GJD4 35535953 35894338 + + 0.0 35855113 35896506 + - N - - N SA469 1 0.0 1.0 1 0 2 N Y 0.0 0.0 6 1.01796064593755 1.19499728001365 1.19499728001365 1.01796064593755 4 - - 0.980948287542515 HCT116-unstranded 5.0 132014 TCTGTTTTTTCCCAAGGTCGGGAGAGACTGCTTGCCCGGTCTGCGGAGGGCTGGATGCGGTCTGAGTCCGCTCTCCGCCGGCTCCCTGCCAGCTGGGCCACAGACTTGTCCAGGTCAACCCGAAAGCTCTCAGCACAAGAGGTTGGTTCCTCAGGGGAAGGGTCTTCCTCTTGGATCAAGTCCAAGGTCAGCATCCCATCCGAGGTAGAGGTGGAAG|CCTTTTCGTGTTGTGCACTGTGGTGCCTCCCAGGACAATCCTCACTCCAGGAGTGGTGCGGTTCAGGTTATAAACTGTTAGAGCCTCTTCATAGGTGGCTCCTCCAATTACAAACACAATGATATCCTGAGGTCTGCAA 6 1.0 1.0 0.24424485387588896 Y Y 3.40843941938133 3.55553920790569 3.40843941938133 0 0.0 0.00280112044817948 Y 0.00280112044817948 N Y 129 896 ENSG00000023902 ENSG00000136631 - + 1 1 150132260 150117505 coding intron PLEKHO1 VPS45 150121373 150039369 + + 0.0 150131014 150082742 - + N - 0.465411043816493 N SA469 1 0.0 1.0 1 0 1 N Y 0.0 0.0 7 1.4236695990286 0.811417906182106 1.4236695990286 0.811417906182106 4 - 9.85714285714286 0.982804091287192 HCT116-unstranded 5.0 132145 ATGAACCGAATGCATGAAAGCATGAAACTGTTTGACAGCATTTGTAATAACAAATGGTTTACAGAAACTTCAATCATTCTCTTCCTTAACAAGAAAGACCTTTTTGAGGAAAAAATAAAGAGGAGTCCGTTAACTATCTGTTATCCAGAATACAC|AGTGCCAGGGCAGGGGCCCTTGGAGTGACTTGGCTGGGGTCTGTGGCCCGATCCCCCTGCCGTCCCTCAGGACCCGGGCTTTCTGCTGTACAGACTTCTCGTGGGCAGCCTCCCCTCGGAACTCGGGCATCATGGCCTCAGAGGCTCGGGGTGGTCTG 2 1.0 0.804820123321244 0.4744504070903621 N Y 3.71041843152174 3.0825173776156904 3.0825173776156904 0 0.0 0.0 Y 0.0 N Y 6815 3589 ENSG00000065135 ENSG00000116337 + - 1 1 110136975 110174673 coding intron GNAI3 AMPD2 110091233 110158726 + + 0.0 110129504 110162762 + - N - - N SA469 1 0.0 1.0 1 0 1 N N 0.0 0.0 5 1.05484327803674 0.8040413797622691 1.05484327803674 0.8040413797622691 4 - - 0.969180823743575 HCT116-unstranded 5.0 276168 AGAACTGCTGAGTGACATGAAAGCTGATGTGACTCGACTCCCAGCTACCATTGCCCGAATTCCCCCAGTTGCTGTGAGGTTACAGATGTCAGAGCGTAACATTCTCAGCCGCCTGGCAAACCGGGCACCCGAACCTACCCCACAGCA|GTACCATGGGGCGCAAGTTGGACCCTACGAAGGAGAAGCGGGGGCCAGGCCGAAAGGCCCGGAAGCAGAAGGGTGCCGAGACAGAACTCGTCAGATTCTTGCCTGCAGTAAGTGACGAAAATTCCAAGAGGCTGTCTAGTCGTGCTCGAAAGAGGGCAGCCAAGAGGAGATTGGGCTCTGTTGAAGCC 5 1.0 0.928383048440396 0.5752006156383621 Y Y 3.07060985334107 3.65488030998075 3.07060985334107 3 0.0 0.0 Y 0.0 N Y 18444 15990 ENSG00000111642 ENSG00000111641 + - 12 12 6716642 6677857 coding utr5p CHD4 NOP2 6679249 6666029 - - 0.0 6680035 6677088 - + N - - N SA469 1 0.0 1.0 1 0 1 N Y 0.0 0.0 10 0.951571908159015 1.34252780841039 1.34252780841039 0.951571908159015 4 - - 0.972188629874285 HCT116-unstranded 5.0 393311 CTTCCGAACCTCTGAGCTCCGGACAGGCTCTGGAAGTGCTTTAGCTTCTTTCCTACACAGCGGCACCCGCCGGCTTCCAGGCTTCACACTTGTGAACTCTTCGGCTGCCTCTGACAGTTTATGTAATCCTGGGATGTCATTCAGTTCCCTCCTCTGTGAACCCTGATCACCTCCCCACCTCTCTTCCTCCGAGCCAGCCCCCTTCCTTTCC|GTAGCGGGCCCAGAGCTTGGGCTGCACATCGGAGCATTCGCGGATTAGGATGGGTAGGTCGGGATTCGCCTTCTTCAGCTCCACGTAGCGTTTCTCAATGAAGTCCCTGCGGGGCCGGAGAGAGCGCCGCGCGTGCTGTGGGCGGGGGCTTCC 22 0.930223331313073 0.516123711926025 0.4227113012784521 Y Y 2.71419614744645 3.51935717616377 2.71419614744645 0 0.9934819589936428 0.0 Y 0.0027397260273971397 N Y 660 2372 ENSG00000170458 ENSG00000131495 - + 5 5 140013286 140027370 utr5p coding CD14 NDUFA2 140011313 140018325 - - 0.0 140012877 140026841 + - N - 0.246166855557774 N SA469 1 0.0 1.0 1 0 2 N Y 0.0 0.0 18 1.4900583368071398 1.1654911743343 1.4900583368071398 1.1654911743343 4 - 62.7777777777778 0.9760091648912148 HCT116-unstranded 5.0 128461 GGCTGCATCGCTGCAGGAGAGGGCAGGGGCTGCCGCCATCCTCATCCGCGACCCGCGAACAGCACGCATGGGGTGGCGGCTCCTCACCCAGGATGAAGGCCCAGCCCTGGTGCCCGGGGGCCGGCTCGGGGACTTGTGGGATTATCACCAGCACCGATACCTGCAAG|ATGTGCTAGCCCTGGCGCTGGCTATTGAAGAGCTAGCAGTGGCCACATGGAAGCCCTGGACAGCTTAGTGGTGTGCTCTACAAATGACTCTGTCCAGGGCATCTCCCAACACAGCAGTGGGACAAGAAGACAATGACGGGA 5 1.0 0.889526768832619 0.208899494801928 Y Y 3.73808832274579 3.42589720350996 3.42589720350996 0 0.0 0.0 Y 0.0 N N 630 1046 ENSG00000181873 ENSG00000154358 + - 1 1 228369958 228566575 coding upstream IBA57 OBSCN 228353516 228395831 + + 0.0 228362730 228385269 + - N - - N SA469 1 0.0 1.0 1 0 1 N Y 0.0 0.0 5 1.07697285729625 0.988454540258202 1.07697285729625 0.988454540258202 4 - - 0.972909719109177 HCT116-unstranded 5.0 275964 CTCGGGCTCGGGCGGCCGGGAAGCGACGGGATGGCTGCGGCCGGCGGCGGCGGCGGCGGGGCGGCGGCGGCGGGCCGAGCCTACTCGTTCAAGGTGGTGCTGCTGGGGGAAGGCTGCGTGGGGAAGACGTCGCTGGTGCTGCGCTACTGCGAGAACAAGTTTAACGACAAGCACATCACCACTCTGCAGGCATCATTCTTAACAAAGAAGTTAAATATTGGTGGGAAAAGAGTAAACCTTGCCATATGG|ATTATATATGAACAAGAAGGAGTATATATTCACTCATCTTGTGGAAAGACCAATGACCAAGACGGCTTGATTTCAGGAATATTACGTGTTTTAGAAAAGGATGCCGAAGTAATAGT 7 0.4820409331303979 0.934692550553371 0.3689187107541671 N Y 3.40319013214585 3.438245808162049 3.40319013214585 0 0.0 0.0 Y 0.0 N Y 2964 1569 ENSG00000080371 ENSG00000121749 + - 12 12 72184699 72320629 coding coding RAB21 TBC1D15 72148654 72233487 + + 0.0 72163639 72265850 + - N - - N SA469 1 0.17877094972067 1.0 1 0 1 Y N 0.17877094972067 0.0 7 1.3203982291508798 0.63438127210601 1.3203982291508798 0.63438127210601 4 - - 0.9737720703187572 HCT116-unstranded 5.0 224875 CATTATGAAGTTTTCACTCTACTTCTTGGCTTATGAGGATAAAAATGACATCCCTAAAGAAAAAGATGAAAAAATAGCCTGGGCGCTCTCCAGAAAAGCTACACTTGAGCTGACACACAATTGGGGCACTGAAGATGATGAGACCCAGAGTTACCACAATGGCAATTCAGACCCTCGAGGATTCG|AACAACGACTATCGTCTATTCCACAAGATGAGTAACAGCCACCCTCTTCGCCCCTTTACTGCAGTGGGGGAAATTGATCATGTGCACATTTTGTCTGAACATATTGGTGCCTTGTTGATTGGGGAAGAATATGGCGACGTCACATTCGTGGTGGA 7 1.0 0.954759364401502 0.441456343480264 Y Y 3.74913061111987 3.762733552573681 3.74913061111987 0 0.0 0.0 Y 0.0 N Y 17583 1675 ENSG00000124767 ENSG00000183826 + - 6 6 38670917 38607924 coding utr5p GLO1 BTBD9 38643719 38136227 - - 0.0 38650584 38565897 - + N - 5.60918921703886 N SA469 1 0.0 1.0 1 0 1 N Y 0.0 0.0 7 1.26876254421202 0.988454540258202 1.26876254421202 0.988454540258202 4 - 2.28571428571429 0.983587814839638 HCT116-unstranded 5.0 239190 GGAGCCTAGTCAAGCCTGAGAATTACAGGAGACTGGACATCGTCAGGTCGCTCTACGAAGATCTGGAAGACCACCCAAATGTGCAGAAAGACCTGGAGCGGCTGACACAGGAGCGCATTGCACATCAACGGATGGGAGATTGAAGATTTCTGTTGAAACTTACACTGTTTCATCTCAGCTTTTGATG|CCTCCTACGTGATCACAGACCTGACCCAGCTGCGGAAGATCAAGTCCATGGAGCGGGTGCAGGGTGTGAGCATCACGCGGGAGCTGCTGTGGTGGTGGGGCATGCGGCAGGCCACCGTCCAGCAACTTGTGGACCTCCTGTGCCGCCTGGAGCTCTACCGGGCTGCCCAGA 7 1.0 0.438153084572921 0.516020782161199 Y Y 3.2829653569618795 3.6659225983548303 3.2829653569618795 0 0.0 0.0 Y 0.0 N N 3497 130 ENSG00000134086 ENSG00000134070 + - 3 3 10193904 10285427 utr3p coding VHL IRAK2 10182692 10206549 + + 0.0 10191693 10219522 + - N - 0.144736842105263 N SA469 1 0.0 1.0 1 0 1 N Y 0.0 0.0 9 1.31302170273104 1.1286085422351102 1.31302170273104 1.1286085422351102 4 - 0 0.972109745795915 HCT116-unstranded 5.0 211303 ATGCGTCCCTGCGTAGGCGCAGCCTCCTCCTCATCTCCGCGCGGCCTGCGCCCTCCCTCCCCTGTAAGGGTCGCAGTCGGCAGCAGGGGGCAGCGAGCCCCGCCCTCCCCAGCTGAGGGGGCGGGAGGCCACGCCCCGGGGGGGGCTCCAGCGACCGACGGTTGAGCCCCTTGCGTTGTTCTCCTCCTCCCGGCCGTGTCGCACCGCCGGGACCGGCAGCCTG|GCCGCCTCGGCGGGGCCTGGGTTCCCACGCCCGCCAGGCTCCGCTCTACTCCGCCGCTTCCGGGTGTGCGCGGAGGCGCTGGGGCGGTGCCCTAGCCCGAGCCGCCCCGTCCGCC 11 0.8038642712099159 0.757208541861261 0.752033802174502 Y Y 3.2442133245704103 3.02188845513875 3.02188845513875 0 0.0 0.0 Y 0.0 N Y 708 254 ENSG00000237172 ENSG00000102871 - + 16 16 67185117 67194201 intron utr5p B3GNT9 TRADD 67182008 67188083 - - 0.0 67184574 67193741 + - N 15.5793272308283 5.53299921993634 N SA469 1 0.0 1.0 1 0 1 N Y 0.0 0.0 8 1.06959633087641 0.693393483464709 1.06959633087641 0.693393483464709 4 0.25 2.625 0.9636626990630258 HCT116-unstranded 5.0 211359 GGCGGCCTGGCCTAGACCAGGGGTGCAGCCAGCTTTTGGAGAACCTGGATGGCCTTAGGGTTCCTTCTGCGGCTATTGCTGAACCCCTGTCCATCCACGGGACCCTGAAACTCCACTTGGCCTATCTGCTGGACCTGCTGGGGCAGAGTTGATTGCCTTCCCCAGGAGCCAGACCACTGGGGGTGCATCATTGGGGATTCTGCCTCAG|GCTGCCGGTCCCGGCGGTGCGACACGGCCGGGAGGAGGAGAACAACGCAAGGGGCTCAACCGTCGGTCGCTGGAGCCCCCCCCGGGGCGTGGCCTCCCGCCCCCTCAGCTGGGGAGGGCGGGGCTCGCTGCCCCCTGCTGCCGACTGCGACCCTTACAGGGGAGGGAGGGCGCAGGCCGCGCGGAGATGAGGAGGA 3 0.7782543871321909 0.628672134088897 0.49016960890366 Y Y 3.4268022922038504 3.21228736308742 3.21228736308742 1 0.0 0.0 Y 0.0 N N 254 708 ENSG00000102871 ENSG00000237172 + - 16 16 67194201 67185117 utr3p intron TRADD B3GNT9 67188083 67182008 - - 0.0 67188359 67184574 - + N - - N SA469 1 0.0 1.0 1 0 1 N Y 0.0 0.0 5 1.1802442271739702 1.4015400197690902 1.4015400197690902 1.1802442271739702 4 - - 0.9726835828568609 HCT116-unstranded 5.0 78989 TGGACTCAGGCTACTTCTCTGACAACATCTTGTGCCACTTCTGTGCCAGCATGATCAGCGGTCTTGTCACCACTGCTGCCTCCATGCCTGTGGACATTGCCAAGACCCGAATCCAGAACATGCGGATGATTGATGGGAAGCCGGAATACAAGAACGGGCTGG|CAGGGGTGTGGGGAAGAACGAGGAACTGCGTCTTTATCACCATCTCTTCAACAACTATGACCCAGGAAGCCGGCCAGTGCGGGAGCCTGAGGATACTGTCACCATCAGCCTCAAGGTCACCCTGACGAATCTCATCTCACTGAATGAAAAAGAGGAGAC 8 1.0 0.238687457956728 0.113841041576012 N Y 3.4278353619737403 3.56129235625094 3.4278353619737403 0 0.0 0.0 Y 0.00310559006211186 N Y 2815 140 ENSG00000108528 ENSG00000108556 + - 17 17 4843546 4806369 coding coding SLC25A11 CHRNE 4840425 4801069 - - 0.0 4841318 4806058 - + N - - N SA469 1 0.0 1.0 1 0 1 N N 0.0 0.0 12 1.1654911743343 0.973701487418527 1.1654911743343 0.973701487418527 4 - - 0.90687350175461 HCT116-unstranded 5.0 359690 TGTGAAGCCACGGGCTGGGTCATAAGGACACTTCTCCTTCCCCTCCTCGAAGCTGGTTGGCAAGGTGAAGGCCTCAGCATCAATGGCTGCACAGAGGGGCTGGAAGGCGTGAGTCCCACATGCATAGAGGTGGGTAGAATTGAGCCGCTGCAGGAACCGCACATGGTTAAAGCACTCCGT|TGTAGCAGGGATCCTAGGTGAAGGGGGTGGGTATGAATTCCTGAAACTTGAGCAGGTTCCCTGAAGCAAGAGAACTCTGGCCTAGTCAAGTTGTCCTGCTTACTGTTCAATGTGGCAGCATTTCTGTTCCTGCTTTGCCATCTCCATCTCTGGTTTGCCCAGCACTTTCCCTTTAGGTGGTGTGGTCTTTATT 7 0.0555635541965861 0.583419253699496 0.735413229346083 Y Y 3.78105657260285 3.3619172994679904 3.3619172994679904 2 0.0 0.0 Y 0.0 N N 1555 1010 ENSG00000095539 ENSG00000119906 - + 10 10 102745628 102724893 coding downstream SEMA4G FAM178A 102729275 102672720 + + 0.0 102737389 102726570 - + N - - N SA469 1 0.0 1.0 1 0 1 N Y 0.0 0.0 7 0.9810780138383648 0.8483005382812929 0.9810780138383648 0.8483005382812929 4 - - 0.9601977547147272 HCT116-unstranded 5.0 359688 ATGGAGACTTCTCTGTGTACAGTGCCAGCACCCACAAGTTCTTGTACTATGATGAGAAGAAGATGGCCAATTTCCAGAACTTTAAGCCGAGGTCCAACAGGGAAGAAATGAAATTTCATGAGTTCGTTGAGAAACTGCAGGATATACAGCAGCGAGGAGGGGAAGAGAG|GTTCCCCTTATTATTATAGTGCCGCCCCCCGGGGCTCCGCCCCTGCCGCTGCTGCCGCTGCCTATGACCGCCACTAGTTACCGCGGGGACCACATCAAGCTTCAGGCCGACAGCTTCGGCCTCCACATCGTCCCCGTCTGACCCCACCCCGGAGGGAGGGAGGACCGACGCGACGCGATGCCTCCC 6 1.0 0.875677674479964 0.7651071565287021 Y Y 3.12485378528698 3.1750722615756 3.12485378528698 0 0.0 0.0 Y 0.0 N Y 307 325 ENSG00000166135 ENSG00000075891 + - 10 10 102309763 102589698 coding coding HIF1AN PAX2 102288829 102495360 + + 0.0 102296418 102587300 + - N - - N SA469 1 0.0 1.0 1 0 1 N Y 0.0 0.0 8 1.23187991211283 1.21712685927316 1.23187991211283 1.21712685927316 4 - - 0.976864698527516 HCT116-unstranded 5.0 393498 TACCTGATCCAGACGCAGAGAAACCTGAGGATTGGGATGAAGACATGGATGGAGAATGGGAGGCTCCTCAGATTGCCAACCCTAGATGTGAGTCAGCTCCTGGATGTGGTGTCTGGCAGCGACCTGTGATTGACAACCCCAATTATAAAGGCAAATGGAAGCCTCCTATGATTGACAATCCCAGTTACCAG|CATCTTCATGATACAGTTAAGAGGAATCTTGACAGCGCCACTTCCCCTCAGAATGGCGATCAACAGAATGGCTACGGGGACCTCTTTCCTGGGCATAAGAAGACTCGCCGGGAGGCCCCTCTGGGAGTTGCCATCTCTTCCAATGGACTGCCTCCAGCCTCCCC 13 0.941464719525991 0.936795986657196 0.904235307455957 Y Y 3.65488030998075 3.82080182197087 3.65488030998075 0 0.0 0.0 Y 0.0 N Y 41927 6153 ENSG00000127022 ENSG00000161021 + - 5 5 179157926 179223512 coding coding CANX MAML1 179105629 179159851 + + 0.0 179147561 179192327 + - N - 1.08156195404456 N SA469 1 0.0 1.0 1 0 4 Y Y 0.0 0.0 10 1.3794104405095802 1.26876254421202 1.3794104405095802 1.26876254421202 4 - 12.4 0.978331322914542 HCT116-unstranded 5.0 393499 CTCTTCTGCTGTTCTGGAAAGAAACAGACCAGTGGTATGGAGTATAAGAAAACTGATGCACCTCAACCGGATGTGAAGGAAGAGGAAGAAGAGAAGGAAGAGGAAAAGGACAAGGGAGATGAGGAGGAGGAAGGAGAAGAGAAACTT|GCATCTTCATGATACAGTTAAGAGGAATCTTGACAGCGCCACTTCCCCTCAGAATGGCGATCAACAGAATGGCTACGGGGACCTCTTTCCTGGGCATAAGAAGACTCGCCGGGAGGCCCCTCTGGGAGTTGCCATCTCTTCCAATGGACTGCCTCCAGCCTCCCCCCTCGGTCAGTC 10 0.6365480452069849 0.984947992779988 0.929574052299004 Y Y 2.6530008788611603 3.84271856484967 2.6530008788611603 0 0.0 0.0 Y 0.0 N Y 41927 6153 ENSG00000127022 ENSG00000161021 + - 5 5 179157926 179223512 coding intron CANX MAML1 179105629 179159851 + + 0.0 179151784 179192327 + - N - 1.08341006636049 N SA469 1 0.442176870748299 1.0 1 0 4 N Y 0.442176870748299 0.0 5 1.08434938371609 0.988454540258202 1.08434938371609 0.988454540258202 4 - 24.8 0.958372483910296 HCT116-unstranded 5.0 393501 AGGAAAATACCAAATCCAGATTTCTTTGAAGATCTGGAACCTTTCAGAATGACTCCTTTTAGTGCTATTGGTTTGGAGCTGTGGTCCATGACCTCTGACATTTTTTTTGACAACTTTATCATTTGTGCTGATCGAAGAATAGTTGATGATTGGGCCAATGATGGATGGGGCCTGAAGAAAGCTGCTGATGGGGCTGCTG|AGCATCTTCATGATACAGTTAAGAGGAATCTTGACAGCGCCACTTCCCCTCAGAATGGCGATCAACAGAATGGCTACGGGGACCTCTTTCCTGGGCATAAGAAGACTCGCCGGGAGGCCCCTCTGGGAGTTGCCATCTCTTCCAATGGACTGCCTCCAGCCTCCCCCCTCGGTCAGTCTGACAAGCCTTCTGGAGCC 29 1.0 0.7868690577942691 0.472927735705317 Y Y 2.8482315507469305 3.75016368088976 2.8482315507469305 0 0.0 0.0 Y 0.0 N Y 41927 6153 ENSG00000127022 ENSG00000161021 + - 5 5 179157926 179223512 coding intron CANX MAML1 179105629 179159851 + + 0.0 179150020 179192327 + - N - 1.08341006636049 N SA469 1 0.0 1.0 1 0 4 Y Y 0.0 0.0 29 1.46055223112779 1.4015400197690902 1.46055223112779 1.4015400197690902 4 - 4.27586206896552 0.980101382391286 HCT116-unstranded 5.0 393500 TCGAAGAATAGTTGATGATTGGGCCAATGATGGATGGGGCCTGAAGAAAGCTGCTGATGGGGCTGCTGAGCCAGGCGTTGTGGGGCAGATGATCGAGGCAGCTGAAGAGCGCCCGTGGCTGTGGGTAGTCTATATTCTAACTGTAGCCCTTCCTGTGTTCCTGGTTATCCTCTTCTGCTGTTCTGGAA|AGCATCTTCATGATACAGTTAAGAGGAATCTTGACAGCGCCACTTCCCCTCAGAATGGCGATCAACAGAATGGCTACGGGGACCTCTTTCCTGGGCATAAGAAGACTCGCCGGGAGGCCCCTCTGGGAGTTGCCATCTCTTCCAATGGACTGCCTCCAGCCTCCCCCCTCGGTCAGTC 23 0.7831605964775079 0.818190538435885 0.501967512085458 Y Y 3.19863098847112 3.75016368088976 3.19863098847112 0 0.0 0.0 Y 0.0 N Y 41927 6153 ENSG00000127022 ENSG00000161021 + - 5 5 179157926 179223512 coding intron CANX MAML1 179105629 179159851 + + 0.0 179150780 179192327 + - N - 1.08341006636049 N SA469 1 0.0 1.0 1 0 4 Y Y 0.0 0.0 14 1.4236695990286 1.24663296495251 1.4236695990286 1.24663296495251 4 - 8.85714285714286 0.9855187992232192 HCT116-unstranded 5.0 58806 AAACCAGCAAGCAAAATTCCTGCCTTTCTAAATGTGGTGGATATTGCTGGCCTTGTGAAAGGAGCTCACAATGGGCAGGGCCTGGGGAATGCTTTTTTATCTCATATTAGTGCCTGTGATGGCATCTTTCATCTAACAC|ACAGGTGATTTGGCTTCTGCACAGTTAGGAGGAGCACCAAACCGATGGGAGGTTTTGTCAGCCACACCTACAACTATAAAAGATGAAGCTGGTAATCTAGTCCAGATTCCAAGTGCTGCTACTTCAAGTGGGCAGTATGTTCTTCCCCTTCAGAATTTGCAGAATCAACAAATATT 17 0.7020512838091619 0.5443143912355081 0.420841389888432 N Y 3.612079893993029 3.63721963736088 3.612079893993029 2 0.0 0.0 Y 0.0 N Y 7633 5683 ENSG00000138430 ENSG00000172845 + - 2 2 175113426 174830430 coding coding OLA1 SP3 174937175 174771187 - - 0.0 175087761 174820960 - + N - - N SA469 6 0.0 3.47619047619048 1 19 2 N N 0.0 0.0 21 0.96632496099869 1.25400949137235 1.25400949137235 0.96632496099869 4 - - 0.90692944379325 HCT116-unstranded 5.0 131256 TTTTGTTTTACTGCCCTAATGGGAATGTTCAATTCCATATTTGATGGTAGAGTGGTGGCAAAGCTTCCTTTTACCCCTCTTTCTTACATCCAAGGACTGTCTCATCGAAATCTGCTGGGAGATGACACCACAGACTGTTCCTTCATTTTCCTGTATATTCTCTGTACTATGTCGATTCGACA|GGAACGGGAGGATGAAATTGCTACTATGGAGTGCATCAACAATGGCAAGTCCATCTTTGAGGCCCGCTTGGACATTGACATTTCCTGGCAGTGCCTGGAGTATTATGCGGGCTTGGCTGCATCCATGGCTGGTGAACACATCCAGCTCCCAGGTGGATCGTTTGGTTATACCAGAAGAGAACCACTTGGGGTATGTGTGGGAATAGGAG 4 1.0 0.589694766402774 0.299465827417895 Y Y 3.3901562521455086 3.60103760561896 3.3901562521455086 0 0.0 0.0 Y 0.0 N Y 4259 2852 ENSG00000143183 ENSG00000143149 + - 1 1 165796992 165668100 coding coding TMCO1 ALDH9A1 165693530 165631453 - - 0.0 165712404 165652347 - + N - - N SA469 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 7 1.32777475557072 1.27613907063186 1.32777475557072 1.27613907063186 4 - - 0.9642468903432472 HCT116-unstranded 5.0 79054 GTCCCAATGTCTACCATCTCCTGGAAACCTGTTGGCTGTCGGGAAGATTTGGCCAGACACGCCATGCGCCGGCCGCCTGATGCTCCTGCTCCCTCGATGGTGTCCAGGAGAATCCGAGTGCTGGGCACAAAGCTCCAGGAGCGTCCGAGGGCAGGTTTGAGCCTCCCGCTGTCCCTGTCTCGAGTTATGTGGTTGGTC|ACCTCATCCGCGTGGCCGGGCAGGTCCATGGCCAGCTTCTGGGCCTTCACATCCCACACCTTCAGTGTGCTGTCACTGCTGCCGCTGACCAGGAGCCGACTGTCAGCTGACCACGCAATCTGGTACACGGCAGCCACGTGGCCG 4 0.449701882925691 0.5250540773177971 0.902272948139464 Y Y 3.38656252929588 3.49015970162987 3.38656252929588 0 0.0 0.0 Y 0.0 N Y 758 5870 ENSG00000185379 ENSG00000073536 - + 17 17 33448541 33469334 coding intron RAD51D NLE1 33426811 33455772 - - 0.0 33428384 33460358 + - N - 1.04166068976465 N SA469 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 5 0.8483005382812929 0.5532394814878 0.8483005382812929 0.5532394814878 4 - 93.4 0.9388940725958872 HCT116-unstranded 5.0 2236 GGAGGAGAAAAACCAGGCCCAACTGGGGCCGCTATAGCCTCCTGATTGCCATTAGCAAGCAAGCAGCAGACACCTGGAACCTGACCACTATGGGAGGTGAAATTCTGGCCTACCTTCTCACCAACAAACCTGTCAAAAAAAAATGCG|AGAATGCAGGTTCCGGCCATCTGGGGAAGTGGGGCCCGGCACACCCCACCGTTATTCCTTGCCTCTGAATGTGCCTATACCCAGGACCCGGGAGCCCGACCGATGAGGCAGCAGGCCTGGCAGAAGTAGGACTTATGTGACACCCAGAGCCACGGAAACCT 2 0.851690180420436 0.975356641191697 0.0201469150967462 N Y 3.16510289576477 3.44508545943967 3.16510289576477 0 0.0 0.0 Y 0.0 N N 4526 4526 ENSG00000175220 ENSG00000175220 - + 11 11 46722165 46722165 downstream intron ARHGAP1 ARHGAP1 46698630 46698630 - - 0.0 46697539 46701488 + - N - 3.1775569096737 N SA469 1 0.0 1.0 1 0 1 N N 0.0 0.0 6 0.767158747663082 0.96632496099869 0.96632496099869 0.767158747663082 4 - 45.6666666666667 0.954501501076104 HCT116-unstranded 5.0 276051 ACTGAGAAGGTTGTTTTCGAGCAGACAAAGGTCATCGCAGATAACGTGAAGGACTGGAGCAAGGTCGTCCTGGCCTATGAGCCTGTGTGGGCCATTGGTACTGGCAAGACTGCAACACCCCAACAGGCCCAGGAAGTACACGAGAAGCTCCGAGGATGGCTGAAGTCCAACGTCTCTGATGCGGTGGCTCAGAGCACCCGTATCATTTATGGAGG|GACATTTTATTCAGAAATTAAATCATTCAGAGTTCCAGCACTGTCGGGGGTCATCGGGCTCTGTCCACCGCCATAGGCCTAGCATTGTCACCAACGGAGCCATAGAGGGACCTCGGCCCAAGCTGGGGCCTCTTCATTGTCG 7 0.603932746383731 0.924673882153824 0.255897472433515 Y Y 3.65488030998075 3.1510359459945296 3.1510359459945296 1 0.992977417578094 0.0 Y 0.0 N Y 67444 270 ENSG00000111669 ENSG00000010626 + - 12 12 6980112 7023407 coding utr5p TPI1 LRRC23 6976283 6982733 + + 0.0 6979300 6992868 + - N - 0.33642870242326 N SA469 3 0.0 1.6 1 2 2 N Y 0.0 0.0 5 1.08434938371609 0.929442328899504 1.08434938371609 0.929442328899504 4 - 3.2 0.906926118745056 HCT116-unstranded 5.0 276049 AGACACTGACCTTCAGCGCCTCGGCTCCAGCGCCATGGCGCCCTCCAGGAAGTTCTTCGTTGGGGGAAACTGGAAGATGAACGGGCGGAAGCAGAGTCTGGGGGAGCTCATCGGCACTCTGAACGCGGCCAAGGTGCCGGCCGACACCG|GGACATTTTATTCAGAAATTAAATCATTCAGAGTTCCAGCACTGTCGGGGGTCATCGGGCTCTGTCCACCGCCATAGGCCTAGCATTGTCACCAACGGAGCCATAGAGGGACCTCGGCCCAAGCTGGGGCCTCTTCATTGTCGAAGAAGGCCTCTTGCCAGACCAGGATCTGTGGGCGCGGCCAGGCTGGAGGAC 6 1.0 0.579104349005273 0.6297906977083579 Y Y 3.5963175270436003 3.2510393954789 3.2510393954789 3 0.9933080439645948 0.0 Y 0.0 N Y 67444 270 ENSG00000111669 ENSG00000010626 + - 12 12 6980112 7023407 coding utr5p TPI1 LRRC23 6976283 6982733 + + 0.0 6976845 6992868 + - N - 0.335181264105018 N SA469 3 0.0 2.5 1 9 2 N Y 0.0 0.0 10 0.9958310666780392 1.224503385693 1.224503385693 0.9958310666780392 4 - 1.6 0.917536731075268 HCT116-unstranded 5.0 254542 CTGCATCCGAGAGCGGTTCGTGGACAGCAAGAGGGCGCGGGAGCTGCAGGGGTTTCTCGATGGCGTCAAGAAGGGCCAGGAGCAGGTGCTGGGGGACCTGTCCATGATCCTGTGTGACCCCTTCGCCATCAACACGCTGGCACTGAGCACAGTCAGGCACCTGCAGGAGCTGGTCGGCCAGGAGACACTGCCCAG|GGGAGGGCGACCTGTATGCGGAGCGCCGTTCCTGCGACATGGACCGCGGCCAGCCCAGCCTGGAGCCTGCTGCCGCGGCCCCCCGAGCCTCGGGCCGGTGCGTGATCGCGCCCGTGCGCGCTGTGCTCCGCCTGCGCCGCCGGGTGTGTGTCCTACGCAAACGGCGCCTCCTGCAGCCGGGTGGGGGGCCCGACG 5 0.6974991538689411 0.713107766155682 0.17152315202986698 Y Y 3.34954576687694 3.59169073442408 3.34954576687694 0 0.0 0.0 Y 0.00255754475703318 N Y 6972 7373 ENSG00000188986 ENSG00000198113 + - 9 9 140167998 140177093 coding utr5p COBRA1 TOR4A 140149625 140172201 + + 0.0 140160431 140173105 + - N - - N SA469 1 0.0 1.0 1 0 2 N Y 0.0 0.0 5 1.09172591013592 1.0474667516169 1.09172591013592 1.0474667516169 4 - - 0.978454458745766 HCT116-unstranded 5.0 193114 TTTGCCTTTCAATTAGTAAAGCTTTTTGGATCTCCAGGCGTTCCAATGGAATCCTTGTTGCCTGATGACTATGTGGTTCCCCTTGACTGGAAGACACTAAAGATGATCTACTTGCAATGGAAGATGTCAGTGG|AGAAGAAACATTCATGGTGTCTCAAGAGAAAAAATCCACCGAATGAAAGAACGGTATGAACACGATGTTACTTTTCACAGTGTGCTTCATGCAGAAAAGCCAAGCAGAATGAACAGAAACCAGGACAGGAATAATGCATTGCCTTCCAACAATGCCAGATACTGGAATTCCTACACAGAGTTTCCAAACCGGAGGG 3 0.9341002316049029 0.283114786902192 0.6068258420534001 Y Y 3.6272104187567 3.33358506083463 3.33358506083463 1 0.9925039872408292 0.0 Y 0.0 N Y 723 344 ENSG00000244754 ENSG00000139597 + - 13 13 33112970 33007091 coding coding N4BP2L2 N4BP2L1 33006924 32974861 - - 0.0 33012789 32977337 - + N - - N SA469 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 5 1.08434938371609 0.8483005382812929 1.08434938371609 0.8483005382812929 4 - - 0.9627117311321388 HCT116-unstranded 5.0 58767 AAGTGCCACTCTTCAACATCCTGGCTAAGTTCAATGGCATCACTGAGAAGGAATATAAGACTTACAAGGAGAACTTTCTGAAGCGCTTCCAGCTTACCAAGTTGCCTCCATATCTAATCTTTTGTATCAAGAGATTCACTAAGAACAACTTCTTTGTTGAGAAGAATCCAACTATTGTCAATTTCCCTATTAC|GTCTGGTCTTCTCTCGTCTGAGCCCTGAGTACTACGACCTGGCAAGAGCCCACCTGCGTGATGAGGAGAAATCCTGCCCGTGCCTGGCCCAGGAGGGCCCCCAGGGTGACCTGTTGACCAAAACACAGGAGCTGGGCCGTGACTACAGGACCTGTCTGACGATAGTCCAAAAACTGAAGAAGATGGTGGAT 7 1.0 0.654484897253653 0.631081289245833 N Y 3.5110433747387795 3.36079094374226 3.36079094374226 0 0.0 0.0 Y 0.0 N Y 9448 63 ENSG00000168883 ENSG00000115523 + - 2 2 85876406 85925977 coding coding USP39 GNLY 85829979 85912298 + + 0.0 85868241 85922443 + - N - - N SA469 1 0.0 1.0 1 0 1 N N 0.0 0.0 8 1.3941634933492602 1.20237380643348 1.3941634933492602 1.20237380643348 4 - - 0.9805975981117968 HCT116-unstranded 5.0 58555 ATCTGTGGGGCTGTGGTGTCTGTCCGCTTTCAGGAAGACATTATTTCAATATGGAATAAGACTGCCAGTGACCAAGCAACCACAGCCCGAATCCGGGACACACTTCGGCGAGTGCTTAACCTACCTCCCAACACCATTATGGAATACAAAACTCACACCGACAGCATCAA|TGTTGGCTGCATACAGTGACTCCCTTCCAGCGAGTGCAGCGTGGAAAGGAGATCACAAGTGTAAAGCTGAGAATGGAGGAAGCTGAGCAATCCTGCCTCAGCCAGGTGGCCAGGTCAGCAGCGACAGGGAGAAGTCACGTGGTGGTGTGTACCCTTGACACGGTGTGATGAGGGAGGCACTTTACTT 6 0.7379467345505601 0.8310609959817501 0.571701198127494 Y Y 3.4152256374964702 3.64400585547602 3.4152256374964702 1 0.0 0.0 Y 0.0 N N 3811 217 ENSG00000135930 ENSG00000115468 + - 2 2 233448354 233547491 coding upstream EIF4E2 EFHD1 233414762 233470767 + + 0.0 233431924 233460244 + - N - - N SA469 2 1.0 1.14285714285714 1 1 1 N Y 0.0 1.0 7 1.20237380643348 1.3203982291508798 1.3203982291508798 1.20237380643348 4 - - 0.945110275387432 HCT116-unstranded 5.0 276167 GGAAAAGAGCAGAGCGCTTTGGGATTGCCTGATGAAAAGTTCCTGATACTTTCTGTTCTCCAGTGTTTTCCATTTCTCTCCTTCTTCTTGGTCACATATATGCCTAAATGCACAGTCATGTGCCTACGTCCTGCCTCGCAATGAGGGAGCATGTACCCCAG|GCCTGTGCAGTGGGACTGATTGCCGTGGGTGTCGGGGCACAGCTTGTCCTGAGTCAGACCATAATCCAGGGGGCTACCCCTGGCTCTCTGTTGCCAGTGGTCATCATCGCAGTGGGTGTCTTCCTCTTCCTGGTGGCTTTTGTGGGCTGCTGCGGGGCCTGCAAGGAGAACTATTGTCTTATG 9 0.624591816915334 0.8088723345305749 0.451913494206454 N Y 3.66488952858494 3.3593167935948904 3.3593167935948904 0 0.0 0.0 Y 0.0 N Y 2042 11215 ENSG00000205323 ENSG00000135404 + - 12 12 56211540 56123491 utr3p coding SARNP CD63 56146247 56119107 - - 0.0 56151167 56121123 - + N - - N SA469 1 0.0 1.0 1 0 2 N N 0.0 0.0 8 1.09910243655576 1.29826864989137 1.29826864989137 1.09910243655576 4 - - 0.9870114830054008 HCT116-unstranded 5.0 252655 TGAGGAAGATGCTGCGGCATGCGGAAGCATCAGCCATCGTGGAGTACGCATACAATGACAAAGCCATTTTGGAGCAGAGGAACATGCTGACGGAAGAGCTCTATGGGAACACATTTCAGCTTTACA|AGGGATGACCTTTCATCACTTGGAATATGATCAGAGAAGCAGAATTTGCCTAGCTCATTCAGAAGAACATCGTATCATCCTGCCACTGAAGAAAGCTCACATATCCTCTATACATATGAGCTCCCTGCTTTCAAGGGAAGGAAGACTCACTGAACTGCAGACTTTTACATGTCCAGCCTCCCCTTTTAGAGGTGAGAAAGCAGGAC 23 1.0 0.8644609293429971 0.734381667809662 N Y 3.52614339427891 3.49168728493972 3.49168728493972 1 0.992087325420659 0.0 Y 0.0 N Y 1212 1212 ENSG00000080608 ENSG00000080608 + - 9 9 2844241 2844241 coding intron KIAA0020 KIAA0020 2720469 2720469 - - 0.0 2720532 2829774 - + N - 0.0185412210658383 N SA469 2 0.1953125 1.06666666666667 1 1 2 Y N 0.0 0.1953125 15 1.09172591013592 0.944195381739178 1.09172591013592 0.944195381739178 2 - 0.2 0.962303503426091 HCT116-unstranded 5.0 102825 CTCCTCAATAAGCCAGAAAAGGACTGGACGGAGGAGGACCGGGCCCGGGAGAAGGTGCTGATGCAGGAGCTTGTGACCCTCATTGAGCAGCGCAACGCTATCATCAACTGCCTGGATGAGGACCGGCAGAGGGAGGAAGAGGAAGACAAGATGTTGGAAGCCATGATCAAGAAGAA|AGTTTTGATGGCGACGACTTTGATGATGTGGAGGAGGATGAAGGGCTAGATGACTTGGAGAATGCCGAAGAGGAAGGCCAGGAGAATGTCGAGATCCTCCCCTCTGGGGAGCGACCGCAGGCCAACCAGAAGCGAATCACCACACCATACATGACCAAGTACGAGCGAGCCCGCGTGCTGGGCACCCGAG 11 0.588569322760554 0.6983662861367049 0.5994178100837729 Y Y 3.24520654154694 3.0871441702352103 3.0871441702352103 0 0.0 0.0 Y 0.00839113202873409 N Y 2271 4272 ENSG00000100139 ENSG00000100142 + - 22 22 38338829 38437113 coding intron MICALL1 POLR2F 38301664 38348614 + + 0.0 38333799 38352780 + - N - - N SA469 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 9 1.1802442271739702 1.2613860177921798 1.2613860177921798 1.1802442271739702 4 - - 0.946567619696794 HCT116-unstranded 5.0 326530 GATTTTGAGCGATCCCAGCATGGTTCTGGAATGAGCAACAGGTCAACAGCGAAAAGATTTATTTCTGCTCTCAACAACGTTGCTGAAAGAACTTATAATAATATATTTCAATTTCATCAACTTCGGCAGATTGCCAAAGAACTAAACA|TTCAGTATGAAAACCCATGGACAATCCCGAATATGTTGTCAATGACGAGAATTGGCTTGGCCCCAGTTCTGGGCTATTTGATTATTGAAGAAGATTTTAATATTGCACTAGGAGTTTTTGCTTTAGCTGGACTAACAGATTTGGT 11 0.647491361677491 0.446064419948738 0.19284740928219696 N Y 3.4906542151698305 3.4780843434859 3.4780843434859 2 0.993126905934788 0.00340136054421769 Y 0.00340136054421769 N Y 1024 2056 ENSG00000125885 ENSG00000088766 + - 20 20 5975852 6020699 coding intron MCM8 CRLS1 5931298 5986736 + + 0.0 5974341 5990421 + - N - 0.811312285512329 N SA469 1 0.0 1.0 1 0 2 Y N 0.0 0.0 7 0.9146892760598292 1.0474667516169 1.0474667516169 0.9146892760598292 4 - 11.7142857142857 0.983558705816058 HCT116-unstranded 5.0 2778 GGAGGTGCTACAGGGGCAACCTGGTTTCCATCCACAACTTCAATATTAATTATCGAATCCAGTGTTCTGTCAGCGCGCTCAACCAGGGTCAAGTCTGGATTGGAGGCAGGATCACAGGCTCGGGTCGCTGCAGACGCTTTCAGTGGGTTGACGGCAGCCGCTGGAACTTTGCATACTGGGCTGCTCACCAGCCCTGGTCCCGCGGTGGTCACTGCGTGGCCCTGTGTACCCG|AGAGAATGATGCCCCCCATCTGGAGAGCCTAGAGACACAGGCAGACCTAGGCCAGGATCTGGATAGTTCAAAGGAGCAGGAGAGAGACTTGGCTCTGACGGAGGAGGTGATTCAGGCAGAGGGAGAGGAGGTCAAGGCTTCTGCCTGTCAAGACAACTTTGAGGATGAGGAAGCCATGGAGTCGGACC 5 0.0436969124096902 0.86376343604403 0.411335376125932 Y Y 3.12167063759129 3.2818525816052904 3.12167063759129 4 0.0 0.0129883256683681 Y 0.0129883256683681 N Y 141 50 ENSG00000186652 ENSG00000156575 + - 11 11 57158130 57148623 coding intron PRG2 PRG3 57154267 57144242 - - 0.0 57155227 57147280 - + N - 6.0903180367558 N SA469 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 10 1.56382360100551 1.04009022519706 1.56382360100551 1.04009022519706 4 - 0.4 0.907553637697857 HCT116-unstranded 5.0 273640 AAGGACAAGATATGGAAACAGAAGCTCACCAGAACAAGCTAGAAGAAATGATCAATGAGCTAGCAGTGGCGATGACAGCTGTAAAGCACGAACAGGAATACATGGAAGTCCGGGAGAGAATACACAGAGCCA|CCAGATTCTTTGGATCGGAGGCAGGAATCCTGGAGAAGATGTTGAGAGGTTTAAGCAACAAGGTGGGAACATCATTGTGGCCACTCCAGGCCGCTTGGAGGACATGTTCCGGAGGAAGGCCGAAGGCTTGGATCTGGCCAGCTGTGTGCGATCCCTGGATGTCCTGGT 9 0.5684692499100831 0.7225141929417901 0.6081904266430811 Y Y 3.46657804679541 3.41588798490577 3.41588798490577 0 0.0 0.0 Y 0.0 N Y 17332 1354 ENSG00000086598 ENSG00000111364 + - 12 12 124083116 124105482 coding coding TMED2 DDX55 124069078 124086624 + + 0.0 124074996 124092147 + - N - - N SA469 1 0.0 1.0 1 0 1 N Y 0.0 0.0 5 0.8999362232201541 1.12123201581527 1.12123201581527 0.8999362232201541 4 - - 0.9795996994619008 HCT116-unstranded 5.0 329588 AAAGTGCGGACTGGGTATCAGACTGGTCCAGTAGACCCGAAAACATTCCACCCAAGGAGTTCCACTTCAGACACCCTAAACGTTCTGTGTCTTTAAGCATGAGGAAAAGTGGAGCCATGAAGAAAGGGGGTATTTTCTCCGCAGAATTTCTGAAGGTGTTCATTCCATCTCTCTTCCTTTCTCATGTTTTGGCTTTGGGGCTAG|GAGCGATCGTCTTCTGATCAAAGGAGGTAAAATTGTTAATGATGACCAGTCGTTCTATGCAGACATATACATGGAAGATGGGTTGATCAAGCAAATAGGAGAAAATCTGATTGTGCCAGGAGGAGTGAAGACCATCGAGGCCCACTCCCGGATGGTGATCCCCGGAGGAATTGACGTCCA 8 0.849835902447061 0.9277833254460408 0.800790208254698 Y Y 3.0950872492996098 3.57167229721571 3.0950872492996098 0 0.0 0.0 Y 0.0 N Y 1394 2535 ENSG00000104765 ENSG00000092964 + - 8 8 26363152 26515694 coding utr5p BNIP3L DPYSL2 26240414 26371791 + + 0.0 26265892 26439485 + - N - - N SA469 1 0.0 1.0 1 0 1 N Y 0.0 0.0 8 1.29826864989137 1.35728086125007 1.35728086125007 1.29826864989137 4 - - 0.960130535861698 HCT116-unstranded 5.0 298838 GACAACAACCGCTATTGCACCTTGGAATTTCCTGTGGAGGTGAACACAGTACTACATGGCTTTGCCGGCTACTTTGAGACTGTGCTTTATCAGGACATCACTCTGAGTATCCGTCCAGAGACTCACTCTCCTGGGATCAGCCCATAACGGTACGTGAAGGCCAAACCATCTGTGTGCGTTTCTGGCGATGCAGCAATTCCAAGA|AGATCTGACAGGATGGCATCTGATGACTTTGACATAGTGATTGAGGCCATGCTGGAAGCTCCCTATAAAAAAGAAGAGGATGAGCAACAAAGGAAAGAAGTTAAAAAGGATTATCCTAGCAATACCACCAGCAGCACCAGCAACAGTGGCAATGAGACCAGT 3 1.0 0.206923865771908 0.450971039298645 Y Y 3.71720464963688 3.36038036858832 3.36038036858832 0 0.993843980220002 0.0 Y 0.0 N Y 13308 3096 ENSG00000100462 ENSG00000100461 + - 14 14 23398794 23388393 coding utr5p PRMT5 RBM23 23389720 23369854 - - 0.0 23390197 23380612 - + N - - N SA469 1 0.0062111801242236 1.0 1 0 1 Y Y 0.0 0.0062111801242236 5 0.936818855319341 1.15811464791446 1.15811464791446 0.936818855319341 4 - - 0.900471301164998 HCT116-unstranded 5.0 132172 GTCAGCCCTGACAAAGGTCAGCTAGCCCCTTGAGGACATCAGCTTTGGCCTCAGGGTCCTAATGGCAGCAGAACCACTGACAGAGCTAGAGGAGTCCATTGAGACCGTGGTCACCACCTTCTTCACCTTTGCAAGGCAGGAGGGCCGGAAGGATAGCCTCAGCGTCAACGAGTTCAAAGAGCTGGTTACCCAGCAGTTGCCCCATCTGCTCAAGGATG|CTCAGGAATTCAGTGATGTGGAGAGGGCCATTGAGACCCTCATCAAGAACTTTCACCAGTACTCCGTGGAGGGTGGGAAGGAGACGCTGACCCCTTCTGAGCTACGGGACCTGGTCACCCAGCAGCTGCCCCATCTCATGCCGAGCAACTGTGGC 3 0.7463859072923259 0.33937496290102104 0.6975850570605939 Y Y 3.64231043829683 3.49168728493972 3.49168728493972 0 0.0 0.0 Y 0.0 N Y 2272 3038 ENSG00000189171 ENSG00000189334 + - 1 1 153606873 153589462 coding coding S100A13 S100A14 153591263 153586731 - - 0.0 153598796 153587857 - + N - - N SA469 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 7 1.1064789629756 1.01058411951771 1.1064789629756 1.01058411951771 4 - - 0.9492831447185208 HCT116-unstranded 5.0 211674 GGAGCTGCTGGTGTTAGAGCAGTTCCTGACCATCCTGCCCCAGGAGATCCAGAGCAGGGTGCAGGAGCTGCATCCGGAGAGCGGCGAAGAAGCGGTGACCCTTGTGGAGGATATGCAGAGAGAGCTTGGGAGACTGAGAC|AACAGGGTTAAAGCTCAAAAACGACACTGAAAATCATCAGCCTGTGTCTCTTTCTGACTTAGAAATACAAGCATCAGCAGGCGTCATATCAAAAAAGGCCAAAGTAAAAGTTCCCCAGAAAACAGCAGGCAAAGAAAATCATTTTG 5 0.256466065827759 0.98044217373312 0.628373301029486 Y Y 3.16782203514404 3.30960217841604 3.16782203514404 3 0.992882030861125 0.0 Y 0.0 N Y 6880 435 ENSG00000006194 ENSG00000162086 + - 16 16 3351401 3368852 coding intron ZNF263 ZNF75A 3313743 3355406 + + 0.0 3334205 3367190 + - N - 0.135717343228698 N SA469 1 0.0 1.0 1 0 1 N Y 0.0 0.0 6 0.730276115563896 0.63438127210601 0.730276115563896 0.63438127210601 4 - 3 0.968012587461872 HCT116-unstranded 5.0 1941 CTGACCTTGGAAGTGGGACGGGGTCCTGCAGCGGGTCCTTCCGGCGGGTGACATTCAGCCGGCGGTTCGGGGCGACGGACTCTCCATTCCAGAACCATGGCCCAATTTGTCCGTAACCTTGTGGAGAAGACCCCGGCGCTGGTGAACGCTGCTGTGACTTACTCGAAGCCTCGATTGGCCACATTTTGGTACTACGCCAAGGTTGAGCTGGTTCCTCCCACCCCTGCTGAGATCCCTAGAGCTATTCAGAGCCTGAAAAAAATAGTCAATAGTGCTCAGACTGGTAGCTTCAAACAGCTCACAGTTAAG|GATGAGCAATTCTTAGGTTTTGGCTCAGATGAAGAAGTCAGAGTGCGAAGTCCCACAAGGTCTCCTTCAGTTAAAACTAGTCCTCGAAAACCTCGTGGGAGACCTAGAAGTGGCTCTGACCGAAATTCAGCTATCCTCTCAGATCCATCTGTGTTTTCCCCTCTAAATAAATCAGAGACCAAATCTGGAGATAAGATCAAGAAGAAAGA 4 2.72321767294658e-16 0.700090632991759 0.467754409020463 N Y 3.4859341365944703 3.53465553479678 3.4859341365944703 0 0.0 0.0 Y 0.0 N Y 5772 9452 ENSG00000167283 ENSG00000118058 + - 11 11 118302211 118397539 coding coding ATP5L MLL 118271869 118307205 + + 0.0 118277812 118339490 + - N - - N SA469 1 0.0 1.0 1 0 1 Y N 0.0 0.0 9 0.7081465363043841 1.07697285729625 1.07697285729625 0.7081465363043841 4 - - 0.942568193448479 HCT116-unstranded 5.0 129224 GGTCAGGTCCCTGCAGCAGTACCGATGGTAGCAGGTCCCGCAGCAGAAGGTGAAGAACTCGCAGTTAAACCCCGGATGCCAGGAGCCATTCCGGTCCAGGTACCACAGGCAGTCCTCGCCGGCCAGCA|CTTGAACTTTTTAGTTCCTTGTAACCACTTAGCCCTGCCCTTTTCAGACTGAAGCTAGTTCTCTTTGGCCAAAGACAGGAGACAAAATATGGTCTAGAGTTTCTGTCAACATGTACTGGCCTCCAACAGATCTTTTTTCTTCCTGCTGACACTGGACACAGTC 9 0.343959138273026 0.8651443093707509 0.5740649920190971 Y Y 3.37439388519607 3.27192306858781 3.27192306858781 1 0.0 0.0 Y 0.0 N N 627 10850 ENSG00000198892 ENSG00000198700 - + 1 1 201861434 201853422 coding utr3p SHISA4 IPO9 201857808 201798269 + + 0.0 201858573 201848062 - + N - 11.1339355619095 N SA469 1 0.506849315068493 1.0 1 0 3 N Y 0.0 0.506849315068493 5 0.863053591120968 1.07697285729625 1.07697285729625 0.863053591120968 4 - 8.8 0.99036751745489 HCT116-unstranded 5.0 317547 GAAGAATTATGAGCGGCTTCAGAAAGCTCTGGATAGTGTGATGTCTATTCGGGAGATGACCCAGGGCTCATATTTGGAAATCAAGAAACAGATGGACAAGTTGGATCCCCTGGCCCATCCTCTCCTGCAGTGGATCATCTCTAGCAACAGGTCACACATTGTCAAACTACCTCTCAGCAGG|GACCTCAGCAGCCATGTCGAAGCCCCATAGTGAAGCCGGGACTGCCTTCATTCAGACCCAGCAGCTGCACGCAGCCATGGCTGACACATTCCTGGAGCACATGTGCCGCCTGGACATTGATTCACCACCCATCACAGCCCGGA 7 1.0 0.5326034999360539 0.6411355651365059 Y Y 3.4482245215427 3.5791208627401603 3.4482245215427 8 0.0 0.0 Y 0.003076923076923311 N Y 1418 243714 ENSG00000137817 ENSG00000067225 + - 15 15 72565340 72524164 coding coding PARP6 PKM 72533522 72491370 - - 0.0 72543548 72511451 - + N - - N SA469 2 0.0 1.45454545454545 1 5 2 Y Y 0.0 0.0 11 1.27613907063186 0.892559696800317 1.27613907063186 0.892559696800317 4 - - 0.9017617434312908 HCT116-unstranded 5.0 102822 CCCACCCCCGCTGCCCCCCAGCCCCTGCAGATGGGGCCCTGCGCCTACGAGATCAGGCAGTTCCTGGACTGTTCCACCACTCAGAGTGACCTGTCCCTGTGTGAGGGCTTCAGCGAGGCCCTGAAGCAGTGCAAGTACTACCATG|TTTCCCAGACAGTCCTGGCCCAGCTGGATGCACTGCTGGTCTTCCCAGGCCAAGTGGCTCAACTCTCCTGCACGCTCAGCCCCCAGCACGTCACCATCAGGGACTACGGTGTGTCCTGGTACCAGCAGCGGGCAGGCAGTGCCCCTCGATATCTCCTCTACTACCGCTCGGAGGAGGATCACCACCGGCCTGCT 14 0.862118906716097 0.6001661944376021 0.493920768717883 Y Y 3.74656995804013 3.39487633072086 3.39487633072086 0 0.0 0.0 Y 0.0 N Y 3076 60 ENSG00000250479 ENSG00000128218 + - 22 22 24110630 24096655 coding coding CHCHD10 VPREB3 24108021 24094930 - - 0.0 24108315 24095385 - + N - 19.9103655077397 N SA469 2 0.0 1.46153846153846 1 6 2 Y Y 0.0 0.0 13 1.13598506865495 1.29089212347153 1.29089212347153 1.13598506865495 4 - 0.153846153846154 0.935262853906797 HCT116-unstranded 5.0 816 GATGAACTTCTTTTTCCAGGAATGAAGTCCAGAGAGATAGATTTGTCTAAGAGCTTCATGGCTCAGCCGCAGGTCAATCCCGTCCGGAGTGACCGTGAACTGAAAGGCCACAGCTTGGTGAGCTTCTGCCATCTTCAGAGAGT|ACCTTCTCCAGTCGAATTCTCTCTCCACACGCAAGGTCTAGTTCATTTCCAATTAAGATCAGGTCTTCAGAGGTCACCTTCCACTGGCGGCTGGCAAAGTGCACCACGGCAAAGAGCCTGCCATACTGCCCCGTGACGATCATCT 6 0.555754529154046 0.690451343006354 0.912339814971211 N Y 3.63080414160633 3.56695221864035 3.56695221864035 1 0.0 0.0 Y 0.0 N Y 6906 1138 ENSG00000110090 ENSG00000197345 - + 11 11 68611878 68671303 utr5p utr3p CPT1A MRPL21 68522088 68658744 - - 0.0 68582955 68663983 + - N - 0.294916424420517 N SA469 1 0.0 1.0 1 0 1 Y N 0.0 0.0 10 1.1064789629756 1.1507381214946202 1.1507381214946202 1.1064789629756 4 - 49 0.9419911526422622 HCT116-unstranded 5.0 2693 AGCCACTCCTCGGAAAGGATCTTGTTCGAGTAGAAGCCACAGTCATTGAAAAGACAGAATCATGGCCAAGAATCATTATGAGATTCAGGAAAAGGAAAAACTTCAAGAAGAAAAGAA|GTACTCTCTGAAGATGGCAGAAGCTCACCAAGCTGTGGCCTTTCAGTTCACGGTCACTCCGGACGGGATTGACCTGCGGCTGAGCCATGAAGCTCTTAGACAAATCTATCTCTCTGGACTTCATTCCTGGAAAAAGAAGTTCATCAGATTCAAGAACGGCATCATCACTGGCGTGTACCCGGC 7 0.7485530688353491 0.328557649608133 0.558543656519736 N Y 2.85380751765302 3.67952553980864 2.85380751765302 0 0.0 0.0 Y 0.0 N Y 1138 6906 ENSG00000197345 ENSG00000110090 + - 11 11 68671303 68611878 coding utr5p MRPL21 CPT1A 68658744 68522088 - - 0.0 68660358 68582955 - + N - - N SA469 1 0.0 1.0 1 0 1 N N 0.0 0.0 6 0.678640430625034 0.8409240118614559 0.8409240118614559 0.678640430625034 4 - - 0.9191603428434107 HCT116-unstranded 5.0 131687 CGTTGGGGGCATCAGGTCAAGCTGGATGACCTCTTTGTGACAGGCCGCAATGTCCGCTACGTCCACATCCCAGATGACGTGAACATCACCTCGACCATTGAGCAGCAGCTGCAGATTATCCATCGGGTGCGAAACTTTGGTGGCAAGGGCCAAGGCCGGTGGGAATTTCCCCCAAAAAACT|GACCGCACCTGTGAAATCGTTGAGGACACAGAATCCAGCCGGATGGTTAAGAAGATGAAGAAGCGCATCTGCCTCGTCCTGGACTGCCTCTGTGCTCATGACTTCAGCGATAAGACCGCTGACCTCATCAACCTGCAGCACTACGT 1 1.0 0.357463468223546 0.404181220164046 Y Y 3.14112001334619 3.6852786881538906 3.14112001334619 1 0.993171566989642 0.0 Y 0.0 N Y 1419 1903 ENSG00000181817 ENSG00000196182 + - 1 1 36863493 36851497 coding coding LSM10 STK40 36856839 36805225 - - 0.0 36859367 36821034 - + N - - N SA469 1 0.0 1.0 1 0 1 N Y 0.0 0.0 5 1.11385548939544 0.944195381739178 1.11385548939544 0.944195381739178 4 - - 0.953444237753192 HCT116-unstranded CGHSA0326 5.0 326399 CCATCCTGTTCATGGCACCCTTGCAACTGTGGGATCTGATGGTAGATTCAGCTTCTGGGACAAAGATGCCAGAACAAAACTAAAAACTTCGGAACAGTTAGATCAGCCCATCTCAGCTTGCTGTTTCAATCACAATGGAAACATATTTGCATACGCTTCCAGCTACGACTGGTCAA|AGGCTGACCCCGCACTACATCTACCCACCAGCCATCGTGCAGCCCAGCGTGGTGATCCCAGCCGCCCCTGTCCCGTCGCTGTCCTCGCCCTACATTGAGTACACGCCGGCCAGCCCGGCCTACGCCCAGTACCCACCGGCCACCTATGACCAGTACCCATACGCC 9 0.8445910840685681 0.526730756972409 0.5654354273042839 Y Y 3.7574444125448494 3.4865659787802405 3.4865659787802405 0 0.0 0.0 Y 0.0 N Y 3322 4453 ENSG00000101146 ENSG00000132819 + - 20 20 55954267 55984389 coding intron RAE1 RBM38 55926066 55966463 + + 0.0 55949857 55982599 + - N - 0.617037275754646 N SA469 1 0.0 1.0 1 0 2 N Y 0.0 0.0 6 0.7745352740829201 1.23925643853267 1.23925643853267 0.7745352740829201 4 - 156.666666666667 0.990263580524085 HCT116-unstranded 5.0 29885 GGGACTGAGGAAGGCCTTGAAGGGTGCCTGGGAGGGGGCTGCACAGCCCGGGGAGGTGTCGTCCTCGCTGGACAGGGGGGCATGTGAGCACAGCAGGTCCTCCAGGGAGGATGTCTGCAGTTGGGAGGGCGTGTCGGCAACACTCGTGAACCTTCCGAAATCTGGAA|GGTGTCCAGCCCCAGGGCGTAGGCTTCCAGGCCGGTCTGCTCGCGGCCGGCGCGCTCGTCCTGCAGGTAGGTCCACGTCTGCCGGCCCCTCTCGCAGTTGAGTCGCCAGCGGCCGAGGTCGGTGGCGGGCTCGGTCTTGTAGGGGCCCCCTCGGCGCCG 8 0.957138591021984 0.44105600448108895 0.6591555923667121 Y Y 3.6491271616355 3.31336373513502 3.31336373513502 0 0.0 0.0 Y 0.00305810397553519 N Y 112 5430 ENSG00000160284 ENSG00000160285 - + 21 21 47604390 47648738 coding coding C21orf56 LSS 47581062 47608360 - - 0.0 47588572 47648348 + - N - 1.58457641182535 N SA469 1 0.0 1.0 1 0 1 N Y 0.0 0.0 10 1.01796064593755 1.19499728001365 1.19499728001365 1.01796064593755 4 - 25.5 0.976604993145557 HCT116-unstranded 5.0 78969 GTGAAGGGGACACCCTTTGAGACCCCGGACCAGGGCAAGGCGAGGCTGCTAACCCACTGGGAGCAGATGGATTATGGGGTCCAGTTCACGGCCTCTCGGAAGTTCTTGACCATCACACCCATCGTGCT|GCGCAATGTTCAGCGTATTTGAGGAAATCACAAGAATTGTAGTTAAGGAGATGGATGCTGGAGGGGATATGATTGCCGTTAGAAGCCTTGTTGATGCTGATAGATTCCGCTGCTTCCATCTGGTGGGGGAGAAGAGAACTTTCTTTGGATGCCGGCACTACACAACAGGCCTCACCCTGA 5 0.9523643042503442 0.641402884093482 0.819558150635641 Y Y 3.71720464963688 3.56488607910057 3.56488607910057 0 0.0 0.0 Y 0.0 N Y 646 198 ENSG00000172057 ENSG00000073605 + - 17 17 38083854 38077313 coding utr5p ORMDL3 GSDMB 38077294 38060848 - - 0.0 38079365 38073574 - + N - - N SA469 1 0.0 1.0 1 0 1 N Y 0.0 0.0 6 1.1286085422351102 0.929442328899504 1.1286085422351102 0.929442328899504 4 - - 0.976111719908744 HCT116-unstranded 5.0 130055 GGGTTTGTCGGCAGGTAAACAGACCACTGGAAATGCTGCTCAGAAGGTCCCTGGTGGCCAGTTACATTGCAGCCAATGCTGACTGGGTAACCTTCAGCTCTAAACAGTGGTCCTTTCTGAACTGTTACTTCTCTCTGGCCAATGCTGAGCTTAG|CATCCATCTTCACAGTTATAAAAACGGGCTTGGAGTGGATCTCTGCCTCCTTCTGCCAGGAACCTGTTGGTGACTTCACCCATGGAGTCACGGAACAGTAGTAGTTGCCAAAGTCCTGGTCCTCGGA 6 0.348457333610162 0.618622696255146 0.8858429414099259 Y Y 3.58374765535968 3.6925594198089904 3.58374765535968 0 0.0 0.0 Y 0.0 N Y 326 7914 ENSG00000134256 ENSG00000134247 - + 1 1 117579167 117532980 coding coding CD101 PTGFRN 117544382 117452679 + + 0.0 117552472 117527607 - + N - 1.44680935357679 N SA469 1 0.0 1.0 1 0 1 N Y 0.0 0.0 6 0.826170959021781 0.8335474854416179 0.8335474854416179 0.826170959021781 4 - 51.6666666666667 0.948986267012237 HCT116-unstranded 5.0 37139 TCAAGTGCTGGGGCCGGCAGTGGAGAGTTCCACGTGTACAGACATCTGCGCCGGAGAGAATATCAGCGACAGGACTACATGGATGCCATGGCTGAGAAGCAAAAATTGGATGCAGAGTTTCAGAAAAGACTGGAAAAGAATAAAATTGCTGCAGAGGAGCAGACCGCAAAGCGCCGGAAGAAGC|GCCTGGCTCCCACCATGAGTGCTGAGCTTAACGTGCCTATCGACCCCTCTGCTCCTGCCTGCCCTGAGCCCGGCCATAAGGGCATGGATTACCGGGACTGGGTCCGCCGCAGCTACCTGGAACTGGTCACCTCTAACCACCACTCGGTACAGGCCCTGTCGTGGCGGAAGCTCTACCTGAGCAGGGC 8 1.0 0.8472724276086091 0.6412881528154101 Y Y 3.32482083146235 3.69272725367833 3.32482083146235 0 0.994579827021973 0.00268817204301075 Y 0.00268817204301075 N Y 1892 2587 ENSG00000128563 ENSG00000160991 + - 7 7 102067123 102097268 coding utr5p PRKRIP1 ORAI2 102004319 102073553 + + 0.0 102045130 102079391 + - N - - N SA469 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 10 1.21712685927316 1.58595318026503 1.58595318026503 1.21712685927316 4 - - 0.9905213542652048 HCT116-unstranded 5.0 207966 GCGGTGACCTTTGACGACGTGGCTGTGGACTTCACCCAGGAGGAATGGACTTTACTGGACCCATCTCAGAGAGACCTCTACAGAGATGTGATGCTGGAAAACTACGAGAACCTGGCCTCAGTAGAATGGCGACTTAAAACCAAAGGGCCAGCACTTCGGCAGGATAGATCTTGGTTCAGAGCATCAAATGAGACACAGAC|GGGCACACAGGGCAGACGGGACCTAGATGACGACAGATCTGCGTGTTTGGGCTCTGTTTGAAACAGACCTCAGCCAGAGTCTTGAAGAGCAGAACCCGGAGTGTTGAAGTCACAAGAGATCAACATCCCTACGGTGTGAAA 4 1.0 0.441064878138997 0.4357212410645169 Y Y 3.45400817511148 3.25360004855864 3.25360004855864 4 0.0 0.00292397660818733 Y 0.00292397660818733 N Y 1002 982 ENSG00000170100 ENSG00000205014 + - 16 16 89295363 89302402 coding downstream ZNF778 AC009113.1 89284118 89284120 + + 0.0 89289691 89291963 + - N - - N SA469 1 0.4895833333333329 1.0 1 0 1 N Y 0.0 0.4895833333333329 5 0.936818855319341 0.7081465363043841 0.936818855319341 0.7081465363043841 4 - - 0.9702037131791892 HCT116-unstranded 5.0 239761 AAGCTATCTTCTGTATGCATGGGACAGGAAGATAATATGACCTCAGTAACAAACCACTTTTCTCAATCAAAGCTGGACTCCCCAGAGGAATTGGAACCTGACAGAGAAGAGGATTCTTCTAGCTGTATTGATATTCAAGAAGTTCTTTCTTCATCAGAATCAGATTCATGCAAT|AGGGTGGACCCAGCAGATCCGTCCGTGGAGTCTCCAGGAGTGGAGCCCCGGGCGCCCCTACACCCTCCGACACGCCGGATCCGGCCCAGCCGCGCCAAGCCGTAAAGGGCTCGAAGGCCGGGGCGCACCGCTGCCGCCAGGGTCATGGAGGGCGCGCTCGCAG 5 0.834446998029628 0.688885558124945 0.29652686531471195 Y Y 3.16203838157526 3.36654409208751 3.16203838157526 1 0.993883181471667 0.0 Y 0.0 N Y 1450 763 ENSG00000070950 ENSG00000180914 + - 3 3 9005457 8811314 coding utr5p RAD18 OXTR 8817088 8792094 - - 0.0 8940578 8810015 - + N - - N SA469 1 0.0 1.0 1 0 1 N Y 0.0 0.0 8 1.18762075359381 1.04009022519706 1.18762075359381 1.04009022519706 4 - - 0.950003646985542 HCT116-unstranded 5.0 276165 GTGAGGGGGCCTCTCTAGCTTGCGGCCTGTGTCTATGGTCGGGCCCTCTGCGTCCAGCTGCTCCGGACCGAGCTCGGGTGTATGGGGCCGTAGGAACCGGCTCCGGGGCCCCGATAACGGGCCGCCCCCACAGCACCCCGGGCTGGCGTGA|GAATCGTCGGGGTAGTGACTCCGAGAAACGAAGCTTGGATAGTCGGGGAGAGACAACAGGGAGTGGGCGAGCCATCCCCATCAAACAGAGCTTCCTACTAAAACGAAGTGGCAATTCCTTGAACAAAGAATGGAAGAAGAAATATGTAACCCTGTCCAGTAATGGCTTTCTACTCTACCACCCCAGTATTAACGATTACATCCACAGTACCCA 3 0.3674461094766179 0.563291508724826 0.302414942939406 Y Y 3.2464126028593703 3.59681204058356 3.2464126028593703 1 0.993395627324685 0.0 Y 0.0 N Y 10907 1198 ENSG00000135446 ENSG00000135439 + - 12 12 58149796 58135940 utr5p coding CDK4 AGAP2 58142034 58118981 - - 0.0 58145958 58125425 - + N - - N SA469 1 0.0 1.0 1 0 1 N Y 0.0 0.0 5 0.936818855319341 1.36465738766991 1.36465738766991 0.936818855319341 4 - - 0.924000069641428 HCT116-unstranded 5.0 335926 GCTACATGGACTTTCCTAAAGTTGGGGGTATGCCTTTTTCTGTGTATGGGAATGCAATGATTCCTCCAGTAGCACCTATCCCTGATGGTGCTGGAGGACCCATATTTAATGGCCCTCATGCTGCAGACCCTTCTTGGAACTCACTGATAAAGATGGTTTCCAGCTCCACGGAAAATAATGGCCCTCAAAC|GGCTCACTTATCTAAAGAATATGAGGAGGCTAATTTCAGAGCTATATGTGCGAGATAACTGCCACCCTTTCAAAGCCACTGTGTTGGTTTGGATTCAGCTTCCAATGTGGATCTTCATGTCTTTTGCTCTCCGGAATTTAAGCACGG 10 0.921089624518528 0.617104079050057 0.24639471107629105 Y Y 3.62088820895798 3.46910819465161 3.46910819465161 0 0.0 0.0 Y 0.0 N Y 10374 592 ENSG00000132466 ENSG00000163626 + - 4 4 74124515 73935472 coding coding ANKRD17 COX18 73939093 73921797 - - 0.0 73942657 73931130 - + N - - N SA469 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 13 1.26876254421202 0.8778066439606421 1.26876254421202 0.8778066439606421 4 - - 0.973874574739074 HCT116-unstranded 5.0 131318 TTGGGGGATGGCAGATGAGGAAGTCCTAGGGCCAAGGAGCCGCTGTGGCTGGTAGGCACAGGGACCCTCCGTAGTGTGCCTGGGGCCTGGGCTGGCTGGGCCAGGCAGGGCTTGGGACTCCGTTTCTTCTTTTTGTCATCCATTGGGCGCTGGCTGGGCCTCAGGCC|TCCTCGCGCAGCTCATACTGCTCAATCAGCTTCTTGAGCCTCTCAGCCAGCTCCATGTTCTCTTGGCGCAGCTTGGAGTTGCGCTCATTGTGCTGTTCCATCTGCAGCTGAATGTCATTCAGTGTCACCTGGAAGTGCGAGGTCACCTCCTTGCGCTTCTCCTCCTCCTC 9 0.7930139693966651 0.93846693005434 0.835860963723071 Y Y 3.20807114562183 3.50888394924316 3.20807114562183 2 0.9940296920951 0.0 Y 0.0 N Y 363 4268 ENSG00000160050 ENSG00000084652 - + 1 1 32670988 32663886 utr5p coding CCDC28B TXLNA 32665987 32645287 + + 0.0 32667514 32655850 - + N - 0.817403580342209 N SA469 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 10 1.05484327803674 1.01796064593755 1.05484327803674 1.01796064593755 4 - 25.6 0.966172213845364 HCT116-unstranded 5.0 225345 CACTTCGCCTGCCGCGGTCGGGTCCGCGGCCTGCGCTGTAGCGGTCGCCGCCGTTCCCTGGAAGTAGCAACTTCCCTACCCCACCCCAGTCCTGGTCCCCGTCCAGCCGCTGACGTGAAGATGAGCAGCTCAGAGGAGGTGTCCTGGATTTCCTGGTTCTGTGGGCTCCGTGGCAATGAATTCTTCTGTGAA|ACAACATGCAGGCCATCTATGTGGCCTTGGGGGAGGCAGTAGAGCTGCCATGTCCCTCACCACCTACTCTACATGGGGACGAACACCTGTCATGGTTCTGCAGCCCTGCAGCAGGCTCCTTCACCACCCTGGTAGCCCAAGTCCAAGTGGGCAGGCCAGCCCCAGACCCTG 10 0.9445700706849828 0.9098751071930992 0.720732046096796 N Y 3.418448637985509 3.5597647729410897 3.418448637985509 1 0.0 0.0 Y 0.0 N Y 11483 69 ENSG00000204435 ENSG00000204424 + - 6 6 31638120 31685581 coding coding CSNK2B LY6G6F 31633013 31674640 + + 0.0 31634680 31675235 + - N - - N SA469 1 0.0 1.0 1 0 1 N N 0.0 0.0 11 1.41629307260877 1.224503385693 1.41629307260877 1.224503385693 4 - - 0.983587814839638 HCT116-unstranded 5.0 254350 GCTGACGGCCTGGTCAAGGTGCAGGTGGCTTTGGGGAACATTTCCAGCAAGAGGGAGAGGGTGAAGATTCTCTACAAAAAGATTGAAGATCTGATCAAGTACCTGGATCCTGAGTACATCGACCGCATTGCCATACCTGATGCCTCTAAGCTGCAATTCATCCTAGCA|GTGGGCAGCGAGAGTCACAGACAAGACAGCAAGCAGGATGGAGCACTACCGGAAAGCTGGCTCTGTAGAGCTCCCAGCGCCTTCCCCAATGCCCCAGCTACCTCCTGATACCCTTGAGATGCGGGTCCGAGATGGCAGCAAAATTCGCAACCTGCTG 4 0.9785787656771692 1.0 0.0215451349935253 Y Y 3.5231187328827502 3.20075056117338 3.20075056117338 0 0.0 0.0 Y 0.0 N Y 2188 2516 ENSG00000137100 ENSG00000164967 + - 9 9 34620515 34612101 coding utr5p DCTN3 RPP25L 34613548 34610483 - - 0.0 34617882 34611329 - + N - - N SA469 1 0.0 1.0 1 0 1 N Y 0.0 0.0 8 1.27613907063186 0.9589484345788531 1.27613907063186 0.9589484345788531 4 - - 0.94626510985952 HCT116-unstranded 5.0 376823 GCCAGGAGCTAACCATGAAGGCTCAG|GGCGTCCCCCTGGATACCAGTAAACTGTCCACTGACCAGCGGTTACCCCCATACCCATACAGCTCCCCAAGTCTGGTTCTGCCTACCCAGCCCCACACCCCAAAGTCTCTACAGCAGCCAGGGCTGCCCTCTCAGTCTTGTTCAGTGCAGTCCTCAGGTGGGCAGCCCCCAGGCAGGCAGTC 3 3.68554773789643e-06 0.417624449183378 0.7902764662490541 Y Y 3.54346518960165 3.58064844605001 3.54346518960165 0 0.961722488038277 0.157894736842105 Y 0.157894736842105 N N 5117 2123 ENSG00000143570 ENSG00000160741 + - 1 1 153940188 153931101 coding coding SLC39A1 CRTC2 153931575 153920145 - - 0.0 153935005 153921860 - + N - - N SA470 1 0.0 1.0 1 0 6 N Y 0.0 0.0 7 0.9198789628036792 0.8356646915610891 0.9198789628036792 0.8356646915610891 4 - - 0.982713039304326 HCT116-unstranded CGHSA0331 10.0 376822 GTAGTGAGACCCTCGCGAGGTCTGAGAGTCACTGGAGCTACCAGAAGCATCATGGGGCCCTGGGGAGAGCCAGAGCTCCTGGTGTGGCGCCCCGAGGCGGTAGCTTCAGAGCCTCCAGTGCCTGTGGGGCTGGAGGTGAAGTTGGGGGCCCTGGTGCTGCTGCTGGTGCTCACCCTCCTCTGCAGCCTGGTGCCCATCTGTGTGCTGCGCCGGCCAGGAGCTAACCATGAAGGCTCAG|GGGACTCCTCTCCAGGTTTCTCTAAGGAGATTGCAGCAGCCCTGGCCGGAGTGCCTGGCTTTGAGGTGTCAGCAGCTGGATTGGAGCTAGGGCTTGGGCTAGAAGATGAGCTGCGCATGGAGCCACTGGGCCTGGAAGGGCTAAACATGCTGAGTGACCCCTGTGCCCTGCTGCCTGATCCTGCTGTGGAGGAGTCATTCCGCAGTGACCGGCTCCAATGAGGGCACC 47 0.966552209467856 0.605071265183412 0.586139286870803 Y Y 3.69209541149257 3.5310618119471497 3.5310618119471497 0 0.99562342687554 0.0 Y 0.0 N Y 5117 2123 ENSG00000143570 ENSG00000160741 + - 1 1 153940188 153931101 coding coding SLC39A1 CRTC2 153931575 153920145 - - 0.0 153935005 153920805 - + N - - N SA470 2 0.0 1.1025641025641 1 4 6 Y Y 0.0 0.0 39 1.58063709101477 1.45107667371848 1.58063709101477 1.45107667371848 4 - - 0.9878703294093172 HCT116-unstranded CGHSA0331 10.0 378029 GGGGCCCTGGGGAGAGCCAGAGCTCCTGGTGTGGCGCCCCGAGGCGGTAGCTTCAGAGCCTCCAGTGCCTGTGGGGCTGGAGGTGAAGTTGGGGGCCCTGGTGCTGCTGCTGGTGCTCACCCTCCTCTGCAGCCTGGTGCCCATCTGTGTGCTGCGCCGGCCAGGAGCTAACCATGAAGGCTCAG|GGCGTCCCCCTGGATACCAGTAAACTGTCCACTGACCAGCGGTTACCCCCATACCCATACAGCTCCCCAAGTCTGGTTCTGCCTACCCAGCCCCACACCCCAAAGTCTCTACAGCAGCCAGGGCTGCCCTCTCAGTCTTGTTCAGTGCAGTCCTCAGG 7 0.39598226033873707 0.620719735416954 0.9771813000283892 Y Y 3.69209541149257 3.58064844605001 3.58064844605001 0 0.993689284662938 0.0 Y 0.0 N Y 5117 2123 ENSG00000143570 ENSG00000160741 + - 1 1 153940188 153931101 coding coding SLC39A1 CRTC2 153931575 153920145 - - 0.0 153935005 153921860 - + N - - N SA470 2 0.0 1.1 1 1 6 N Y 0.0 0.0 10 1.33447229815182 1.03000531750553 1.33447229815182 1.03000531750553 4 - - 0.980924082052408 HCT116-unstranded CGHSA0331 10.0 383475 CCGGCCAGGAGCTAACCATGAAGGCTCAGCTTCCCGCCAGAAAGCCCTGAGCCTAGTAAGCTGTTTCGCGGGGGGCGTCTTTTTGGCCACTTGTCTCCTGGACCTGCTGCCTGACTACCTGGCTGCCATAGATGAGGCCCTGGCAGCCTTGCACGTGACG|TTACAGGCCCAAAAACTGCGACTGGCATACACAAGGAGCTCTCATTATGGTGGGTCTCTGCCCAATGTTAACCAGATTGGCTCTGGCCTGGCCGAGTTCCAGAGCCCCCTCCACTCACCTTTGGATTCATCTCGGAGCACTCGGCACCATGGGCTGGTGGAACGGGTGCAGCGAGATCCTCGAAGAATGGTGTCCCCACTTCGCCGATACACCCGCCACATTGACAGCTCTCCCTATAGTCCT 10 1.0 0.743070194396728 0.523812990366629 Y Y 3.56914214935951 3.43681151080804 3.43681151080804 0 0.8566058168316829 0.0 Y 0.195745668316832 N Y 5117 2123 ENSG00000143570 ENSG00000160741 + - 1 1 153940188 153931101 coding coding SLC39A1 CRTC2 153931575 153920145 - - 0.0 153934696 153927642 - + N - - N SA470 1 0.0 1.0 1 0 6 Y Y 0.0 0.0 12 1.06887344269442 1.4445986528536698 1.4445986528536698 1.06887344269442 4 - - 0.994848257334812 HCT116-unstranded CGHSA0331 10.0 378028 GCTGCTGCTGGTGCTCACCCTCCTCTGCAGCCTGGTGCCCATCTGTGTGCTGCGCCGGCCAGGAGCTAACCATGAAGGCTCAGCTTCCCGCCAGAAAGCCCTGAGCCTAGTAAGCTGTTTCGCGGGGGGCGTCTTTTTGGCCACTTGTCTCCTGGACCTGCTGCCTGACTACCTGGCTGCCATAGATGAGGCCCTGGCAGCCTTGCACGTGAC|GGGGACTCCTCTCCAGGTTTCTCTAAGGAGATTGCAGCAGCCCTGGCCGGAGTGCCTGGCTTTGAGGTGTCAGCAGCTGGATTGGAGCTAGGGCTTGGGCTAGAAGATGAGCTGCGCATGGAGCCACTGGGCCTGGAAGGGCTAAACATGCTGAGTGACCCCTGTGCCCTGCTGCCTGATCCTGCTGTGGAGGAGTCATTCCGCAGTGACCGGCTCCAATGAGGG 18 1.0 0.437222381329096 0.261236827615589 Y Y 3.5204207511572005 3.5184919402632304 3.5184919402632304 2 0.995315858705765 0.0 Y 0.0 N Y 5117 2123 ENSG00000143570 ENSG00000160741 + - 1 1 153940188 153931101 coding coding SLC39A1 CRTC2 153931575 153920145 - - 0.0 153934696 153920805 - + N - - N SA470 1 0.0 1.0 1 0 6 N Y 0.0 0.0 19 1.30856021469256 1.43164261112404 1.43164261112404 1.30856021469256 4 - - 0.98660755015233 HCT116-unstranded CGHSA0331 10.0 1098511 CCACCTGCTGGCCGCCAGCATCCTGGCCGACCTGCGCGGCGGACCCGGAGCCGCCCCGGGGGGCGCCTCGCCCGCCTCCTCCTCCTCAGCCGCCTCGTCCCCGTCCTCGGGCCGCGCCCCCGGCGCCGCGCCCTCCGCCGCCGCCAAGAGCCACCGCTGTCCCTTCCCGGACTGCGCCAAAGCCTACTACAAGTCCTCGCACCTAAAGTCGCACCTGCGGACGCACA|CAGTGAAGGCTGCACCAGACGCATCTGTACCTGCCCTGTGCGGTCTGTCTGTGGCACGGGTTCTGAGGATTCCGAGTCTGAAGGTGGTGGTGTTGAAGCTGCATGGGATGGTTGCGAAACTGCTCTGCAAGATCTCGGCCTGTCCATGGCCCCCTCAGTGACGGGCAAGGGAGATTTCACCCCATCTAGAGCCCCATTTG 50 1.0 0.606736516579477 0.533838117491838 Y Y 3.5733677143949105 3.5978451103534503 3.5733677143949105 0 0.0 0.0 Y 0.0 N Y 10394 7862 ENSG00000129911 ENSG00000079313 + - 19 19 1863567 1848452 coding intron KLF16 REXO1 1852399 1815248 - - 0.0 1863040 1830865 - + N - 5.46721451393794 N SA470 1 0.32051282051282104 1.0 1 0 1 N Y 0.32051282051282104 0.135 59 1.51585688236663 1.29560417296293 1.51585688236663 1.29560417296293 4 - 2.52542372881356 0.986562534817083 HCT116-unstranded 10.0 1098515 CGGCGCCCCACCTGCTGGCCGCCAGCATCCTGGCCGACCTGCGCGGCGGACCCGGAGCCGCCCCGGGGGGCGCCTCGCCCGCCTCCTCCTCCTCAGCCGCCTCGTCCCCGTCCTCGGGCCGCGCCCCCGGCGCCGCGCCCTCCGCCGCCGCCAAGAGCCACCGCTGTCCCTTCCCGGACTGCGCCAAAGCCTACTACAAGTCCTCGCACCTAAAGTCGCACCTGCGGACGCACACAGGG|CTGGGTTACGACCCCTACAACCCTGAGCTGCCCAAGCCCCCCGCGCAGAGGGAGAATGGCACCCTGGGCCTGGGGGAGGAGCCGCGCCCGGATGTGCTGGAGTTGGAGCTGGTCAACCAGGCCATCGAGGCCGTGCGCAGTGAGGTGGAGCTGGAGCAGCGGCGCTACCGGGAGCTGCTGGAGACGACCCGTGAGCACCGCTCCGCCGAGGCCCCCGCCCTGGCGCCCCGCGGCCCC 85 0.785108352008038 0.8165200563280441 0.650603634228228 Y Y 3.48912663185998 3.29959295981186 3.29959295981186 1 0.0 0.0 Y 0.0 N Y 10394 7862 ENSG00000129911 ENSG00000079313 + - 19 19 1863567 1848452 coding coding KLF16 REXO1 1852399 1815248 - - 0.0 1863040 1828630 - + N - - N SA470 1 0.311203319502075 1.0 1 0 1 Y Y 0.311203319502075 0.11522633744856 93 1.56120302842033 1.57415907014996 1.57415907014996 1.56120302842033 4 - - 0.9917704918530892 HCT116-unstranded 10.0 693246 CAAGATGCTACTGCAGTGGTCCCTCCAATGTGTTTGCTGCCAAATTCACATTATGAGCAAGTCATGACTGCATTTGGAGGCAAAGGGTATTTTGTACAAACACCAGAAGAACTCCAAAAATCCCTGAGGCAGAGCCTAGCAGACACAACTAAACCTTCTCTTATCAACATCATGATTGAGCCACAAGCCACACGGAAGGCCCAG|CCCTTCCCAGCCTGGATCAGAAGAAGCGTGGTGGCCACAAAGCATGCTGCCTGCTGACGCCTCCTCCACCACCACTGTTCCCACCACCATTCTTCAGAGGTGGCCGAAGTCCGGTGAGTACTTTGGGATTTATGAGAGGAAAAAAAGTGCAGGCTACTCAGTGCACACCACGCAGCCCCACCTGCCTGCCCC 25 1.0 0.4331706517354871 0.347833425526032 Y Y 3.4120729950243103 3.63552422018169 3.4120729950243103 0 0.0 0.0 Y 0.0 N Y 1459 770 ENSG00000131373 ENSG00000206561 + - 3 3 15643338 15563258 coding coding HACL1 COLQ 15602211 15491640 - - 0.0 15604865 15531144 - + N - 13.1949885968296 N SA470 1 0.0 1.0 1 0 3 N Y 0.0 0.0 31 1.3150382355573702 1.2632140686388602 1.3150382355573702 1.2632140686388602 4 - 0.0967741935483871 0.989006818533532 HCT116-unstranded 10.0 693898 TGCATTTGGAGGCAAAGGGTATTTTGTACAAACACCAGAAGAACTCCAAAAATCCCTGAGGCAGAGCCTAGCAGACACAACTAAACCTTCTCTTATCAACATCATGATTGAGCCACAAGCCACACGGAAGGCC|CAGGTCATATGGAGACCTGCAATGCACCCAGTACTGCTACATCGACTCCACGCCCTGCCGCTACTTCACCTGAGGGCCGTGAGGAGAAGGTGGGCTGCGCCCCACAGAACTGGCAGCAGCTTCTCCACTGTCATCAAACTGGCCATGTCCTGGCCCCGTC 7 0.0478799381767695 0.855859737703186 0.494718289903499 Y Y 3.6078144761642905 3.6272104187567 3.6078144761642905 2 0.0 0.0 Y 0.0 N Y 1459 770 ENSG00000131373 ENSG00000206561 + - 3 3 15643338 15563258 coding intron HACL1 COLQ 15602211 15491640 - - 0.0 15604865 15493220 - + N - 18.3160276648167 N SA470 1 0.0 1.0 1 0 3 N Y 0.0 0.0 10 0.8097526081018299 1.04296135923516 1.04296135923516 0.8097526081018299 4 - 2.8 0.991240892989256 HCT116-unstranded 10.0 1102758 CTGCAACACCACCAAATGCAACGAGGGCCCAATCCTGGAGCTTGAAAATCTGCCGCAGAATGGCCGCCAGTGTTACAGCTGCAAGGGGAACAGCACCCATGGATGCTCCTCTGAAGAGACTTTCCTCATTGACTGCCGAGGCCCCATGAATCAATGTCTGGTAGCCACCGGCACTCACG|GGGCAGGACAGGAAGTACAGACAGAGAACGTGACAGTGGCTGAGGGTGGGGTGGCTGAGATCACCTGCCGTCTGCACCAGTATGATGGGTCCATAGTTGTCATCCAGAACCCAGCCCGGCAGACCCTCTTCTTCAATGGCACCCGTGCCTTGAAGGATGAGCGTTTCCAGCTTGAGGAGTTCTCCCCACGCCGGGTGCGGATCCGGCTCTCAGATGCCCGCCTGGAGGACGAGGG 18 0.66768824585535 0.460826381631411 0.6000218325657621 Y Y 3.71041843152174 3.17204760017944 3.17204760017944 0 0.0 0.0 Y 0.0 N Y 10778 3196 ENSG00000011422 ENSG00000105767 + - 19 19 44174502 44143991 coding coding PLAUR CADM4 44150271 44126522 - - 0.0 44156377 44131942 - + N - - N SA470 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 11 1.14660969307219 1.41868656939441 1.41868656939441 1.14660969307219 4 - - 0.9595749084620552 HCT116-unstranded 10.0 1037418 TGATGTTCCTGTTGGACACTCCTGGCGTGCTGGCTCCTCGGATTGAAAGTGTGGAGACAGGCCTGAAGCTGGCCCTGTGTGGAACGGTGCTGGACCACCTGGTCGGGGAGGAGACCATGGCTGACTACCTGCTGTACACCCTCAACAAACACCAGCGCTTTG|GGTGGACCAGGTGCTCTGAGGCTGGCGTACAGACACAGCACGTGCGACGGAGTGGTGTTGGTCCGACACCACGGGGCATGGGGATACGTGTGCAACCAGGAGTGGACGCTGGCAGAGGCCTCTGTCGTGTGCAGGCAGCTGGGCTGCGGCCCTGCCGTGGGCGCCCCCAAGTATGTCCCGCTGCCTGGAGAGATGGCCCAGCCCTGGCTTCACAACGTGTCCTGCCGGGGCAACGAGTCCTCCCTCTGGG 9 0.421847637540346 0.8902499863131399 0.7527840680720408 Y Y 3.3112577428018906 3.50376264308368 3.3112577428018906 0 0.0 0.0 Y 0.0 N Y 613 465 ENSG00000148824 ENSG00000214279 + - 10 10 135234811 135337062 coding coding MTG1 RP11-108K14.4 135207598 135267432 + + 0.0 135216277 135269741 + - N - - N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 12 1.04296135923516 1.23082396431478 1.23082396431478 1.04296135923516 4 - - 0.9824933410498968 HCT116-unstranded 10.0 941806 CTCATTCACACCTTGAGGGCCCCGAATACTGAGGACACGGGCCTTTGCCGAGTGCTGTACTCCTGCGTCTTCGGTGCTGAGAAGTCACCTGATGACCCACGGCCGCATGGTGCCGAGAGGGACAGGCTTCTCCGGAAGGAACAGATTTTAGCTGTGG|CCAGTCTCGTTTCCTCTCAGTCCATCCACCCTTCATGGGGCCAGAGCCCTCTCTCCAGAATCTGAGCAGCAATGCCGTTTGCTGAAGACAAGACCTATAAGTATATCTGCCGCAATTTCAGCAATTTTTGCAATGTGGATGTTGTAGAGATTCTGCCTTACCTGCCCTGCCTCACAGCAAGAGAC 12 1.0 0.510397175916835 0.8132075953598 Y Y 3.6623288755052 3.13590542123087 3.13590542123087 0 0.9936491430057008 0.0 Y 0.5871942953705601 N Y 2592 16737 ENSG00000125843 ENSG00000088888 + - 20 20 3805949 3849280 coding intron AP5S1 MAVS 3801178 3827487 + + 0.0 3802940 3835205 + - N - 0.141810435571657 N SA470 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 10 1.11421958874812 1.0170492757759 1.11421958874812 1.0170492757759 4 - 15 0.979515256418714 HCT116-unstranded 10.0 1096660 GTTGAACTAATAAAGTTTGTACGAGTTCAGTGGAGGAGACCGCAAGTTGAGTGGAGGAGGCGGCGGTGGGGCCCCGGACCAGGTGCCTCCATGGCAGGCTCTGAAGAGCTGGGGCTCCGGGAAGACACGCTGAGGGTCCTAGCTGCCTTCCTTAGGCGTGGTGAGGCTGCCGGGTCTCCTGTTCCAACTCCA|CCTAGGAGATGCTGAAGGACGAGGTGCGCACCCTCACTTACCGCAACTCCATGTTTCATAACCGGCACCTCTTCAAGGACAAGGTGGTGCTGGACGTCGGCTCGGGCACCGGCATCCTCTGCATGTTTGCTGCCAAGGCCGGGGCCCGCAAGGTCATCGGGGTG 2 0.26874586644666 0.7816712051404751 0.944481143823828 Y Y 3.643343508066721 3.74913061111987 3.643343508066721 2 0.0 0.00280112044817915 Y 0.00280112044817915 N Y 3870 57405 ENSG00000126453 ENSG00000126457 + - 19 19 50177172 50192286 coding intron BCL2L12 PRMT1 50168399 50179043 + + 0.0 50170056 50185167 + - N - 0.294875486751286 N SA470 2 0.0 1.25 1 2 4 Y Y 0.0 0.0 8 1.00409323404627 0.984659171451826 1.00409323404627 0.984659171451826 4 - 1679.125 0.9605907511001308 HCT116-unstranded 10.0 1102433 ACGAGTTCAGTGGAGGAGACCGCAAGTTGAGTGGAGGAGGCGGCGGTGGGGCCCCGGACCAGGTGCCTCCATGGCAGGCTCTGAAGAGCTGGGGCTCCGGGAAGACACGCTGAGGGTCCTAGCTGCCTTCCTTAGGCGTGGTGAGGCTGCCGGGTCTCCTGTTCCAACTCCACCTAG|GTGTCCTGTGGCCAGGCGGAAAGCAGTGAGAAGCCCAACGCTGAGGACATGACATCCAAAGATTACTACTTTGACTCCTACGCACACTTTGGCATCCACGAGGAGATGCTGAAGGACGAGGTGCGCACCCTCACTTACCGCAACTCCATGTTTCATAACCGGCACCTCTTCAAGGACAA 15 1.0 0.527507112774277 0.749210062113317 Y Y 3.612079893993029 3.44040523365767 3.44040523365767 0 0.0 0.00280112044817915 Y 0.0 N Y 3870 57405 ENSG00000126453 ENSG00000126457 + - 19 19 50177172 50192286 coding coding BCL2L12 PRMT1 50168399 50179043 + + 0.0 50170056 50183744 + - N - - N SA470 2 0.0 1.27272727272727 1 6 4 Y Y 0.0 0.0 22 1.14013167220738 1.2632140686388602 1.2632140686388602 1.14013167220738 4 - - 0.968229288402034 HCT116-unstranded 10.0 1102437 AGCTGCCTTCCTTAGGCGTGGTGAGGCTGCCGGGTCTCCTGTTCCAACTCCACCTAGAAGCCCTGCCCAAGAAGAGCCAACAGACTTCCTGAGCCGCCTTCGAAGATGTCTTCCCTGCTCCCTGGGGCGAGGAGCAGCCCCCTCTGAGTCCCCTCGGCCTTGCTCTCTGCCCATCCGCCCCTGCTATGGTTTAGAGCCTGGCCCAGCTACTCCAGACTTCTATGCTTTGGTGGCCCAGCGGCTGGAACAGCTGGTCCAAGAGCAGCTGAAATCTCCGCCCAGCCCAG|GTGTCCTGTGGCCAGGCGGAAAGCAGTGAGAAGCCCAACGCTGAGGACATGACATCCAAAGATTACTACTTTGACTCCTACGCACACTTTGGCATCCACGAGGAGATGCTGAAGGACGAGGTGCGCACCCTCACTTACCGCAACTCCATGTTTCATAACCGGCACCTCTTCAAGGACAAGGTGGTGCTGGACGTCGGCTCGGGCACCGGCATCCTCTGCATGTTTGCTGCCAAGGCCGGGGCCCGCAAGGTCATCGG 3 0.000214023061806732 0.860133563416507 0.976246363321318 Y Y 3.2829653569618795 3.44040523365767 3.2829653569618795 0 0.0 0.0 Y 0.0 N Y 3870 57405 ENSG00000126453 ENSG00000126457 + - 19 19 50177172 50192286 coding coding BCL2L12 PRMT1 50168399 50179043 + + 0.0 50172194 50183744 + - N - - N SA470 2 0.0 1.85714285714286 1 6 4 Y Y 0.0 0.0 7 0.9781811505870108 1.29560417296293 1.29560417296293 0.9781811505870108 4 - - 0.911075373575302 HCT116-unstranded 10.0 1102434 CCGACTCTTTCGCCCGCCTGGTGGAGCTGTTCTGTAGCCGGGATGACAGCTCTCGCCCAAGCCGAGCATGCCCCGGGCCCCCGCCTCCTTCCCCGGAGCCCCTGGCCCGCCTGGCCCTAGCCATGGAGCTGAGCCGGCGCGTGGCCGGGCTGGGGGGCACCCTGGCCGGACTCAGCGTGGAGCACGTGCACAGCTTCACGCCCTGGATCCAGGCCCACGGGGGCTGGG|TGTCCTGTGGCCAGGCGGAAAGCAGTGAGAAGCCCAACGCTGAGGACATGACATCCAAAGATTACTACTTTGACTCCTACGCACACTTTGGCATCCACGAGGAGATGCTGAAGGACGAGGTGCGCACCCTCACTTACCGCAACTCCATGTTTCATAACCGGCACCTCTTCAAGGACAAGGTGG 19 0.967505774348404 0.535591165669883 0.7193599244576692 Y Y 3.23640338425519 3.43105836246279 3.23640338425519 0 0.0 0.0 Y 0.0 N Y 3870 57405 ENSG00000126453 ENSG00000126457 + - 19 19 50177172 50192286 coding coding BCL2L12 PRMT1 50168399 50179043 + + 0.0 50173745 50183744 + - N - - N SA470 2 0.0 1.05263157894737 1 1 4 Y Y 0.0 0.0 19 1.25025802690923 1.20491188085552 1.25025802690923 1.20491188085552 4 - - 0.9896535648606628 HCT116-unstranded 10.0 1102435 TGGTTTAGAGCCTGGCCCAGCTACTCCAGACTTCTATGCTTTGGTGGCCCAGCGGCTGGAACAGCTGGTCCAAGAGCAGCTGAAATCTCCGCCCAGCCCAG|GTGTCCTGTGGCCAGGCGGAAAGCAGTGAGAAGCCCAACGCTGAGGACATGACATCCAAAGATTACTACTTTGACTCCTACGCACACTTTGGCATCCACGAGGAGATGCTGAAGGACGAGGTGCGCACCCTCACTTACCGCAACTCCATGTTTCATAACCGGCACCTCTTCAAGGACAAGGTGGTGCTGGACGTCGGC 3 0.00341595301790429 0.860133563416507 0.976246363321318 Y Y 3.2829653569618795 3.44040523365767 3.2829653569618795 0 0.0 0.0033333333333333 Y 0.0033333333333333 N Y 3870 57405 ENSG00000126453 ENSG00000126457 + - 19 19 50177172 50192286 coding coding BCL2L12 PRMT1 50168399 50179043 + + 0.0 50172194 50183744 + - N - - N SA470 2 0.0 1.33333333333333 1 2 4 Y Y 0.0 0.0 6 1.23082396431478 0.9198789628036792 1.23082396431478 0.9198789628036792 4 - - 0.958914979652773 HCT116-unstranded 10.0 222664 CCAGCTTCTTCCTCATCTCAGCTGCCCTCTTCATGGGTGGCAGCTTCTACGCCCTGCAGAAGAAGGAGCAAGGCAAGCAGGCTGTCGCGGCGGATGCCCTGGAGCGGGATCTTTTCTTGGAAGCCAAAGACGGTCCTGGGAAGCAACGGTCCCCTGAGATCAT|ATTTTGCAGTAATTTGCATCTGGACATGGGATACGGGAGGCCAGGCTGCTCCTCGCAGTACACCCACCCACGCCTGCACCTGCCTCAGCGAAGCCGCTCGCCGCTGGTTCCAGCACAGGCTAAAGAGCTTCGGCATCCAGAAAACCAGAAGCGCGCCGCGCACGCGCGCCAAGGAGTTCGGCGACGGCCCCGCCCCTTCGGGGGTAGG 10 0.578826102248135 0.75016482987176 0.918278788452859 Y Y 3.55128313764676 3.46448140203209 3.46448140203209 0 0.0 0.0 Y 0.0 N N 1687 4902 ENSG00000170190 ENSG00000125449 + - 17 17 73102257 73126360 coding upstream SLC16A5 ARMC7 73083822 73106047 + + 0.0 73100275 73105830 + - N - - N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 12 1.01057125491108 1.11421958874812 1.11421958874812 1.01057125491108 4 - - 0.973332444171362 HCT116-unstranded 10.0 947749 GTTTAGCGCTGGTGGATAGACACTCGAGACCAGAAATCATATTTTTGCTGAAAGTAGATGATTTACCTGAGGATAATCAGGAACGTTTTAATAGCCTTTTCTCTCTAAGGGAGAAGTGGACAGAAGAAGATATTGCTCCATATATTCA|GAAGCCGGGAAGCCAAGCTCCGCGGGACCGCTTCATGCCGCTGACTGGTGTAGAGCCCGCCAGAATGAACAGGAAGAAAGGAGACAAGGGCTTTGAAAGCCCAAGGCCATATAAATTAACCCATCAGGTCGTCTGCATCAACAACATAAATTTCCAGAGAAAATCTGTTGTGGGATTTGTGGAACTGACTATATTTCCCAC 9 0.850135860073016 0.440286032274938 0.54748313140122 Y Y 3.5859375860788303 3.45041445226185 3.45041445226185 4 0.0 0.0 Y 0.0 N N 1117 8784 ENSG00000136982 ENSG00000064313 + - 8 8 120868250 120845103 coding utr5p DSCC1 TAF2 120846216 120743015 - - 0.0 120850499 120844838 - + N - - N SA470 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 10 0.8810108376147909 1.17252177653145 1.17252177653145 0.8810108376147909 4 - - 0.9764505306499228 HCT116-unstranded 10.0 1136435 CATCACGGGAGTGCGCCTGCCCACCGGCTACTACTTCGGGGCCTCCGCCGGCACCGGCGACCTGTCTGACAATCATGACATCATCTCCATGAAGCTGTTCCAGCTGATGGTGGAGCACACGCCCGACGAGGAGAGCATCGACTGGACCAAGATCGAGCCCAGCGTCAACTTCCTCAAGTCGCCCAAAGA|GGCCGAGCATGGTTATGCGTCCCTGTGCCCGCATCGCAGTCCAGGCCCCATCCACAGGAGGAAGAAGCGACCCCCCCAGGCTCCTGGCGCGCAGGACAGCGGGCGGTCAGTGCACAATGAACTGGAGAAGCGCAGGAGGGCCCAGTTGAAGCGGTGCCTGGAGCGGCTGAAGCAGCAGAT 8 0.874932838466063 0.589056727492709 0.7163674610405479 Y Y 3.36617336972692 3.4816780663355296 3.36617336972692 0 0.99445945945946 0.0 Y 0.99445945945946 N Y 21463 4299 ENSG00000169223 ENSG00000213347 + - 5 5 176778853 176739758 coding coding LMAN2 MXD3 176758563 176728462 - - 0.0 176761285 176738485 - + N - - N SA470 1 0.0241545893719807 1.0 1 0 1 Y Y 0.0 0.0241545893719807 8 1.04296135923516 1.3215162564221898 1.3215162564221898 1.04296135923516 4 - - 0.985231059099993 HCT116-unstranded CGHSA0638 10.0 966033 AACAACGAAGGGTCTTTCTTTTTCCTTTTGCCAAACAACTTTTTAAAAGGCTGGAATTTGCCTCCCTTCTTCTTGTCTATCTTAATAGCCACAGGTCTTTTTCTTGTTGGATAATTCTCCACCAAAATTTTCTCCTTGCAAAAGGGAAACTTCACCTTCAGCTGTAAATGTCAGGAAATGGGGTACATTGCTGAGAAAGCCTGGGAATCACTGCTCTTGTAAG|CTGAGGTCCCCGCCTGGCGCTCCGGCTGGCAGAGCGGCTGGCCGGCGACCGGCGGTCCCGGGCGGGCGGCGGACTCGGCGGCACTGCGCGCGGCAGCCTCCGCATCAGCAGCCGCCGCGGCAGCAGCACCAGCAGCGCACCCGCCTCTCAGTCGGCCGTGGCCTCCATTGCTCTCCCCACTGCCGCCACC 12 0.863952254582008 0.641524701729225 0.817766980018442 N Y 3.62361669590707 3.21075977977757 3.21075977977757 2 0.994749555047038 0.0076659038901600906 Y 0.0076659038901600906 N N 831 718 ENSG00000109265 ENSG00000174799 - + 4 4 57194791 56899270 utr5p downstream KIAA1211 CEP135 57036361 56815037 + + 0.0 57045450 56915465 - + N - - N SA470 1 0.255434782608696 1.0 1 0 1 N N 0.0 0.255434782608696 8 0.932835004533309 0.971703129722196 0.971703129722196 0.932835004533309 4 - - 0.983817622168766 HCT116-unstranded 10.0 691875 GTATTATAGCTGCAAATGTCCTTGTATTCTGTTTATGGAGAGTACCTTCTCTGCAGCGGACAATGATCAGATATTTCACATCGAATCCAGCCTCAAGTGTTATTTCCAATTTTGTCAGTTACGTGGGTAAAGTTGCCACAGGAAGATATGGACCATCACTTGGTGCAG|TCCCAGAGGTGAGGAAGAAGTTCACTCCTAACCCCTCCGCCATCTTTCAGGCCTCAGCTCCCCGGATTCTCAACGTGTGACTGCCTGCACCGTGACACCATGGCTGCCGACAGGACAGGGCTGGGGAGCGGCCTCAGGACCCACTGCCGCGGGGCTGGGCGAGAGCATGGCATGGGCCCCTGCGGGAGGGCACAGCCCCTCTCAAAGCTGTCACCAGGGCCAAAGTGCTGGTGTGGAGCAGATGCACCGATGGA 19 0.883017672576717 0.9209568378278442 0.6585052045990579 Y Y 3.69784855983781 3.5597647729410897 3.5597647729410897 1 0.0 0.00830237532365197 Y 0.00830237532365197 N Y 3737 1630 ENSG00000175193 ENSG00000180834 + - 3 3 183602721 183543382 coding coding PARL MAP6D1 183547173 183533664 - - 0.0 183558358 183535224 - + N - - N SA470 2 0.0 1.19354838709677 1 6 1 Y Y 0.0 0.0 31 1.10126354701849 1.43164261112404 1.43164261112404 1.10126354701849 4 - - 0.9694532928168428 HCT116-unstranded 10.0 690412 CTGCAAATGTCCTTGTATTCTGTTTATGGAGAGTACCTTCTCTGCAGCGGACAATGATCAGATATTTCACATCGAATCCAGCCTCAAGTGTTATTTCCAATTTTGTCAGTTACGTGGGTAAAGTTGCCACAGGAAGATATGGACCATCACTTGGTGCA|GATCTCCCTCTACACCTGGCGCCTCGCCTGCTGCCTGCTGGGACATGGCCTGGCCTGCTCAGCTGACCTGCTGCCACTTCTAGGCAGCCGTCATGTCACTTTGCTACAACTTCAAGCTAAGACAGGCAATGTTTTGGGAGATGAATCTGTTTTCTGACTGGCCAGGGATGTGCTGCAGTCCCCTCCCAGGCGCAGACTGGATACCTTCCAAGTACAACCTTGAAATGGAGCTCT 17 1.0 0.8242027706984121 0.645909199572072 Y Y 3.7297745213208 3.11761290642523 3.11761290642523 2 0.0 0.0 Y 0.0 N N 3737 1630 ENSG00000175193 ENSG00000180834 + - 3 3 183602721 183543382 coding upstream PARL MAP6D1 183547173 183533664 - - 0.0 183558358 183544520 - + N - - N SA470 2 0.0 1.125 1 2 1 N Y 0.0 0.0 16 1.04296135923516 1.49642281977218 1.49642281977218 1.04296135923516 4 - - 0.98263796178129 HCT116-unstranded 10.0 691874 AGCGGACAATGATCAGATATTTCACATCGAATCCAGCCTCAAGTGTTATTTCCAATTTTGTCAGTTACGTGGGTAAAGTTGCCACAGGAAGATATGGACCATCACTTGGTGCAG|TCCCAGAGGTGAGGAAGAAGTTCACTCCTAACCCCTCCGCCATCTTTCAGGCCTCAGCTCCCCGGATTCTCAACGTGTGACTGCCTGCACCGTGACACCATGGCTGCCGACAGGACAGGGCTGGGGAGCGGCCTCAGGACCCA 16 9.73121317031675e-06 0.57374375011526 0.7731162646685029 Y Y 3.69784855983781 3.5597647729410897 3.5597647729410897 1 0.0 0.0126138990888073 Y 0.0126138990888073 N Y 3737 1630 ENSG00000175193 ENSG00000180834 + - 3 3 183602721 183543382 coding coding PARL MAP6D1 183547173 183533664 - - 0.0 183558358 183535224 - + N - - N SA470 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 11 1.34742833988145 1.04296135923516 1.34742833988145 1.04296135923516 4 - - 0.9516274306111552 HCT116-unstranded 10.0 369106 AGTGCCAAGGATTTTGTGAATGAAGCCATCTCCCACTGGGAACTGCAGTCTGAGGGTGGCCAATCTGCAGCCCCATCCCCTGCCTCCTGGGCCTGCAGTCCGAACCTTCGATGCTTCACTTTTGACAGAGGGGATATCAGTCGCTTCCCTCCTGC|CAGGTCTACACCAGCTCTCAGCCCCTGCGTGTGGGGTACTATGAGACTGACAACTATACCATGCCCTCCCCGGCCATGAGGCGGGCCGTGCTGGAGACCAAACAGAGCCTTGAGGCTGCGGGGCACACGGTATGACTGCAGGGTCCTGGAAGTACTGGCATCTCCTCCCCTCACGGGAAGCCTTCCTGGTACCCATGGCTACTCCATCCCTGGCA 8 1.0 0.6046696970811739 0.621672549919618 N Y 3.58064844605001 3.40169305405954 3.40169305405954 0 0.993565776888966 0.0 Y 0.0 N Y 986 1875 ENSG00000117481 ENSG00000117480 + - 1 1 46830824 46879520 coding intron NSUN4 FAAH 46805849 46859937 + + 0.0 46810816 46874131 + - N - 0.923613848785155 N SA470 1 0.0 1.0 1 0 3 N N 0.0 0.0 5 0.8874888584796059 1.17899979739626 1.17899979739626 0.8874888584796059 4 - 47 0.992612272614827 HCT116-unstranded CGHSA0337 10.0 384019 ATCTTTGGCCATCAATCCGTGTCAGTCTCCTCTCAGAGCAGAAGTATGGTGCACTGGTCAATAACTTTGCTGCCTGGGATCATGTAAGTGCTAAGCTGGAGCAGCTGAGTGCCAAGGATTTTGTGAATGAAGCCATCTCCCACTGGGAACTGCAGTCTGAGGGTGGCCAATCTGCAGCCCCATCCCCTGCCTCCTGGGCCTGCAGTCCGAACCTTCGATGCTTCACTTTTGACAGAGGGGATATCAGTCGCTTCCCTCCTGCC|AGGTGTACCGCAAAACCGTGATTGCCCAGTGGAGGGCGCTGGACCTGGATGTGGTGCTGACCCCCATGCTGGCCCCTGCTCTGGACTTGAATGCCCCAGGCAGGGCCACAGGGGCCGTCAGCTACACTATGCTGTACAACTGCCTGGACTTCCCTGCAGGGGTGGTGCCTGTCACCACGGTGACTGCTGAGGACGAGGCCCAGATGGAACATTACAGGGGCTACTTTGGGGATATCTGGGACAAGATGCTGCAGAAGGGCATGAAGAAGAGTGTGGGGCTGCCGGTGGCCGTGCAGTGTGTGGCTCTGCCCTGGC 2 2.6661408419869404e-16 0.241937739030934 0.399374272112046 N Y 3.6025651889288097 3.57063922744582 3.57063922744582 0 0.99620428561109 0.0 Y 0.0 N Y 986 1875 ENSG00000117481 ENSG00000117480 + - 1 1 46830824 46879520 coding coding NSUN4 FAAH 46805849 46859937 + + 0.0 46810816 46877815 + - N - - N SA470 1 0.0 1.0 1 0 3 N N 0.0 0.0 5 0.926356983668494 1.04943938009997 1.04943938009997 0.926356983668494 4 - - 0.973930449993118 HCT116-unstranded CGHSA0337 10.0 384020 TCCCGAATAGCCAGACTACAGAAGATCCTTCACAGCTATGTGCCTGAAGAGATCAGGGATGGAAATCAAGTTCGAGTTACCTCATGGGATGGCAGGAAATGGGGAGAACTGGAGGGGGACACCTATGACCGGGT|CTACACCAGCTCTCAGCCCCTGCGTGTGGGGTACTATGAGACTGACAACTATACCATGCCCTCCCCGGCCATGAGGCGGGCCGTGCTGGAGACCAAACAGAGCCTTGAGGCTGCGGGGCACACGCTGGTTCCCTTCTTG 3 0.0110547862837854 0.860133563416507 0.490239480049015 N Y 3.1227571405236603 3.5555392079057 3.1227571405236603 0 0.992564549515198 0.0 Y 0.0 N Y 986 1875 ENSG00000117481 ENSG00000117480 + - 1 1 46830824 46879520 coding coding NSUN4 FAAH 46805849 46859937 + + 0.0 46818700 46874131 + - N - - N SA470 1 0.0 1.0 1 0 3 Y N 0.0 0.0 5 1.2632140686388602 0.7125822951296109 1.2632140686388602 0.7125822951296109 4 - - 0.9804328351070192 HCT116-unstranded CGHSA0337 10.0 5367 AATACTCAAGCACATCTTGACCCAGAGGAGCTACTACCCACTCTACCCGCCCCAAGAAGACATGGCCATTGACTATGAGTCGTTCTATGTTTACGCACAGCTGCCTGTCACCCCAGATGTCCTCATCATCCCGTCAGAGCTGAGGTACTTCGTGA|AGCTCCTCAGCCCTGGACCGGGGACAAGTAACCCTCGGTGACAAGACCAAAGTGCACTGCTGCCCACACAGTTCCTACCTTTCTGGCTTCAATTCTTCAGAAGAGTTTGCCGTCCTTTGGGGAGAACGTGATTTTTGTTATCTCAGCCCACTGACTTCATTGATCTCTAATCTTTTTTAAT 2 0.91426166275748 0.405730977448259 0.672271604536066 Y Y 3.62977107183644 3.53871326596283 3.53871326596283 0 0.0 0.0 Y 0.0 N Y 826 3555 ENSG00000014138 ENSG00000149798 + - 11 11 65073060 65089900 coding intron POLA2 CDC42EP2 65029233 65082289 + + 0.0 65063461 65088015 + - N - 0.0659684611860462 N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 7 0.997615213181455 1.01057125491108 1.01057125491108 0.997615213181455 4 - 24.4285714285714 0.988192758555385 HCT116-unstranded 10.0 1102088 CGCCGACAGGTAATTTATTTTATTTACTTATTCTGGTTTGTTGTCCGAGTCCCCATAGAATGCTAGCTACTGGAGGGCAGGGATCTTCTGTTGCTCACTGCTTTATTCTCAGGATCTGACACATAGTGCTTGACTCATAGTAGGCTCTTAGTAAACATTTGGTGAGTAAATGAATAAATGAAACGTCCATTCTCGGAGTCGGGTTG|CTGAGCTCTACGTATTTGTCATAAATTAGGTCACATTCTCCCTGGAGGAAATCCAAGGAGGCAAAGTAGTCGGGTGGCCGTGAGGGTGCAGTGTCACAGGTAAGGCTGGTCCGAGGACAGCTCCCACCTCTTTATGGGAGGAGCTGGAGTCACCGCCTTCTTCTCAGTGGCAGCTACAGCAGAGC 26 0.976984789679683 0.42232961628353 0.493076784703996 Y Y 3.48639814491089 3.5816815158199 3.48639814491089 3 0.994608383894098 0.0 Y 0.994608383894098 N N 9539 4455 ENSG00000167775 ENSG00000167774 - + 19 19 8373240 8386280 upstream utr3p CD320 NDUFA7 8367011 8376234 - - 0.0 8373768 8376296 + - N - 0.195217139124785 N SA470 1 0.817757009345794 1.0 1 0 1 N Y 0.817757009345794 0.0 34 1.3862964650703302 1.0623954218296 1.3862964650703302 1.0623954218296 4 - 16.4411764705882 0.9805395509066392 HCT116-unstranded 10.0 5148 CCATCACTAGCATCGCCTTCTCTGAGAATGGTTACTACCTGGCTACAGCGGCTGATGACTCCTCTGTCAAGCTCTGGGATCTGCGCAAGCTTAAGAACTTTAAGACTTTGCAGCTGGATAACAACTTTGAGGTAAAGTCACTGATCTTTGACCAGAGTGGTACCTACCTGGCTCTTGGGGGCACGGATGTCCAGATCTACATCTGCAAACAATGGACGGAGATTCTTCACTTTA|CAGAGCCCCACGATGTCGGCCAACGCCACACTGAAGCCACTCTGCCCCATCCTGGAGCAGATGAGCCGTCTCCAGAGCCACAGCAACACCAGCATCCGCTACATCGACCACGCGGCCGTGCTGCTGCACGGGCTGGCCTCGCTGCTGGGCCTGGTGGAGAATGGAGTCATCCTCTTCGTGGTGGGCTGCCGCATGCGCCAGACCGTGGTCACCACCTGG 50 0.966186386483848 0.6236086146883341 0.616854269926345 N Y 3.5397463357327204 3.48337348351473 3.48337348351473 0 0.0 0.0 Y 0.0249834047432261 N Y 16538 2921 ENSG00000110107 ENSG00000183134 + - 11 11 60674060 60623444 coding intron PRPF19 PTGDR2 60658202 60618413 - - 0.0 60665318 60621204 - + N - 153.445857634741 N SA470 1 0.0 1.0 1 0 1 N N 0.0 0.0 37 1.56120302842033 1.4445986528536698 1.56120302842033 1.4445986528536698 4 - 0.027027027027027 0.988192758555385 HCT116-unstranded 10.0 106067 GCTCATGGCGTCGCCCGGGATAGAAGTGGAATTACTGGGCAAAGGGCATTCAGATTTGGGAGAAGTAGCCCCAGAAATAAAAGCATCAGAGAGACGAACAGCTGTGGCCATTGCAGATTTGGAATGGAGAGAAATGGAAGGAGATGATTGCGAGTTCCGTTATGGAGATGGTACAAATGAGGCTCAGGACAATGATTTTCCAACAG|GTGCTGTCCTGGAGCCGAGAGCTGCCTTGCGCTTGGCGCGCCCTGCACACCTCCCCGGTCTGCGCCAAGAACCGGGCGGCCCGAGTACGCGTAAGCAAGGGGGACAAGCCGGTGACCTACGAGGAGGCACACGCGCCGCACTACATCGCCCACCGTAAAGGCTGGCTGTCGCTGCAC 15 1.0 0.855633670563602 0.5922863745361011 Y Y 3.59425138750382 3.24991303975317 3.24991303975317 0 0.994364995291902 0.0 Y 0.560469632768362 N Y 5977 8107 ENSG00000106608 ENSG00000062582 + - 7 7 43966010 43909492 coding coding URGCP MRPS24 43915493 43906157 - - 0.0 43921258 43908975 - + N - - N SA470 2 0.1804878048780489 1.13333333333333 1 2 1 N Y 0.1804878048780489 0.0 15 1.21786792258515 0.945791046262938 1.21786792258515 0.945791046262938 4 - - 0.992237646175244 HCT116-unstranded 10.0 795855 TCTGATCTGCACAGCTTCCAAAGACAAGAAAGTGAGAGTCATTGATCCCAGGAAACAAGAGATTGTTGCTGAGAAGGAGAAAGCACATGAAGGAGCAAGACCCATGAGAGCCATCTTCCTGGCCGATGGCAATGTCTTCACCACTGGGTTCAGCCGCATGAGCGAGCGGCAGCTGGCTCTCTGGAATCCG|GTGCCATGCCTCTGCAACTCCTCCTGTTGCTGATCCTACTGGGCCCTGGCAACAGCTTGCAGCTGTGGGACACCTGGGCAGATGAAGCCGAGAAAGCCTTGGGTCCCCTGCTTGCCCGGGACCGGAGACAGGCCACCGAATATGAGTACCTAGATTATGATTTCCTGC 8 0.7697058039302559 0.9461634161210258 0.0635600771901601 Y Y 3.45396832231813 3.35926336043241 3.35926336043241 0 0.0 0.0 Y 0.0 N Y 16786 10804 ENSG00000110880 ENSG00000110876 + - 12 12 109125372 109027735 coding coding CORO1C SELPLG 109038885 109015686 - - 0.0 109051080 109018088 - + N - 281.666064114106 N SA470 1 0.0 1.0 1 0 4 N Y 0.0 0.0 11 1.48994479890737 0.958747087992567 1.48994479890737 0.958747087992567 4 - 3.45454545454545 0.992339981631 HCT116-unstranded 10.0 796268 AGTTCCTTTTGTGCTGTCAATCCCAGATTTGTTGCCATAATCATAGAGGCAAGTGGGGGAGGAGCGTTCCTTGTCCTCCCTCTGCACAAGACTGGTCGAATTGACAAATCTTACCCTACAGTATGTGGCCACACAGGACCAGTGCTGGACATAGACTGGTGCCCACATAACGATCAGGTCATTGCCAGCGGTTCAGAGGACTGCACGGTCATGGT|GCCATGCCTCTGCAACTCCTCCTGTTGCTGATCCTACTGGGCCCTGGCAACAGCTTGCAGCTGTGGGACACCTGGGCAGATGAAGCCGAGAAAGCCTTGGGTCCCCTGCTTGCCCGGGACCGGAGACAGGCCACCGAATATGAGTACCTAGATTATGATTTCCTGCCAGAAACGGAGCCTCCAGAAATGCTGAGGAACAGCACTGACACCACTCCTCTGACTGGGCCTGGAACCCCTGAGTCT 211 0.8548054575473442 0.7576066064048291 0.411372290895003 Y Y 3.65760879692984 3.41054541171446 3.41054541171446 0 0.0 0.0 Y 0.0 N Y 16786 10804 ENSG00000110880 ENSG00000110876 + - 12 12 109125372 109027735 coding coding CORO1C SELPLG 109038885 109015686 - - 0.0 109072048 109018088 - + N - - N SA470 1 0.0 1.0 1 0 3 N Y 0.0 0.0 263 1.40573052766478 1.61302719533885 1.61302719533885 1.40573052766478 4 - - 0.993718818353945 HCT116-unstranded 10.0 796260 GTACGACAGAGCAAGTTTCGGCATGTATTTGGGCAAGCGGTGAAAAATGACCAGTGCTATGATGACATCCGGGTTTCTCGTGTGACCTGGGATAGTTCCTTTTGTGCTGTCAATCCCAGATTTGTTGCCATAATCATAGAGGCAAGTGGGGGAGGAGCGTTCCTTGTCCTCCCTCTGCACAAGACTGGTCGAATTGACAAATCTTACCCTACAGTATGTGGCCACACAGGACCAGTGCTGGACATAGACTGGTGCCCACATAACGATCAGGTCATTGCCAGCGGTTCAGAGGACTGCACGGTCATGGT|GCCATGCCTCTGCAACTCCTCCTGTTGCTGATCCTACTGGGCCCTGGCAACAGCTTGCAGCTGTGGGACACCTGGGCAGATGAAGCCGAGAAAGCCTTGGGTCCCCTGCTTGCCCGGGACCGGAGACAGGCCACCGAATATGAGTACCTAGATTATGATTTCCTGCCAGAAACGGAGCCTCCAGA 209 6.74203205544201e-06 0.7801546715215211 0.42246516638533504 Y Y 3.65760879692984 3.41054541171446 3.41054541171446 0 0.0 0.0 Y 0.0 N Y 16786 10804 ENSG00000110880 ENSG00000110876 + - 12 12 109125372 109027735 coding coding CORO1C SELPLG 109038885 109015686 - - 0.0 109072048 109018088 - + N - - N SA470 2 0.0 1.32142857142857 1 9 3 N Y 0.0 0.0 28 1.19843385999071 0.9781811505870108 1.19843385999071 0.9781811505870108 4 - - 0.938772820736956 HCT116-unstranded 10.0 796266 AAGGGTGACAGCAGTATTCGCTATTTTGAGATCACGGATGAATCCCCGTACGTCCACTACCTCAACACATTCAGCAGCAAGGAGCCTCAGAGAGGGATGGGTTACATGCCCAAGAGGGGACTTGATGTTAACAAATGTGAGATTGCCAG|GTGCCATGCCTCTGCAACTCCTCCTGTTGCTGATCCTACTGGGCCCTGGCAACAGCTTGCAGCTGTGGGACACCTGGGCAGATGAAGCCGAGAAAGCCTTGGGTCCCCTGCTTGCCCGGGACCGGAGACAGGCCACCGAATATGAGTACCTAGATTATGATTTCCTGCCAGAAACGGAGCCTCCAGAAATGCTGAGGAACAGCACTGACACCACTCCTCTGACTGG 26 0.90526431173348 0.938934295985953 0.7017100171384699 Y Y 3.52105259334297 3.35926336043241 3.35926336043241 0 0.0 0.0 Y 0.0 N Y 16786 10804 ENSG00000110880 ENSG00000110876 + - 12 12 109125372 109027735 coding coding CORO1C SELPLG 109038885 109015686 - - 0.0 109046048 109018088 - + N - - N SA470 1 0.0 1.0 1 0 3 N Y 0.0 0.0 30 0.926356983668494 1.33447229815182 1.33447229815182 0.926356983668494 4 - - 0.994848257334812 HCT116-unstranded 10.0 791150 ACTCAGGGGTTCCAGGCCCAGTCAGAGGAGTGGTGTCAGTGCTGTTCCTCAGCATTTCTGGAGGCTCCGTTTCTGGCAGGAAATCATAATCTAGGTACTCATATTCGGTGGCCTGTCTCCGGTCCCGGGCAAGCAGGGGACCCAAGGCTTTCTCGGCTTCATCTGCCCAGGTGTCCCACAGCTGCAAGCTGTTGCCAGGGCCCAGTAGGATCAGCAACAGGAGGAGTTGCAGAGGCATGGCACC|ACACTGGCCGTGTCTGTGGTTTTCTTGGGGATGCTGATCAGGTCGCACTTCTTGTTTGCAGTGGGCTTGCTATCCAGAATGTTCTTCTTGACCACCTTGAGATCCCTGTTTTTGCCTGGAATGTACCCGTGCTTCAAGGAGATGAGGATTGGGTCTGCATTCTTGCCTTCGAACCACTCTTCTGCCTCCAGCGCGGCCTCTGGCCCCGCTGTGTCAGGATACAGGTCA 397 1.0 0.911966208977989 0.619196174749725 Y Y 3.47076375903745 3.3948364779275098 3.3948364779275098 1 0.0 0.0 Y 0.0 N Y 10804 16786 ENSG00000110876 ENSG00000110880 - + 12 12 109027735 109125372 utr5p coding SELPLG CORO1C 109015686 109038885 - - 0.0 109018088 109042381 + - N - 1.06590974419053 N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 342 1.6195052162036598 1.51585688236663 1.6195052162036598 1.51585688236663 4 - 3.87719298245614 0.9942315411823952 HCT116-unstranded 10.0 795859 CAACGGCCCGCAATGTGCTTCTTAGTGCAGGCTGTGATAATGCCATTATCATCTGGAATGTGGGAACAGGGGAAGCCCTTATAAACTTGGACGATATGCATTCAGACATGATTTACAATGTGAGCTGGAACCGGAATGGCAGTCTGATCTGCACAGCTTCCAAAGACAAGAAAGTGAGAGTCATTGATCCCAGGAAACAAGAGATTGTTGCT|GTGCCATGCCTCTGCAACTCCTCCTGTTGCTGATCCTACTGGGCCCTGGCAACAGCTTGCAGCTGTGGGACACCTGGGCAGATGAAGCCGAGAAAGCCTTGGGTCCCCTGCTTGCCCGGGACCGGAGACAGGCCACCGAATATGAGTACCTAGATTATGATTTCCTGCCAGAAACGGAGCCTCCAGAAATGCTGAGGAACAGCACTGAC 61 1.0 0.920320689286354 0.7149354814201021 Y Y 3.42360979693834 3.35926336043241 3.35926336043241 0 0.0 0.0 Y 0.0 N Y 16786 10804 ENSG00000110880 ENSG00000110876 + - 12 12 109125372 109027735 coding coding CORO1C SELPLG 109038885 109015686 - - 0.0 109052514 109018088 - + N - 281.666064114106 N SA470 1 0.0 1.0 1 0 4 N Y 0.0 0.0 59 1.37981844420552 1.33447229815182 1.37981844420552 1.33447229815182 4 - 0.644067796610169 0.994848257334812 HCT116-unstranded 10.0 941665 TGAGGAGGAGGAGCTCAGGGCTGAGCTTACCAAGGTGGAAGAGGAAATTGTCACTCTGCGCCAGGTCCTGGCAGCCAAGGAGAGGCACTGTGGAGAGCTCAAGAGGAGGCTGGGCCTCTCCACCCTGGGGGAGCTGAAACAGAACCTGTCCAGGAGCTGGCATGACGTGCAGGTCTCTAGCGC|AATAGCCTAACATGGCAGACCAGAGACAGCGCTCACTGTCTACCTCTGGGGAGTCATTGTACCACGTCCTTGGGTTGGACAAGAACGCAACCTCAGATGACATTAAAAAGTCCTATCGGAAGCTTGCCTTGAAATATCACCCCGACAAGAACCCCGACAACCCGGAGGCCGCGGACAAGTTTAAGGAGATCAAC 12 0.8299500653699731 0.717937112653355 0.23093226503152 Y Y 3.67952553980864 3.72824693801095 3.67952553980864 0 0.994549975424292 0.0 Y 0.0 N Y 13330 11122 ENSG00000101150 ENSG00000101152 + - 20 20 62522898 62567384 coding utr5p TPD52L2 DNAJC5 62496596 62526518 + + 0.0 62505169 62559688 + - N - - N SA470 2 0.0 1.33333333333333 1 3 8 N Y 0.0 0.0 9 1.06887344269442 1.08830750528886 1.08830750528886 1.06887344269442 4 - - 0.945713855064768 HCT116-unstranded CGHSA0577 10.0 941666 CGCGGCGAGCTTCTCCCGGCGCCGCCCGCTCGGCTCCCATAGCGCCCGCGACAGCGGTCCGGACGCCGCCCGAACATGGACTCCGCCGGCCAAGATATCAACCTGAATTCTCCTAACAAAGGTCTGCTGTCTGACTCCATGACGGATGTTCCTGTCGACACAGGTGTGGCTGCCCGGACTCCTGCTGTTGAGGGTCTGACAGAGGCTGAGGAGGAGGAGCTCAGGGCTGAGCTTACCAA|GAATAGCCTAACATGGCAGACCAGAGACAGCGCTCACTGTCTACCTCTGGGGAGTCATTGTACCACGTCCTTGGGTTGGACAAGAACGCAACCTCAGATGACATTAAAAAGTCCTATCGGAAGCTTGCCTTGAAATATCACCCCGACAAGAACCCCGACAACCCGGAGGCCGCGGACAAGTTTAAGGAGATCAACAACGCGCACGCCATCCTCACG 13 0.600677248595829 0.8661114303108409 0.7665859340905901 Y Y 3.25566618809842 3.69632097652796 3.25566618809842 0 0.995380523066927 0.0 Y 0.0021929824561403 N Y 13330 11122 ENSG00000101150 ENSG00000101152 + - 20 20 62522898 62567384 coding utr5p TPD52L2 DNAJC5 62496596 62526518 + + 0.0 62500794 62559688 + - N - - N SA470 2 0.0182648401826484 1.11764705882353 1 2 8 N Y 0.0 0.0182648401826484 17 1.49642281977218 1.41868656939441 1.49642281977218 1.41868656939441 4 - - 0.990372083388968 HCT116-unstranded CGHSA0577 10.0 381217 AACAGCTGAAGCGAATGTTTGAGCCTACTCGTTTGATTGCAACTATCATGGTGCTGTTGTGTTTTGCACTTACCCTGTGTTCTGCCTTTTGGTGGCATAACAAGGGACTTGCACTTATCTTCTGCATTTTGCAGTCTTTGGCATTGACGTGGTACAGCCTTTCCTTCATACCATTTGCA|AGACGGATGTTTCCAGTCCTAAAGATTAGTGTCACAGGGTTGGACCCCAATGCCATGTACTCCCTCCTGCTGGACTTTGTCCCTACGGACAGTCACCGCTGGAAGTACGTCAACGGGGAATGGGTGCCCGCTGGCAAGCCAGAGGTCTCCAGCCACAGCTGCGTCTACATTCACCCGGACTCCCCCAACTTTGG 10 0.9153855108459692 0.4941816492187229 0.7570349762438071 N Y 3.64553343878587 3.5587317031712 3.5587317031712 0 0.994428345233472 0.0 Y 0.0 N Y 967 367 ENSG00000213064 ENSG00000143178 + - 1 1 168212378 168283664 coding coding SFT2D2 TBX19 168195176 168250278 + + 0.0 168208398 168260398 + - N - - N SA470 1 0.0 1.0 1 0 3 Y N 0.0 0.0 8 0.984659171451826 0.984659171451826 0.984659171451826 0.984659171451826 4 - - 0.9909758426747808 HCT116-unstranded CGHSA0039 10.0 381215 GGAAGAGCCGTCAACTTAGCGAGCGCAACAGGCTGCCGCTGAGGAGCTGGAGCTGGTGGGGACTGGGCCGCAATGGACAAGCTGAAGAAGGTGCTGAGCGGGCAGGACACGGAGGACCGGAGCGGCCTGTCCGAGGTTGTTGAGGCATCTTCATTAAGCTGGAGTACCAGGATAAAAGGCTTCATTGCGTGTTTTGCTATAGGAATTCTCTGCTCACTGCTG|ACGGATGTTTCCAGTCCTAAAGATTAGTGTCACAGGGTTGGACCCCAATGCCATGTACTCCCTCCTGCTGGACTTTGTCCCTACGGACAGTCACCGCTGGAAGTACGTCAACGGGGAATGGGTGCCCGCTGGCAAGCCAGAGGTCTCCAGCCACAGCTGCGTCTACATTCACCCGGACTCCCCCA 1 0.006447970731936 0.311179826176934 0.331699683398404 N Y 3.5465630590714 3.58064844605001 3.5465630590714 0 0.994607843137255 0.0 Y 0.0 N Y 967 367 ENSG00000213064 ENSG00000143178 + - 1 1 168212378 168283664 coding coding SFT2D2 TBX19 168195176 168250278 + + 0.0 168200838 168260398 + - N - - N SA470 1 0.0 1.0 1 0 3 Y N 0.0 0.0 8 0.738494378588869 1.09478552615367 1.09478552615367 0.738494378588869 4 - - 0.982590237536329 HCT116-unstranded CGHSA0039 10.0 381218 TTCCCAGGTGGCAAAAGGCAGCCCCATCAGAGATCACGGGAGCAACAGTAAGGGACAGAGTTTTGGGGTCCACTTGTCCCTCAGCATGGAAGCCATCACCGTGGTCCTGCATAGA|ACGGATGTTTCCAGTCCTAAAGATTAGTGTCACAGGGTTGGACCCCAATGCCATGTACTCCCTCCTGCTGGACTTTGTCCCTACGGACAGTCACCGCTGGAAGTACGTCAACGGGGAATGGGTGCCCGCTGGCAAGCCAGAGGTCTCCAGCCACAGCTGCGTCTACATTCACCCGGACTCCCCCAACTTTGGGGCCCACTGGATGAAAGCTCCCATCTC 4 0.00644863064763285 0.478208782666629 0.7648628104871291 N Y 3.67849247003875 3.58064844605001 3.58064844605001 1 0.991330304996755 0.0 Y 0.0116547696301105 N N 967 367 ENSG00000213064 ENSG00000143178 + - 1 1 168212378 168283664 utr3p coding SFT2D2 TBX19 168195176 168250278 + + 0.0 168212225 168260398 + - N - - N SA470 1 0.0 1.0 1 0 3 N N 0.0 0.0 10 1.3733404233407 1.14013167220738 1.3733404233407 1.14013167220738 4 - - 0.98156233474251 HCT116-unstranded CGHSA0039 10.0 1033924 GAGATCGCAGTCCCTGTGGCCAACCTCAAGCTGTCCTGCCAACCCATGTTACGATGAGCAATGATGTTTCTGAGGAGGAGAGCGAGGAAGAGGAAGAGGACAGTGATGAGGAAGAAGTTGAGCTGTGCCCCATCCTTCCTGCCAAAAAGCAGGGGGGCAGGCCCTAGCCCTCCTAG|CATGTGAGGGAGCAGAGCCTGGTGACGGATCAGCTCAGCCGCCGCCTCATCCGGACCTACCAACTCTACAGCCGCACCAGCGGGAAGCACGTGCAGGTCCTGGCCAACAAGCGCATCAACGCCATGGCAGAGGACGGCGACCCCTTCGCAAAGCTCATCGTGGAGACGGACACCTTTGGAAGCAGAGTTCGAGTCCGAGGAGCCGAGACGGGCCTCTACATCTGCAT 21 0.831876293667275 0.6258190767339461 0.338826002364294 Y Y 2.89319139223026 3.46079439322662 2.89319139223026 0 0.0 0.0 Y 0.0 N Y 8424 729 ENSG00000107833 ENSG00000107831 + - 10 10 103543170 103535827 utr3p coding NPM3 FGF8 103541082 103530081 - - 0.0 103541484 103534636 - + N - - N SA470 1 0.0043859649122807 1.0 1 0 6 Y Y 0.0 0.0043859649122807 5 0.8486207332907181 0.8421427124259041 0.8486207332907181 0.8421427124259041 4 - - 0.9764099760440592 HCT116-unstranded 10.0 1035581 AATGATGTTTCTGAGGAGGAGAGCGAGGAAGAGGAAGAGGACAGTGATGAGGAAGAAGTTGAGCTGTGCCCCATCCTTCCTGCCAAAAAGCAGGGGGGCAGGCCCTAGCCCTCCT|AGCATGTGAGGGAGCAGAGCCTGGTGACGGATCAGCTCAGCCGCCGCCTCATCCGGACCTACCAACTCTACAGCCGCACCAGCGGGAAGCACGTGCAGGTCCTGGCCAACAAGCGCATCAACGCCATGGCAGAGGACGGCGACCCCTTCGCAAAGCTCATCGTGGAGACGGACACCTTTGGAAGCAGAGTTCGAGTCCGAGGAGCCGAGACGGGCCTCTACATCTGCATGAACAAGAAGGGGAAGCTG 21 0.0973922983739599 0.778105206883126 0.362220330179464 Y Y 2.94447344351232 3.4058787663015897 2.94447344351232 0 0.0 0.0 Y 0.0 N Y 8424 729 ENSG00000107833 ENSG00000107831 + - 10 10 103543170 103535827 utr3p coding NPM3 FGF8 103541082 103530081 - - 0.0 103541484 103534636 - + N - - N SA470 1 0.0 1.0 1 0 6 Y Y 0.0 0.0 15 1.13365365134256 1.16604375566664 1.16604375566664 1.13365365134256 4 - - 0.971394639379953 HCT116-unstranded 10.0 1035886 AACCTCAAGCTGTCCTGCCAACCCATGTTACGATGAGCAATGATGTTTCTGAGGAGGAGAGCGAGGAAGAGGAAGAGGACAGTGATGAGGAAGAAGTTGAGCTGTGCCCCATCCTTCCTGCCAAAAAGCAGGGGGGCAGGCCCTAGCCCTCCTAG|GCTGTTGCACTTGCTGGTCCTCTGCCTCCAAGCCCAGCATGTGAGGGAGCAGAGCCTGGTGACGGATCAGCTCAGCCGCCGCCTCATCCGGACCTACCAACTCTACAGCCGCACCAGCG 27 0.0569562736866842 0.2712876142647 0.441678494455558 Y Y 2.89319139223026 3.37080016234644 2.89319139223026 0 0.0 0.0 Y 0.0 N Y 8424 729 ENSG00000107833 ENSG00000107831 + - 10 10 103543170 103535827 utr3p coding NPM3 FGF8 103541082 103530081 - - 0.0 103541484 103535533 - + N - - N SA470 1 0.0 1.0 1 0 6 Y Y 0.0 0.0 5 0.7449723994536841 0.427549377077766 0.7449723994536841 0.427549377077766 4 - - 0.935852064813865 HCT116-unstranded 10.0 1036613 ACCATCAGGAGATCGCAGTCCCTGTGGCCAACCTCAAGCTGTCCTGCCAACCCATGTTACGATGAGCAATGATGTTTCTGAGGAGGAGAGCGAGGAAGAGGAAGAGGACAGTGATGAGGAAGAAGTTGAGCTGTGCCCCATCCTTCCTGCCAAAAAGCAGGGGGGCAGGCCCTAGCCCTCCTAGGT|AACTGTTCAGTCCTCACCTAATTTTACACAGCATGTGAGGGAGCAGAGCCTGGTGACGGATCAGCTCAGCCGCCGCCTCATCCGGACCTACCAACTCTACAGCCGCACCAGCGGGAAGCACGTGCAGGTCCTGGCCAACAAGCGCATCAACGCCATGGCAGAGGACGGCGACCCCTTCGCAAAGCTCATCGTGGAGACGGACACCTTTGGAAGCAGAGTTCGAGTCCGA 61 0.163528619766191 0.4431542144808111 0.261699897625064 Y Y 2.94447344351231 3.71041843152174 2.94447344351231 0 0.0 0.0 Y 0.0 N Y 8424 729 ENSG00000107833 ENSG00000107831 + - 10 10 103543170 103535827 utr3p coding NPM3 FGF8 103541082 103530081 - - 0.0 103541484 103534669 - + N - - N SA470 1 0.0 1.0 1 0 6 Y Y 0.0 0.0 140 1.48346677804255 1.52233490323144 1.52233490323144 1.48346677804255 4 - - 0.947376392226756 HCT116-unstranded 10.0 1036346 CAGCTGCCTTAGCGTTTTTGAGTCAGGAGAGCCGAACGCGGGCCGGGGGTGTCGGGGGCCTACGGGTCCCGGCCCCGGTCACTATGGACAGTTTTTTCTTCGCTCTGCCTCACCGAGGGAGCCAAAGACGAGTGTAATGTGGTAGAAGTTGTGGCCCGGAACCATGACCATCAGGAGATCGCAGTCCCTGTGGCCAACCTCAAGCTGTCCTGCCAACCCATG|GCTGTTGCACTTGCTGGTCCTCTGCCTCCAAGCCCAGGTAACTGTTCAGTCCTCACCTAATTTTACACAGCATGTGAGGGAGCAGAGCCTGGTGACGGATCAGCTCAGCCGCCGCCTCATCCGGACCTACCAACTCTACAGCCGCACCAGCGGGAAGCACGTGCAGGTCCTGGCCAACAAGCGCATCAACGCCATGGCAGAGGACGGCGACCCCTTCGCAAAGCTCATCGTGGAGACGGACACCTTTGGAAGCAGAGTTC 14 0.30160006116216903 0.486628869321928 0.7912249978680749 Y Y 3.3184850412945 3.4320914322326805 3.3184850412945 0 0.0 0.0 Y 0.0 N Y 8424 729 ENSG00000107833 ENSG00000107831 + - 10 10 103543170 103535827 coding coding NPM3 FGF8 103541082 103530081 - - 0.0 103542235 103535533 - + N - - N SA470 1 0.0 1.0 1 0 6 N Y 0.0 0.0 33 1.46403271544811 1.47698875717774 1.47698875717774 1.46403271544811 4 - - 0.980938424367558 HCT116-unstranded 10.0 914383 CTTGCCCAGCAAGTGTGTGGCTATCGACTGTGAGATGGTGGGCACGGGACCCCGAGGGCGGGTAAGCGAGCTGGCCCGCTGTTCCATTGTGAGCTACCATGGCAATGTCCTCTATGACAAGTACATCAGGCCTGAGATGCCCATCGCTGACTACCGTACCCGCTGGAGTGGCATCACTCGGCAGCACATGCGCAAGGCTGTCCCCTTCCAGGTGGCCCAGAAAGAGATCCT|GCAGCTCCTGAAAGGCAAGCTGGTGGTGGGTCATGACCTGAAGCACGACTTCCAGGCACTGAAAGAGGACATGAGCGGCTACACAATCTACGACACGTCCACTGACAGGCTGTTGTGGCGTGAGGCCAAGCTGGACCACTGCAGGCGTGTCTCCCTGCGGGTGCTGAGTGAG 22 0.9593989738023232 0.880494459235057 0.8553834540183941 Y Y 3.39809933120991 3.43039601505348 3.39809933120991 0 0.0 0.15906343541330895 Y 0.15906343541330895 N Y 12425 1017 ENSG00000181026 ENSG00000172183 + - 15 15 89175513 89199714 coding coding AEN ISG20 89164527 89179384 + + 0.0 89169980 89195341 + - N - - N SA470 1 0.0 1.0 1 0 4 Y Y 0.0 0.0 26 1.57415907014996 1.1919558391258898 1.57415907014996 1.1919558391258898 4 - - 0.9903979719004 HCT116-unstranded 10.0 914703 AGCCTCAGGGCCCTTGCCCAGCAAGTGTGTGGCTATCGACTGTGAGATGGTGGGCACGGGACCCCGAGGGCGGGTAAGCGAGCTGGCCCGCTGTTCCATTGTGAGCTACCATGGCAATGTCCTCTATGACAAGTACATCAGGCCTGAGATGCCCATCGCTGACTACCGTACCCGCTGGAGTGGCATCACTCGGCAGCACATGCGCAAGGCTGTCCCCTTCCAGGTGGCCCAGAA|AAAGCATCTCTGAGGGTCCCCAAGGAACATGGCTGGGAGCCGTGAGGTGGTGGCCATGGACTGCGAGATGGTGGGGCTGGGGCCCCACCGGGAGAGTGGCCTGGCTCGTTGCAGCCTCGTGAACGTCCACGGTGCTGTGCTGTACGACAAGTTCATCCGGCCTGAGGGAGAGATCACCGATTACAGAACCCGGGTCAGCGGGGTCACCCCTCAGCACATGGTGGGGGCCACACCATTTGCCGTGGCC 8 0.660619275191066 0.928261865962117 0.9009855100704608 Y Y 3.5597647729410897 3.3770478242316497 3.3770478242316497 0 0.0 0.0 Y 0.0 N Y 12425 1017 ENSG00000181026 ENSG00000172183 + - 15 15 89175513 89199714 coding utr5p AEN ISG20 89164527 89179384 + + 0.0 89169980 89182574 + - N - - N SA470 1 0.0 1.0 1 0 4 Y Y 0.0 0.0 9 1.41868656939441 1.40573052766478 1.41868656939441 1.40573052766478 4 - - 0.990466625190776 HCT116-unstranded 10.0 540830 TAGCAAGGCAGTAGACCCAGGCCTGCCTTCTGTGAAGCAAGAGCCACCTGACCCAGAGGAGGACAAGGAGGAGAACAAGGATGATTCTGCCTCCAAATTGGCCCCAGAGGAAGAGGCAGGAGGGGCTGGCACACCCGTGATCACGGAGATTTTCAGCCTGGGTGGAACCCGCTTCCGAGATACAGCAGTCTGGTTGCCAA|GAGATCCAAGCCTCCTAAAGGCCAAGGAGCTGAGCACCATCTAGAAAGAATCCGACGCAGCCATCAGAAGCATAATGCTATTTTGGCTTCCATTAAGTCAAGTGAGCGGGATCGCTTGAAAGCTGAGTGGGACCAGCACAATGACTGCAAGATTTTGGACAGCCTTGTGCGAGCAAGAATCAA 2 0.201270799318573 0.85341632713452 0.962850634825358 Y Y 3.8668252384476296 3.44143830342756 3.44143830342756 0 0.0 0.0 Y 0.00260416666666663 N Y 3637 86 ENSG00000141644 ENSG00000172361 + - 18 18 47808144 47792892 coding coding MBD1 CCDC11 47793252 47753563 - - 0.0 47799047 47788589 - + N - - N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 7 1.07535146355923 0.900444900209235 1.07535146355923 0.900444900209235 4 - - 0.977837060564704 HCT116-unstranded 10.0 5648 CACAGGCTCCCCCTCCCAGAGCAGCCGCAGTGGGAGTCCCAGCTACCGGCCCGCCATGGGCTTCACCACTCTGGCCACCGGCTACCCTTCCCCTCCACCCGGCCCCGCCCCTGCTGGGCCTGGGGACAGCTTGGACGTGTTTGGACAGACGCCTTCCCCTCGAAGGACGGGGGAGGAATTGCTCCGACCGGAGACCCCACCACCCACGTTACCTACTTCAG|GAACACTTCCACCTGCACCCGGGAACGCTGCTGCGCCTGAGAGGCTGGAGGCTCTGAAATACCAACGGATAAAGAAGCCCAAAAAGTCATCCAAGGGCTCTTCGAAGTCAAAGAAACGATCCGACGATTCTGCCTCCCAGACTCAGCAGCTTCCCAACTCTCAGGTTCTGTGGCCCGATGAAGCTGTCTGCCTCCGAAAGAAGAAGAGACATTCTCGTCCTGACCCCTTTGCCC 15 0.986757421701637 0.992079629770658 0.8000422769212719 Y Y 3.23057053032324 3.29400764533596 3.23057053032324 0 0.0 0.0 Y 0.0 N Y 865 160 ENSG00000080854 ENSG00000254918 + - 11 11 133826880 133782257 coding coding IGSF9B RP11-259P6.1 133785185 133778459 - - 0.0 133789637 133781902 - + N - - N SA470 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 12 1.45107667371848 1.28912615209811 1.45107667371848 1.28912615209811 4 - - 0.992455626252426 HCT116-unstranded 10.0 965921 GCCTGGCGGTAGATGCAGCGCACCGTGTAGCGCACTTCTGACCAGTAGTTCTGCAGCTGCTGAGGTTCCCGGTCCGCCTCTGCCGAAATTTCT|CACTGGCTGGTCAAGGCCGCCATGCCTCTCCTCCTTCTCCACGGTCCTGCGGCAGTCCGGGCACACCCACAGTGGCAGGTGCAGCACGCTGTTGCCCTTGGGAG 34 1.03897542544263e-05 0.7295982592150471 0.34210222955507696 Y Y 3.4655144718019804 3.41525614272 3.41525614272 6 0.989301618333876 0.0 Y 0.32600195503421303 N N 2568 23053 ENSG00000125386 ENSG00000063978 - + 4 4 2734292 2627047 utr5p utr3p FAM193A RNF4 2626988 2463947 + + 0.0 2628137 2598056 - + N - 25.5218558998223 N SA470 1 0.0 1.0 1 0 2 N Y 0.0 0.0 6 0.686670211670352 0.8421427124259041 0.8421427124259041 0.686670211670352 4 - 28.3333333333333 0.9742197006175192 HCT116-unstranded 10.0 968062 CACGAGCTCCTTCACTCCCTCCTTGTCAGGCACCAGAGACTGGTCCTGGTCATCTGCCAGCGGGGTTCCTGCCTGGCGGTAGATGCAGCGCACCGTGTAGCGCACTTCTGACCAGTAGTTCTGCAGCTGCTGAGGTTCCCGGTCCGCCTCTGCCGAAATTTCT|CACTGGCTGGTCAAGGCCGCCATGCCTCTCCTCCTTCTCCACGGTCCTGCGGCAGTCCGGGCACACCCACAGTGGCAGGTGCAGCACGCTGTTGCCCTTGGGAGCCATGGAAAGGGCCAATTTGCTCGCAGTCTTAATTCCACTCTCTAAGAATGATGAGTCTTTCCGTTCACTTCTGCACAGAAGACAA 34 0.978186256382643 0.7295982592150471 0.34210222955507696 Y Y 3.4655144718019804 3.41525614272 3.41525614272 6 0.9938823610966692 0.0 Y 0.0 N N 2568 23053 ENSG00000125386 ENSG00000063978 - + 4 4 2734292 2627047 utr5p utr3p FAM193A RNF4 2626988 2463947 + + 0.0 2628137 2598056 - + N - 25.5218558998223 N SA470 1 0.0 1.0 1 0 2 N Y 0.0 0.0 32 1.06887344269442 1.19843385999071 1.19843385999071 1.06887344269442 4 - 5.3125 0.986694820630669 HCT116-unstranded 10.0 384229 CATGCTGCAGGGCCGGCAGCGGCAGGCGGAGCAGGAGGCCACAGTGGCGCCGGCAGAGCAGGAGTGGCTGGAGGAGCTGTGGTTGGAGCAGGAGGTGGCACGGCAGGGCCTGGAGGGCTCCCTATGAGTGGCGGAGCAGGCCCAGGAGGCGCTGGAGCAACAGCTCCCCACACTGCACCATGAGCTCAGTTGGCTGCAGGAGCAGCTAGCAC|AGGCAATCTGAAGGCAAATCCTGTTTAGACCCAGGCGAAGGTTCCCGGTGACCCGGGCTCTCACCAGCCAATTGTCCCTTGCCGTCCTCCTGAGGGTGCCTGGAGCTTAAGCACTGTGTGCTCTTGGCCTCCACACTGGGGATGCCGCTGACTCCCACTGTCCAGGGCTTCCAGTGGATTCTCCGAGGCCCTGATGTAGAAACTTCC 67 0.953830373320837 0.795400537752337 0.60340187976621 Y Y 3.42204236083514 3.631930497332061 3.42204236083514 1 0.9951805843110192 0.0 Y 0.0 N Y 3707 3483 ENSG00000215908 ENSG00000219481 + - 1 1 16971178 16940083 intron intron CROCCP2 NBPF1 16944751 16888818 - - 0.0 16952270 16935274 - + N - - N SA470 8 0.11219512195122 2.46774193548387 1 41 1 N Y 0.0 0.11219512195122 62 1.41220854852959 1.327994277287 1.41220854852959 1.327994277287 4 - - 0.93725573129031 HCT116-unstranded 10.0 608516 GCGCGCCTCACCCGCGGCGTCGCAGTGCGTGGGTTGGGGCAGCGACCAACGGTCGGCAGCTCCACCGTGCCCACTCCCCGGGCCTGGCGAGGACGCCGGAAGCGCTCTCCCGCCAGGAAGGCCGCGTGGGTGAGCGAGG|ACTCCACGGTTAATATCACAGCAGCTGGACAGAGACAAGAGCAGAGTCAGGCATCCTGGGCTGGCAGCTGCCTGTTGGGACTACACAGCCCCAAGCCAGCTCCCTGTCTCCCTAGGCAGAACACACGTTGGCAGAGACACTTGCTTTCTCCTCTGGCTGTTTCAAGCACTGGCCTAAGAGGTGGGGACTTGGGAGGAAGAGAACTGACATTGCGGAGCCCAAGGAAGC 26 1.0 0.740925688771771 0.458533571918896 Y Y 3.31592438821476 3.72824693801095 3.31592438821476 0 0.0 0.0 Y 0.0 N N 3310 822 ENSG00000196155 ENSG00000135740 - + 16 16 67323402 67306093 utr5p coding PLEKHG4 SLC9A5 67311413 67271586 + + 0.0 67313052 67300014 - + N - 0.151529793411414 N SA470 1 0.0 1.0 1 0 3 N Y 0.0 0.0 19 0.8421427124259041 1.21138990172034 1.21138990172034 0.8421427124259041 4 - 1.31578947368421 0.994848257334812 HCT116-unstranded 10.0 733833 AAAACATGTCTCCGTTTTCATCTTCCAGTGATGCCTGAAAACTCACCATCTGAAAGGGAATCAGGCCTGTAGCTCGGATATGCACTGGCTCATCAACAAGTGCACTCACAGGGGTAGCTGTCAACTGGATCATTTTTTTAGTGTGGCACCTGGGATGATTCTTCAGGAATATCTTCAGCAAAACCTCAA|AACCCTGCACATCTGGTGGAGTCTGGAGTTAGGGACTACATGACCCAAGTCATCAGCTAAATGAGCCAGAAGATTGAACTTTAGACGACTATCTTCCAGGGAGATGTCTTGCCAATTACTAGGAAGAGATGAACCAAAAACTTCTTTAACGTAAGATTCCAAACG 40 0.6042257319746971 0.7936583930139871 0.576208050875031 Y Y 3.49847350305486 3.6035982586987 3.49847350305486 0 0.0 0.00281690140845059 Y 0.0 N Y 6836 754 ENSG00000136881 ENSG00000136897 - + 9 9 104145801 104160896 utr5p coding BAAT MRPL50 104122699 104149915 - - 0.0 104133745 104152859 + - N - 0.228082875131129 N SA470 2 0.0 1.27272727272727 1 9 3 N Y 0.0 0.0 33 1.2632140686388602 1.03648333837034 1.2632140686388602 1.03648333837034 4 - 5.48484848484848 0.97794147515341 HCT116-unstranded 10.0 733834 AGTGGGCTTGAGAATAAAACATGTCTCCGTTTTCATCTTCCAGTGATGCCTGAAAACTCACCATCTGAAAGGGAATCAGGCCTGTAGCTCGGATATGCACTGGCTCATCAACAAGTGCACTCACAGGGGTAGCTGTCAACTGGATCATTTTTTTAGTGTGGCACCTGGGATGATTCTTCAGGAATATCTTCAGCAAAACCTCAAA|ACCTGAATCGAGACCAAAATTCTCTACATGGTGTCCCTGAGACTGTCCACATGAAGACTCTTCTGGTAATGCCCGACACAGATCGCGCCGCCATCTTCGATGAGATCCACGGGCCTGAGCGCAGCCTTCAGCCAGCAGTGACGCGCCCAGACCAGCCAATCGGAT 106 0.7796235984267329 0.606309144687968 0.26918530452476697 Y Y 3.44615838200292 3.6035982586987 3.44615838200292 0 0.0 0.0 Y 0.0 N Y 6836 754 ENSG00000136881 ENSG00000136897 - + 9 9 104145801 104160896 utr5p intron BAAT MRPL50 104122699 104149915 - - 0.0 104133745 104160783 + - N - 0.435370444257753 N SA470 2 0.0 1.35054347826087 1 129 3 N Y 0.0 0.0 368 1.3862964650703302 1.07535146355923 1.3862964650703302 1.07535146355923 4 - 0.364130434782609 0.945713855064768 HCT116-unstranded 10.0 966387 TAGACCTTTTGTAATGTTCCAACATAGGAAAGCAGGATCACCAGCAAGAGAACGAGAGCACAGATACATGGAATCAGGACCAGCAATAGGAACCGGAGGAGGTTAGCAGTCGCCAGCTTCTGAGAGCAGCCATTGCCCATGTTATTGTCATCAGCTCTCAAG|ACCTGTTGTCTTCGTTTTTCTTCTTCAAGAGCAGCTTTGGCTTCTGCTTCTTTTATCTGTTTATACACATACAAAAGTCAATTTACAATTTAGTCATCACATTTTATATGGAATTTTAACATCTACCCATCCAGGTTCTATTAACCCATATCAACTTTTAGGAGCTTGAAATCATTT 43 0.60261957168238 0.608366851825747 0.8042832274646451 N Y 3.44143830342756 3.3112577428018906 3.3112577428018906 1 0.9938453159041388 0.0 Y 0.14449891067538098 N Y 573 796 ENSG00000145244 ENSG00000170448 - + 4 4 47840123 47916653 coding intron CORIN NFXL1 47596015 47849257 - - 0.0 47809064 47853112 + - N - 0.232931078802707 N SA470 1 0.0 1.0 1 0 2 N N 0.0 0.0 19 1.06887344269442 1.1077415678833 1.1077415678833 1.06887344269442 4 - 0.947368421052632 0.983711677598595 HCT116-unstranded CGHSA0792 10.0 968210 ACAAAGTACGTGAAAATCAGGTTTCAATAGAATGTGACACAACGTGCAAGGAAATGAAGCGGAAAGCATCTGAGATAAAAGAAGCAGAAGCCAAAGCTGCTCTTGAAGAAGAAAAACGAAGACAACAGG|TCTTGAGAGCTGATGACAATAACATGGGCAATGGCTGCTCTCAGAAGCTGGCGACTGCTAACCTCCTCCGGTTCCTATTGCTGGTCCTGATTCCATGTATCTGTGCTCTCGTTCTCTTGCTGGTGATCCTGCTTTCCTATGTTGGAACATTACAAAAGGTCTATTTTAAATCAAATGGGAGTGAACCTTTGGT 43 0.8687708319724851 0.455316239078807 0.7857383972735129 N Y 3.24061960172077 3.48271113610543 3.24061960172077 0 0.992272061823505 0.0 Y 0.00309597523219829 N Y 796 573 ENSG00000170448 ENSG00000145244 + - 4 4 47916653 47840123 coding coding NFXL1 CORIN 47849257 47596015 - - 0.0 47853112 47809064 - + N - - N SA470 1 0.0 1.0 1 0 1 Y N 0.0 0.0 7 0.570065836103689 0.99113719231664 0.99113719231664 0.570065836103689 4 - - 0.9873399480501148 HCT116-unstranded CGHSA0792 10.0 913884 TTATACACAATTTGGAGGAAAACGTCCCTTTGGTGTTTCATTGCTGTACATTGGCTGGGATAAGCACTATGGCTTTCAGCTCTATCAGAGTGACCCTAGTGGAAATTACGGGGGATGGAAGGCCACATGCATTGGAAATAATAGCGCT|GATGAGAAAAATCAGTTAATGACAACAAACGTCTGGTTGAAACAGGAATGGATAGATGTAAAATTAAGATGGAACCCTGATGACTATGGTGGAATAAAAGTTATACGTGTTCCTTCAGACTCTGTCTGGACACCAGACATCGTTTTGTTTGATAATGCAGATGGACGTTTTGAAGGGACCAGTACGAAAACAGTCATCAGGTACAATGGCACTGTCACCTGGACTCCACCG 16 0.11753789553508195 0.740435828992315 0.7352425030040508 Y Y 3.43681151080804 3.43681151080804 3.43681151080804 0 0.0 0.0 Y 0.0 N Y 14988 1083 ENSG00000041357 ENSG00000169684 + - 15 15 78841604 78887611 coding coding PSMA4 CHRNA5 78832747 78857862 + + 0.0 78838106 78878987 + - N - - N SA470 1 0.0 1.0 1 0 4 Y Y 0.0 0.0 11 1.51585688236663 1.37981844420552 1.51585688236663 1.37981844420552 4 - - 0.9894311593103108 HCT116-unstranded 10.0 911579 TATATGTGTGTTAACTAAATGTATACTTCAGTCCCTTGGGAGGCTTCACTTATTTGCATTTCCAATATGAACTGGTATTAATATATTTGCCCATTTATAAATAACAGGAACAAAAAGCCCAAGAGATCCAACAATTGAAACGAAAAGAAAAGTCCACAGAAACATCCGATCAAGAACCTGGGCTATGAATTTCCAATCTTCAACAACCTGATGACTGTTTTCGTACTGGTCCCTTCAAAACGTCCATCTGCA|AGCGCTATTATTTCCAATGCATGTGGCCTTCCATCCCCCGTAATTTCCACTAGGGTCACTCTGATAGAGCTGAAAGCCATAGTGCTTATCCCAGCCAATGTACAGCAATGAAACACCAAAGGGACGTTTTCCTTTA 3 0.5829149179050059 0.9906257528050992 0.96295210983188 Y Y 3.52936639476796 3.43681151080804 3.43681151080804 0 0.0 0.0 Y 0.0 N Y 1083 14988 ENSG00000169684 ENSG00000041357 - + 15 15 78887611 78841604 coding coding CHRNA5 PSMA4 78857862 78832747 + + 0.0 78882147 78838106 - + N - 0.253562091687805 N SA470 1 0.0 1.0 1 0 4 Y Y 0.0 0.0 11 1.30208219382774 0.8486207332907181 1.30208219382774 0.8486207332907181 4 - 382.454545454545 0.9921004685957132 HCT116-unstranded 10.0 1099074 AACTTCCGCTTCCGGTTCCTAGCGTTAACTGCGACCGGGGTTCAGCGCTCGGGTGAGGAGCTGGTGGCGTCGGCAGGTTCGAGGCGATTCG|AGGCCGAGTGTACTACTTCAACCACATCACTAACGCCAGCCAGTGGGAGCGGCCCAGCGGCAACAGCAGCAGTGGTGGCAAAAACGGGCAGGGGGAGCCTGCCAGGGTCCGCTGCTCGCACCTGCTGGTGAAGCACAGCCAGTCACGGCGGCCCTCGTCCTGGCGGCAGGAGAAGATCACCCGGACCAAGGAGGAGGCCCTGGAGCTGATCAACGGTG 89 0.869560156748896 0.294605523045438 0.5286384853061951 N Y 3.36819965647335 3.77530342425761 3.36819965647335 0 0.0 0.0 Y 0.0 N Y 11350 5642 ENSG00000198258 ENSG00000127445 + - 19 19 9940791 9960358 utr5p intron UBL5 PIN1 9938568 9945933 + + 0.0 9938660 9949112 + - N - 0.0579232547963614 N SA470 1 0.0 1.0 1 0 1 N N 0.0 0.0 65 0.6283680238870201 1.07535146355923 1.07535146355923 0.6283680238870201 4 - 24.6615384615385 0.987970204862969 HCT116-unstranded 10.0 1099190 GGCGGAATGACTTCGAGGCCTTGATCCTCTGAGCTCTCCTGTCGCCCAGCGTATCACTGCCCAGGTGCACGGTGTACTCATTCATCTTGCAGTGGGCGGCAGTGAGCACCCAGCGCTCATTGACCAGGACGCCTCCGCAGTGGAGCTGATTGCCACTGAGCAGGGCCACCTGCCATGGGTGGGAGCCTCTTGCACATGGGGCGCCATCAATAATCTTGTCACCCTGGGCT|GCCCAGGCTCCCCCCAGCAAGAGCAGGAACATCCACGTCTTGGCCGCACGAGGTCGGGGGCGTCCCATGGTGAGGTCTGGGAAATGGAGAGGGCGGGGCCGGTAAACAGGAAGGAGGAGCCTGAGCTCCCAGTTCTGGAT 47 1.0 0.21448570225001887 0.268332706916207 Y Y 3.44615838200292 3.30232144676095 3.30232144676095 0 0.992876395841355 0.0 Y 0.0 N Y 2410 846 ENSG00000169035 ENSG00000129455 - + 19 19 51487320 51504958 coding coding KLK7 KLK8 51479729 51499264 - - 0.0 51485170 51504354 + - N - 1.55134343371118 N SA470 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 35 1.34095031901663 0.8615767750203471 1.34095031901663 0.8615767750203471 4 - 10.5142857142857 0.935505713570152 HCT116-unstranded 10.0 1102004 TCAGTAGGTGACCCCGCCCCTGGATTCTGGAAGACCTCACCATGGGACGCCCCCGACCTCGTGCGGCCAAGACGTGGATGTTCCTGCTCTTGCTGGGGGGAGCCTGGGCA|GTGACCTTTCCCTCTGACCTCATGTGCGTGGATGTCAAGCTCATCTCCCCCCAGGACTGCACGAAGGTTTACAAGGACTTACTGGAAAATTCCATGCTGTGCGCTGGCATCCCCGACTCCAAGAAAAACGCCTGCAATGGTGACTCAGGGGGACCGTTGGTGTGCAGAGGTACCCTGCAAGGTCTGGTGTCCTGGGGAACTTTCCCTTGCGGCCAACCCAATGACCCAGGAG 5 1.0 0.32545030816906 0.574485043629794 Y Y 3.3536034980430003 3.55231620741665 3.3536034980430003 0 0.990935595017228 0.0 Y 0.0029154518950436107 N Y 846 2410 ENSG00000129455 ENSG00000169035 + - 19 19 51504958 51487320 coding coding KLK8 KLK7 51499264 51479729 - - 0.0 51504354 51483180 - + N - - N SA470 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 7 0.524719690049986 0.816230628966645 0.816230628966645 0.524719690049986 4 - - 0.987486686477192 HCT116-unstranded 10.0 1099191 CGGAGACAGTACAGGTGGTTCCAGGGGGTTCGCAGCGGGAGGGCAGCCTGACTTTCTTCACCATGGATGACAGCCTGGCCTGGCTATTGAGCTTCACGAGCATGAGGTCATTAACATGGGTCTGTGTGGAGTAGCCGGGGTGGCGGAATGACTTCGAGGCCTTGATCCTCTGAGCTCTCCTGTCGCCCAGCGTATCACTGCCCAGGTGCACGGTGTACTCA|CTGCCCAGGCTCCCCCCAGCAAGAGCAGGAACATCCACGTCTTGGCCGCACGAGGTCGGGGGCGTCCCATGGTGAGGTCTGGGAAATGGAGAGGGCGGGGCCGGTAAACAGGAAGGAG 19 0.658114281312151 0.200823106956887 0.645750698205771 Y Y 3.46977054206092 3.37295958784206 3.37295958784206 0 0.991550348953141 0.0 Y 0.0 N Y 2410 846 ENSG00000169035 ENSG00000129455 - + 19 19 51487320 51504958 coding coding KLK7 KLK8 51479729 51499264 - - 0.0 51483743 51504354 + - N - 1.51091447142267 N SA470 1 0.0 1.0 1 0 2 N Y 0.0 0.0 17 1.24378000604441 0.570065836103689 1.24378000604441 0.570065836103689 4 - 21.6470588235294 0.966903685555103 HCT116-unstranded 10.0 655120 GGCCGCGTAGCCCGCGCGCGGAGCGTACCCTGCTGCGGCCGTTGGCCGTTAGCGCGGCTTCGGCGGTTGTCTTGGAGAAGCAAGATGGCGGCGACGGCGGCCGCAGTGGTGGCCGAGGAGGACACGGAGCTGCGGGACCTGCTGGTGCAGACGCTGGAGAACAGCGGGGTCCTGAACCGCATCAAG|TTTGCTTCAGATGGTGGATTTCAAAGCCCTTCGTCCTCAGGCGCTCCACAACCGCTCCAGCTCTTCCCGGTCTCCTGCTAAACTTCTTCAGCCTGGACCCATGCACCGCCACTGCTGGCGTTCCCAGCACACGGTATACTCCATTGTTTCCTGACAATCCAGTTGATTCGGCCAGGCTG 4 0.6626944361011371 0.309696785700114 0.344162041885355 Y Y 3.63655728995158 3.4451253122330296 3.4451253122330296 0 0.994428671734286 0.0 Y 0.0 N N 479 3454 ENSG00000213066 ENSG00000112486 + - 6 6 167455906 167553184 coding intron FGFR1OP CCR6 167412670 167525295 + + 0.0 167413002 167548422 + - N 0.862392288188465 0.0144771835017688 N SA470 1 0.0 1.0 1 0 10 N Y 0.0 0.0 18 1.04943938009997 1.11421958874812 1.11421958874812 1.04943938009997 4 2.33333333333333 0.833333333333333 0.9814788668870608 HCT116-unstranded CGHSA0270 10.0 655986 GCACAGTAACATCTCAGAATCAACTGAGTAATATGAAGTATTGACTGACACAAAATAATCTTCACTGGAGTCGAAAACATCGCTGAAATTCATTGATTCCCCGCTCATTGTGGGCAGAAAAAATGCAAGCTGGTTGTAGAAAAAGGAGTGTATGGTTCAGCCCCTTCAGCTCACAGGCAGCGGTAGCAGGAAAGTAGAGGTGACT|CTTGATGCGGTTCAGGACCCCGCTGTTCTCCAGCGTCTGCACCAGCAGGTCCCGCAGCTCCGTGTCCTCCTCGGCCACCACTGCGGCCGCCGTCGCCGCCATCTTGCTTCTCCAAGACAACCGCCGAAGCCGCGCTAACGGCCAACGGCCGCAGCAGGGTACGCTCCGCGCGCGGGCTACGCGGCCGACGCAGCCAAAGCC 19 0.8664400914889059 0.177357657591784 0.470196430307308 Y Y 3.37758638046158 3.63655728995158 3.37758638046158 0 0.995037099514712 0.0 Y 0.0 N Y 3454 479 ENSG00000112486 ENSG00000213066 - + 6 6 167553184 167455906 utr5p coding CCR6 FGFR1OP 167525295 167412670 + + 0.0 167549526 167413002 - + N - 0.862392288188465 N SA470 1 0.0 1.0 1 0 10 N Y 0.0 0.0 78 1.35390636074626 1.30856021469256 1.35390636074626 1.30856021469256 4 - 0.538461538461538 0.95105692116831 HCT116-unstranded CGHSA0270 10.0 656523 AGATCTGAAATTGATCAGTGATAAAATTGGATCACTTGGATTAGGAACTGGAGAAGATGATGACTATGTTGATGATTTTAATAGTACCAGCCATCGCTCAGAGAAAAGTGAGATAAGTATTGGTGAAGAGATAGAAGAAGACCTTTCTGTGGAAATAGATGACATCAATACCAGTGATAAG|AGTCACCTCTACTTTCCTGCTACCGCTGCCTGTGAGCTGAAGGGGCTGAACCATACACTCCTTTTTCTACAACCAGCTTGCATTTTTTCTGCCCACAATGAGCGGGGAATCAATGAATTTCAGCGATGTTTTCGACTCCAGTGAAGATTATTTTGTGTCAGTCAAT 9 1.0 0.7167123537231159 0.7245833874085 Y Y 3.56232542602083 3.37758638046158 3.37758638046158 0 0.993993214236255 0.0 Y 0.0 N Y 479 3454 ENSG00000213066 ENSG00000112486 + - 6 6 167455906 167553184 coding utr5p FGFR1OP CCR6 167412670 167525295 + + 0.0 167447459 167549526 + - N - - N SA470 1 0.0 1.0 1 0 10 N Y 0.0 0.0 11 1.04943938009997 0.926356983668494 1.04943938009997 0.926356983668494 4 - - 0.992612272614827 HCT116-unstranded CGHSA0270 10.0 650667 GCCGCGTAGCCCGCGCGCGGAGCGTACCCTGCTGCGGCCGTTGGCCGTTAGCGCGGCTTCGGCGGTTGTCTTGGAGAAGCAAGATGGCGGCGACGGCGGCCGCAGTGGTGGCCGAGGAGGACACGGAGCTGCGGGACCTGCTGGTGCAGACGCTGGAGAACAGCGGGGTCCTGAACCGCATCAAGGCTGAACTCCGAGCAGCTGTGTTTTTAGCACTAGAGGAGCAAGAAAAAGTAGAG|GGCAGGCCTTATGAAAACAGGAGAGAACGCAGAGACGGAGGGTTTGTGAAGACGGAGGCATAGATTGGAGTGATGCATTCACAAGTCAAGGGGCACCAGGAACTGCAGACCCCACCGGAAATGGGAAGCGAGGCTGGGGACGGTTCCCTGCACAGCCTCCAAATGGAGCCACCCCTGACAGCACCTCGATTTCGGACCTCTG 10 0.417921521957902 0.700992268928193 0.40559031484516905 Y Y 3.11385134970626 3.3980196256232102 3.11385134970626 0 0.9950607051655392 0.0 Y 0.0 N N 479 3454 ENSG00000213066 ENSG00000112486 + - 6 6 167455906 167553184 coding upstream FGFR1OP CCR6 167412670 167525295 + + 0.0 167413601 167506113 + - N - - N SA470 1 1.0 1.0 1 0 10 N Y 0.0 1.0 15 1.48994479890737 1.28912615209811 1.48994479890737 1.28912615209811 4 - - 0.96371768970303 HCT116-unstranded CGHSA0270 10.0 656525 ATGGCGGCGACGGCGGCCGCAGTGGTGGCCGAGGAGGACACGGAGCTGCGGGACCTGCTGGTGCAGACGCTGGAGAACAGCGGGGTCCTGAACCGCATCAAGGCTGAACTCCGAGCAGCTGTGTTTTTAGCACTAGAGGAGCAAGAAAAAGTAGAGA|GTCACCTCTACTTTCCTGCTACCGCTGCCTGTGAGCTGAAGGGGCTGAACCATACACTCCTTTTTCTACAACCAGCTTGCATTTTTTCTGCCCACAATGAGCGGGGAATCAATGAATTTCAGCGATGTTTTCGACTCCAGTGAAGATTATTTTGTGTCAGTCAATACTTCATATTAC 52 0.224599120564744 0.545158148609213 0.631698190137826 Y Y 3.13743300454072 3.42886843174363 3.13743300454072 0 0.9936495864625908 0.0 Y 0.0 N Y 479 3454 ENSG00000213066 ENSG00000112486 + - 6 6 167455906 167553184 coding utr5p FGFR1OP CCR6 167412670 167525295 + + 0.0 167413601 167549526 + - N - - N SA470 1 0.0 1.0 1 0 10 N Y 0.0 0.0 16 1.12069760961293 1.17252177653145 1.17252177653145 1.12069760961293 4 - - 0.980510169450158 HCT116-unstranded CGHSA0270 10.0 1102600 CGGGGCCCAGCCAAGGCCAGTCCCCAGCCAGCACTGACTGTCAAAGCCAAGGCCACAAGCTCAGCGACAACGGCTGCTGCCCCGACACTGCGGCGCCTGGCGCTTTCCTCACGGTCTGGGCTTGAGAGGAAGCCGGAGTCCTTGTCTAAAGTCAGCATCATCAAGAGACTGGGCGCAGCTGCCCTTGTGCCCGAGGCCCAGGACAGCCAGGTCACCAGCACCAAGAG|TGAATACATCAAGACCTGGAGGCCACGGTACTTCCTGCTGAAGAGCGACGGCTCCTTCATTGGGTACAAGGAGAGGCCCGAGGCCCCTGATCAGACTCTACCCCCCTTAAACAACTTCTCCGTAGCAGAATGCCAGCTGATGAAGACCGAGAGGCCGCGACCCAACACCTTTGTCATACGCTGCCTG 15 0.8831957004328421 0.9183227627595 0.474618847374143 N Y 3.1380156463633195 3.87464452633266 3.1380156463633195 2 0.0 0.0 Y 0.0 N Y 3320 13577 ENSG00000160392 ENSG00000105221 + - 19 19 40854434 40791443 utr3p coding C19orf47 AKT2 40825443 40736224 - - 0.0 40827935 40762961 - + N - - N SA470 1 0.0 1.0 1 0 1 Y N 0.0 0.0 17 1.46403271544811 1.19843385999071 1.46403271544811 1.19843385999071 4 - - 0.98918375431153 HCT116-unstranded 10.0 1102704 CACTTCTTCAACGCCCCGCTGGAGGTGACCGAGGAGAACTTCTTTGAGATCTGCGATGAGCTGGGAGTGAAGCGGCCATCTTCTGTGAAAGTATTCTCAGGCAAAAGTGAGCGCAGCTCCTCTGGACTGCTGGAGTGGGAATCCAAGAGCGATGCCCTGGAGACTCTGGGCTTCCTGAACCATTACCAGATGAAAAACCCAA|GACTGACAGGCTCCAACTACCCGGGACTCAGTATTAGCCTTCGCCTCACTGGCTCCTCTGCACAAGAGGAGGCTTCCGGAGTAGCCCTCGGTGAAGCCCCAGACCACAGCTATGAGTCCCTTCGTGTGACGTCTGCGCAGAAACATGTTCTGCATGTCCAGCTCAACCGGCCCAACAAGAGGA 18 1.0 0.991018603648703 0.7187729082101401 Y Y 3.40319013214585 3.65554265739006 3.40319013214585 7 0.994549675811886 0.0 Y 0.0 N Y 69570 8141 ENSG00000104824 ENSG00000104823 + - 19 19 39342979 39322497 coding coding HNRNPL ECH1 39327029 39306068 - - 0.0 39328024 39322156 - + N - 1.84271799356494 N SA470 3 0.0 2.75 2 20 2 Y Y 0.0 0.0 20 1.24378000604441 1.21138990172034 1.24378000604441 1.21138990172034 4 - 73.5 0.913488549617442 HCT116-unstranded 10.0 164683 AGCAAGACCGCGAGGAGGATCTTCCAGGAGCCCACGGAGCCGAAAACTAAAGCAGCTGCCCCCGGCGTGGAGGATGAGCCGCTGCTGAGAGAAAACCCCCGCCGCTTTGTCATCTTCCCCATCGAGTACCATGATATCTGGCAGATGTATAAGAAGGCAGAGGCTTCCTTTTGGACCGCCGAGGAGGT|GCTGGGAGACCGTGAAGTGCAAAGCAGATGGAGTCCAGGCCCTCGGGGAGACAGCACGCCAGTGAGGGAGATGGAGACCAATCACCCACCCAGTGTGCGGTAAGTCAGACGGTGACAAGCTCTGAAGACAAGGAAAGCAGGGAGGAAGGGGCGGGCTAT 29 0.664226650971342 0.845389956830277 0.8299695811944979 Y Y 3.63721963736088 3.44040523365767 3.44040523365767 2 0.993728764548543 0.0 Y 0.00287356321839094 N Y 33906 2413 ENSG00000171848 ENSG00000163009 + - 2 2 10271545 10351851 coding utr5p RRM2 C2orf48 10262455 10281509 + + 0.0 10263657 10281981 + - N - 0.0280936957957135 N SA470 2 1.0 1.61111111111111 1 11 9 N Y 0.0 1.0 18 1.10126354701849 1.0170492757759 1.10126354701849 1.0170492757759 4 - 0.666666666666667 0.9426186747930608 HCT116-unstranded CGHSA0554 10.0 161470 CTCTCCAAGGACATTCAGCACTGGGAATCCCTGAAACCCGAGGAGAGATATTTTATATCCCATGTTCTGGCTTTCTTTGCAGCAAGCGATGGCATAGTAAATGAAAACTTGGTGGAGCGATTTAGCCAAGAAGTTCAGATTACAGAAGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAACATACATTCTGAAATGTATAGTCTTCTTATTGACACTTACATAAAAGATCCCAAAGAAA|GGTGCTGGGAGACCGTGAAGTGCAAAGCAGATGGAGTCCAGGCCCTCGGGGAGACAGCACGCCAGTGAGGGAGATGGAGACCAATCACCCACCCAGTGTGCGGGGATGAGAAGCTCGGGAAGGTCTGACCAGCC 16 0.914631705061167 0.792919267634395 0.473334563108299 Y Y 3.35769173443259 3.4478537991821097 3.35769173443259 2 0.9925570038987122 0.0 Y 0.612964202733037 N Y 33906 2413 ENSG00000171848 ENSG00000163009 + - 2 2 10271545 10351851 coding utr5p RRM2 C2orf48 10262455 10281509 + + 0.0 10264977 10281981 + - N - - N SA470 3 1.0 2.3 1 8 9 N Y 0.0 1.0 10 1.04296135923516 0.5571097943740589 1.04296135923516 0.5571097943740589 4 - - 0.9148666059087388 HCT116-unstranded CGHSA0554 10.0 164687 ATCTTCCCCATCGAGTACCATGATATCTGGCAGATGTATAAGAAGGCAGAGGCTTCCTTTTGGACCGCCGAGGAGGT|GCTGGGAGACCGTGAAGTGCAAAGCAGATGGAGTCCAGGCCCTCGGGGAGACAGCACGCCAGTGAGGGAGATGGAGACCAATCACCCACCCAGTGTGCGGTAAGTCAGACGGTGACAAGCTC 28 1.05903969115535e-05 0.889196603286371 0.836755830274183 Y Y 3.63721963736088 3.44040523365767 3.44040523365767 2 0.987077922077922 0.0 Y 0.0 N Y 33906 2413 ENSG00000171848 ENSG00000163009 + - 2 2 10271545 10351851 coding utr5p RRM2 C2orf48 10262455 10281509 + + 0.0 10263657 10281981 + - N - 0.0280936957957135 N SA470 1 1.0 1.0 1 0 9 N Y 0.0 1.0 9 0.7514504203184991 0.7125822951296109 0.7514504203184991 0.7125822951296109 4 - 1.33333333333333 0.9872316019809008 HCT116-unstranded CGHSA0554 10.0 162715 ATGAAAACTTGGTGGAGCGATTTAGCCAAGAAGTTCAGATTACAGAAGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAACATACATTCTGAAATGTATAGTCTTCTTATTGACACTTACATAAAAGATCCCAAAGAAAG|TCTTCCAGGATCTCAACCAGTTCTCTCACTGCAGAGTCTGGAGAAGCCCAGCCCTCATTGTGAAGGGAGAGCCACCGTGGTGCTCACAGCAAGACACCCAGAGTCCCTTCCAGACAGGGACACCCCTGGAGCGACCCTGTTTCAGAATGAAGTTATCTG 11 0.0114271161291421 0.8457949265434721 0.8039146473507359 Y Y 3.35769173443259 3.4618274629965096 3.35769173443259 1 0.993126059920859 0.0 Y 0.0 N Y 33906 2413 ENSG00000171848 ENSG00000163009 + - 2 2 10271545 10351851 coding coding RRM2 C2orf48 10262455 10281509 + + 0.0 10264977 10350437 + - N - 0.0681733455884148 N SA470 3 0.0 2.6666666666666696 1 11 9 N Y 0.0 0.0 12 0.945791046262938 1.05591740096479 1.05591740096479 0.945791046262938 4 - 7.83333333333333 0.925289088370611 HCT116-unstranded CGHSA0554 10.0 161472 TGAGGGTTTACACTGTGATTTTGCTTGCCTGATGTTCAAACACCTGGTACACAAACCATCGGAGGAGAGAGTAAGAGAAATAATTATCAATGCTGTTCGGATAGAACAGGAGTTCCTCACTGAGGCCTTGCCTGTGAAGCTCATTGGGATGAATTGCACTCTAATGAAGCAATACATTGAGTTTGTGGCAGACAGACTTATGCTGGAACTGGGTTTTAGCAAGGT|GCTGGGAGACCGTGAAGTGCAAAGCAGATGGAGTCCAGGCCCTCGGGGAGACAGCACGCCAGTGAGGGAGATGGAGACCAATCACCCACCCAGTGTGCGGGGATGAGAAGCTCGGGAAGGTCTGACCAGCCTTACGTCTTGAAAGGGAATCCCCTGCTTCTGCGTGTCAGG 239 0.726227086372918 0.7607213798261541 0.559504187554307 Y Y 3.51360402781852 3.44040523365767 3.44040523365767 0 0.9825003314331172 0.0 Y 0.457510274426621 N Y 33906 2413 ENSG00000171848 ENSG00000163009 + - 2 2 10271545 10351851 coding utr5p RRM2 C2orf48 10262455 10281509 + + 0.0 10269281 10281981 + - N - - N SA470 2 0.5642458100558659 1.25862068965517 1 45 9 N Y 0.0 0.5642458100558659 174 1.327994277287 1.15956573480182 1.327994277287 1.15956573480182 4 - - 0.9670622854053272 HCT116-unstranded CGHSA0554 10.0 167799 GTAAGAGAAATAATTATCAATGCTGTTCGGATAGAACAGGAGTTCCTCACTGAGGCCTTGCCTGTGAAGCTCATTGGGATGAATTGCACTCTAATGAAGCAATACATTGAGTTTGTGGCAGACAGACTTATGCTGGAACTGGGTTTTAGCAAG|TTAGAACAACACTGGATTGGCAAGAGGGAGACTGAGGCGGGAACCCAGGCAGAGGCTGCTGTGAGTCCAGCTAGGATGAGACGTGGGTGCCAGACAGTGGGCCTGGGGCAGACCCCAGGGACTCCGCAGTGA 7 0.0516257682431963 0.855859737703186 0.989732062389567 Y Y 3.50425715662364 3.4320914322326805 3.4320914322326805 3 0.992450731087095 0.0110457724094088 Y 0.0110457724094088 N N 33906 2413 ENSG00000171848 ENSG00000163009 + - 2 2 10271545 10351851 coding intron RRM2 C2orf48 10262455 10281509 + + 0.0 10269281 10285655 + - N - 0.0683062456682405 N SA470 2 0.13445378151260498 1.54545454545455 1 6 9 N Y 0.0 0.13445378151260498 11 0.965225108857382 0.7708844829129431 0.965225108857382 0.7708844829129431 4 - 8.54545454545454 0.935811672081146 HCT116-unstranded CGHSA0554 10.0 162712 AACTAAAGCAGCTGCCCCCGGCGTGGAGGATGAGCCGCTGCTGAGAGAAAACCCCCGCCGCTTTGTCATCTTCCCCATCGAGTACCATGATATCTGGCAGATGTATAAGAAGGCAGAGGCTTCCTTTTGGACCGCCGAGGAGGTGGACCTCTCCAAGGACATTCAGCACTGGGAATCCCTGAAACCCGAGGAGAGATATTTTATATCCCATGTTCTGGCTTTCTTTGCAGCAAGCGATGGCATAGTAAATGAAAACTT|GTCTTCCAGGATCTCAACCAGTTCTCTCACTGCAGAGTCTGGAGAAGCCCAGCCCTCATTGTGAAGGGAGAGCCACCGTGGTGCTCACAGCAAGACACCCAGAGTCCCTTCCAGACAGGGACACCCCTGGAGCGACCCTGTTTCAGAATGAAGTTATCTGGGTGGGAACTCACCAAGAATGCACAGAGGGCGCTGGGCTCCAAGCTTC 12 0.9036290833328772 0.682259638399248 0.736669081631109 Y Y 3.49896801659482 3.44247137319745 3.44247137319745 3 0.99520260253665 0.0 Y 0.00693872508647664 N Y 33906 2413 ENSG00000171848 ENSG00000163009 + - 2 2 10271545 10351851 coding intron RRM2 C2orf48 10262455 10281509 + + 0.0 10263979 10350437 + - N - 0.0683062456682405 N SA470 3 0.0 1.51612903225806 1 15 9 N Y 0.0 0.0 31 1.61302719533885 1.35390636074626 1.61302719533885 1.35390636074626 4 - 3.03225806451613 0.950091080360378 HCT116-unstranded CGHSA0554 10.0 614378 CGCTCTTGTTGCCCACGAGGATGATGGGCACATCATCTGTTTGCCGTGCACGCCGCAGCTGGACCCGCAGTTCTGAGGCCTTCTCGAAGCTGCCCTTGTCCGTCACTGAGTACACAATGACATAGGCATCCCCCATGGCCATGCAGTGGCCGGGCAACCAGCGGCCCCCGT|CCTGAACCCGCACCTGCTCTACTACGTTCAACTCCTCTAGCGTCAGTGGATGCTCCGGGTCATTGATGGAGCGAATCAGATGTGGGAAGTGAAGGAAAAGGGACTCTGCGCCCTTGCCCACTTAGAACCCTCTGCCAGGAACGCCCTGCTGGGATGCGGCTCCACCAGCTGCTCGATATCACTGCTCCCCCCA 4 0.5986485786135849 0.908443019739974 0.167847360618377 Y Y 3.04743877366054 3.4482245215427 3.04743877366054 2 0.99416806857326 0.0 Y 0.0 N Y 558 6517 ENSG00000166592 ENSG00000166595 - + 16 16 66959547 66968326 coding intron RRAD FAM96B 66955582 66965959 - - 0.0 66957623 66967890 + - N 3.19155747600602 1.66114559665681 N SA470 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 6 0.9781811505870108 0.7773625037777572 0.9781811505870108 0.7773625037777572 4 19.6666666666667 525.5 0.9803443563660008 HCT116-unstranded CGHSA0477 10.0 613589 AATGACCCGGAGCATCCACTGACGCTAGAGGAGTTGAACGTAGTAGAGCAGGTGCGGGTTCAGGTTAGCGACCCCGAGAGTACAGTGGCTGTGGCTTTCACACCAACCATTCCGCACTGCAGCATGGCCACCCTTATTGGTCTGTCCATCAAGGTCAAGCTTCTGCGCTCCCTTCCTCAGCGTTTCAAGA|CGGTCCCGGACGCGATGACCCTGAACGGCGGCGGCAGCGGAGCGGGCGGGAGCCGCGGTGGGGGCCAGGAGCGCGAGCGCCGTCGGGGCAGCACACCCTGGGGCCCCGCCCCGCCGCTGCACCGCCGCAGCATGCCGGTGGACGAGCGCGACCTGCAGGCGGCGCTGACCCCGGGTGCCCTGAC 12 1.0 0.694079722784688 0.0729116237422073 Y Y 3.38912318237562 3.2739892081275896 3.2739892081275896 0 0.9945797101449272 0.0 Y 0.983739130434783 N Y 6517 558 ENSG00000166595 ENSG00000166592 + - 16 16 66968326 66959547 coding utr5p FAM96B RRAD 66965959 66955582 - - 0.0 66967517 66959097 - + N - - N SA470 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 27 1.21138990172034 1.08182948442405 1.21138990172034 1.08182948442405 4 - - 0.974281752269776 HCT116-unstranded CGHSA0477 10.0 614380 GCGCCGCCTGCAGGTCGCGCTCGTCCACCGGCATGCTGCGGCGGTGCAGCGGCGGGGCGGGGCCCCAGGGTGTGCTGCCCCGACGGCGCTCGCGCTCCTGGCCCCCACCGCGGCTCCCGCCCGCTCCGCTGCCGCCGCCGTTCAGGGTCATCGCGTCCGGGACCGT|CTGAACCCGCACCTGCTCTACTACGTTCAACTCCTCTAGCGTCAGTGGATGCTCCGGGTCATTGATGGAGCGAATCAGATGTGGGAAGTGAAGGAAAAGGGACTCTGCGCCCTTGCCCACTTAGAACCCTCTGCCAGGAACGCCCTGCTGGGATGCGGCTCCACCAGCTGCTCGATATCACTGCTCCCCCCACCGCAAGCCCCCGGAACCCGCCCGCGCCCAGCAGCGG 9 0.8301504946206559 0.503175702112203 0.376560769822436 Y Y 3.29078464484691 3.46079439322662 3.29078464484691 1 0.993991115979068 0.0 Y 0.0 N Y 558 6517 ENSG00000166592 ENSG00000166595 - + 16 16 66959547 66968326 utr5p coding RRAD FAM96B 66955582 66965959 - - 0.0 66959097 66967890 + - N 20.4327625520612 1.65852789983782 N SA470 1 0.0 1.0 1 0 2 N Y 0.0 0.0 11 1.10126354701849 1.37981844420552 1.37981844420552 1.10126354701849 4 0.545454545454545 286.636363636364 0.9873996950561592 HCT116-unstranded CGHSA0477 10.0 611848 CCGCGAACTGCCCCTCCCCGCCCCGCCTCCCGGCGCGGGTGGCCGAGGCGTAGCGCTGCGACCCCCGCACCCCTGCGAACATGGCGCTGCGAGTGGTGCGGAGCGTGCGGGCCCTGCTCTGCACCCTGCGCGCGGTCCCGTCACCCGCCGCGCCCTGCCCGCCGAGGCCCTGGCAGCTGGGGGTGGGCGCCGTCCGTACGCTGCGCACTGGACCCGCTCTGCTCTCGG|GTCCAAGGGTGGGGAAGGACTTCTCCAGCTGCCTGCATCTGGCCGAGGAAGATACCAAAAAAGGCGAGGGTAGGGGAAGGTGCCTGCAGCGACTGCTTGGTGTGTGTTAACCTCTCCCACTGGAGCCTCCAGACCAAGCCTCCTACTGAGGGGGGCCCAGAGAAGGATCAGAGCAGCCCCTCCCAGACTCAGGCAGCCCCCCAGGGCCCCAGCACTGCTTCCAGGGCAATTAGCGAC 94 0.8564767330929058 0.617831005314198 0.6745473860189821 Y Y 3.28336658454601 3.5429693362217702 3.28336658454601 0 0.9956234470295908 0.0 Y 0.0 N Y 11166 2829 ENSG00000140905 ENSG00000166455 + - 16 16 81130008 81110872 coding coding GCSH C16orf46 81115566 81087102 - - 0.0 81129736 81095743 - + N - - N SA470 4 0.122881355932203 2.51960784313725 1 99 3 N Y 0.122881355932203 0.0 102 1.52881292409626 1.56120302842033 1.56120302842033 1.52881292409626 4 - - 0.9177484090119808 HCT116-unstranded 10.0 673214 GACCCAGCACCTCTTAATTCACCCAAGCTGAAGCCAAATGCGAACCCTGAGCAGCCTGGATTCATTGGGGATGACTTTGACTTAGCAGATGCCTTACATGACAAAGGAAACTACGAGCCAGCACCACTGAACCCACCCAAACCAAAGCCAAATCCAAACCCCAAGCAGCCTGATTCCACCGGGGATGACTTTGATTTCACAGATGTTTCTTCATGGTGAACGAAACA|ATGGTGGTTTCGATTTATCCGATGCCCTTCCTGACAATGAAAACAAGAAACCCACTGCAATCCCCAAGAAACCCAGTGCTGGGGATGACTTTGACTTAGGAGATGCTGTTGTTGATGGAGAAAATGACGACCCACGACCACCGAACCCACCCAAACCGAT 11 1.0 0.955191834133716 0.731206873397229 Y Y 3.31998211938081 3.50744965188915 3.31998211938081 0 0.0 0.0 Y 0.0 N Y 451 4377 ENSG00000223773 ENSG00000002586 + - X X 2575270 2659350 intron coding CD99P1 CD99 2527389 2609220 + + 0.0 2544683 2632463 + - N - - N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 10 1.36038438161107 0.939313025398123 1.36038438161107 0.939313025398123 4 - - 0.9942315411823952 HCT116-unstranded 10.0 656514 AAGGGACGAACGCTGCTGGCTGGAGTTTGCTGGACACTTTCATTCCACCTCCTAACAAAGAGAATTCCTATTCCTTGAGGTCCCTTGGGGCAGCAGTTAAAGACTACACGATCCAGGAGCACCTAGGACCTGGGGCCACCTTCCTGCCCGCTTTATTGGATGGAGCACTGCCTCCCCAGTTTCTGGGACACCTTGGGGTGTGGCCTTG|AGACCTGTCGGCCATGGAGCCTAATGATAGTACCAGTACCGCTGTGGAGGAGCCTGACAGCTTGGAGGTGTTGGTGAAGACCTTGGACTCTCAAACTCGTACCTTTATTGTGGGGGCCCAGATGAATGTAAAAGAGTTTAAGGAGCACATTGCTGCCTCTGTCAGCATCCCATCTGAAAAACAACGGC 17 1.0 0.969284319216924 0.358822493442294 Y Y 3.18871505582277 3.762733552573681 3.18871505582277 4 0.0 0.0 Y 0.0 N N 2113 52228 ENSG00000204439 ENSG00000204463 + - 6 6 31628549 31620482 intron utr5p C6orf47 BAG6 31626075 31606805 - - 0.0 31628098 31619553 - + N - - N SA470 1 0.0 1.0 1 0 4 N Y 0.0 0.0 22 1.36038438161107 1.18547781826108 1.36038438161107 1.18547781826108 4 - - 0.9904065689490852 HCT116-unstranded 10.0 656101 GCCCTCTAAATCAAGGGACGAACGCTGCTGGCTGGAGTTTGCTGGACACTTTCATTCCACCTCCTAACAAAGAGAATTCCTATTCCTTGAGGTCCCTTGGGGCAGCAGTTAAAGACTACACGATCCAGGAGCACCTAGGACCTGGGGCCACCTTCCTGCCCGCTTTATTGGATGGAGCACTGCCTCCCCAGTTTCTGGGACACCTTGGGGTGTGGCCTTG|CACGAGGGCCGGGAGGAGGATCAGCGGTTGATCAACTTGGTAGGGGAGAGCCTGCGACTGCTGGGCAACACCTTTGTTGCACTGTCTGACCTGCGCTGCAATCTGGCCTGCACGCCCCCACGACACCTGCATGTGGTCCGGCCTATGTCTCACTACACCACCCCCATGGTGCTCCAGCAGGCAGCCATTCCCATACAGATCAATGTGGGAACCACTGTGACCATGAC 14 0.905090343279854 0.949571975984638 0.80804902708352 Y Y 3.18871505582277 3.56232542602083 3.18871505582277 1 0.0 0.0 Y 0.0 N N 2113 52228 ENSG00000204439 ENSG00000204463 + - 6 6 31628549 31620482 intron coding C6orf47 BAG6 31626075 31606805 - - 0.0 31628098 31613381 - + N - - N SA470 1 0.0 1.0 1 0 4 N Y 0.0 0.0 9 1.1919558391258898 1.46403271544811 1.46403271544811 1.1919558391258898 4 - - 0.9932609216694972 HCT116-unstranded 10.0 656512 GCTGCTGGCTGGAGTTTGCTGGACACTTTCATTCCACCTCCTAACAAAGAGAATTCCTATTCCTTGAGGTCCCTTGGGGCAGCAGTTAAAGACTACACGATCCAGGAGCACCTAGGACCTGGGGCCACCTTCCTGCCCGCTTTATTGGATGGAGCACTGCCTCCCCAGTTTCTGGGACACCTTGGGGTGTGGCCTTG|AGACCTGTCGGCCATGGAGCCTAATGATAGTACCAGTACCGCTGTGGAGGAGCCTGACAGCTTGGAGGTGTTGGTGAAGACCTTGGACTCTCAAACTCGTACCTTTATTGTGGGGGCCCAGATGAATGTAAAAGAGTTTAAGGAGCACATTGCTGCCTCTGTCAGCATCCCATCTGAAAAACAACGGCTCATTTACCAGGGACGAGTTCTGCAAGATGATAAGAAGCTTCAGGAATACAATGTTGGGGGAAAGGTTATCCACCTGGTGGAACGGGCTCCTCCTCAG 17 3.5705380307814697e-06 0.969284319216924 0.358822493442294 Y Y 3.18871505582277 3.762733552573681 3.18871505582277 4 0.0 0.0 Y 0.0 N N 2113 52228 ENSG00000204439 ENSG00000204463 + - 6 6 31628549 31620482 intron utr5p C6orf47 BAG6 31626075 31606805 - - 0.0 31628098 31619553 - + N - - N SA470 1 0.0 1.0 1 0 4 N Y 0.0 0.0 5 0.9781811505870108 0.90692292107405 0.9781811505870108 0.90692292107405 4 - - 0.983739869623792 HCT116-unstranded 10.0 656513 AGCCCTCTAAATCAAGGGACGAACGCTGCTGGCTGGAGTTTGCTGGACACTTTCATTCCACCTCCTAACAAAGAGAATTCCTATTCCTTGAGGTCCCTTGGGGCAGCAGTTAAAGACTACACGATCCAGGAGCACCTAGGACCTGGGGCCACCTTCCTGCCCGCTTTATTGGATGGAGCACTGCCTCCCCAGTTTCTGGGACACCTTGGGGTGTGGCCTTG|ATGTTGGGGGAAAGGTTATCCACCTGGTGGAACGGGCTCCTCCTCAGACTCACCTCCCTTCTGGGGCATCTTCTGGGACGGGGTCTGCCTCAGCCACTCATGGTGGGGGATCCCCCCCTGGTACTCGGGGGCCTGGGGCCTCTGTTCATGACCGGAATGCCAACAGCT 7 1.0 0.92514719184027 0.6878473303056399 Y Y 3.18871505582277 3.53768019619294 3.18871505582277 1 0.0 0.0 Y 0.0 N N 2113 52228 ENSG00000204439 ENSG00000204463 + - 6 6 31628549 31620482 intron coding C6orf47 BAG6 31626075 31606805 - - 0.0 31628098 31617172 - + N - - N SA470 1 0.0 1.0 1 0 4 N Y 0.0 0.0 6 1.37981844420552 0.913400941938865 1.37981844420552 0.913400941938865 4 - - 0.994848257334812 HCT116-unstranded 10.0 656098 AAATCATAGCCCTCTAAATCAAGGGACGAACGCTGCTGGCTGGAGTTTGCTGGACACTTTCATTCCACCTCCTAACAAAGAGAATTCCTATTCCTTGAGGTCCCTTGGGGCAGCAGTTAAAGACTACACGATCCAGGAGCACCTAGGACCTGGGGCCACCTTCCTGCCCGCTTTATTGGATGGAGCACTGCCTCCCCAGTTTCTGGGACACCTTGGGGTGTGGCCTTG|ATCAATGTGGGAACCACTGTGACCATGACAGGAAATGGGACTCGGCCCCCCCCAACTCCCAATGCAGAGGCACCTCCCCCTGGTCCTGGGCAGGCCTCATCCGTGGCTCCGTCTTCTACCAATGTCGAGTCCTCAGCTGAGGGGGCTCCCCCGCCAGGTCCAGCTCCCCCGCCAGCCACCAGCCA 5 0.545045400991536 0.8901206215464941 0.677592896045438 Y Y 3.18871505582277 3.22167408707565 3.18871505582277 0 0.0 0.0 Y 0.0 N N 2113 52228 ENSG00000204439 ENSG00000204463 + - 6 6 31628549 31620482 intron coding C6orf47 BAG6 31626075 31606805 - - 0.0 31628098 31612975 - + N - - N SA470 1 0.0 1.0 1 0 4 N Y 0.0 0.0 9 1.3215162564221898 1.21138990172034 1.3215162564221898 1.21138990172034 4 - - 0.9937791697056568 HCT116-unstranded 10.0 382605 GACTGTAATAATGAGATTTGTATTGAACGATGTCTTGAGAGGGGAAAGAGTAGTGGTAGGAGTGATGACAACAGAGAGAGCTTGGAAAAGAGAATTCAGACCTACCTTCAGTCAACAAAGCCAATTATTGACTTATATGAAGAAATGGGGAAAGTCAAGAAAATAGATGCTTCTAAATCTGTTGATGAA|CCCGCGCAAGTGGCAGAACAGCATCCGCCACAATCTCACGCTCAACGACTGCTTCGTCAAGGTGCCCCGCGAGCCGGGCAACCCGGGCAAGGGCAACTACTGGACGCTGGACCCCGCGGCCGCAGACATGTTCGACAACGGCAGCTTCCTGCGGCGCCGCAAGCGCTTCAAGCGCGCCGAGCTGCCCGCGCACGCGGCCGCGGCG 53 1.0 0.994237290818528 0.452918958345276 N Y 3.25360004855864 3.4823005609514905 3.25360004855864 1 0.0 0.0 Y 0.0 N N 8177 593 ENSG00000162368 ENSG00000186790 + - 1 1 47844511 47883723 coding coding CMPK1 FOXE3 47799469 47881744 + + 0.0 47840965 47882320 + - N - 0.273466764160844 N SA470 4 0.118918918918919 1.69230769230769 1 5 2 N N 0.0 0.118918918918919 13 1.01057125491108 1.19843385999071 1.19843385999071 1.01057125491108 4 - 5.76923076923077 0.9661303355312608 HCT116-unstranded 10.0 382607 GCCAATGCTCAGAAGAATAAATTCTTGATTGATGGGTTTCCAAGAAATCAAGACAACCTTCAAGGATGGAACAAGACCATGGATGGGAAGGCAGATGTATCTTTCGTTCTCTTTTTTGACTGTAATAATGAGATTTGTATTGAACGATGTCTTGAGAGGGGAAAGAGTAGTGGTAGGAGTGATGACAACAGAGAGAGCTTGGAAAAGAGAATTCAGACCTACCTTCAGTCAACAAAGCCAATTATTGACTTATATGAAGAAATGGGGAAAGTCAAGAAAATAGATGCTTCTAAATCTGTTGATGAA|CCCGCGCAAGTGGCAGAACAGCATCCGCCACAATCTCACGCTCAACGACTGCTTCGTCAAGGTGCCCCGCGAGCCGGGCAACCCGGGCAAGGGCAACTACTGGACGCTGGACCCCGCGGCCGCAGACATGTTCGACAACGGCAGCTTCCTGCGGCGCCGCAAGCGCTTCAAGCGCGCCGAGCTGCCCGCGCACGCGGCCGCGGCGCCAGGGCCGCCGCT 53 0.0010350154185156696 0.994237290818528 0.452918958345276 N Y 3.25360004855864 3.4823005609514905 3.25360004855864 1 0.0 0.0 Y 0.0 N N 8177 593 ENSG00000162368 ENSG00000186790 + - 1 1 47844511 47883723 coding coding CMPK1 FOXE3 47799469 47881744 + + 0.0 47840965 47882320 + - N - 0.273466764160844 N SA470 4 0.15086206896551702 2.1666666666666696 1 15 2 N N 0.0 0.15086206896551702 24 1.21786792258515 1.37981844420552 1.37981844420552 1.21786792258515 4 - 3.125 0.932370145191328 HCT116-unstranded 10.0 377154 TTTACTTTGAGAAAATCTTAAAAGAAACAAAACAATCAGTGTGGATAAGAAATATTCAGCTTGGTTTCTTTGGAAGTATATTTGGATTAATGGGTGTATACATTTATGATGGAGAACTGGTATCAAAGAATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTGGTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAACGGCTTAAT 21 0.492060798726288 0.671633197727433 0.52307834824163 N Y 3.73233517440054 3.6669556681247206 3.6669556681247206 0 0.0 0.0 Y 0.00303951367781141 N Y 1259 5904 ENSG00000117620 ENSG00000156875 + - 1 1 100492535 100548933 coding coding SLC35A3 HIAT1 100435345 100503653 + + 0.0 100480976 100515465 + - N - - N SA470 1 0.0 1.0 1 0 2 Y N 0.0 0.0 15 0.984659171451826 0.900444900209235 0.984659171451826 0.900444900209235 4 - - 0.992612272614827 HCT116-unstranded 10.0 382795 CAGTGGCCCTCAGATTCTCAGCTTGATTCTAAGGAACTTTCAGCTGGTTCTCAATTTGTAGGACTCATGGCAGTTCTCACAGCATGTTTTTCAAGTGGCTTTGCTGGGGTTTACTTTGAGAAAATCTTAAAAGAAACAAAACAATCAGTGTGGATAAGAAATATTCAGCTTG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTGGTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAACGGCTTAAT 2 0.4171099888174311 0.26761510521576604 0.449278854840501 N Y 3.4487190350826604 3.6669556681247206 3.4487190350826604 0 0.0 0.0 Y 0.0 N Y 1259 5904 ENSG00000117620 ENSG00000156875 + - 1 1 100492535 100548933 coding coding SLC35A3 HIAT1 100435345 100503653 + + 0.0 100477089 100515465 + - N - - N SA470 1 0.0 1.0 1 0 2 Y N 0.0 0.0 6 0.7838405246425719 0.945791046262938 0.945791046262938 0.7838405246425719 4 - - 0.991137792807537 HCT116-unstranded 10.0 733707 GAGGTTGACAGGTCGGCGGCTACGGCCCCGCAGGGAGCCGTAATGGAAGACCTCATTGGCACTGTTGGAGCTGTAGAGGATGAGGATGGTGATGAGGGCAAAGAGGATCACGAACACTGCTGACCGCTGCTCTTTGTTGCTACTCATTTCTCTCCGGCGTCTGCTGAGGGGTAGGTGTCGGCGTCCTGCAGGTGGCCCTGGGGGCAGGGATGTGGGTTCA|CACCGGTTCTTGCCCGTCTCGTCCTGGAAGATCTGGTCGCAGTAGGCCATCATGCGCTCCGTGAAGGTGTACACCTGCAGGCCGGGGTACATCCTGGTGAGCTGCAGCAGCGTGCGGTAGGTGCGGCCGCCGAGCACCCGGTCCATGTGCCTGCCCTGGCCCCACACCATGTAGAGCGTGTCTCGGGCCTTCTGGAAGTAGTGTGAATAGTTGCGCAGCAGCAGCGGCA 97 0.901990420438765 0.904403319712287 0.433164634074355 Y Y 3.17511211436896 3.61720120015252 3.17511211436896 0 0.0 0.0 Y 0.0 N Y 3587 6830 ENSG00000160408 ENSG00000136840 - + 9 9 130667687 130679317 coding intron ST6GALNAC6 ST6GALNAC4 130647600 130670165 - - 0.0 130658611 130674547 + - N - 0.963793099331058 N SA470 2 0.0132743362831858 1.42307692307692 1 33 1 Y Y 0.0132743362831858 0.0 78 1.46403271544811 1.46403271544811 1.46403271544811 1.46403271544811 4 - 15.8589743589744 0.9231003765429208 HCT116-unstranded 10.0 1136783 CTTCAAACCACCTAAGGTTGCATTTACAACAAGAATTTATCATCCAAATATTAACAGTAATGGCAGCATTTGTCTTGATATTCTACGATCACAGTGGTCTCCAGCACTAACTATTTCAAAAGTACTCTTGTCCATCTGTTCTCTGTTGTGTGATCCCAATCCAGATGATCCTTTAGTGCCTGAGATTGCTCGGATCTACAAAACAGATAGAGAAAA|AGTGAAGACATTTCCACCTGGACACCTGACCATGTGCCTGCCCTGAGCAGCGAGGCCCACCAGGCATCTCTGTTGTGGGCAGCAGGGCCAGGTCCTGGTCTGTGGACCCTCGGCAGTTGGCAGGCTCCCTCTGCAGTGGGGTCTGGGCCTCGGCCCCACCATGTCGAGCCTCGGCGGTGGCTCCCAGGATGCCGGCGGCAGTAGCAGCAGCAG 106 1.0 0.8248479358055921 0.469005922919064 Y Y 3.58424216889964 3.47080361183081 3.47080361183081 1 0.9953160825417622 0.0 Y 0.0 N Y 6054 2915 ENSG00000131508 ENSG00000171604 + - 5 5 139008018 139063467 coding utr5p UBE2D2 CXXC5 138906016 139026884 + + 0.0 139003046 139059949 + - N - - N SA470 3 0.0904761904761905 1.1578947368421102 1 5 4 Y Y 0.0 0.0904761904761905 57 1.3862964650703302 1.36038438161107 1.3862964650703302 1.36038438161107 4 - - 0.978570931895258 HCT116-unstranded 10.0 1132228 GCCCCCGTCCCCGCCCCGGGGGCCGCCGCCACCCGCCTCCCACCATGGCTCTGAAGAGAATCCACAAGGAATTGAATGATCTGGCACGGGACCCTCCAGCACAGTGTTCAGCAGGTCCTGTTGGAGATGATA|AGTGAAGACATTTCCACCTGGACACCTGACCATGTGCCTGCCCTGAGCAGCGAGGCCCACCAGGCATCTCTGTTGTGGGCAGCAGGGCCAGGTCCTGGTCTGTGGACCCTCGGCAGTTGGCAGGCTCCCTCTGCAGTGGGGTCTGGGCCTCGGCCCCACCATGTCGAGCCTCGGC 10 0.00418018776999271 0.844084463961114 0.179889334746734 Y Y 3.65760879692984 3.47080361183081 3.47080361183081 5 0.992448839039748 0.0 Y 0.0 N Y 6054 2915 ENSG00000131508 ENSG00000171604 + - 5 5 139008018 139063467 coding utr5p UBE2D2 CXXC5 138906016 139026884 + + 0.0 138980020 139059949 + - N - - N SA470 1 0.23809523809523805 1.0 1 0 4 N Y 0.23809523809523805 0.0223463687150838 35 1.08830750528886 1.15956573480182 1.15956573480182 1.08830750528886 4 - - 0.969003162271989 HCT116-unstranded 10.0 1133820 ACTGTTAAGAGTTGGAAGTTCAGAAGAAAAAAAAAAGGAATTGAATGATCTGGCACGGGACCCTCCAGCACAGTGTTCAGCAGGTCCTGTTGGAGATGATATGTTCCATTGGCAAGCTACAATAATGGGGCCAAATGACAGTCCCTATCAGGGTGGAGTATTTTTCTTGACAATTCATTTCCCAACAGATTACCCCTTCAAACCACCTAAGGTTGCATTTACAACAAGAATTTATCATCCAAATATTAACAGTAATGGCAGCATTTGTCTTGATATTCTACGATCACAGTGGTCTCCAGCACTAACTATTTCAAAAG|AGTGAAGACATTTCCACCTGGACACCTGACCATGTGCCTGCCCTGAGCAGCGAGGCCCACCAGGCATCTCTGTTGTGGGCAGCAGGGCCAGGTCCTGGTCTGTGGACCCTCGGCAGTTGGCAGGCTCC 8 0.00394934974043064 0.5968378865788779 0.708238625483703 Y Y 3.63296356710195 3.47080361183081 3.47080361183081 0 0.9922050168161428 0.0 Y 0.0 N Y 6054 2915 ENSG00000131508 ENSG00000171604 + - 5 5 139008018 139063467 coding utr5p UBE2D2 CXXC5 138906016 139026884 + + 0.0 138994551 139059949 + - N - - N SA470 1 0.0267857142857143 1.0 1 0 4 N Y 0.0 0.0267857142857143 8 0.7514504203184991 0.72553833685924 0.7514504203184991 0.72553833685924 4 - - 0.991240892989256 HCT116-unstranded 10.0 1135821 CTCAGGCTCCCTAGCCCCTTCCCCGTCCCTTCCCCGCCCCCGTCCCCGCCCCGGGGGCCGCCGCCACCCGCCTCCCACCATGGCTCTGAAGAGAATCCACAAGGAATTGAATGATCTGGCACGGGACCCTCCAGCACAGTGTTCAGCAGGTCCTGTTGGAGATGATA|AGTGAAGACATTTCCACCTGGACACCTGACCATGTGCCTGCCCTGAGCAGCGAGGCCCACCAGGCATCTCTGTTGTGGGCAGCAGGGCCAGGTCCTGGTCTGTGGACCCTCGGCAGTTGGCAGGCTCCCTCTGCAGTGGGGTCTGGGCCTCGGCCCCACCATGTCGAGCCTCGGCGGTGGCTCCCAGGATGCCGGCGGCAGTAGCAGCAGCAGCACCAATGGC 10 0.6528102382661851 0.844084463961114 0.179889334746734 Y Y 3.65760879692984 3.47080361183081 3.47080361183081 0 0.994027290687168 0.0 Y 0.0 N Y 6054 2915 ENSG00000131508 ENSG00000171604 + - 5 5 139008018 139063467 coding utr5p UBE2D2 CXXC5 138906016 139026884 + + 0.0 138980020 139059949 + - N - - N SA470 1 0.38953488372093 1.0 1 0 4 N Y 0.38953488372093 0.14356435643564402 11 1.11421958874812 1.30856021469256 1.30856021469256 1.11421958874812 4 - - 0.9863807927265872 HCT116-unstranded 10.0 860656 GACTGGGCCAGGCGCCGGGGCAGGAAGGGAGGCGGCCGCCGTGCCATTCTTAAAGGCGCCCGAGTGTAGGCGACAGGCCGCTGACGGCCGGAAGGAAAATGAGTGAGTCTTTGGTTGTTTGTGATGTTGCCGAAGATTTAGTGGAAAAGCTGAGAAAGTTTCGTTTTCGCAAAGAAACGAACAACGCTGCTATTATAA|GTATATGAGTAGACCAGTGATGAGTGGCCCAGGACTCTATGACCCTACAACCATCATGAATGCAGATATTCTAGCATATTGTCAGAAGGAAGGATGGTGCAAATTAGCTTTTTATCTTCTAGCATTTTTTTACTACCTATATGGCATGATCTATGTTTTGGTGAGCTCTTAGAACAACACACAGAAGAATTGGTCCAGTTAAGTGCATGCAAAAAGCCACCAAATG 19 3.33686487772034e-05 0.631201964837923 0.5932160170254599 N Y 3.41319935075004 3.47758982994594 3.41319935075004 0 0.0 0.0 Y 0.0 N Y 3216 7500 ENSG00000197045 ENSG00000100528 + - 14 14 54955914 54908149 coding coding GMFB CNIH 54941202 54893654 - - 0.0 54950389 54897122 - + N - - N SA470 1 0.0 1.0 1 0 2 N N 0.0 0.0 5 0.608933961292576 0.8356646915610891 0.8356646915610891 0.608933961292576 4 - - 0.991240892989256 HCT116-unstranded 10.0 860655 CTGGGCCAGGCGCCGGGGCAGGAAGGGAGGCGGCCGCCGTGCCATTCTTAAAGGCGCCCGAGTGTAGGCGACAGGCCGCTGACGGCCGGAAGGAAAATGAGTGAGTCTTTGGTTGTTTGTGATGTTGCCGAAGATTTAGTGGAAAAGCTGAGAAAGTTTCGTTTTCGCAAAGAAACGAACAACGCTGCTATTATAA|GTATATGAGTAGACCAGTGATGAGTGGCCCAGGACTCTATGACCCTACAACCATCATGAATGCAGATATTCTAGCATATTGTCAGAAGGAAGGATGGTGCAAATTAGCTTTTTATCTTCTAGCATTTTTTTACTACCTATATGGCATGATCTATGTTTTGGTGAGCTCTTAGAACAACACACAGAAGAATTGGTCCAGTTA 20 0.97733416117308 0.538823255501439 0.530664421513247 N Y 3.41319935075004 3.47758982994594 3.41319935075004 0 0.0 0.0 Y 0.0 N Y 3216 7500 ENSG00000197045 ENSG00000100528 + - 14 14 54955914 54908149 coding coding GMFB CNIH 54941202 54893654 - - 0.0 54950389 54897122 - + N - - N SA470 2 0.0 1.04166666666667 1 1 2 N N 0.0 0.0 24 1.28912615209811 1.34742833988145 1.34742833988145 1.28912615209811 4 - - 0.9909758426747808 HCT116-unstranded 10.0 377892 CTGTCAGATCCTTTGGCATCCGGAGAAATGAAAAGATTGCTGTCCACTGCACAGTTCGAGGGGCCAAGGCAGAAGAAATCTTGGAGAAGGGTCTAAAGGTGCGGGAGTATGAGTTAAGAAAAAACAACTTCTCAGATACTGGAAACTTTGGTTTTGGGATCCAGGAACACATCGATCTGGGTATCAAATATGACCCAAGCATTGGTATCTACGGCCTGGACTTCTATGT|GCTATTGAAATATTTGAAGAAACTCTCCACCCTGCCTATTACAGTAGACATTCTTGCGGAGACTGGGGTTGGGAAAACAGTAAATAGCTTGCGAAAACACGAGCATGTTGGAAGCTTTGCCAGGGACCTAGTGGCCCAGTGGAAGAAGCTGGTTCCTGTGGAACGAAATGCTGAGCCTGATGAACAGGACTTTGAGAAGAGCAATTCCCGAAAGCGCCCTCGGGATGCCCTGCAGAAGGAGGAGGAGATGGAGGGGGACTACCAAGAAACCTGGAAAGCCACGGGGAGCCGATCCTATAGCCCTGACCAC 415 0.000161192889670667 0.7745443348332142 0.545394497534856 N Y 3.8097595335968 3.3551310813528503 3.3551310813528503 0 0.9956412744622348 0.0 Y 0.32439754164645 N Y 106433 17299 ENSG00000142676 ENSG00000011007 + - 1 1 24022915 24088549 coding coding RPL11 TCEB3 24018269 24069645 + + 0.0 24021281 24075511 + - N - - N SA470 4 0.0 1.8666666666666696 1 9 6 Y N 0.0 0.0 15 1.36686240247589 1.36038438161107 1.36686240247589 1.36038438161107 4 - - 0.932370145191328 HCT116-unstranded CGHSA0320 10.0 374882 ATCCTTTGGCATCCGGAGAAATGAAAAGATTGCTGTCCACTGCACAGTTCGAGGGGCCAAGGCAGAAGAAATCTTGGAGAAGGGTCTAAAGGTGCGGGAGTATGAGTTAAGAAAAAACAACTTCTCAGATACTGGAAACTTTGGTTTTGGGATCCAGGAACACATCGATCTGGGTATCAAATATGACCCAAGCATTGGTATCTACGGCCTGGACTTCTATGT|GCTATTGAAATATTTGAAGAAACTCTCCACCCTGCCTATTACAGTAGACATTCTTGCGGAGACTGGGGTTGGGAAAACAGTAAATAGCTTGCGAAAACACGAGCATGTTGGAAGCTTTGCCAGGGACCTAGTGGCCCAGTGGAAGAAGCTGGTTCCTGTGGAACGAAATGCTGAGCCTGATGAACAGGACTTTGAGAAGAGCAATTCCCGAAAGC 415 0.56612283567444 0.7745443348332142 0.545394497534856 N Y 3.8097595335968 3.3551310813528503 3.3551310813528503 1 0.995359456302432 0.0 Y 0.84222151428268 N Y 106433 17299 ENSG00000142676 ENSG00000011007 + - 1 1 24022915 24088549 coding intron RPL11 TCEB3 24018269 24069645 + + 0.0 24021281 24075511 + - N - - N SA470 5 0.0 2.13483146067416 1 235 6 Y N 0.0 0.0 356 1.53529094496107 1.40573052766478 1.53529094496107 1.40573052766478 4 - - 0.940754366454269 HCT116-unstranded CGHSA0320 10.0 6458 AAAGACTCCTGTCATCCAGCTTGTGCTCTTCATCATCCAGGATATTGCAGTCCTCTTCAACATCATCATCATTTTCCTCATGTTCTTCAACACCTTCGTCTTCCAGGCTGGCCTGGTCAACCTCCTATTCCATAAGTTCAAAGGGACCATCATCCTGACAGCTGTGTACTTTGCCCTCAGCATCTCCCTTCATGTCTGGGTCAT|GGTGTCCTGCTACCATATCCAACAGCTAACCTAGTACTGGATGTGGTGATGCTCCTCCTTTATCTTGGAATTGAAGTAATTCGCCTGTTTTTTGGTACAAAGGGAAACCTCTGCCAGCGAAAGATGCCGCTCAGTATTAGCGTGGCCTTGACCTTCCCATCTGC 16 1.0 0.8074062542711509 0.6705603909755 Y Y 3.23999710710482 3.60632674564779 3.23999710710482 0 0.0 0.0 Y 0.0 N Y 2568 1185 ENSG00000149483 ENSG00000187049 + - 11 11 61136683 61166335 coding coding TMEM138 TMEM216 61129473 61159159 + + 0.0 61133688 61161356 + - N - - N SA470 1 0.0 1.0 1 0 4 N Y 0.0 0.0 7 0.8356646915610891 0.8874888584796059 0.8874888584796059 0.8356646915610891 4 - - 0.994848257334812 HCT116-unstranded 10.0 6456 TATGACCTCTTTGTCAATTCCTTCTCAGAACTGCTCCAAAAGACTCCTGTCATCCAGCTTGTGCTCTTCATCATCCAGGATATTGCAGTCCTCTTCAACATCATCATCATTTTCCTCATGTTCTTCAACACCTTCGTCTTCCAGGCTGGCCTGGTCAACCTCCTATTCCATAAGTTCAAAGGGACCATCATCCTGACAGCTGTGTACTTTGCCCTCAGCATCTCCCTTCATGTCTGGGTCAT|GGTGTCCTGCTACCATATCCAACAGCTAACCTAGTACTGGATGTGGTGATGCTCCTCCTTTATCTTGGAATTGAAGTAATTCGCCTGTTTTTT 13 0.00227495213934691 0.38676971796287 0.825247139072548 Y Y 3.23999710710482 3.60632674564779 3.23999710710482 0 0.0 0.0 Y 0.0 N Y 2568 1185 ENSG00000149483 ENSG00000187049 + - 11 11 61136683 61166335 coding coding TMEM138 TMEM216 61129473 61159159 + + 0.0 61133688 61161356 + - N - - N SA470 1 0.0 1.0 1 0 4 N Y 0.0 0.0 18 1.46403271544811 1.26969208950367 1.46403271544811 1.26969208950367 4 - - 0.97605600674529 HCT116-unstranded 10.0 6596 GTCAATTCCTTCTCAGAACTGCTCCAAAAGACTCCTGTCATCCAGCTTGTGCTCTTCATCATCCAGGATATTGCAGTCCTCTTCAACATCATCATCATTTTCCTCATGTTCTTCAACACCTTCGTCTTCCAGGCTGGCCTGGTCAACCTCCTATTCCATAAGTTCAAAGGGACCATCATCCTGACAGCTGTGTACTTTGCCCTCAGCATCTCCCTTCATGTCTGGGTCAT|GTATGGACAGGATTTGAAGTACAGAATTTCAGCCAGCAGCCCATCAGGCTGACACCACACATATTGCTTCTGGTACTTTAGCCACACCAGTGAGAATTGGTGGGGCAAGTTGTCCTGAGAAAGGCTGTGTGGCTTTTCTTCAGCACAGACATTTGGGCAAGCAACTCAGCATAAGGCCAGTGGGTACCATCTTCTAAACCAGGACCATCAGCC 18 0.7051007785518649 0.8747496003352571 0.216421193660531 Y Y 3.23999710710482 3.5110433747387795 3.23999710710482 7 0.0 0.0116207757052827 Y 0.0 N Y 2568 1185 ENSG00000149483 ENSG00000187049 + - 11 11 61136683 61166335 coding intron TMEM138 TMEM216 61129473 61159159 + + 0.0 61133688 61165733 + - N - 0.229220510983519 N SA470 1 0.0 1.0 1 0 4 N Y 0.0 0.0 12 1.48346677804255 1.34742833988145 1.48346677804255 1.34742833988145 3 - 32.5833333333333 0.932825987769987 HCT116-unstranded 10.0 6466 TGCTAATCTATAAAATCAGCTATGCCACTGGCATTGTTGGCTACATGGCTGTCATGTTTACCCTCTTTGGTCTTAACTTATTATTCAAGATCAAACCAGAAGATGCCATGGACTTTGGCATCTCCCTTCTCTTCTATGGCCTCTACTATGGAGTTCTGGAACGGGACTTTGCAGAAATGTGTGCAGACTACATGGCATCTACCATAGGG|AGAAGAGGACGTTGTCACAGATAAAGAGCCAGGCTCACCAGCTCCTGACGCATGCATCATGACCATGAGACACAACTGGACACCAGACCTCAGCCCTTTGTGGGTCCTGCTCCTGTGTGCCCACGTCGTCACTCTCCTGGTCAGAGCCACACCTGTCTCGCAGACCACCACAGCTGCCACTGCCTCAGTTAGAAGCACAAAGGACCCCTGCCCCT 20 0.761915456218432 0.451524685600571 0.6456900831415191 Y Y 3.52105259334297 3.62101619003398 3.52105259334297 0 0.0 0.0 Y 0.0 N Y 1221 1893 ENSG00000137522 ENSG00000137496 + - 11 11 71708643 71716761 coding utr5p RNF121 IL18BP 71639747 71709587 + + 0.0 71701763 71710973 + - N - - N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 11 1.12717563047775 1.25025802690923 1.25025802690923 1.12717563047775 4 - - 0.985231059099993 HCT116-unstranded 10.0 1101868 ATAGTCTGGCCCAGGCGGGTGGAGAGGTTGGCAGGTAGGGTGGGCTCAGGGTTGGCTGGCGTGGGGCTTGGCGGGGTGCCCCGAGGGCTGGGGTAGGCCTTGCTGAGCCGGGACTCGGATGTCCACTCGATGTACACTTTGAGGCCCAGGAGTGTGAGCAGTGCTGACAGGCAGAGAAGGCACTTGGGGCAGCGCATGACCCGGCCCAGGGAAGGGGCGGCCGCGGGAG|GCTCTCTCCTGTGATTGGCCAGCACCACTCCCCCACCCTGACGTTGAGTGAAGACAAATGGAAGCCAGAAGTGTGGTGAGCTACCAGACATTCCATGCAGCCCGCTGAGAAGCCACGTGAGTGGGGACAGGGCTAAAGGCTAGGCAGGGACAGGGCTGGCTGTGTCCCGAGGCTGCTCCTCCGGCCCTGACTTCAGGCCCTCAGCCCAGTCGACTCCCACAACCTCGCAATT 14 0.6335722308098879 0.612893337761703 0.6683523859793891 Y Y 2.94384160132655 3.22423474015539 2.94384160132655 1 0.0 0.0 Y 0.0 N N 667 10318 ENSG00000177191 ENSG00000105341 - + 19 19 41934635 41946622 intron utr3p B3GNT8 ATP5SL 41931265 41937223 - - 0.0 41932715 41937997 + - N - 2.02085392637165 N SA470 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 14 1.39277448593515 1.41868656939441 1.41868656939441 1.39277448593515 4 - 123.785714285714 0.926003094117625 HCT116-unstranded 10.0 1099764 GTTGGGACTGCATCAGCTCTCTGAAGACCTCCCAAGACATGGGGTAAGACTAAGGGGCTCCCACTAAGCCTGGGCTGACCCCTTCACTCCACCCTGGTTTGGGGCAGGCCTGTCCCCATCATGGCAGGAACACAGTCTGTCAGCAGCAGCAGTTGATGATCTGTCCAGCCCTGATTTCCTCCCCCAAAGTTTGAATAATGGAGCCTGTGGGAACAG|GCTCTCTCCTGTGATTGGCCAGCACCACTCCCCCACCCTGACGTTGAGTGAAGACAAATGGAAGCCAGAAGTGTGGTGAGCTACCAGACATTCCATGCAGCCCGCTGAGAAGCCACGTGAGTGGGGACAGGGCTAAAGGCTAGGCAGGGACAGGGCTGGCTGTGTCCCGAGGCTGCTCCTCCGGCCCTGACTTC 75 1.0 0.514591443121155 0.290498409332513 Y Y 3.44086924197409 3.22423474015539 3.22423474015539 0 0.0 0.0 Y 0.0 N N 667 10318 ENSG00000177191 ENSG00000105341 - + 19 19 41934635 41946622 utr5p utr3p B3GNT8 ATP5SL 41931265 41937223 - - 0.0 41934624 41937997 + - N 54.7037037037037 2.02085392637165 N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 62 1.41220854852959 1.24378000604441 1.41220854852959 1.24378000604441 4 0 27.9516129032258 0.974281752269776 HCT116-unstranded 10.0 294283 GGGGGTTCCGGGAAGATGGTGCTGATCAAGGAATTCCGTGTGGTTTTGCCATGTTCTGTTCAGGAGTATCAGGTTGGGCAGCTTTACTCTGTTGCAGAAGCTAGTAAGAATGAGACTGGTGGTGGAGAAGGAATTGAAGTCTTAAAGAATGAACCTTATGAGAAGGATGGAGAAAAGGGACAGTATACGCACAAAATTTATCACCTAAAGA|GCCCACGACCTCCCTGCAAACAAGGCCTCAGCATCCCAGCCTGGCAGCCACTTGCAGTGCCTGTCTGTCCACTGCACAGACGACGTGGGTGACGCCAAGGCTCGAGCCTCCGTGCCCACCTGGCGGTCCCTGCATTCTGACATCTCCAACAGATTTGGGACATTCGTGGCTGCCCTAACTTGAATGACAAGAAAGATCCCCTCCTCTACCAGGCCCTTCCTCTCCCCCTGTCTGTT 70 1.0 0.967269678550897 0.665476912553907 Y Y 3.3289582682151098 3.21129414611088 3.21129414611088 0 0.0 0.00696090047393361 Y 0.00696090047393361 N Y 1453 10825 ENSG00000180957 ENSG00000169184 + - 22 22 28316122 28197486 coding intron PITPNB MN1 28202413 28144265 - - 0.0 28306952 28147084 - + N - 1.6617781803868 N SA470 1 0.163179916317992 1.0 1 0 3 N Y 0.0 0.163179916317992 55 1.39277448593515 1.5482469866907 1.5482469866907 1.39277448593515 4 - 10.2727272727273 0.994848257334812 HCT116-unstranded 10.0 294867 GGAACATTAGAAAATGTACATGGTTTAGATCCAAACACATGGAAAACTGTTGAAATTGTCCATATAGATATTGCAGATAGAAGTCAAGTTGAACCAGCAGACTACAAAGCTGATGAAGACCCAGCATTATTCCAGTCAGTCAAGACCAAGAGAGGCCCTTTGGGACCCAACTGGAAG|CCCACGACCTCCCTGCAAACAAGGCCTCAGCATCCCAGCCTGGCAGCCACTTGCAGTGCCTGTCTGTCCACTGCACAGACGACGTGGGTGACGCCAAGGCTCGAGCCTCCGTGCCCACCTGGCGGTCCCTGCATTCTGACATCTCCAACAGATTTGGGACATTCGTGGCTGCCCTAACTTGAATGACAAGAAAGATCCCCTCCTCTACCAGGCCCTTCCTCTCCCCCTGTCT 11 0.4817130887535829 0.326551341581397 0.339422512621996 Y Y 3.2525669787887503 3.2038455805864303 3.2038455805864303 0 0.0 0.0 Y 0.0 N Y 1453 10825 ENSG00000180957 ENSG00000169184 + - 22 22 28316122 28197486 coding coding PITPNB MN1 28202413 28144265 - - 0.0 28269726 28147084 - + N - 1.66035218800645 N SA470 1 0.19047619047619 1.0 1 0 3 N Y 0.0 0.19047619047619 6 1.0235272966407098 1.22434594344997 1.22434594344997 1.0235272966407098 4 - 94 0.978794807815745 HCT116-unstranded 10.0 294866 TTGAAGTCTTAAAGAATGAACCTTATGAGAAGGATGGAGAAAAGGGACAGTATACGCACAAAATTTATCACCTAAAGA|GCCCACGACCTCCCTGCAAACAAGGCCTCAGCATCCCAGCCTGGCAGCCACTTGCAGTGCCTGTCTGTCCACTGCACAGACGACGTGGGTGACGCCAAGGCTCGAGCCTCCGTGCCCACCTGGCGGTCCCTGCATTCTGACATCTCCAACAGATTTGGGACATTCGTGGCTGCCCTAACTTGAATGACAAGAAAGATCCCC 70 0.00212130344094635 0.967269678550897 0.665476912553907 Y Y 3.3289582682151098 3.21129414611088 3.21129414611088 0 0.0 0.0163461538461538 Y 0.0163461538461538 N Y 1453 10825 ENSG00000180957 ENSG00000169184 + - 22 22 28316122 28197486 coding intron PITPNB MN1 28202413 28144265 - - 0.0 28306952 28147084 - + N - 1.6617781803868 N SA470 1 0.0211640211640212 1.0 1 0 3 N Y 0.0 0.0211640211640212 6 0.952269067127752 1.14013167220738 1.14013167220738 0.952269067127752 4 - 94.1666666666667 0.991240892989256 HCT116-unstranded 10.0 1136884 CATCACCTGACTCGGCCCCATCCTGAAAGAGTACCATTCTTGGTTGCTGAAACACCAAGGGCACGCCATACCCTTGATGAATTAAATCCACAGAAATCCAAACACCAAGGTGTAAGGAAAGCAAAATGGCATTTAGGAATTAGAAGTCAAAGTCGACCAAATGATATTATGGCAGAAGTATGTAGAGCAATCAAACAATTGGATTATGAATGGAAG|AATGGCTTCCTTTGGGTGGAAGAGGAAAATTGGTGAGAAGGTCTCAAAGGTCACTTCCCAGCAGTTTGAAGCTGAAGCTGCTGATGAGAAGGATGTAGTTGACAACGATGAAGGGAACTGGCTTCATGCCATTAAACGTAGGAAAGAAATTCTTCTTGAAGGCTGTGCTGAGAAAAGTAAACAGCT 12 1.0 0.372925608775094 0.540887614654492 Y Y 3.44143830342756 3.20720590972129 3.20720590972129 0 0.994636996718162 0.0 Y 0.0 N Y 1444 544 ENSG00000132356 ENSG00000113638 + - 5 5 40798476 40756077 coding utr5p PRKAA1 TTC33 40759481 40714577 - - 0.0 40764854 40747121 - + N - - N SA470 1 0.0 1.0 1 0 2 N Y 0.0 0.0 11 1.27617011036848 1.08182948442405 1.27617011036848 1.08182948442405 4 - - 0.9896535648606628 HCT116-unstranded 10.0 1136883 AGAGCAATCAAACAATTGGATTATGAATGGAAGGTTGTAAACCCATATTATTTGCGTGTACGAAGGAAGAATCCTGTGACAAGCACTTACTCCAAAATGAGTCTACAGTTATACCAAGTGGATAGTAGAACTTATCTACTGGATTTCCGTAGTATTGATG|AATGGCTTCCTTTGGGTGGAAGAGGAAAATTGGTGAGAAGGTCTCAAAGGTCACTTCCCAGCAGTTTGAAGCTGAAGCTGCTGATGAGAAGGATGTAGTTGACAACGATGAAGGGAACTGGCTTCATGCCATTAAACGTAGGAAAGAAATTCTTCTTGAAGGCTGTGCTGAGAAAAGTAAACAGCTGAAGGATGAAGGAGCCAGTTTGGCTG 11 0.940200931792985 0.962080123973922 0.34618409870660105 Y Y 3.53721618787652 3.20720590972129 3.20720590972129 0 0.993766756032172 0.0 Y 0.0 N Y 1444 544 ENSG00000132356 ENSG00000113638 + - 5 5 40798476 40756077 coding utr5p PRKAA1 TTC33 40759481 40714577 - - 0.0 40764616 40747121 - + N - - N SA470 1 0.0 1.0 1 0 2 N Y 0.0 0.0 11 1.03648333837034 1.2373019851796 1.2373019851796 1.03648333837034 4 - - 0.993718818353945 HCT116-unstranded 10.0 796166 GGAGGAGGAGGAGGAGGAGGAGGAAGATGCTGCAGTAGGGGAACAGGAGGGAGCACGTGAGAGAGAGGAGTTGCCAAAAGAAATACCTAAGCAGGACCACATTCACAGAGTGACCGCCTTGGTGAATGGGAACATAGAACAGATGGGAAATGGATTCCAGGATCTTCAA|GAGGAACCGCTGCTGCTGGCCGAACTCAAGCCCGGGCGCCCCCACCAGTTTGATTGGAAGTCCAGCTGTGAAACCTGGAGCGTCGCCTTCTCCCCAGATGGCTCCTGGTTTGCTTGGTCTCAAGGACACTGCATCGTCAAACTGATCCCCTGGCCGTTGGAGGAGCAGTTCATCCCTAAAGGGTTTGAAGCCAAAAGCCGAAG 25 1.0 0.8262946080174209 0.7626692129035891 Y Y 3.38912318237562 3.30484224704734 3.30484224704734 2 0.0 0.0 Y 0.0 N Y 2675 8547 ENSG00000176834 ENSG00000176871 + - 12 12 118573831 118500235 coding utr5p VSIG10 WSB2 118501398 118470712 - - 0.0 118506182 118490283 - + N - - N SA470 1 0.155172413793103 1.0 1 0 1 Y Y 0.155172413793103 0.0 13 1.12717563047775 1.2373019851796 1.2373019851796 1.12717563047775 4 - - 0.993361809521777 HCT116-unstranded 10.0 159433 GACCTCCTCCATATTTCCTCCAAATAAGAAGCTGCTGACCCTGCCCTTTGCTTTCTTTCTGGCCTCTGCCGTAGCCTGCCCACCTCCCCTGGGGACAAATGTCGAATGGCTCCAGAGCATGTCACTGCACAGAAGATGAAGAAAGCCTATTATCTGACCCAGAAAATTCCTGATCAGGT|GCTTTACAAGGCCAAGTACGGTCCAATGTGGATGTCCTACTTAGGGCCTCAGATGCACGTGAACCTGGCCAGTGCCCCGCTCTTGGAGCAAGTGATGCGGCAAGAGGGCAAGTACCCAGTACGGAACGACATGGAGCTATGGAAGGAGCACCGGGACCAGCACGACCTGACCTATG 13 0.474834192908331 0.96712320192757 0.6345152698266179 Y Y 3.57063922744582 3.83489927696465 3.57063922744582 7 0.0 0.0 Y 0.00847484678243093 N Y 3136 397 ENSG00000135912 ENSG00000135929 + - 2 2 219620139 219680016 intron coding TTLL4 CYP27A1 219575568 219646472 + + 0.0 219616529 219674300 + - N 3.64914684265282 0.401437032569518 N SA470 1 0.0 1.0 1 0 3 Y Y 0.0 0.0 11 1.16604375566664 1.17252177653145 1.17252177653145 1.16604375566664 4 4.36363636363636 0.272727272727273 0.9868217655174928 HCT116-unstranded 10.0 163829 CTTTGGTTTTGACATCATGCTAGACGAAAACCTCAAGCCCTGGGTCCTGGAAGTCAACATTTCCCCAAGCCTCCACTCCAGCTCTCCACTGGATATCAGCATCAAAGGCCAGATGATTCGTGACCTTCTGAATCTGGCAGGTTTTGTCCTGCCCAATGCAGAGGATATCATTTCCAGCCCCAGCAGCTGCAGCAGCTCCACCACCAG|GTGCTTTACAAGGCCAAGTACGGTCCAATGTGGATGTCCTACTTAGGGCCTCAGATGCACGTGAACCTGGCCAGTGCCCCGCTCTTGGAGCAAGTGATGCGGCAAGAGGGCAAGTACCCAGTACGGAACGACATGGAGCTATGGAAGGAGCACCGGGACCAGCACGACCTGACCTATGGGCCGTT 15 0.908651156765767 0.713483754602015 0.608678119666222 Y Y 2.8652908864045696 3.80041266240192 2.8652908864045696 0 0.0 0.0 Y 0.0 N Y 3136 397 ENSG00000135912 ENSG00000135929 + - 2 2 219620139 219680016 coding coding TTLL4 CYP27A1 219575568 219646472 + + 0.0 219614869 219674300 + - N - - N SA470 1 0.0 1.0 1 0 3 Y Y 0.0 0.0 21 1.30856021469256 1.17899979739626 1.30856021469256 1.17899979739626 4 - - 0.980554975803131 HCT116-unstranded 10.0 294742 CCTGAAAGGACAGATTATGAAATGGACAGGCAATTCCTCATAGAAATAATGGAAATCAATGAAAAACTCGCAGAAGCTGAAAGTGAAGCTGCCATGAAAGAGATTGAATCCATTGTCAAAGCTAAACAGAAAGAATTTACTGACAATGTGAGCAGTGCTTTTGAACAAG|TAAATCTTGCTGCTGCCCACTCTGGGTTTGCACTGCCTTTATGAGCCATAACACCCACCGCGAGGATCTGCTGCTTCATTCCTGAAGTCAGCAAGATCACAAACGCACCTGGCAGAACAAACAACTCCTGACAGGCCACCTTTAAGAGCTGTAACACTCACTGTGAAGGTCTGCAGGTTCTC 10 0.972348170136032 0.353836345712884 0.571100801127319 Y Y 3.30232144676095 3.08148430784579 3.08148430784579 0 0.0 0.0 Y 0.0 N N 222 404 ENSG00000100209 ENSG00000159873 + - 22 22 29153503 29185283 coding upstream HSCB CCDC117 29138019 29168662 + + 0.0 29147276 29165397 + - N - - N SA470 1 1.0 1.0 1 0 1 N Y 0.0 1.0 5 0.738494378588869 1.0170492757759 1.0170492757759 0.738494378588869 4 - - 0.968636045484053 HCT116-unstranded 10.0 1101869 ACGGCCAGGCCTTCTCGAAGCCCATCCTGGACCTGGGGGCTGAGGCACTCATCATGCAGGCCCGATCTGCCCACCGTGACTGTGAGGACGTGGCCAAGGCCGCCCTGCGGGACCTGGGTTGTCATGTCGAGCTCCGAGAGCTGTGGACAGGCCAGAGGGGCAACCTGGCGCCATGACCCCAGGCCCAGTCTGGGCCGTGACTCTG|GGACCGAGTCTCCTGCCATTCCGAGCAGGCCTGGTATGGGTAATGGTGTGAAGGAAGGCCCGGTGCGATTGCATGAGGATGCTGAGGCTGTCCTGTCCTCGTCCGTCTCATCAAAGCGTGACCACAGGCAAGTGCTCAGCTCCCTGCTGTCTGGGGCCCTGGCTGGTGCCCTTGCCAAAACAGCGGTAGCTCCCCTGGA 17 0.9896497775938128 0.363196329150975 0.34938416591297605 Y Y 3.4048855493250496 3.71041843152174 3.4048855493250496 1 0.0 0.0 Y 0.0024691358024691 N Y 6548 807 ENSG00000105676 ENSG00000181035 + - 19 19 19170563 19223704 utr3p utr5p ARMC6 SLC25A42 19144384 19174803 + + 0.0 19168467 19206900 + - N - - N SA470 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 27 1.34742833988145 1.28912615209811 1.34742833988145 1.28912615209811 4 - - 0.98660755015233 HCT116-unstranded 10.0 1102283 CATCATGCAGGCCCGATCTGCCCACCGTGACTGTGAGGACGTGGCCAAGGCCGCCCTGCGGGACCTGGGTTGTCATGTCGAGCTCCGAGAGCTGTGGACAGGCCAGAGGGGCAACCTGGCGCCATGACCCCAGGCCCAGTCTGGGCCGTGACTCTG|GGACCGAGTCTCCTGCCATTCCGAGCAGGCCTGGTATGGGTAATGGTGTGAAGGAAGGCCCGGTGCGATTGCATGAGGATGCTGAGGCTGTCCTGTCCTCGTCCGTCTCATCAAAGGCAAGTACCCCGGCCTCCTGGGATGGGTGTTCTCCTGGGGCCCCAGCCTCCCCACCCCCCCTCCCAGGCTCCCTGCCT 12 0.7639820913053109 0.33140958553843297 0.372547742899585 Y Y 3.4048855493250496 3.71041843152174 3.4048855493250496 0 0.0 0.0 Y 0.0 N Y 6548 807 ENSG00000105676 ENSG00000181035 + - 19 19 19170563 19223704 utr3p intron ARMC6 SLC25A42 19144384 19174803 + + 0.0 19168467 19206900 + - N - 0.134987275393815 N SA470 1 0.0 1.0 1 0 2 N Y 0.0 0.0 6 0.44698343967221 0.550631773509245 0.550631773509245 0.44698343967221 4 - 1.66666666666667 0.98459800041331 HCT116-unstranded 10.0 216538 GAGGGCAGTGGATCCGCAAATTGGAAACTAAAGACTTAGGCACTTCCGGGTCCTGCTGGGTGTGTCCTCGGAATACCAGGGGGATCTTGGGCACTGAAAATGGGACCTTGTCTTTGGGGGAGTCCCCGAGCTCCTTTCTCAGCTGCTGCAGGTCCCACAGCCTCATCTTGAGTCTGGCCTGCTCCTCCTGAAGGGCGTGGAGGG|CCTCTCTTCAAACTTGACCTTGGCCTCCCGTCGGGCCTTGCGTTTAAGAGCAGGATCTCTGAAGACATCCTTATTGACGACAGTTTTGTCCAAGGGGATATCCACAGAGTACCTGGGGACAAAGGTGGAGAG 515 0.915875119177337 0.903951471952099 0.6645770707381489 Y Y 3.369767092576549 3.2474058198359104 3.2474058198359104 0 0.0 0.0 Y 0.0029673590504451 N Y 3091 61036 ENSG00000068079 ENSG00000131469 - + 17 17 41166473 41154976 coding intron IFI35 RPL27 41158742 41150290 + + 0.0 41164196 41154800 - + N - 0.585281679012014 N SA470 1 0.0 1.0 1 0 5 Y Y 0.0 0.0 21 1.2632140686388602 0.654280107346279 1.2632140686388602 0.654280107346279 4 - 553.904761904762 0.994848257334812 HCT116-unstranded 10.0 219587 AATTGACCGCTACCCCCGCAAAGTGACAGCTGCCATGGGCAAGAAGAAGATCGCCAAGAGATCAAAGATAAAATCTTTTGTGAAAGTGTATAACTACAATCACCTAATGCCCACAAGGTACTCTGTGGATATCCCCTTGGACAAAACTGTCGTCAATAAGGATGTCTTCAGAGATCCTGCTCTTAAACGCAAGGCCCGACGGGAGGCCAAGGTCAAGTTTGAAGAGAG|GCCCTCCACGCCCTTCAGGAGGAGCAGGCCAGACTCAAGATGAGGCTGTGGGACCTGCAGCAGCTGAGAAAGGAGCTCGGGGACTCCCCCAAAGACAAGGTAAGGTGGGAGATCTGGTGTTGTTTGGTAAAAACGAGCTGGCGAGGCCGGGTGCGGTGGCTCACACCTGTAAACCCAGCACTTTGGTAGGCCAAGGGGGCCTGATCACCTCAG 560 1.0 0.969533248883255 0.602201218232607 Y Y 3.2693225627147204 3.28655907981151 3.2693225627147204 0 0.0 0.0 Y 0.0 N Y 61036 3091 ENSG00000131469 ENSG00000068079 + - 17 17 41154976 41166473 coding coding RPL27 IFI35 41150290 41158742 + + 0.0 41154800 41164196 + - N - 0.27003607427954 N SA470 74 0.31506849315068497 2.7216494845360804 1 44 5 N Y 0.0 0.31506849315068497 97 1.51585688236663 1.36038438161107 1.51585688236663 1.36038438161107 4 - 2.16494845360825 0.9518322024903232 HCT116-unstranded 10.0 221471 CGCCAAGAGATCAAAGATAAAATCTTTTGTGAAAGTGTATAACTACAATCACCTAATGCCCACAAGGTACTCTGTGGATATCCCCTTGGACAAAACTGTCGTCAATAAGGATGTCTTCAGAGATCCTGCTCTTAAACGCAAGGCCCGACGGGAGGCCAAGGTCAAGTTTGAAGAGAG|GCCCTCCACGCCCTTCAGGAGGAGCAGGCCAGACTCAAGATGAGGCTGTGGGACCTGCAGCAGCTGAGAAAGGAGCTCGGGGACTCCCCCAAAGACAAGTAAATGTATTTATCTCCGGCACTCAGCATCAATGGAATGGAATCGGAGATGCCTTCCTCCTAGGTGGGAGTGAGGAACACTCCTACTCCCCTCCCCTACTTCCAAAA 490 0.967584139835312 0.939705931295838 0.5990596982541179 Y Y 3.2693225627147204 3.28655907981151 3.2693225627147204 0 0.0 0.0 Y 0.0 N Y 61036 3091 ENSG00000131469 ENSG00000068079 + - 17 17 41154976 41166473 coding coding RPL27 IFI35 41150290 41158742 + + 0.0 41154800 41164196 + - N - - N SA470 5 0.0 1.3695652173913 1 13 5 N Y 0.0 0.0 46 1.15308771393701 0.945791046262938 1.15308771393701 0.945791046262938 4 - - 0.974750530757158 HCT116-unstranded 10.0 220894 GCTCTGGTGGCTGGAATTGACCGCTACCCCCGCAAAGTGACAGCTGCCATGGGCAAGAAGAAGATCGCCAAGAGATCAAAGATAAAATCTTTTGTGAAAGTGTATAACTACAATCACCTAATGCCCACAAGGTACTCTGTGGATATCCCCTTGGACAAAACTGTCGTCAATAAGGATGTCTTCAGAGATCCTGCTCTTAAACGCAAGGCCCGACGGGAGGCCAAGGTCAAGTTTGAAGAGAG|GCCCTCCACGCCCTTCAGGAGGAGCAGGCCAGACTCAAGATGAGGCTGTGGGACCTGCAGCAGCTGAGAAAGGAGCTCGGGGACTCCCCCAAAGACAAGGTCCCATTTTCAGTGCCCAAGATCCCCCTGGTATTCCGAGGACACACCCAGCAGGACCCGGAAGTGCCTAAGTCTTTAGTTTCCAATTTGCGGATCCACTGCCCTCTGCTTGCGGGCTCTGCTCTGAT 569 1.0 0.972168934593879 0.5991992667558511 Y Y 3.2693225627147204 3.28655907981151 3.2693225627147204 0 0.0 0.0 Y 0.0 N Y 61036 3091 ENSG00000131469 ENSG00000068079 + - 17 17 41154976 41166473 coding coding RPL27 IFI35 41150290 41158742 + + 0.0 41154800 41164196 + - N - - N SA470 6 0.0 1.80864197530864 1 239 5 N Y 0.0 0.0 486 1.57415907014996 1.49642281977218 1.57415907014996 1.49642281977218 4 - - 0.966029946167572 HCT116-unstranded 10.0 1133716 CAGTCTGGCCAAGGAAATGAAATTGGGAGTTGCTGTGTGGAAACTCAACTCTCTGGAACTTCTTCCTTCCTCCTGCCTCTGCACAAATGTGACGGCAGCAGCTGAAGCCAACATCTTGCGACCATGAGAGAAAAACCTGGAGAACGGACGAGTCCTCAACCCTGACTTCAGACCAACCTACACCCACCTCTGGACGTGGGGCTAA|TAGAGACGTCATCTAAGAGGAGCTTGCAAGTCCAGAGGGCTTCCTGAAGGAAGTGAGCTGAGAATAATATGAAATTAACCAGACCAAGGGCCATTCCAGGAAGAGAGAATGGTACGTGAAACTGCCCAGGAG 8 1.0 0.769821648196428 0.8528703862230659 Y Y 3.53039946453785 3.61464054707277 3.53039946453785 0 0.0 0.00295857988165671 Y 0.0407253003406849 N N 772 13628 ENSG00000113761 ENSG00000160867 + - 5 5 176508190 176525145 utr3p upstream ZNF346 FGFR4 176449697 176513887 + + 0.0 176506605 176513157 + - N - - N SA470 1 1.0 1.0 1 0 1 N Y 0.276315789473684 1.0 16 0.984659171451826 0.7579284411833129 0.984659171451826 0.7579284411833129 4 - - 0.989858881574724 HCT116-unstranded 10.0 161531 AGAAGCACCCGCACCTGGAGAGTCAGGAGGGCCTCACATCAGAACGCCTGAGCAAATACAGTTTTGAAGGATACTAATTTTTTAAAAAGTTCATTCACATGAGTTAGACAAAGAGAAAGAAGCAGGACATTCTAGGAAGAAGGAACGGCCCAGGCAAAAGCGACGCGTACATTGGCGTG|TGTGGTCCCTGGACCAGTATCATCAGCATTGCCTGTGAGCTAATTAGAAATGCAACATATTGGAGCTGCTGTGGACTGAATGTGTGTGTCCCCCCAAAGTGCACATGTTAAATCCTAACCCCCAAAGTGATGGTCTTTGGGTGGTGATGAGGTCGTGAGAGTGGAGTCCCACGATGGCATGAGTGCCCTTATGAAGGAGGCCCCTGGAGAGCTCCCTCAGCCCTTCTGCAAGGACACAGTGAGAAGAGGCTGTGAACAAGGA 5 0.7853645005499549 0.4897142739591479 0.5610615980426871 Y Y 3.48912663185998 3.57848902055439 3.48912663185998 0 0.0 0.0 Y 0.0 N N 367 99031 ENSG00000234171 ENSG00000171863 + - 2 2 3609324 3628509 intron upstream AC108488.3 RPS7 3606082 3622795 + + 0.0 3607319 3617864 + - N - - N SA470 1 0.7967479674796751 1.0 1 0 1 N Y 0.0163934426229508 0.7967479674796751 10 1.18547781826108 1.43164261112404 1.43164261112404 1.18547781826108 4 - - 0.981077373684279 HCT116-unstranded 10.0 860592 TACAGCCAAACCTGAGCTCTTCGCTTATCCCCTGGATTGGTCTATTGTGGATTCTATACTGATGGAACGTCGAATTAGACCATGGATTAATAAGAAAATCATAGAATATATAGGTGAAGAAGAAGCTACATTAGTTGATTTTGTTTGTTCTAAGGTTATGGCTCATAGTTCACCCCAGAGCATTTTAGATGATGTTGCCATGAA|TGACAATAGAGAACGGCAGGAGCACAACGACAGACGGAGCCTTGGCCACCCTGAGCCATTATCTAATGGACGACCCCAGGGTAACTCCCGGCAGGTGGTGGAGCAAGATGAGGAAGAAGATGAGGAGCTGACATTGAAATATGGCGCCAAGCATGTGATCATGCTCTTTGTCCCTGTGACTCTCTGCATGGTGGTGGTCGTGGCTACCAT 89 0.760603119795523 0.8147023633473108 0.388464909864242 Y Y 3.41526549028982 3.20078106639692 3.20078106639692 1 0.0 0.0 Y 0.00240963855421683 N Y 18869 8450 ENSG00000119707 ENSG00000080815 + - 14 14 73588122 73690399 intron coding RBM25 PSEN1 73525144 73603126 + + 0.0 73581041 73637505 + - N - - N SA470 1 0.0 1.0 1 0 4 Y Y 0.0 0.0 87 1.34095031901663 1.39277448593515 1.39277448593515 1.34095031901663 4 - - 0.993718818353945 HCT116-unstranded 10.0 860670 TAAGAGTCTCATTGAGAAAATCCCTACAGCCAAACCTGAGCTCTTCGCTTATCCCCTGGATTGGTCTATTGTGGATTCTATACTGATGGAACGTCGAATTAGACCATGGATTAATAAGAAAATCATAGAATATATAGGTGAAGAAGAAGCTACATTAGTTGATTTTGTTTGTTCTAAGGTTATGGCTCATAGTTCACCCCAGAGCATTTTAGATGATGTTGCCATG|ACCTAATCTGGGAGCCTGCAAGTGACAACAGCCTTTGCGGTCCTTAGACAGCTTGGCCTGGAGGAGAACACATGAAAGAAAGAACCTCAAGAGGCTTTGTTTTCTGTGAAACAGTATTTCTATACAGTTGCTCCAATGACAGAGTTACCTGCACCGTTGTCCTACTTCCAGAATGCACAGATGTCTGAGGACAACCACCTGAGCAATACTGTACGTAGCCAGAATGACAATAGAGAACGGCAGGAGCACAACGACAGACGGAGCCTTGGCCACCCTGAGCCATTATCTAATGGAC 88 3.8047669159039e-05 0.977821392843522 0.40788426618504703 Y Y 3.35463656781289 3.6868062714637406 3.35463656781289 0 0.0 0.0 Y 0.0 N Y 18869 8450 ENSG00000119707 ENSG00000080815 + - 14 14 73588122 73690399 coding utr5p RBM25 PSEN1 73525144 73603126 + + 0.0 73581041 73614503 + - N - - N SA470 1 0.0 1.0 1 0 4 Y Y 0.0 0.0 8 0.8810108376147909 0.8356646915610891 0.8810108376147909 0.8356646915610891 4 - - 0.989329078699684 HCT116-unstranded 10.0 860559 CATTAAGAGTCTCATTGAGAAAATCCCTACAGCCAAACCTGAGCTCTTCGCTTATCCCCTGGATTGGTCTATTGTGGATTCTATACTGATGGAACGTCGAATTAGACCATGGATTAATAAGAAAATCATAGAATATATAGGTGAAGAAGAAGCTACATTAGTTGATTTTGTTTGTTCTAAGGTTATGGCTCATAGTTCACCCCAGAGCATTTTAGATGATGTTGCCATG|ACCTAATCTGGGAGCCTGCAAGTGACAACAGCCTTTGCGGTCCTTAGACAGCTTGGCCTGGAGGAGAACACATGAAAGAAAGAACCTCAAGAGGCTTTGTTTTCTGTGAAACAGTATTTCTATACAGTTGCTCCAATGACAGAGTTACCTGCACCGTTGTCCTACTTCCAGAATGCACAGATGTCTGAGGACAACCACCTGAGCAATACTAA 87 0.9470384260539472 0.948542246839311 0.419288054453536 Y Y 3.35463656781289 3.6868062714637406 3.35463656781289 0 0.0 0.0 Y 0.0 N Y 18869 8450 ENSG00000119707 ENSG00000080815 + - 14 14 73588122 73690399 coding utr5p RBM25 PSEN1 73525144 73603126 + + 0.0 73581041 73614503 + - N - - N SA470 1 0.0 1.0 1 0 4 Y Y 0.0 0.0 60 1.49642281977218 1.39925250679996 1.49642281977218 1.39925250679996 4 - - 0.993718818353945 HCT116-unstranded 10.0 795262 TTGCGTCCACTGCTCTTCTGACAGCATCATTTACAGGTTCACACTGTTCCACCTGAGTCTTCATATTATGCTCAAAATATGGACCTATCAGAAAATAGTTCTCTCCCCATTCATCTGCTGTTGTTTTGGCCTTTGTCTGAATCACAGTATAGATGCCTCCAA|CTTAGCCTGAAATATAAGTTGATGTTTTTTCTCCAAGTTGTTGTCATCCGTTGACTTTGCTTGTGTTATGTTTTCAGGTAAGAAGTTCTCTTTTTCAGTGGTTAAATTGAACCAATCCTTTCTTTAATGGCTCTAGATATGGAGAA 9 0.787263383703405 0.428270570137325 0.233717316312284 Y Y 3.69937614314766 3.39065076568547 3.39065076568547 0 0.0 0.0168905439553133 Y 0.0168905439553133 N N 450 148736 ENSG00000111713 ENSG00000111716 - + 12 12 21757781 21910791 coding downstream GYS2 LDHB 21689123 21788276 - - 0.0 21733457 21783595 + - N 11.5590906940436 - N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 7 0.8745328167499771 0.8097526081018299 0.8745328167499771 0.8097526081018299 4 0 - 0.982633938335109 HCT116-unstranded 10.0 1036468 CTGCCAGTCACTTTCCACCGAGCCTTTGACATGGTTCATGATCCAATGGCAGCTCTGGAGACCCTCTTAACCTTGGGATTTGAACGCGTGTTGACCAGTGGATGTGACAGTTCAGCATTAGAAGGGCTACCCCTAATAAAGCGACTCATTGAGCA|GAATTCCTCATTCCTGGACAGTCCGGAGGCAGACCTGCCACTTTGTTTTGAGCAAACTGTTCTGGTGTGGATTCCCTTGGGCTACCTATGGCTCCTGGCCCCCTGGCAGCTTCTCCACGTGTATAAATCCAGGACCAAGAGATCCTCTACCACCAAACTCTATCTTGCTAAGCAGGTATTCGTTGGTTTTC 6 0.255742506794992 0.543202601847623 0.7807682687095849 Y Y 3.5832090991297503 3.75016368088976 3.5832090991297503 0 0.0 0.0 Y 0.0 N Y 1308 3478 ENSG00000119929 ENSG00000023839 + - 10 10 101515891 101611949 coding coding CUTC ABCC2 101462315 101542489 + + 0.0 101507147 101544365 + - N - - N SA470 1 0.0 1.0 1 0 3 Y Y 0.0 0.0 11 0.8874888584796059 1.27617011036848 1.27617011036848 0.8874888584796059 4 - - 0.988685438798455 HCT116-unstranded 10.0 1036469 CTCTGCCAGTCACTTTCCACCGAGCCTTTGACATGGTTCATGATCCAATGGCAGCTCTGGAGACCCTCTTAACCTTGGGATTTGAACGCGTGTTGACCAGTGGATGTGACAGTTCAGCATTAGAAGGGCTACCCCTAATAAAGCGACTCATTGAGCAG|AATTCCTCATTCCTGGACAGTCCGGAGGCAGACCTGCCACTTTGTTTTGAGCAAACTGTTCTGGTGTGGATTCCCTTGGGCTACCTATGGCTCCTGGCCCCCTGGCAGCTTCTCCACGTGTATAAATCCAGGACCAAGAGATCCTCTACCACCAAACTCTATCTTGCTAAGCAGGTATTCGTTGGTTTTCTTCTTATTCTAGCAGCCATAGAGCTGGCCCTTGTACTCACAGAAGACTCTGGACAAGCCACAGTCCCTGCTGTTCGATATACCAATCCAAGCCTCTACCTAGGCACATGGCTCCTGGTTTTGCTGATCCAATACAGCAGAC 4 4.870521962288221e-09 0.954145849731894 0.961214951357097 Y Y 3.56129235625094 3.762733552573681 3.56129235625094 0 0.0 0.0 Y 0.0 N Y 1308 3478 ENSG00000119929 ENSG00000023839 + - 10 10 101515891 101611949 coding coding CUTC ABCC2 101462315 101542489 + + 0.0 101507147 101544365 + - N - - N SA470 1 0.0 1.0 1 0 3 Y Y 0.0 0.0 11 1.0170492757759 1.03000531750553 1.03000531750553 1.0170492757759 4 - - 0.987994885374266 HCT116-unstranded 10.0 950981 GTCCGGTATGAGAACCTGATAGCGGGCGTGAGCGGCGGCGTCTTATCCAACCTTGCGCTGCATCCGCTCGACCTCGTGAAGATCCGCTTCGCCGTGAGTGATGGATTGGAACTGAGACCGAAATATAATGGAATTTTACATTGCTTGACTACCATTTGGAAACTTGATGGACTACGGGGACTTTATCAAGGAGTAACCCCAAATATATGGGGTGCAGGTTTATCCTGGGGACTCTACTTTTTCTT|GATCTTCTAAGGGTGTGAGGATACAGGCGTCAAAGACCCCGTGCTGAGACAGCTCCATAACAACATGCAGATATTTGGCAATGAGGGTTCAGAAGAGGACTTGCTGTGGAGAAGAGAGAAAAGAGATGGGAAGACTCTGTGAATGAATAGAGAACACTCTGCAAGCATCCCAGTTCCTTTGGTTGCCCTGCAGTCTGCAGGTACCAGGAGAAATCAAAAGC 4 0.888823126173312 0.8180876476961211 0.404901830763096 N Y 3.2876854355372407 3.6925594198089904 3.2876854355372407 0 0.995484802387435 0.0 Y 0.0 N Y 678 602 ENSG00000164933 ENSG00000247081 + - 8 8 104427417 104311000 coding intron SLC25A32 RP11-318M2.2 104410863 104169218 - - 0.0 104419862 104258912 - + N - 6.15968104572683 N SA470 1 0.0 1.0 1 0 1 N N 0.0 0.0 5 1.15956573480182 1.21138990172034 1.21138990172034 1.15956573480182 4 - 6.2 0.990940289148492 HCT116-unstranded 10.0 384587 TGAAGTGAGGGTATCTGTTGAGAATCTCCACCTGCTTCTTCCAGTCAAATTCATTCCGCCAGTAGGAGATGACTTTCTTCAGGTAGTTGGAGTTGAAGCCATAGTGGAAGCAGCTGTCCTCCAAAGGTGGGGTGAAACGGAACTTATCGATCCTCTGGTGTAAGT|CCTTCATAGGGTCAGCGAGGTAAAGCTTCTCGGCAGCGCGGCTGAACTCCTCCCAGGTCTGGTACTGCGGCATCGTGGCCTAGAGTGGAAAAGTAAAGAGAAGCAAGGCCTCAGAACCCGGCCCAACAAACTACCTACGTCCGGGAGTCGCCAACCGACGCGAGTCCCAGCAGCCCCAAG 9 0.8979197549447501 0.503175702112203 0.11856809384107 N Y 3.52105259334297 3.48912663185998 3.48912663185998 0 0.9939569101418808 0.0 Y 0.468208092485549 N Y 11029 22149 ENSG00000143819 ENSG00000143742 - + 1 1 226033260 225978168 coding intron EPHX1 SRP9 225997794 225965531 + + 0.0 226019480 225965714 - + N - 0.583709515508646 N SA470 2 0.0 1.85 1 17 3 Y N 0.0 0.0 20 1.04296135923516 1.13365365134256 1.13365365134256 1.04296135923516 4 - 166.2 0.9023834279222028 HCT116-unstranded CGHSA0324 10.0 381632 GCCACGATGCCGCAGTACCAGACCTGGGAGGAGTTCAGCCGCGCTGCCGAGAAGCTTTACCTCGCTGACCCTATGAAG|ATTCAACTGACGAAGTTACGGGATCAAACTGCTGTAGGAGCTGCCAAACGCTTCTCTCCATTTCTGGCCGCGGGGCCGCGGACCGCCCTTTAAGTAGCCCGTTTTATCCCTGGCAGAGGTGGAGCCTTAGGCAGGCCTAGAGACTTTCCCGGGTCCTCCAGGCCGGGGAACGCCCCGCTCGGAGG 26 0.000786539913762745 0.460592303239993 0.8810250046878271 N Y 3.40591861909494 3.7061623612628 3.40591861909494 0 0.98722804972805 0.0 Y 0.961684149184149 N N 22149 11029 ENSG00000143742 ENSG00000143819 + - 1 1 225978168 226033260 coding upstream SRP9 EPHX1 225965531 225997794 + + 0.0 225965714 225997579 + - N - - N SA470 2 0.312138728323699 2.0 2 9 3 N N 0.0 0.312138728323699 9 0.7579284411833129 1.0623954218296 1.0623954218296 0.7579284411833129 4 - - 0.90000652313708 HCT116-unstranded CGHSA0324 10.0 941682 CCTTTGTTCCCAAGAAAGAGAAGAAATCAGTTGCTGAGGGCCTTTCTGGTTCTCTAGTTCAGGAACCTTTTCAGCTGGCTACTGAGAAGAGAGCCAAAGAGCGGCAGGAGCTGGAGAAGAGAATGGCTGAGGTAGAAGCCCAGAAAGCCCAGCAGTTGGAGGAGGCCAGACTACAGGAGGAAGAGCAGAAAAAAGAGGAGCTGGCCAGGCTACGGAGAGAACTG|CTAGAAAGACTTGAGTTAGACAAGCAGCAGCACACGCCTCCCTACCTCATGGCGACAGAAAATGGAGCAGTTGAGCTGGGAATTCAGAACCCATCAACAGACAAGGCACCTAAAGGTCCCACAGGTGAAAGACCCCTGGCTGCAGGGAAAGACCCTGGCCCCCCAGACCCAAAGAAAGCTCCGGATCCACCCACCCTG 24 0.902857827995259 0.587511597856907 0.64204603246035 N Y 3.2216342342823 3.4571608175836404 3.2216342342823 0 0.0 0.0 Y 0.0 N Y 28305 2000 ENSG00000088325 ENSG00000101306 + - 20 20 30389608 30422492 coding utr5p TPX2 MYLK2 30327074 30407111 + + 0.0 30386355 30407336 + - N - - N SA470 1 0.0 1.0 1 0 5 Y N 0.0 0.0 39 1.39925250679996 1.30856021469256 1.39925250679996 1.30856021469256 4 - - 0.9896535648606628 HCT116-unstranded 10.0 940858 AAGAAAGAGAAGAAATCAGTTGCTGAGGGCCTTTCTGGTTCTCTAGTTCAGGAACCTTTTCAGCTGGCTACTGAGAAGAGAGCCAAAGAGCGGCAGGAGCTGGAGAAGAGAATGGCTGAGGTAGAAGCCCAGAAAGCCCAGCAGTTGGAGGAGGCCAGACTACAGGAGGAAGAGCAGAAAAAAGAGGAGCTGGCCAGGCTACGGAGAGAACTG|TACCTACCGCACTGGGTTCTTCTGAAGACCATTTGGGTGGATCAACATGAGAGCATGCAGAGCGAGGCCAGGCACGTGGTCAGTACCGTATAGGCATCAGCTGTTACTTTTGCTTCCTGGAAGAGGCAGACTGTTAACTGGACCTTAAAGAAGAGAAATGGAGGAGAGGAGGACCGGGCCTGGAGAGGAGGGCCAGGCAGAGCAAAAGTAGTCAAGACTGGGGAAAGAGCTCCAA 8 0.7473764539842941 0.821914889446998 0.6916635067630121 N Y 3.2216342342823 3.64127736852694 3.2216342342823 5 0.0 0.0 Y 0.0 N N 28305 2000 ENSG00000088325 ENSG00000101306 + - 20 20 30389608 30422492 coding upstream TPX2 MYLK2 30327074 30407111 + + 0.0 30386355 30405401 + - N - - N SA470 1 0.461864406779661 1.0 1 0 5 N N 0.0 0.461864406779661 7 1.37981844420552 1.45755469458329 1.45755469458329 1.37981844420552 4 - - 0.9851508300601348 HCT116-unstranded 10.0 941790 GTGGGTGGATCCGGAGCTTTCTTTGGGTCTGGGGGGCCAGGGTCTTTCCCTGCAGCCAGGGGTCTTTCACCTGTGGGACCTTTAGGTGCCTTGTCTGTTGATGGGTTCTGAATTCCCAGCTCAACTGCTCCATTTTCTGTCGCCATGAGGTAGGGAGGCGTGTGCTGCTGCTTGTCTAACTCAAGTCTTTCTAG|TGTCTCTCTCTCCTACTAAAATGTTAGCTCCATGAAGGCAAGGTCTTTTTTTTTGTTCATTGACGTATTCCCAGAGACTAGAACAGTGCTAAGGTATACACAGTCATCCCTCAGTATCCGTGGAGAATTGGTTCCAGGACACCCCT 5 1.0 0.4795564403120151 0.677592896045438 N Y 3.4571608175836404 3.5748554449114103 3.4571608175836404 2 0.0 0.00976178042019848 Y 0.00976178042019848 N N 2000 28305 ENSG00000101306 ENSG00000088325 - + 20 20 30422492 30389608 utr5p downstream MYLK2 TPX2 30407111 30327074 + + 0.0 30407336 30391438 - + N - - N SA470 1 0.634328358208955 1.0 1 0 5 N N 0.0 0.634328358208955 6 0.9198789628036792 0.8680547958851621 0.9198789628036792 0.8680547958851621 4 - - 0.9905145275890508 HCT116-unstranded 10.0 733908 TAGAAGCCCCCGGGGGTGTTGTGGCAAGATGTGTGGTTCCCACAGACAAGAGTGGCTCCAAACTGGCACTCATTTTTATCAACACACTGAGTCCTCCCGTTCCCTACAAATCCATAGTTGCAAATACAGATCTTCTTCCCTTCTCTTTGCTGGCATGTGGCATGTTCATGGCAAGTGGCACAGACGTCTAA|ACGGAATGTTGGAAAGATGCAGAGTGGCTGATGGTGGAAAGATATTCTGGAAGTTTTTAGAGCCCGGCTTTTTAAAGCGATGCAAAGGACTATTGCTGAAATCCTTAGTCAGACCTTGGTCTTCTTGTCCCTCTCGAGGAAGCTGTACTGCTTGATGTTTGGACAGTGTAGCACGAAGCACTTTCCCATAAAGTCTCTGACCACTTAGATGGTTCA 18 0.943695976707973 0.959589320702366 0.4234533696749339 Y Y 3.64759957832565 3.27613928605339 3.27613928605339 2 0.0 0.0 Y 0.0 N Y 1331 6012 ENSG00000106868 ENSG00000119314 - + 9 9 114937688 115095947 coding intron SUSD1 PTBP3 114803065 114980715 - - 0.0 114919893 114989691 + - N - 0.567920561353548 N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 16 1.21138990172034 1.41868656939441 1.41868656939441 1.21138990172034 4 - 13.75 0.990940289148492 HCT116-unstranded 10.0 655733 TACCTTCATCTGCCCCCGGAGATTGTGCCTGCCACCCTACGCCGTAGCCGTCCAGAGACTGGCAGGCCTCGGCCTAAAGGTCTGGAGGGTGAGCGACCTGCGAGACTCACAAGAGGGGAAGCTGACAGAGATACCTACAGACGGAGTGCTGTGCCAC|GTGCTACTCGTGAGCAGTAGTCGCCATCCAGACAGATGGATTGTCCCTGGAGGAGGCATGGAGCCCGAGGAGGAGCCAAGTGTGGCAGCAGTTCGTGAAGTCTGTGAGGAGGTATGCATGGAGAAGAGAGGGCACAGCTGTGCCTCGTCATCATGAACCTGTCCTATCTGTGTAGTTCTTTAATATGTCAGCACTCACTGAATAAATATACAGTCACAGAA 85 0.506832032703379 0.7522439912123409 0.6261778975160429 Y Y 3.5676145660496603 3.6988816296077 3.5676145660496603 1 0.993647379123742 0.0 Y 0.0 N Y 97987 4017 ENSG00000124614 ENSG00000112664 + - 6 6 34393902 34360451 coding coding RPS10 NUDT3 34385231 34255997 - - 0.0 34389507 34309749 - + N - 3.62525770069893 N SA470 20 0.0 7.117647058823531 1 49 3 N Y 0.0 0.0 51 1.41220854852959 1.29560417296293 1.41220854852959 1.29560417296293 4 - 7.7843137254902 0.949070427975791 HCT116-unstranded CGHSA0652 10.0 1037320 CGTGGAATCCAAAGTTGAGCTTAATGCTTTAATGACTGATGAAACAATATCCAATGTGCCAATCCTTATCTTGGGTAACAAAATTGACAGAACAGATGCAATCAGTGAAGAAAAACTCCGTGAGATATTTGGGCTTTATGGACAGACCACAGGAAAGG|CATAATCACCAGCAACACCCGGGACAATAATACGGGGGCCACCTACCCCCACCTGAACTTCAGCATTCCCATCACGGTGCTCCAGCCGGCCCTGCAGCAGTACAGCCAGACCCAAGACCTAGGTGGCCTCCGTGAGCTGGACCGCGCTGCTGAGCCAGTCAGGGTGGTGTGGCGGTTGCAGCGGCCCCTGGCAGAGGCCCCGCGGAG 19 1.0 0.597285335203887 0.483941969912098 Y Y 3.4451253122330296 3.16935896602371 3.16935896602371 1 0.993688178736944 0.0 Y 0.0027322404371583602 N Y 7399 2075 ENSG00000079332 ENSG00000156521 + - 10 10 71930279 71906432 coding coding SAR1A TYSND1 71909960 71897737 - - 0.0 71913594 71899897 - + N - - N SA470 2 0.0 1.7857142857142905 1 11 2 Y Y 0.0 0.0 14 0.8810108376147909 1.35390636074626 1.35390636074626 0.8810108376147909 4 - - 0.9136344014660708 HCT116-unstranded 10.0 965012 ACTACAGAAGTTTTATATAGACCCATATAAGCTGCTGCCACTGCAGAGGTTTTTACCTCGACCTCCAGGTGAGAAAGGACCTCCAAGAGGTGGTGGCAGGGGAGGCCGAGGAGGAGGAAGAGGAGGAGGTGGCAGAGGTGGTGGCAGAGGCGGTGGTTTTAGAGGTGGAAGAGGAGGTGGAGGTGGGGGCTTCAGAGGAGGAAGAGGTGGTGGTTTCAGAGG|TTTATGCTGGATTGAATATTTTTTTTGGAATGGCAAGCATTGGATTACTCACGGTCGTGGCTGTGGACCGATACCTGACCATCTGCCTTCCTGACGTAGGGAGAAGAATGACCACCAACACTTACATCGGCTTGATTCTGGGAGCCTGGATCAATGGCCTGTTTTGGGCTTTGATGCC 31 0.914631041158361 0.498674729657366 0.434020275896805 Y Y 2.98098634482147 3.06000864534446 2.98098634482147 0 0.0 0.0 Y 0.0 N Y 2192 152 ENSG00000109534 ENSG00000180245 + - 4 4 110745893 110765760 coding coding GAR1 RRH 110736666 110749150 + + 0.0 110745189 110756522 + - N - - N SA470 2 0.307692307692308 1.13333333333333 1 2 4 N Y 0.307692307692308 0.0 15 1.43164261112404 1.12069760961293 1.43164261112404 1.12069760961293 4 - - 0.965463958567418 HCT116-unstranded 10.0 965009 TGGATGAAATATTTGGACAACTCAGAGATTTTTATTTTTCAGTTAAGTTGTCAGAAAACATGAAGGCTTCATCCTTTAAAAAACTACAGAAGTTTTATATAGACCCATATAAGCTGCTGCCACTGCAGAGGTTTTTACCTCGACCTCCAGGTGAGAAAGGACCTCCAAGAGGTGGTGGCAGGGGAGGCCGAGGAGGAGGAAGAGGAGGAGGTGGCAGAGGTGGTGGCAGAGGCGGTGGTTTTAGAGGTGGAAGAGGAGGTGGAGGTGGGGGCTTCAGAGGAGGAAGAGGTGGTGGTTTCAGAGG|TTTATGCTGGATTGAATATTTTTTTTGGAATGGCAAGCATTGGATTACTCACGGTCGTGGCTGTGGACCGATACCTGACCATCTGCCTTCCTGACGTAGGGAGAAGAATGACCACCAACACTTACATCGGCTTGATTCTGGGAGCCTGGATCAATGGCCTGTTTTGGGCTTTGATGCCTATCATAGGGTGGGCTAGTTATGCCC 21 4.76115325336738e-09 0.35305340703309995 0.548162494389319 Y Y 2.98098634482147 3.06000864534446 2.98098634482147 0 0.0 0.0 Y 0.0 N Y 2192 152 ENSG00000109534 ENSG00000180245 + - 4 4 110745893 110765760 coding coding GAR1 RRH 110736666 110749150 + + 0.0 110745189 110756522 + - N - - N SA470 2 0.0 1.11111111111111 1 1 4 N Y 0.0 0.0 9 1.01057125491108 1.10126354701849 1.10126354701849 1.01057125491108 4 - - 0.936894305939108 HCT116-unstranded 10.0 968024 AAGCTGCTGCCACTGCAGAGGTTTTTACCTCGACCTCCAGGTGAGAAAGGACCTCCAAGAGGTGGTGGCAGGGGAGGCCGAGGAGGAGGAAGAGGAGGAGGTGGCAGAGGTGGTGGCAGAGGCGGTGGTTTTAGAGGTGGAAGAGGAGGTGGAGGTGGGGGCTTCAGAGGAGGAAGAGGTGGTGGTTTCAG|AGGGAGAAGAATGACCACCAACACTTACATCGGCTTGATTCTGGGAGCCTGGATCAATGGCCTGTTTTGGGCTTTGATGCCTATCATAGGGTGGGCTAGTTATGCCCCAGATCCTACTGGTGCTACGTGTACCATAAACTGGAGGAAAAATGATAGGTAA 22 0.666466259770428 0.940078486713622 0.47987529043285 Y Y 2.98098634482147 3.65657572715995 2.98098634482147 0 0.0 0.0 Y 0.0526988636363637 N Y 2192 152 ENSG00000109534 ENSG00000180245 + - 4 4 110745893 110765760 coding intron GAR1 RRH 110736666 110749150 + + 0.0 110745189 110757163 + - N - 1.02702711581548 N SA470 2 0.3541666666666671 1.27272727272727 1 9 4 Y Y 0.3541666666666671 0.0 33 1.24378000604441 1.14013167220738 1.24378000604441 1.14013167220738 4 - 1.51515151515152 0.961026033320909 HCT116-unstranded 10.0 913762 AGGTGGAGGAGAAGAAGCGGGAGCAGGAACTCAAAGCAGCCGCTGATGGCGTACTATCTGAAGTGAGGAAAAAACAAGCAGATACCAAAAGAATGGTGGACATTCTACGGGCTTTGGAGAAATTGAGGAAACTGAGGAAAGAGGCTGCAGCGAGGAAA|GCACTGGCCCCCTCACCTTTTCCTTTCCAGCTGTTTGGGGCTCAGCTAAGTGACCACACAGGAGAGCAGTGAGGCCATTTGAGGCCTGAGCCTGGTCCTCAGGACTCGACTCTCTCTCCCTGCCATCAAGCAGCCTGCCCCAGCCCTGCCAGCCATCTCCACACTCCTGACAGAATGAATGCCCTCGATGGTGTTCCTTTCAAGTTGCCCAAGGGCTTTGTGATAGGCA 6 0.8228070793829009 0.8541659599312091 0.9428759503485392 Y Y 3.0248596833724304 3.0108860195580296 3.0108860195580296 0 0.0 0.0 Y 0.0025773195876288607 N Y 1172 130 ENSG00000090470 ENSG00000246922 + - 15 15 65426174 65407535 coding utr5p PDCD7 UBAP1L 65409717 65385338 - - 0.0 65421370 65398726 - + N - - N SA470 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 11 0.8810108376147909 1.43164261112404 1.43164261112404 0.8810108376147909 4 - - 0.975344568732888 HCT116-unstranded 10.0 796386 TCAGCCTCATCCGGGATTGGAGAAGAAAGAAGAGGAAGAAGAAGAAGAAGAATATGATGAAGGGTCTAATCTCAAAAAACAGACCAATAAGAACCGGGTGCAGTCAGGCCCCCGCACACCCAACCCCTATGCCTCGGACAACAGCAGCCTCATGTTTCCCATCCTGGTGGCCTTCGGAGTCTTCATTCCAACCCTCTTCTGCCTCTGCCG|ATTATTTATGTAAACCCGAAGACAACATCTACAGTATTGATTTCACCCGCTTCAAAATTCGAGATTTGGAGACAGGGACAGTACTTTTTGAGATTGCCAAACCTTGCGTTTCAGACCAGGAGGAGGATGAGGAGGAGGGAGGTGGAGACGTGGACATCAGCGCAGGACGTTTTGTCCGCTATCAGTTCACACCGGCATTTCTCCGCCTCCGGACAGTCGG 9 0.892292927180162 0.483824473230728 0.172694282953882 Y Y 3.43417115214159 3.43681151080804 3.43417115214159 0 0.0 0.0 Y 0.0 N N 39445 5562 ENSG00000110917 ENSG00000175970 + - 12 12 121139667 121161443 coding coding MLEC UNC119B 121124672 121148238 + + 0.0 121134341 121151077 + - N - - N SA470 1 0.152380952380952 1.0 1 0 1 Y Y 0.152380952380952 0.0 14 1.28912615209811 1.42516459025922 1.42516459025922 1.28912615209811 4 - - 0.9775239364318872 HCT116-unstranded 10.0 615863 AAGGGGAGGACAGGCGGCCCGCAGGACCCCCGCGGGAGCCGGTCAGGCGGCGGCGGCGGCTGGTGCTGGATCCGGGGGAGGCGCCGCTGGTTCCGGTGTACTCGGGGAAGGTTAAAAGCAGCCTTCGCCTTATCCCAGATGATCTATCCCTCCTGAAACTCTACCCTCCAGGGGATGAGGA|AGGTGGGATCGTCGGTGGGACCGGAGCGCGGGCGGGCGCGGCCCCCCGGGACCATGGCCGGGTCCGACACCGCGCCCTTCCTCAGCCAGGCGGATGACCCGGACGACGGGCCAGTGCCTGGCACCCCGGGGTTGCCAGGGTCCACGGGGAACCCGAAGTCCGAGGAGCCCGAGGTCCC 6 1.0 0.7450312015406321 0.7979693103535931 Y Y 3.18871505582277 2.92867122376953 2.92867122376953 0 0.994397627965044 0.0 Y 0.0 N Y 1422 4148 ENSG00000176953 ENSG00000169682 + - 16 16 28978418 28995869 coding utr5p NFATC2IP SPNS1 28962128 28985542 + + 0.0 28963525 28986422 + - N - - N SA470 1 0.14450867052023098 1.0 1 0 3 N Y 0.0 0.14450867052023098 5 0.971703129722196 0.965225108857382 0.971703129722196 0.965225108857382 4 - - 0.984907470884978 HCT116-unstranded 10.0 615865 TGACAGCGAAGGGGAGGACAGGCGGCCCGCAGGACCCCCGCGGGAGCCGGTCAGGCGGCGGCGGCGGCTGGTGCTGGATCCGGGGGAGGCGCCGCTGGTTCCGGTGTACTCGGGGAAGGTTAAAAGCAGCCTTCGCCTTATCCCAGATGATCTATCCCTCCTGAAACTCTACCCTCCAGGGGATGAGGAAGT|GTTCATCTCCAGTTACATGGTGTTGGCACCTGTGTTTGGCTACCTGGGTGACAGGTACAATCGGAAGTATCTCATGTGCGGGGGCATTGCCTTCTGGTCCCTGGTGACACTGGGGTCATCCTTCATCCC 8 0.817302502344837 0.628432513807496 0.31677370862221005 Y Y 3.329991337985 3.4439989565073 3.329991337985 0 0.9922721363570708 0.0 Y 0.0 N Y 1422 4148 ENSG00000176953 ENSG00000169682 + - 16 16 28978418 28995869 coding coding NFATC2IP SPNS1 28962128 28985542 + + 0.0 28963525 28989229 + - N - - N SA470 1 0.0 1.0 1 0 3 Y Y 0.0 0.0 6 0.8810108376147909 0.945791046262938 0.945791046262938 0.8810108376147909 4 - - 0.987423189925632 HCT116-unstranded 10.0 615864 AGGACAGGCGGCCCGCAGGACCCCCGCGGGAGCCGGTCAGGCGGCGGCGGCGGCTGGTGCTGGATCCGGGGGAGGCGCCGCTGGTTCCGGTGTACTCGGGGAAGGTTAAAAGCAGCCTTCGCCTTATCCCAGATGATCTATCCCTCCTGAAACTCTACCCTCCAGGGGATGAGGAAG|ATTTTCATCTTCATTGGAGAGACCCTCCTGTCCATGAACTGGGCCATCGTGGCCGACATTCTGCTGTACGTGGTGATCCCTACCCGACGCTCCACCGCCGAGGCCTTCCAGATCGTGCTGTCCCACCTGCTGGGTGATGCTGGGAGCCCCTACCTCATTGGCCTGATCTCTGACCGCC 13 0.9463740073759 0.541386661420525 0.274349167265494 Y Y 3.229987888500641 3.4278353619737403 3.229987888500641 0 0.9943661524788928 0.0 Y 0.0 N Y 1422 4148 ENSG00000176953 ENSG00000169682 + - 16 16 28978418 28995869 coding coding NFATC2IP SPNS1 28962128 28985542 + + 0.0 28963525 28994178 + - N - - N SA470 1 0.0 1.0 1 0 3 N Y 0.0 0.0 9 0.9781811505870108 1.13365365134256 1.13365365134256 0.9781811505870108 4 - - 0.987423189925632 HCT116-unstranded 10.0 613600 AGCGAAGGGGAGGACAGGCGGCCCGCAGGACCCCCGCGGGAGCCGGTCAGGCGGCGGCGGCGGCTGGTGCTGGATCCGGGGGAGGCGCCGCTGGTTCCGGTGTACTCGGGGAAGGTTAAAAGCAGCCTTCGCCTTATCCCAGATGATCTATCCCTCCTGAAACTCTACCCTCCAGGGGATGAGGAAG|ATTTTCATCTTCATTGGAGAGACCCTCCTGTCCATGAACTGGGCCATCGTGGCCGACATTCTGCTGGTGAGTTGCTGGGCAGCTCCAGGGTCAGCGCAGAGGCTGATGAGAGCAGAGTTGGGGTCAGGAGTGTTGCCTCTACCCCTCAAAGCCCAGCCTCAACCTACCTTCTGCAATAAATAAC 13 0.477914711204673 0.541386661420525 0.274349167265494 Y Y 3.229987888500641 3.4278353619737403 3.229987888500641 0 0.994579827021973 0.0 Y 0.0 N Y 1422 4148 ENSG00000176953 ENSG00000169682 + - 16 16 28978418 28995869 coding coding NFATC2IP SPNS1 28962128 28985542 + + 0.0 28963525 28994178 + - N - 0.93793406492299 N SA470 1 0.0 1.0 1 0 3 N Y 0.0 0.0 6 0.971703129722196 1.0170492757759 1.0170492757759 0.971703129722196 4 - 73.3333333333333 0.982601350355888 HCT116-unstranded 10.0 383686 CTTGGAACTGCACCAGGTGGAAAGGGAAATCGGGAAGAGAACACGGGAACTGAGTATGGAAAACCAGTGTTCTCTGGACATGAAAAGCAAACTGAATACAAGTAAACAAGCAGAAAATGGACAACCAGAACCACAAAACAAGGTTCCGGCTGAGGACCTTACATTGACATT|CAGGAAGGTTTATCTTTTGTCCTTGCTGCTCATTGGCTTCTGGGACTGCGTGACCTGTCACGGGAGCCCTGTGGACATCTGCACAGCCAAGCCGCGGGACATTCCCATGAATCCCATGTGCATTTACCGCTCCCCGGAGAAGAAGGCAACTGAGGATGAGGGCTCAGAACAGAAGATC 8 0.9843211303722672 0.839466218020067 0.7627274261086279 N Y 3.72721386824106 3.45976132345673 3.45976132345673 2 0.0 0.0 Y 0.0 N Y 3757 179 ENSG00000135870 ENSG00000117601 + - 1 1 173991435 173886516 coding intron RC3H1 SERPINC1 173900352 173872947 - - 0.0 173910403 173884057 - + N - - N SA470 1 0.0 1.0 1 0 1 Y N 0.0 0.0 13 1.10126354701849 0.900444900209235 1.10126354701849 0.900444900209235 4 - - 0.993361809521777 HCT116-unstranded 10.0 223049 GGAGGATATAAGTTCTATTTGCAGAATCGCAGTCTGCCTCAGTCAGATCCTGTATTAAAAGTAACTCTAGCAGTGTCTGATCTTCAAAAGTCCTTGAACTACTGGTGTAATCTACTGGGAATGAAAATTTATGAAAAAGATGAAGAAAAGCAAAGGGCTTTGCTGGGCTATGCTGATAACCAG|GACCCTTGAACATCTGTGAAGAAATGACTATTCTGCATGGAGGCTTCTTGCTGGCCGAGCAGCTGTTCCACCCTAAGGCACTGGCAGAATTAACAAAGTCTGACTGGGAACGTGTTGGACGGCCCATCGTGGAGGCCTTAAGGGAGATCTCCTCGGCTGCAGCACACTCCCAGCCCTTTGCCTGGAAGAAGAAAGCCCTGATCATCATCTGGGCCAAGGTTCT 45 0.7370351023165229 0.7238732612057529 0.656896130003954 Y Y 3.23318038376614 3.5110433747387795 3.23318038376614 0 0.0 0.0 Y 0.0 N Y 3228 11818 ENSG00000167699 ENSG00000179409 + - 17 17 685581 657239 coding coding GLOD4 GEMIN4 660337 647654 - - 0.0 674565 651272 - + N - - N SA470 1 0.135135135135135 1.0 1 0 1 N Y 0.135135135135135 0.0 48 1.19843385999071 1.37981844420552 1.37981844420552 1.19843385999071 4 - - 0.972266069210114 HCT116-unstranded 10.0 374655 CAGATTGGCTGCAGTGCGCCTGGCTACCTTCCTACCTCGCTGGCTTGGCATCCTCAGCAAAGTGAAGTCTTTGTCTTTGGTGATGAGAATGGGACAGTCTCCCTTGTGGACACCAAGAGTACAAGCTGTGTCCTGAGCTCAGCTGTACACTCCCAGTGTGTCACTGGGCTGGTGTTCTCCCCACACA|GGTGCTGCCCATAAACTCGTGTGTTATTTCACCAACTGGGCACACAGTCGGCCAGGCCCTGCCTCGATCTTGCCCCATGACCTGGACCCCTTTCTCTGCACCCACCTGATATTTGCCTTTGCCTCAATGAACAACAATCAGATTGTTGCTAAGGATCTCCAGGATGAGAAAATTCTCTACCCAGAGT 14 0.718742048771252 0.688755159962943 0.410914919629189 N Y 3.0971932416327403 3.46448140203209 3.0971932416327403 16 0.962666666666667 0.0 Y 0.0 N Y 5334 2394 ENSG00000116455 ENSG00000085465 + - 1 1 111991998 111970399 coding coding WDR77 OVGP1 111982512 111956936 - - 0.0 111985275 111969263 - + N - - N SA470 1 0.0 1.0 1 0 3 Y N 0.0 0.0 26 1.12717563047775 1.17899979739626 1.17899979739626 1.12717563047775 4 - - 0.941245495920068 HCT116-unstranded CGHSA0371 10.0 377746 CGCTTCTCCTCGGGGCCTCCAGCCTGAGTGGGCGCTGCTGGGCCGGCTCCCTCTGGCTTTTTAAGGACCCCTGTGCCGCCCCCAACGAAGGCTTCTGCTCCGCCGGAGTCCAAACGGAGGCTGGAGTGGCTGACCTCACTTGGGTTGGGGAGAGAGGTATTCTAGTGGCCTCCGATTCAGGTGCTG|CCCATAAACTCGTGTGTTATTTCACCAACTGGGCACACAGTCGGCCAGGCCCTGCCTCGATCTTGCCCCATGACCTGGACCCCTTTCTCTGCACCCACCTGATATTTGCCTTTGCCTCAATGAACAACAATCAGATTGTTGCTAAGGATCTCCAGGATGAGAAAATTCTCTACCCAGAGTTCAACAAACTAAAGGAGAGGAAC 64 0.828064825143875 0.758066875969445 0.646710317456809 N Y 3.6052936758779 3.4451253122330296 3.4451253122330296 0 0.97854976564654 0.0 Y 0.0 N Y 5334 2394 ENSG00000116455 ENSG00000085465 + - 1 1 111991998 111970399 coding coding WDR77 OVGP1 111982512 111956936 - - 0.0 111991241 111969263 - + N - - N SA470 2 0.0 1.0106382978723398 1 1 3 Y N 0.0 0.0 94 1.21786792258515 1.48346677804255 1.48346677804255 1.21786792258515 4 - - 0.994848257334812 HCT116-unstranded CGHSA0371 10.0 377747 ACAGTCAGTGTCTTGAGCTCTGGCACACAAGCTGTCAGTGGTAGCAAAGACATCTGCATCAAGGTTTGGGACCTTGCTCAGCAGGTGGTACTGAGTTCATACCGAG|GTGCTGCCCATAAACTCGTGTGTTATTTCACCAACTGGGCACACAGTCGGCCAGGCCCTGCCTCGATCTTGCCCCATGACCTGGACCCCTTTCTCTGCACCCACCTGATATTTGCCTTTGCCTCAATGAACAACAATCAGATTGTTGCTAAGGATCTCCAGGATGAGAAAATTCTCTACCCAGAGTTCAACAAACTAAAG 4 0.000935082689571934 0.199072087046752 0.515998921218083 N Y 3.75169126419961 3.4451253122330296 3.4451253122330296 0 0.990596767254625 0.0 Y 0.0 N Y 5334 2394 ENSG00000116455 ENSG00000085465 + - 1 1 111991998 111970399 coding coding WDR77 OVGP1 111982512 111956936 - - 0.0 111989717 111969263 - + N - - N SA470 1 0.0 1.0 1 0 3 Y N 0.0 0.0 10 1.23082396431478 1.21786792258515 1.23082396431478 1.21786792258515 4 - - 0.919274064449314 HCT116-unstranded CGHSA0371 10.0 370452 ACGAAGGCTTCTGCTCCGCCGGAGTCCAAACGGAGGCTGGAGTGGCTGACCTCACTTGGGTTGGGGAGAGAGGTATTCTAGTGGCCTCCGATTCAGGTGCTG|CCCATAAACTCGTGTGTTATTTCACCAACTGGGCACACAGTCGGCCAGGCCCTGCCTCGATCTTGCCCCATGACCTGGACCCCTTTCTCTGCACCCACC 64 2.73969859771548e-05 0.758066875969445 0.646710317456809 N Y 3.6052936758779 3.4451253122330296 3.4451253122330296 9 0.98994899489949 0.0 Y 0.0 N Y 5334 2394 ENSG00000116455 ENSG00000085465 + - 1 1 111991998 111970399 coding coding WDR77 OVGP1 111982512 111956936 - - 0.0 111991241 111969263 - + N - - N SA470 1 0.0 1.0 1 0 3 Y N 0.0 0.0 7 0.913400941938865 0.699626253399981 0.913400941938865 0.699626253399981 4 - - 0.9814975228619032 HCT116-unstranded CGHSA0371 10.0 167691 GGCGAGGGGGCTAGCGGCGACCGCTGGGGCGAGCGCGCCTGCGCGCTGGGTGATTTTTTCACGTGTCGCCAGGGCCGGACTGCGAGTCTCTTTGCGGCGCTACACTAGAGCAGAGTACGAGTCTGAGGCGGAGGGAGTAAT|GTGTCCTGCTATAGACTATACTAGACACACACTTGATGGTGCTGCATGTCTTCTGAATAGCAATAAATATTTTCCCAGCAGGGTTAGCATAAAGGAATCATCTGTAGCGAAACTAGGATCAGTATGCCGTAGGATTTACAGAATATTTTCACATGCTTATTTTCATCATCGGCAGATATTTGATGAATATGAAAA 21 0.7379148948546371 0.397905746980865 0.8425437395259251 Y Y 3.4439989565073 3.5482584762506004 3.4439989565073 3 0.978786539554265 0.0 Y 0.0 N Y 24944 4376 ENSG00000115541 ENSG00000115540 + - 2 2 198368181 198418423 coding coding HSPE1 MOB4 198364718 198380295 + + 0.0 198365163 198413060 + - N - - N SA470 2 0.0 1.4375 1 14 6 N Y 0.0 0.0 32 0.965225108857382 1.25025802690923 1.25025802690923 0.965225108857382 4 - - 0.913745254935347 HCT116-unstranded 10.0 5660 TGGAAGACCTCAGTCACCCTGTGGCAGAGCCCAGCTCGAGCCAGGCTGGCAGCATGAGCAGTGCAGGCCCAAGACCACTACCCAGTGGCCCAGCATCCCCCAAACGCAAGCTGGAAGCAGCCGAGGAACCACCTGGTGAAGAACTCAGCAAACGGGCCCGGGTGGCAGAGTTGCCAACCCCAGAGCTGCCGAGCAAGGATGCCTGAGA|GCTCACCCATGACATCAGCCTGGAGGAGTTTGAGGATGAAGACCTCTCGGAGATCACTGATGAGTGTGGCATCAGCTTACAGTGCAAAGACACCCTGTCCTTACGGCCCCCGCGCGCCGGGCTGCTCTCTGCGGGCGGCGGCGGCGCGGGGAGCCGGTTGCAGGCCGAGATGCTGCAG 30 0.922583297913888 0.932449535331796 0.27636730242612395 Y Y 3.42953077915294 3.5010341561346 3.42953077915294 0 0.0 0.0 Y 0.0 N Y 911 1672 ENSG00000121671 ENSG00000121653 + - 11 11 45904798 45928016 utr3p coding CRY2 MAPK8IP1 45868669 45907202 + + 0.0 45893784 45919636 + - N - - N SA470 3 0.11731843575419 1.1363636363636398 1 2 1 Y Y 0.0 0.11731843575419 22 1.12717563047775 1.15956573480182 1.15956573480182 1.12717563047775 4 - - 0.982639330421076 HCT116-unstranded 10.0 1132900 TTCCATCCCTCCAAAAAATTTACCCAGAGTCTTTTAGTCCTGCTATACAGCTGCACCTTGTACATCAAGCTCCATGTAATGTTCCTCCTTACCTCTCAAAGAATGAATCAAACCTTGGGGACCTCTTACTGGGCTTTCTTAAATATTATGCTACAGAATTTGA|ACAGATGTAAGCCAGTCAGTAGCTGGGCTTCATCTTGCATATTCCTAGGAGGAAATATGTTTATGAAGTGATGGCAAACGCGGCTGCTGCATTGGTCAGGAATGATAACCGCAGAGGAATTTAAACCCAGCCTTAAGGAGTAGGTAGAATTTACAGTTGCAGAAGTGGAGTATTGTCGG 21 0.9759449808037092 0.408937907726301 0.6017276981840329 Y Y 3.2668017624283303 3.63721963736088 3.2668017624283303 1 0.0 0.0 Y 0.0 N N 833 10433 ENSG00000164329 ENSG00000164309 + - 5 5 78982471 79096063 coding intron PAPD4 CMYA5 78907943 78985700 + + 0.0 78964851 79023365 + - N - 0.00925861847038119 N SA470 1 0.0 1.0 1 0 3 N Y 0.0 0.0 9 0.971703129722196 1.0170492757759 1.0170492757759 0.971703129722196 4 - 0.444444444444444 0.9915277251006072 HCT116-unstranded 10.0 1136384 AAAAATTTACCCAGAGTCTTTTAGTCCTGCTATACAGCTGCACCTTGTACATCAAGCTCCATGTAATGTTCCTCCTTACCTCTCAAAGAATGAATCAAACCTTGGGGACCTCTTACTGGGCTTTCTTAAATATTATGCTACAGAATTTGA|GTTATCAGACCAGGATGAAGAGGGAAAGATCAAGCAGGAGTATATCATATCTGACCCCTCCTTTTCCATGGTGACAGTCCAAAGGGAAGATAGTGGGATAACCTGGGAAACCAATTCAAGTAGATCTTCTACTCCTTGGGCTTCAGAAGAAAGTCAGACTTCTGGTGTGTGTAGTCGGGAAGGGTC 16 0.706760643203675 0.4799970970862801 0.521338074316345 Y Y 3.2668017624283303 3.27291628556435 3.2668017624283303 1 0.0 0.0 Y 0.00296735905044498 N Y 833 10433 ENSG00000164329 ENSG00000164309 + - 5 5 78982471 79096063 coding coding PAPD4 CMYA5 78907943 78985700 + + 0.0 78964851 79024738 + - N - - N SA470 1 0.0 1.0 1 0 3 Y Y 0.0 0.0 16 0.8745328167499771 0.9781811505870108 0.9781811505870108 0.8745328167499771 4 - - 0.9915277251006072 HCT116-unstranded 10.0 672976 CTATAACCTTGCCAACACGGCTCGATGCTGGACATACTTGACCGGGGTCATCCTAGGGAAAACACTATCCTCTGAGATCCCAGATCATGAGTTTTTCACAGCATATGGTCCTGATTATGTGCTGGAAATCACGCCAAGCTGCCGGCCAGACCGCAATGAGCCCCACCGAATCCAACAAATCCTCAACTACATCAAA|GCACAACAGCTCCAGCTGGCAGCATCACTTCCCGCCAATTTATCCAACTTCTGCCAAGGCTCTGAAATGCCAACAACGTCGAGGCCTGCACTTGATGTCAAGGGTGGCACCTCACCTGCGAAGGAGGATGCCAACCAAGAGATGAGCTCCGTGGCCTACTCCAACCTTGCGGTGAAAGATCGCAAAGCAGTGGCCATTC 15 0.8214137506581329 0.939352365943825 0.3858999210780589 Y Y 3.25103939547889 3.3733608154261803 3.25103939547889 0 0.0 0.0 Y 0.0 N Y 1133 150 ENSG00000147099 ENSG00000125931 + - X X 71792953 71527037 coding coding HDAC8 CITED1 71549366 71521488 - - 0.0 71571583 71522784 - + N - - N SA470 1 0.0574162679425837 1.0 1 0 1 Y Y 0.0100502512562814 0.0574162679425837 8 1.21138990172034 1.34742833988145 1.34742833988145 1.21138990172034 4 - - 0.988659864702272 HCT116-unstranded 10.0 6815 TAATAAAGGCATGGAATTGGGGCTCCCTGGGATCAGCCTGGGTCTTGAATGCCAGCCCTTTCGGCATACATAGCATTCCTACTGCATCTTGGTCAAAGGGATTCCATTCTACGTTCTCAGGATATCGTGCAAGGACCTTAGATTTGAATGTTCTTCTCAATGGTGTCTGCTCAAAATTTTCTCCTTCAGTCGTACTTGAAATGAAAGGGCTGGCACCATCCCTGGCTTTAGAAGCCTGTATGTACTGGCATAATG|CCTTCTGGTGGTCTCTGCTGCCAGGCGCCGCGAGACCCCGCGTCCCCGCTGCCCCGTCCCCCACGGGGGTCGTGTGGTGAGCGCCCAACTGCGATCGTTCGGCGACTCTGCCTTTCGCCATGGCTGCTGCAAGGTGAAGGGAGCGGTGCGGTGCCGCGCCCCCTAAA 31 0.00199729108312973 0.34179107957558696 0.53090170094651 Y Y 3.60103760561896 3.448886868952 3.448886868952 1 0.0 0.0 Y 0.0 N Y 3905 639 ENSG00000184014 ENSG00000166471 - + 11 11 9286937 9336327 coding coding DENND5A TMEM41B 9160372 9302201 - - 0.0 9229179 9335868 + - N - 0.368414656889129 N SA470 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 5 0.615411982157391 0.8097526081018299 0.8097526081018299 0.615411982157391 4 - 15 0.987535276796398 HCT116-unstranded 10.0 6813 TCCCTGGGATCAGCCTGGGTCTTGAATGCCAGCCCTTTCGGCATACATAGCATTCCTACTGCATCTTGGTCAAAGGGATTCCATTCTACGTTCTCAGGATATCGTGCAAGGACCTTAGATTTGAATGTTCTTCTCAATGGTGTCTGCTCAAAATTTTCTCCTTCAGTCGTACTTGAAATGAAAGGGCTGGCACCATCCCTGGCTTTAGAAGCCTGTATGTACTGGCATAATG|CCTTCTGGTGGTCTCTGCTGCCAGGCGCCGCGAGACCCCGCGTCCCCGCTGCCCCGTCCCCCACGGGGGTCGTGTGGTGAGCGCCCAACTGCGATCGTTCGGCGACTCTGCCTTTCGCCATGGCTGCTGCAAGGTGAAGGGAGCGGTGCGGTGCCGCGCCCCCTAAACAACAAAACTCTGTTGCAGGCTCC 31 0.512017458930246 0.34179107957558696 0.53090170094651 Y Y 3.60103760561896 3.448886868952 3.448886868952 1 0.0 0.0 Y 0.0 N Y 3905 639 ENSG00000184014 ENSG00000166471 - + 11 11 9286937 9336327 coding coding DENND5A TMEM41B 9160372 9302201 - - 0.0 9229179 9335868 + - N - 0.368414656889129 N SA470 1 0.0 1.0 1 0 2 N Y 0.0 0.0 18 1.53529094496107 1.19843385999071 1.53529094496107 1.19843385999071 4 - 4.16666666666667 0.986735316494148 HCT116-unstranded 10.0 6814 GTCTGCATTGCACTGCAGATCTGCTTGCTAGTCACCTCTTCATAAAATGTGAGGGCAAACCCAAATGTCCGAGAGCCATCCTCCCTTGTGATAATAAAGGCATGGAATTGGGGCTCCCTGGGATCAGCCTGGGTCTTGAATGCCAGCCCTTTCGGCATACATAGCATTCCTACTGCATCTTGGTCAAAGGGATTCCATTCTACGTTCTCAGGATATCGTGCAAGGACCTTAGATTTGAATGTTCTTCTCAATGGTGTCTGCTCAAAATTTTCTCC|CTTCTGGTGGTCTCTGCTGCCAGGCGCCGCGAGACCCCGCGTCCCCGCTGCCCCGTCCCCCACGGGGGTCGTGTGGTGAGCGCCCAACTGCGATCGTTCGGCGACTCTGCCTTTCGCCATGGCTGCTGCAAGGTGAAGGGAGCGGTGCGGTGCCGCGCCCCCTAAACAACAAAACTCTGTTGCAGGCTCCTTAC 22 2.21991232081982e-05 0.742254149423361 0.18721183845696104 Y Y 3.20972671000768 3.44143830342756 3.20972671000768 1 0.0 0.0 Y 0.0 N Y 3905 639 ENSG00000184014 ENSG00000166471 - + 11 11 9286937 9336327 coding coding DENND5A TMEM41B 9160372 9302201 - - 0.0 9228329 9335868 + - N - 0.368646667090691 N SA470 1 0.0 1.0 1 0 2 N Y 0.0 0.0 6 1.04943938009997 0.90692292107405 1.04943938009997 0.90692292107405 4 - 12.5 0.985077794568294 HCT116-unstranded 10.0 222006 GTGTGAGACAGCTGAGAGAAGTTCCCCGAGCTCCTGAGGACGTCATTCAGGCCTTGGAAGAGAAAAAGCCCACCCCCAAAGAGTCTGGCAATAGCCAAGAACTGGCCAGGGGCCCCCAGGAGAGGACCCCCTGTGGGCCTGCTCTGCGGGAAGGCGAGGCTGCCGCTGTGGAGGGCCCGTGCCCGAGCCAGGAGTCCCTGTCCCAGGAGGAAAACCCGGAACCCACGGAGGATGAAAGGA|AGGAGCAGGAGCGGCTTCGCTTGGAGCAGGAGCGAGAGCAGGAACAGAAGAAGGCCAATAGCCTGGCCAGGCTGGCACATACCCTTCCTGTGGAGGAACCCCGCATGGAGGCGCCACCCCTGCCTCTGTCTCCACCGGCTCCCCCGCCGGCACCCCCACCACCACTTGCCACCCCTGCCCCACTGACTGTC 23 1.0 0.8127606554498209 0.605143286254635 Y Y 2.94955489687844 3.00822273295264 2.94955489687844 1 0.0 0.0 Y 0.0 N N 6000 6358 ENSG00000127804 ENSG00000070444 + - 17 17 2415185 2304412 coding coding METTL16 MNT 2319343 2287354 - - 0.0 2323551 2298748 - + N - - N SA470 1 0.4 1.0 1 0 1 Y Y 0.0 0.4 32 1.47698875717774 1.2632140686388602 1.47698875717774 1.2632140686388602 4 - - 0.98341913270282 HCT116-unstranded 10.0 109235 AATCTGCTGATGAACTCCAGAAGATGCTGCAGGAGGACGAGCTGCGGGATGCAGTGCTGCTGGTATTTGCCAACAAGCAGGACATGCCCAACGCCATGCCCGTGAGCGAGCTGACTGACAAGCTGGGGCTACAGCACTTACGCAGCCGCACG|ACCTGGGAGATCTTGGTGAGCAATGAGCATGAGACACAGGCCGTGGTGCGACTAAAGAGCGTGCAGGGCCTCTACCTGCTGTGTGAGTGTGATGGCACCGTGTGTTATGGCCGCCCAAGGACCAGCCACCATGGGTGCTTTCTACTGCGTTTCCACCGGAACAGCAAGTGGACCCTCCAGTGCCTAATCTCTGGTCGTTATTTGGAGTCCAATGGCAAGGACGTGTTTTGCACTTCCCACGTCCTCTCAGCTTACCA 65 0.262197780932791 0.7301060994326259 0.6629280541695649 Y Y 3.40272612382943 3.48337348351473 3.40272612382943 0 0.0 0.0 Y 0.0 N Y 22264 974 ENSG00000004059 ENSG00000106328 + - 7 7 127231759 127242198 coding coding ARF5 FSCN3 127228399 127231463 + + 0.0 127231142 127235361 + - N - - N SA470 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 13 0.965225108857382 0.8356646915610891 0.965225108857382 0.8356646915610891 4 - - 0.980464572216104 HCT116-unstranded CGHSA0795 10.0 941819 GCACTCCCCCACCAACCCCGGGTTCATGACGTGCAGCGATGACTTCAGAGCGCGGTTTTGGTACCGGAGATCGACCACTGACTGAGCCACCCTCTCCGTAGGGTTCTTTCTCGAGGACTCTACCCTCCTCCCCCACGTCCTGTCTCAGCTGCAGTC|AAAGTTTGCCTGCTGGGAGAGTCTTTTTGATCGTTTCCCATGTGTTGTCAGATAGCTCCATAGAATTCAGTTTCTGAGAACCAGCCAGAAGCATGCAGTGACATTGCACAATCTGCCTCTGAAGCTGGAGATACTAGCTGCAGAGCTCAGGGGAGCTGCTCCACATCACCGACATGAAGGGAACAGGCATCAT 4 0.524558586155085 0.420808965941297 0.7770122216811609 Y Y 3.0537745638283904 3.21431880750704 3.0537745638283904 0 0.0 0.0 Y 0.0 N N 5749 3569 ENSG00000101138 ENSG00000087589 + - 20 20 54979518 55034396 utr3p utr5p CSTF1 CASS4 54967427 54987168 + + 0.0 54978854 54987342 + - N - - N SA470 1 0.0 1.0 1 0 4 N Y 0.0 0.0 6 0.926356983668494 0.939313025398123 0.939313025398123 0.926356983668494 4 - - 0.9792059984126672 HCT116-unstranded 10.0 951041 TGAAAGAGAAAAAAATCTGGATGACAAAGCATATCGTAATATCAAGGAACTGGAAAATTATGCTGAAAACACACAGAGCTCTCTTCTTTACTTAACACTAGAAATATTG|GGCTATTAGTGAAAGATGGTGGATCGCTTGGCAAACAGTGAAGCAAATACTAGACGTATAAGTATAGTGGAAAACTGTTTTGGAGCAGCTGGTCAACCTTTAACTATACCT 23 2.9977538113078996e-05 0.987402548107714 0.28525368617243496 Y Y 3.3059151696105804 3.64553343878587 3.3059151696105804 0 0.0 0.0 Y 0.0 N Y 661 3340 ENSG00000156170 ENSG00000175895 + - 8 8 96128683 96168912 coding intron NDUFAF6 PLEKHF2 95907995 96146032 + + 0.0 96057875 96166259 + - N - 0.0675839597175589 N SA470 1 0.0 1.0 1 0 5 Y Y 0.0 0.0 5 0.680192190805537 0.492329585725913 0.680192190805537 0.492329585725913 4 - 15.4 0.98060508852788 HCT116-unstranded 10.0 951165 GCAGAAGAAAGGTGTTCCTTCCCATGGATATTTGTATGCTGCATGGTGTTTCACAAGAGGACTTTCTACGGAGGAACCAAGATAAAAATGTGAGAGATGTAATATATGACATTGCCAGTCAAGCACACTTGCACCTAAAGCATGCTA|TTAGTGAAAGATGGTGGATCGCTTGGCAAACAGTGAAGCAAATACTAGACGTATAAGTATAGTGGAAAACTGTTTTGGAGCAGCTGGTCAACCTTTAACTATACCTGGACGAGTTCTTATTGGAGAAGGAGTATTGACTAAGTTGTGCAGGAAAAAGCCCAAAGCAAGGCAGTTTTTCTTGTTTAATGATATTCTTGTATATGGCAATAT 30 0.326203156464582 0.9887284809194828 0.6167032584003871 Y Y 3.5210127405496205 3.59425138750382 3.5210127405496205 0 0.0 0.0 Y 0.0 N Y 661 3340 ENSG00000156170 ENSG00000175895 + - 8 8 96128683 96168912 coding utr5p NDUFAF6 PLEKHF2 95907995 96146032 + + 0.0 96060786 96166259 + - N - - N SA470 1 0.0 1.0 1 0 5 N Y 0.0 0.0 27 1.03000531750553 1.34742833988145 1.34742833988145 1.03000531750553 4 - - 0.992707302473058 HCT116-unstranded 10.0 949473 GATGTAATATATGACATTGCCAGTCAAGCACACTTGCACCTAAAGCATG|CTATTAGTGAAAGATGGTGGATCGCTTGGCAAACAGTGAAGCAAATACTAGACGTATAAGTATAGTGGAAAACTGTTTTGGAGCAGCTGGTCAACCTTTAACTATACCTGGACGAGTTCTTATTGGAGAAGGAGTATTGACTAAGTTGTGCAGGAAAAAGCCCAAAGCAAGGCA 14 0.000276289511921899 0.564467541717231 0.856764739132242 Y Y 3.5303596117444904 3.64553343878587 3.5303596117444904 0 0.0 0.0044642857142857 Y 0.0044642857142857 N Y 661 3340 ENSG00000156170 ENSG00000175895 + - 8 8 96128683 96168912 coding utr5p NDUFAF6 PLEKHF2 95907995 96146032 + + 0.0 96060786 96166259 + - N - - N SA470 1 0.0 1.0 1 0 5 N Y 0.0 0.0 5 0.984659171451826 0.900444900209235 0.984659171451826 0.900444900209235 4 - - 0.985758526916328 HCT116-unstranded 10.0 949811 CAAGAATATCATTAAACAAGAAAAACTGCCTTGCTTTGGGCTTTTTCCTGCACAACTTAGTCAATACTCCTTCTCCAATAAGAACTCGTCCAGGTATAGTTAAAGGTTGACCAGCTGCTCCAAAACAGTTTTCCACTATACTTATACGTCTAGTATTTGCTTCACTGTTTGCCAAGCGATCCACCATCTTTCACTAATAG|CCGCAGCAGCTCCAGGCAGTAGTGGTCAGTGCCCCAGGCGCCCGGTCCGCTGGCCGCAGCCACGCTCCGCCCAGACACCTCCGGCCCGGGCAGCCGCCGCATGCGCGCGTACAGACCCAGAGGCGGCCGGCGGCAGCACAGGCCGGGGATGCCAAGCCGCAACGGCCCCCAGACAGAGCCGTGCGCGGAGGCCGCCATGACGCCGGCACTGCGTGCCCT 33 0.71815478243932 0.7748922195907589 0.56230221460998 Y Y 3.64553343878587 3.164599034655 3.164599034655 0 0.0 0.0 Y 0.0 N Y 3340 661 ENSG00000175895 ENSG00000156170 - + 8 8 96168912 96128683 utr5p intron PLEKHF2 NDUFAF6 96146032 95907995 + + 0.0 96166259 96037433 - + N - 0.291117135551453 N SA470 1 0.00985221674876847 1.0 1 0 5 Y Y 0.00985221674876847 0.0 28 1.3150382355573702 1.25025802690923 1.3150382355573702 1.25025802690923 4 - 2.64285714285714 0.9937791697056568 HCT116-unstranded 10.0 951167 TAATCTGACTAAAAGATGGCTTATGAAAATCGTCGATGAAAGAGAAAAAAATCTGGATGACAAAGCATATCGTAATATCAAGGAACTGGAAAATTATGCTGAAAACACACAGAGCTCTCTTCTTTACTTAACACTAGAAATATT|GGGCTATTAGTGAAAGATGGTGGATCGCTTGGCAAACAGTGAAGCAAATACTAGACGTATAAGTATAGTGGAAAACTGTTTTGGAGCAGCTGGTCAACCTTTAACTATACCTGGACGAGTTCTTATTGGAGAAGGAGTATTGACTAAGTTGTGCAGGAAAAAGCCCAAAGCAAGGCAGTTTTTCTTGTTTAATGATATTCTTGTATATGGC 23 0.524088977043495 0.92989459609031 0.295213953525924 Y Y 3.20591172012622 3.6025651889288097 3.20591172012622 0 0.0 0.0 Y 0.0 N Y 661 3340 ENSG00000156170 ENSG00000175895 + - 8 8 96128683 96168912 coding utr5p NDUFAF6 PLEKHF2 95907995 96146032 + + 0.0 96057875 96166259 + - N - - N SA470 1 0.0141509433962264 1.0 1 0 5 Y Y 0.0 0.0141509433962264 30 0.958747087992567 1.3733404233407 1.3733404233407 0.958747087992567 4 - - 0.989382928546409 HCT116-unstranded 10.0 1102405 CTTGCAGTGAAGTTGAGGCCATGTGACTGGTCTTGGGCCAATGGAATGGGTGCAGAAGGGACACAGCCCATTTCTAGACTCAGCCTGAAATGTCCTCCATAATCCTTACTCTTTCTCCCTTCACTCACTGGCTGCAGGAAGCTGAGAATTATCCTTGGACTTACATAAAGCATTTTGGACTTTAT|GTCTCCTCAGGAAGATGAACCCTCCCTTGCAGAAGCGGGAGCTGCCCCAGAGAGTCTGTGTGAGATGAAGACAGAGGCCCAGCCTTCGACATCCTTGCTGGCAAACACCTCATGGACTGGCACAGTGATTTCTGACAGTGTCCCAGGAAGTCAAACGTGGGAAGACAAGGGTTCATTGACCCGGTCTGCAACA 10 1.0 0.5934589240161171 0.62496058996228 Y Y 3.40744620240479 3.5167965230840297 3.40744620240479 0 0.0 0.0 Y 0.008029665549454609 N N 173 95 ENSG00000197813 ENSG00000063127 + - 19 19 49843559 49828474 utr3p utr5p AC011450.1 SLC6A16 49831424 49792897 - - 0.0 49834874 49814668 - + N - - N SA470 1 0.84180790960452 1.0 1 0 1 N Y 0.84180790960452 0.0 7 1.07535146355923 1.18547781826108 1.18547781826108 1.07535146355923 4 - - 0.9848592344896208 HCT116-unstranded 10.0 672132 CGTGAAGTCAAAGCAATGCGCACGCGCAGTGGCTTTGAAGGCGGGGCAACAAAGCCTGTGGCCGATGTGGCGCTCCTCGGCCCGCGCTTCAGTGGTTATGACAGTGTTCGCTCTAAGGGGAGAAGGAATGTGTGACCATTTCCAACG|GTCAGTCACCACGAACAGGGGCACTCGGCATGCTGCCCCAGCACTGGAGAAGCAGCGCTGTGGGGGCAATCTGTCACACTCTCAGAGTCTGGGACTTGACTTGCTACCAACAACTGCTGTGCAATTCTGCTGAGCAGGAATATCATGAGCTGTTCAATAATGACGGACGCATTGGTT 7 0.874657336765127 0.885450991847596 0.0309951240082548 Y Y 3.7574444125448494 3.47804449069255 3.47804449069255 0 0.993218210361067 0.00307692307692309 Y 0.00307692307692309 N Y 738 509 ENSG00000230844 ENSG00000147119 + - X X 46407671 46457843 intron utr3p ZNF674-AS1 CHST7 46404928 46433219 + + 0.0 46405062 46457195 + - N 0.752488466733129 1.23706106210275 N SA470 1 0.0 1.0 1 0 2 N Y 0.0 0.0 12 0.8874888584796059 0.939313025398123 0.939313025398123 0.8874888584796059 4 7.41666666666667 4.41666666666667 0.992339981631 HCT116-unstranded 10.0 380171 CTGAATGAACTGAAGAACTTCATCCCATTGACCATCAAGTATTAGCTGCCTCAGGAAAAGCATATCATCTGAAAACAGGCCATTTATGACTCCACTTTCCTTCTCCAGGGCCAGCATACTAATGTGAAGCTTCTTTGAATTCAGGAAGTCCAAAATTAGCTTAATGATTTCAACCTCTTTTACATTCACTGTTTCTTCAGCCGTCATATTGATAGCC|GTGGGGTCTTCTTCCTCATCTGCCATCCCACTAGCACGCCAACTCACAGCGTCCTGCCGGCTGGCTCCCAGCTGGTTACACTACTTCCGCCGCCTCACTTCCGGTGACGCGCGGG 9 0.9340424645892328 0.3656833422217801 0.8856793969824142 N Y 3.5203902459336605 3.47911741325579 3.47911741325579 0 0.0 0.0 Y 0.0463506985246115 N Y 2971 238 ENSG00000085433 ENSG00000197780 - + 1 1 109584850 109618624 utr5p coding WDR47 TAF13 109512836 109605121 - - 0.0 109566143 109618543 + - N - 0.53218340782561 N SA470 1 0.0 1.0 1 0 1 N N 0.0 0.0 8 0.8810108376147909 0.563587815238874 0.8810108376147909 0.563587815238874 4 - 10.625 0.98740220785073 HCT116-unstranded 10.0 1102076 AACCTGGCTGTCCTGAAGCTGTACCAGTTCAACCCAGCCTTCTTTCAGACCACGGTCACCGCCCAGATCCTGCTGAAGGCCCTCACCAACTTGCCGCACACAGACTTCACCCTGTGCAAGTGCATGATCGACCAGGCACATCAAGAAGAACGGCCAATCCGACAGATTTTGTACCTCGGGGACCTGCTGGAGACCTGCCATTTCCAGGCCTTCTGG|ACCTTCACGGCATGGTGCAACTCCCACCTGCGGAAGGCAGGCACACAGATCGAGAACATTGATGAGGACTTCCGAGACGGGCTCAAGCTCATGCTGCTCCTGGAGGTCATATCAGGGGAGCGGTTACCTAAGCCGGAGCGGGGGAAGATGAGAGTGCACAAAATCAACAATGTGAACAAAGCGCTGGACTTTATTGCCAGC 40 0.892650065581619 0.5422509368092739 0.339610393369987 Y Y 3.41592783769912 3.6659225983548303 3.41592783769912 0 0.995036777833322 0.0 Y 0.0 N Y 20854 100959 ENSG00000178982 ENSG00000130402 + - 19 19 39127595 39222223 coding coding EIF3K ACTN4 39109735 39138289 + + 0.0 39116742 39191240 + - N - - N SA470 2 0.0 1.04347826086957 1 2 1 Y Y 0.0 0.0 46 1.39925250679996 1.327994277287 1.39925250679996 1.327994277287 4 - - 0.9775239364318872 HCT116-unstranded 10.0 161504 ATTAAGGACTATCGGGAGAAAGTGGAGTCCGAGCTGAGATCCATCTGCACCACGGTGCT|GCTTATTATAGCCCAGTTGGGAAGAAAAATATCTATTTGAATAGTGGTTTGACGAGCACAAAGAATTATGGTAAAACCATCCTTACAAAGGAAGCTGACCTGGTTACAACTCATGAATTGGGACATAATTTTGGAGCAGAACATGATCCGGATGGTCTAGCAGAATGTGCCCCGAATGA 2 1.31036878192775e-06 0.7816712051404751 0.694951188464579 Y Y 3.73336824417043 3.2876854355372407 3.2876854355372407 0 0.0 0.0 Y 0.0 N Y 57159 3274 ENSG00000134308 ENSG00000151694 + - 2 2 9771143 9695921 coding coding YWHAQ ADAM17 9724101 9628615 - - 0.0 9770288 9658118 - + N - - N SA470 2 0.0 1.33333333333333 1 2 2 N Y 0.0 0.0 6 0.958747087992567 0.926356983668494 0.958747087992567 0.926356983668494 4 - - 0.963702513787381 HCT116-unstranded 10.0 220652 ATCTTGGTTTGCTCTTTGATGCTCTTGATCAGGCAGTTGAAAATCAAAGAGGTCACTCTGGGGAAGTTATATGAAGCCTACAGTAAAGTCTGTCGCAAACAGCAGGTGGCGGCTGTGGACCAGTCAGAGTGTTTGTCACTTTCAGGGCTCTTGGAAGCCAGGGGCATTTTAGGATTAAAGAGAAACAAGGAAACCCGTTTGACAAAG|CATCACAGGACATGGCCCCCTCAGCCACCTAGCTGGGGCCCATCTAGGAGTGGCATCTTTTTTGGTGCCCTGAAGGCCAGCTCTGGACCTTCCCAGGAAAAGTGCCAGCTCACAGAACTGCTTGACCAAAGGACCGGCTCTTGAGACATCCCCCAACCCACCTGGCCCCCAGCTAGGGTGGGGGCTCCAGGAGACTGAGATTAGCCTGCC 19 1.0 0.460823291996476 0.18941733431091606 Y Y 3.0460044763065297 3.25360004855864 3.0460044763065297 0 0.0 0.0 Y 0.0 N Y 5739 7779 ENSG00000094804 ENSG00000131759 + - 17 17 38459171 38513094 coding utr5p CDC6 RARA 38443885 38465444 + + 0.0 38457860 38487109 + - N - - N SA470 1 0.0 1.0 1 0 13 N Y 0.0 0.0 18 1.28912615209811 1.30856021469256 1.30856021469256 1.28912615209811 4 - - 0.971288441686692 HCT116-unstranded 10.0 216901 CACAGATAGAATTCTACCTAGGCTTCAAGCTAGAGAAAAATGTAAGCCACAGCTGTTGAACTTCCCACCTTATACCAGAAATCAGATAGTCACTATTTTGCAAGATCGACTTAATCAGGTATCTAGAGATCAGGTTCTGGACAATGCTGCAGTTCAATTCTGTGCCCGCAAAGTCTCTGCTGTTTCAGGAGATGTTCGCAAAGCACTGGATGTT|TGCAGCATCACAGGACATGGCCCCCTCAGCCACCTAGCTGGGGCCCATCTAGGAGTGGCATCTTTTTTGGTGCCCTGAAGGCCAGCTCTGGACCTTCCCAGGAAAAGTGCCAGCTCACAGAACTGCTTGACCAAAGGACCGGCTCTTGAGACATCCCCCAACCCACCTGGCCCCCAGCTAGGGTGGGGGCTCCAGGAGACTGAGATTAGCCTGCCCTCTTTGGACAGCAGCTCCAGGACAGGGCGGGTGGGC 302 1.0 0.940463919989275 0.562910857023964 Y Y 3.55553920790569 3.2829255041685297 3.2829255041685297 2 0.0 0.0 Y 0.0 N Y 5739 7779 ENSG00000094804 ENSG00000131759 + - 17 17 38459171 38513094 coding intron CDC6 RARA 38443885 38465444 + + 0.0 38451708 38487109 + - N - 0.0418762976262315 N SA470 1 0.0 1.0 1 0 13 N Y 0.0 0.0 240 1.43164261112404 1.6648513622573602 1.6648513622573602 1.43164261112404 4 - 0.729166666666667 0.994848257334812 HCT116-unstranded 10.0 220211 TTGGTCAAGCAGTTCTGTGAGCTGGCACTTTTCCTGGGAAGGTCCAGAGCTGGCCTTCAGGGCACCAAAAAAGATGCCACTCCTAGATGGGCCCCAGCTAGGTGGCTGAGGGGGCCATGTCCTGTGATGCT|GCAAACATCCAGTGCTTTGCGAACATCTCCTGAAACAGCAGAGACTTTGCGGGCACAGAATTGAACTGCAGCATTGTCCAGAACCTGATCTCTAGATACCTTCAGACAAGACATAGAAGATGACAGTTTGAACCATAAGATTCTCCCTCTGTAATTTAGGTCCCAAGCATAAATATTTTCACATTTAACCCTAA 184 1.0 0.624787400441657 0.4255153581528789 Y Y 3.26294691975352 3.46128890676658 3.26294691975352 1 0.0 0.0 Y 0.0 N Y 7779 5739 ENSG00000131759 ENSG00000094804 - + 17 17 38513094 38459171 utr5p coding RARA CDC6 38465444 38443885 + + 0.0 38487109 38451708 - + N - 7.69185005965553 N SA470 1 0.0 1.0 1 0 13 N Y 0.0 0.0 12 0.654280107346279 0.8615767750203471 0.8615767750203471 0.654280107346279 4 - 28.4166666666667 0.992795537076556 HCT116-unstranded 10.0 220656 TCTGAGCCTCTGATTCCCAAGAGGGTTGGTCTTATTCACATATCCCAAGTCATCTCAGAAGTTGATGGTAACAGGATGACCTTGAGCCAAGAAGGAGCACAAGATTCCTTCCCTCTTCAGCAGAAGATCTTGGTTTGCTCTTTGATGCTCTTGATCAGGCAGTTGAAAATCAAAGAGGTCACTCTGGGGA|AGCATCACAGGACATGGCCCCCTCAGCCACCTAGCTGGGGCCCATCTAGGAGTGGCATCTTTTTTGGTGCCCTGAAGGCCAGCTCTGGACCTTCCCAGGAAAAGTGCCAGCTCACAGAACTGCTTGACCAAAGGACCGGCTCTTGAGACATCCCCCAACCCACCTGGCCCCCAGCTAGGGTGGGGGCTCCAGG 38 1.0 0.9300822412324 0.6362056603848549 Y Y 3.404223201915741 3.26294691975352 3.26294691975352 0 0.0 0.0 Y 0.0 N Y 5739 7779 ENSG00000094804 ENSG00000131759 + - 17 17 38459171 38513094 coding utr5p CDC6 RARA 38443885 38465444 + + 0.0 38457282 38487109 + - N - - N SA470 1 0.0 1.0 1 0 13 N Y 0.0 0.0 32 1.25025802690923 1.14660969307219 1.25025802690923 1.14660969307219 4 - - 0.994848257334812 HCT116-unstranded 10.0 220655 CTGTTGAACTTCCCACCTTATACCAGAAATCAGATAGTCACTATTTTGCAAGATCGACTTAATCAGGTATCTAGAGATCAGGTTCTGGACAATGCTGCAGTTCAATTCTGTGCCCGCAAAGTCTCTGCTGTTTCAGGAGATGTTCGCAAAGCACTGGATGTTTGCAG|CCATTGAGACCCAGAGCAGCAGTTCTGAAGAGATAGTGCCCAGCCCTCCCTCGCCACCCCCTCTACCCCGCATCTACAAGCCTTGCTTTGTCTGTCAGGACAAGTCCTCAGGCTACCACTATGGGGTCAGCGCCTGTGAGGGCTGCAAGGGCTTCTTCCGCCGCAGCATCCAGAAGAACATGGTGTACACGTGTCACCGGGACAAGAACTGCATCATCAACAAG 11 1.0 0.530866500892718 0.680554172171481 Y Y 3.4780843434859 3.4120729950243103 3.4120729950243103 0 0.0 0.0 Y 0.0 N Y 5739 7779 ENSG00000094804 ENSG00000131759 + - 17 17 38459171 38513094 coding coding CDC6 RARA 38443885 38465444 + + 0.0 38451708 38504568 + - N - - N SA470 1 0.0 1.0 1 0 13 N Y 0.0 0.0 7 0.8939668793444209 1.29560417296293 1.29560417296293 0.8939668793444209 4 - - 0.992612272614827 HCT116-unstranded 10.0 941332 CCACCATACAAGAGCTATGAGCAACTGAAGGAAAAGCTGTTGTTTGCCATAGAAGAAACAGAAGGATTTGGACAAGAGTAACTTCTGAGAACTTGCACCATGAATGGGCAAGAACTTATTTGCAATGTTTGTCCTTCTCTGCCTGTTGCACATCTTGTAAAATTGGACAATGGCTCTTTAGAGAGTTATCTGAGT|AGGACCCAGAAACGTTTGCGGCCTGCCGGAACAGGACAACATAGGGCTCTGGGAAGAGTCCCCCTTTCAGAGGTGAGAACAAGACAGAACACACAGATGTGAAGTGCCTTCTGCTAGGTAACGCGAGGCGGGGCTGAGCTCGGATTCTAAAGACTCCCAGGCCAGCCCTAACCAATTCAT 6 1.0 0.208256802972439 0.110893909020975 Y Y 3.56488607910057 3.3880901126057297 3.3880901126057297 0 0.0 0.0 Y 0.0 N N 1230 7693 ENSG00000078747 ENSG00000125971 + - 20 20 33099198 33128762 utr3p upstream ITCH DYNLRB1 32951041 33104214 + + 0.0 33095713 33103234 + - N 4.54446062035256 - N SA470 1 0.0 1.0 1 0 3 N Y 0.0 0.0 8 1.25673604777404 1.09478552615367 1.25673604777404 1.09478552615367 4 2.75 - 0.9408972747566908 HCT116-unstranded 10.0 941331 AGCAACTGAAGGAAAAGCTGTTGTTTGCCATAGAAGAAACAGAAGGATTTGGACAAGAGTAACTTCTGAGAACTTGCACCATGAATGGGCAAGAACTTATTTGCAATGTTTGTCCTTCTCTGCCTGTTGCACATCTTGTAAAATTGGACAATGGCTCTTTAGAGAGTTATCTGAGT|ACACTCCTGGAAGGAGAACCAAATCCTTCCTCACTGAAGAGCAGCTACTGTGGAATGAAACTTTGGAGTTAGATCATCGTTGAATCCAGCAAGCTACAGTGCCTGGGAGAAACAGCATTTATAAAGTATCGAGGTTACCGATACTTCCCTGAAGCTACCGGA 5 1.0 0.3584575956584811 0.24196265975668 Y Y 3.56488607910057 3.38759559906577 3.38759559906577 0 0.0 0.0 Y 0.0 N N 1230 7693 ENSG00000078747 ENSG00000125971 + - 20 20 33099198 33128762 utr3p upstream ITCH DYNLRB1 32951041 33104214 + + 0.0 33095713 33102984 + - N 4.54446062035256 - N SA470 1 0.0 1.0 1 0 3 N Y 0.0 0.0 13 1.0623954218296 0.8615767750203471 1.0623954218296 0.8615767750203471 4 1.69230769230769 - 0.989027350018282 HCT116-unstranded 10.0 1134511 GCGGCGGCCGCGGGCGGCGGGCGGCGGAGGTGCGGGGCCTGCTCCCGCCGGCACCATGGCCAAGACCGTGGCCTATTTCTACGACCCCGACGTGGGCAACTTCCACTACGGAGCTGGACACCCTATGAAGCCCCATCGCCTGGCATTGACCCATAGCCTGGTCCTGCATTACGGTCTCTATAAGAAGATGATC|CTGGAGAGATTTACCAGCATGAGAATTAAGAAGGAGAAGGAAAAGCCCAATTCTGCTCATAGAAATTCTTCTGCATCATATGGGGATGATCCCACAGCACAGTCATTGCAAGATGTTTCAGATGAACAAGTGCTGGTTCTCTTTGAACAGATGCTGCTGGATATGAACCTGAATGAGGAGAAACAGCAACCTTTGAGGGAGAAGGACATCAT 10 0.934655590586367 0.653041673386074 0.898692241978433 Y Y 3.84271856484967 3.26501305929329 3.26501305929329 0 0.9948314147885352 0.0 Y 0.0 N Y 5988 31260 ENSG00000171720 ENSG00000131504 + - 5 5 141016437 140998622 coding coding HDAC3 DIAPH1 141000443 140894583 - - 0.0 141016115 140966764 - + N - - N SA470 1 0.13917525773195902 1.0 1 0 3 Y Y 0.13917525773195902 0.0 15 1.25673604777404 1.49642281977218 1.49642281977218 1.25673604777404 4 - - 0.984179141011732 HCT116-unstranded 10.0 1135100 GGGTGCTCTACATTGACATTGACATCCACCATGGTGACGGGGTTCAAGAAGCTTTCTACCTCACTGACCGGGTCATGACGGTGTCCTTCCACAAATACGGAAATTACTTCTTCCCTGGCACAG|CTGGAGAGATTTACCAGCATGAGAATTAAGAAGGAGAAGGAAAAGCCCAATTCTGCTCATAGAAATTCTTCTGCATCATATGGGGATGATCCCACAGCACAGTCATTGCAAGATGTTTCAGATGAACAAGTGCTGGTTCTCTTTGAACAGATGCTGCT 3 0.0913851900028792 0.533549929188257 0.8645458119104029 Y Y 3.52614339427891 3.26501305929329 3.26501305929329 0 0.975696246324165 0.0 Y 0.0 N Y 5988 31260 ENSG00000171720 ENSG00000131504 + - 5 5 141016437 140998622 coding coding HDAC3 DIAPH1 141000443 140894583 - - 0.0 141008740 140966764 - + N - - N SA470 1 0.0 1.0 1 0 3 N Y 0.0 0.0 6 0.479373543996284 1.04296135923516 1.04296135923516 0.479373543996284 4 - - 0.9851560114863308 HCT116-unstranded 10.0 1136825 AGTATCTGGACCAGATCCGCCAGACAATCTTTGAAAACCTGAAGATGCTGAACCATGCACCTAGTGTCCAGATTCATGACGTGCCTGCAGACCTCCTGACCTATGACAGGACTGATGAGGCTGATGCAGAGGAGAGGGGTCCTGAGGAGAACTATAGCAG|CTGGAGAGATTTACCAGCATGAGAATTAAGAAGGAGAAGGAAAAGCCCAATTCTGCTCATAGAAATTCTTCTGCATCATATGGGGATGATCCCACAGCACAGTCATTGCAAGATGTTTCAGATGAACAAGTGCTGGTTCTCTTTGAACAGATGCTG 4 0.5910649482894829 0.659325059089922 0.885586518730043 Y Y 3.37651345789834 3.26501305929329 3.26501305929329 0 0.993609965218798 0.0 Y 0.0 N Y 5988 31260 ENSG00000171720 ENSG00000131504 + - 5 5 141016437 140998622 coding coding HDAC3 DIAPH1 141000443 140894583 - - 0.0 141004775 140966764 - + N - - N SA470 1 0.0 1.0 1 0 3 N Y 0.0 0.0 9 0.900444900209235 0.984659171451826 0.984659171451826 0.900444900209235 4 - - 0.9870319479878652 HCT116-unstranded 10.0 4127 TGACAAGCTTTTTGTAATTGATGCTTTGTATTCAGATAATATAAGCAAGGAAAACTGTGTTTTCAGAAGCTCACTGATTGGCATAGTTTGTGGTGTTTTCTATCCCAGTTCTTTGGCTTTTACTAAAAATGGACGCCTGGCAACCAA|GAATCTACTTGAAAATGGATCGGTTTATGTTGGATTAAATGCTGCTCTTTGTGGCCTCATAGCAAACAGTCTTTTTCGACGCATCTTGAATGTGACAAAGGCTCGCATAGCTGCTGGCTTACCAATGGCAGGGATACCTTTTCTTACAACAGACTTAACTTACAGATGTTTTGTAAGTTTTCCTTT 36 0.0973725519886496 0.506604265135054 0.7642047842504001 Y Y 3.48639814491089 3.2629469197535097 3.2629469197535097 0 0.0 0.00299401197604809 Y 0.00299401197604809 N Y 1609 909 ENSG00000171204 ENSG00000171202 + - 11 11 85347580 85367591 coding coding TMEM126B TMEM126A 85339629 85359011 + + 0.0 85346822 85365107 + - N - - N SA470 2 0.0 1.04 1 1 3 Y Y 0.0 0.0 25 0.984659171451826 1.3862964650703302 1.3862964650703302 0.984659171451826 4 - - 0.9788901115617892 HCT116-unstranded 10.0 4123 GGCAAGTCACATGAGCCACCAAAATGGTGGTGTTCGGGTATGAGGCTGGGACTAAGCCAAGGGATTCAGGTGTGGTGCCGGTGGGAACTGAGGAAGCGCCCA|AGGTGATTTGGATTGTGAAACCTGTACCATAACACGGAGTGGACTGACTGGTCTTGTTATTGGTGGTCTATACCCTGTTTTCTTGGCTATACCTGTAAATGGTGGTCTAGCAGCCAGGTATCAATCAGCTCTGTTACCACACAAAGGGAACATCTTAAGTTACTGGATTAGAACTTCTAAG 5 0.715601431093687 0.279770003537127 0.0454893655202771 Y Y 3.5597647729410897 3.5497555543369104 3.5497555543369104 0 0.0 0.0 Y 0.0 N Y 1609 909 ENSG00000171204 ENSG00000171202 + - 11 11 85347580 85367591 coding coding TMEM126B TMEM126A 85339629 85359011 + + 0.0 85339732 85366638 + - N - - N SA470 1 0.0 1.0 1 0 3 N Y 0.0 0.0 15 0.466417502266654 0.984659171451826 0.984659171451826 0.466417502266654 4 - - 0.985950059815252 HCT116-unstranded 10.0 1035588 TGTAGGATCCAGTCTAGAAGGTGCAGTAACCCCTCAGACATCAGCATGGCTGCCCCCGACTTCAGCAGAACATGATCATTCTCTGTCATGTGTGGTAACTCCTCAAGATGGGGAGACTTCAGCACAAATGATAGAAGAAAATTTGAACTGCCTTGGCCATTTAAGCACTATTATTCATGAGGCAAATGAGGAACAGGGCAATAGTATGAT|GCACAAGTTGACCCCGGAATATCTGGAGCTCAAAAAGTACCAGGCCATTGCTTCTAACAGTAAGATCTATTTTGGCAGCAACATCCCTAACATGTTCGTGGACTCCTCATGTGCTTTGAAATATTCAGATATTAGGACTGGAAGAGAAAGCTCACTCCCCTCTAAGGAGGCTCTTGAACCCTCTGGAGAGAACGTCATCCAAAACAAAGAGAGCACAGGTTGATGCAAG 9 0.405481854431177 0.334086591641013 0.54748313140122 Y Y 3.41103992525442 3.72448538129198 3.41103992525442 0 0.0 0.0 Y 0.0 N Y 3599 10707 ENSG00000213341 ENSG00000107566 + - 10 10 101989376 101948091 coding coding CHUK ERLIN1 101948055 101909851 - - 0.0 101950626 101912109 - + N - - N SA470 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 6 1.3215162564221898 1.30208219382774 1.3215162564221898 1.30208219382774 4 - - 0.945569479751566 HCT116-unstranded 10.0 1036643 GACTTCAGCAGAACATGATCATTCTCTGTCATGTGTGGTAACTCCTCAAGATGGGGAGACTTCAGCACAAATGATAGAAGAAAATTTGAACTGCCTTGGCCATTTAAGCACTATTATTCATGAGGCAAATGAGGAACAGGGCAATAGTATGATG|CACTTTATTTGCAACAAGTTTAGTTGCTCCTGAAGGGCAGGATCTCTGCCGGAAGCAAGTGCGTGCCACACAGTGGGGCTCCGCATACACTGCAAAAGGACAAATAAACCGAACAGCTACCGTTTGAGAGTGAGCGAGTGGGTTCTCTGCACAAGAACAAACCAACCAGTCCCTTGTCCGAAAGGGCGTCTCCTTTTCTCTGCTTCGCTGCTCACTCCAGACTGCGGGCTGTCCTCTTCC 25 0.922583297913888 0.573956117384968 0.25431984193069 Y Y 3.3791139637714305 3.48639814491089 3.3791139637714305 0 0.0 0.0 Y 0.0 N N 3599 10707 ENSG00000213341 ENSG00000107566 + - 10 10 101989376 101948091 coding utr5p CHUK ERLIN1 101948055 101909851 - - 0.0 101950626 101946199 - + N - 27.6197425020883 N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 22 0.984659171451826 1.41220854852959 1.41220854852959 0.984659171451826 4 - 1.5 0.9775239364318872 HCT116-unstranded 10.0 1035586 AGTCTAGAAGGTGCAGTAACCCCTCAGACATCAGCATGGCTGCCCCCGACTTCAGCAGAACATGATCATTCTCTGTCATGTGTGGTAACTCCTCAAGATGGGGAGACTTCAGCACAAATGATAGAAGAAAATTTGAACTGCCTTGGCCATTTAAGCACTATTATTCATGAGGCAAATGAGGAACAGGGCAATAGTATGAT|GCACAAGTTGACCCCGGAATATCTGGAGCTCAAAAAGTACCAGGCCATTGCTTCTAACAGTAAGATCTATTTTGGCAGCAACATCCCTAACATGTTCGTGGACTCCTCATGTGCTTTGAAATATTCAGATATTAGGACTGGAAGAGAAAGCTCACTCCCCTCTAAGGAGGCTC 9 0.0165760153492856 0.334086591641013 0.54748313140122 Y Y 3.41103992525442 3.72448538129198 3.41103992525442 0 0.0 0.0 Y 0.0 N Y 3599 10707 ENSG00000213341 ENSG00000107566 + - 10 10 101989376 101948091 coding coding CHUK ERLIN1 101948055 101909851 - - 0.0 101950626 101912109 - + N - - N SA470 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 10 1.26969208950367 1.48346677804255 1.48346677804255 1.26969208950367 4 - - 0.91055828956839 HCT116-unstranded 10.0 384045 GACTATCTAATTGGAGACCTTCAGGCAGCAGTGGTCCTGGCCAGGCAGGCCAGCCAGGAGCTGGGACGATCCTTGCAGGAACCTCAGGATTACAGCAGGTGCAGATGGCAGGAGCTCCAAGCCAGCAGCAGCCAATGCTCAGTGGGGTACAAATGGCTCAGGCAGGTCAACCAGGGAAAATGCCAAGTGGAATAAAAACCAACATCAAGTCGGCTTCCATGCATCCCTACCAGCG|AGTCCTTAGCCAGGATGGAGGCTGTTGTGAACTTGTACCAAGAGGTGATGAAGCACGCAGATCCCCGGATCCAGGGCTACCCTCTGATGGGGTCCCCCTTGCTAATGACCTCCATTCTCCTGACCTACGTGTACTT 10 1.0 0.5934589240161171 0.46826488583606 Y Y 3.56488607910057 3.762733552573681 3.56488607910057 0 0.992666824794434 0.0 Y 0.992666824794434 N Y 5115 4200 ENSG00000159479 ENSG00000066322 + - 1 1 43855479 43833697 coding utr5p MED8 ELOVL1 43849588 43829068 - - 0.0 43850717 43831294 - + N - - N SA470 1 0.0 1.0 1 0 2 N Y 0.0 0.0 9 1.30856021469256 0.8097526081018299 1.30856021469256 0.8097526081018299 4 - - 0.993788098359466 HCT116-unstranded CGHSA0334 10.0 733323 TGGCACCTTCCTCAGTGCTGAACTGGCCTCCAACCCCCAGGGCCAGGGAGCAGCAGTACTTCCAGAGGACCTTGGCAGGAACTGTGCCCGGCTGCTGCTGGAGGAAATCTACAGGGGTGGATGCGTAGACTCGACCAACCAAAGCCTGGCGCTACTACTCATGACCCTTGGACAGCAGGATGTTTCCAAAGTCCTGCTAGGCCCTCTCTCTCCCTACAC|GTTGCTTTCCATCTCTGGGAAATCTACTCTTACCAGAACTAGAGACCGTTTCCAAGGAAAAAAGGAGAAAAAAAGAAGATGCCACTTTGAAAGACATCGTTGCTTCATCCTTCAAATAGCCACATGGGGAATATGCAGCAATTTCCTTATTAACAGGTGTTCAAAGCATCTTGTGTTTCTCAACACCCAGACTGGAACTCTCCTGGGAACTAGA 31 0.6034137014841899 0.819796217913778 0.15851276710049805 Y Y 3.27763636413971 3.47445076784292 3.27763636413971 0 0.0 0.0 Y 0.0 N N 1741 316 ENSG00000120158 ENSG00000243754 + - 9 9 4861064 4885917 coding downstream RCL1 RP11-125K10.4 4792869 4860454 + + 0.0 4849550 4905157 + - N - - N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 33 1.39925250679996 1.40573052766478 1.40573052766478 1.39925250679996 4 - - 0.951787572088404 HCT116-unstranded 10.0 106846 CAGCAGTCCCTGGGCACCAGGAAGGAACTGCAGAAGGAGCTCCAGGAGCGTCTTTCTCAGGAATGCCCGATCAAGGAGGTGGTGCTTTATGTCAAAGAAGAAATGAAGAGGAATGATCTTCCAGAAACAGCAGTGATTGGTCTTCTGTGGACATGTATAATGAACGCTGTTGAGTGGAACAAGAAGGAAGAACTTGTTGCAGAGCAGGCTCTGAAGCACCTGAAG|TTGGTTAGTCTGCTGCTAATTGGAATTGCTGCGTGGGGCATTGGCTTCGGGCTGATTTCCAGTCTCCGAGTGGTCGGCGTGGTCATTGCAGTGGGCATCTTCTTGTTCCTGATTGCTTTAGTGGGTCTGATTGGAGCTGTAAAACATCATCAGGTGTTGCTATTTTTTTATATGATTATTCTGTTACTT 101 1.0 0.902832447642269 0.52628462146571 Y Y 3.4937534244795 3.4571608175836404 3.4571608175836404 0 0.0 0.0 Y 0.0 N Y 14058 2873 ENSG00000136261 ENSG00000106537 + - 7 7 16746148 16824161 coding coding BZW2 TSPAN13 16685756 16793160 + + 0.0 16736686 16815836 + - N - - N SA470 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 128 1.46403271544811 1.30856021469256 1.46403271544811 1.30856021469256 4 - - 0.9942315411823952 HCT116-unstranded 10.0 1136718 GCAGGCGAGATTACGAGGCGAGGCTCGCGCGCCCGCCCCCGCCCTGGCCCCCAGTGCCCACCCGGTCGGCCCGGCACAGCCATGATCAAGGCGATCCTAATCTTCAACAACCACGGGAAGCCGCGGCTCTCCAAGTTCTACCAGCCCTAC|GGCCCTGTTAGCGTCCCAGCTGGAACCAACATTTGCCAGGTATGTTTTCCCTTGTTTTGATGAGCCAGCTCTGAAGGCAACTTTTAATATTACAATGATTCATCATCCAAGTTATGTGGCCCTTTCCAACATGCCAAAGCTAGGTAAGTAATGCTTTCTGTCTATATCTAGCTGTCTATCTATATAAGCT 5 0.784592781001492 0.9675870890007908 0.0733575756840224 Y Y 3.5429693362217702 3.64127736852694 3.5429693362217702 2 0.0 0.0 Y 0.0 N Y 17173 1221 ENSG00000177879 ENSG00000172901 + - 5 5 115249778 115394680 coding coding AP3S1 LVRN 115177178 115298151 + + 0.0 115177803 115318984 + - N - 8.21150471326836 N SA470 2 0.0 1.5 1 3 4 N Y 0.0 0.0 6 0.803274587237016 1.0170492757759 1.0170492757759 0.803274587237016 4 - 0.666666666666667 0.9323623912350292 HCT116-unstranded 10.0 1132705 CGCGCGGTCGCGTGCGGGAGGGGGCGGGTGGGGAAGGATCGCAGGCGAGATTACGAGGCGAGGCTCGCGCGCCCGCCCCCGCCCTGGCCCCCAGTGCCCACCCGGTCGGCCCGGCACAGCCATGATCAAGGCGATCCTAATCTTCAACAACCACGGGAAGCCGCGGCTCTCCAAGTTCTACCAGCCCTAC|TGCCTCCTGATGCTTGCAATCTCATTCCCAATTCACCAGCGTGCGTGAATGCAGACTCCAGATCCAGCGCAGACGCCAAGAATTCGCTCAGGGGCACCAGCTAAATAGCAAACAGATGCCATGTCAAACATGTGAAAGCCTCAGCGACTAGGGTACCGCCGGGAAAACCAGTTCCAGCCCAGGAATTTCTGGGTGGAAACACTGGCCGCCGAATTGTTTTATTCTCT 84 1.0 0.6935464313920889 0.7021134669259129 Y Y 3.5429693362217702 3.35566963758278 3.35566963758278 0 0.0 0.0 Y 0.0 N N 17173 1221 ENSG00000177879 ENSG00000172901 + - 5 5 115249778 115394680 coding upstream AP3S1 LVRN 115177178 115298151 + + 0.0 115177803 115297135 + - N - - N SA470 2 0.0 1.44155844155844 1 34 4 N Y 0.0 0.0 77 1.2373019851796 1.502900840637 1.502900840637 1.2373019851796 4 - - 0.950091080360378 HCT116-unstranded 10.0 1134134 TCTGTTAAGTATCCATGGGTCTTTGCTGCAGCTCATTGCATAAGCAAGTTGAATCTTTTCTTCTTTGTTTGTTGTATTAGTGTAAGTATTTAACAAGATGTCCCACTCTTTATCACTTCCCAAGGCAATGCCATAACATAAAACCACATCTTTAATTGGATAAGGTATT|GTAGGGCTGGTAGAACTTGGAGAGCCGCGGCTTCCCGTGGTTGTTGAAGATTAGGATCGCCTTGATCATGGCTGTGCCGGGCCGACCGGGTGGGCACTGGGGGCCAGGGCGGGGGCGGGCGCGCGAGCCTCGCCTCGTAATCTCGC 2 0.125806526173544 0.688922791175345 0.9096461405731792 Y Y 3.46977054206091 3.5429693362217702 3.46977054206091 0 0.0 0.0 Y 0.0 N Y 1221 17173 ENSG00000172901 ENSG00000177879 - + 5 5 115394680 115249778 coding coding LVRN AP3S1 115298151 115177178 + + 0.0 115350949 115177803 - + N - 0.250617441969098 N SA470 2 0.0 1.7142857142857095 1 5 4 N Y 0.0 0.0 7 1.2373019851796 0.932835004533309 1.2373019851796 0.932835004533309 4 - 258.285714285714 0.910263592240021 HCT116-unstranded 10.0 1098470 GGCTACCGGGACGCGGCGTTGGCGGCCGTGCGGCGCCAGGCGGCGCGCTGGGAGCTGCCGCTCACGGTCGTGGCCTACGAAGACCTCTTTGGGGGCTGGACGATGGACGCCGTGGCCCGCAGCACAGCCGGCTCCGGCCGCAGCCGCTCCTGCTGCACCTTCTGTGGAGTGCTGCGGCGCCGGGCGCTGGAGGAAGGGGCGCGCCGCGTGGGAGCCACGCACATCGTGACAG|CCAGGTACCCCGCCTCTCTGCAATGCGTGAACATCAACATCTCCCCGGATGAGGTGTGCCAGAAGGCCTATCCTAGAACCATCACGCCTGGCATGGTCTGTGCAGGAGTTCCCCAGGGCGGGAAGGACTCTTGTCAGGGTGACTCTGGGGGACCCCTGGTGTGCAGAGGACAGCTCCAGGGCCTCGTGTCTTGGGGAATGGAG 33 0.658977220146951 0.762543097222631 0.592302282248299 Y Y 3.37232774565629 3.69106234172268 3.37232774565629 1 0.0 0.0 Y 0.0 N Y 1759 254 ENSG00000142544 ENSG00000129437 + - 19 19 51611647 51587502 coding coding CTU1 KLK14 51600863 51580574 - - 0.0 51607319 51582208 - + N - - N SA470 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 31 1.48994479890737 1.4381206319888502 1.48994479890737 1.4381206319888502 4 - - 0.9824933410498968 HCT116-unstranded 10.0 947606 GGGGTGTGGCCATGAATCCTGTGGAGCATCCTTTTGGAGGTGGCAACCACCAGCACATCGGCAAGCCCTCCACCATCCGCAGAGATGCCCCTGCTGGCCGCAAAGTGGGTCTCATTGCTGCCCGCCGGACTGGACGTCTCCGGGGAACCAAGACTGTGCAGGAGAAAGAGAACTAGTGCTGAGGGCCTCAATAAAG|CCAAATAGTTGCATCACATGTATCTAATCCGAGAGTCTCATGCTTCTGGTAGCTCCTCAGTGACCAGCTCCTGCTCACTGCCCTCAGAAAGCCCAACCCTCAGGCAATGGCGGCCTTGTTCCTGTCTGCCCCACCCCAGGCCGAGGTGACCTTCGAGGACGTGGCTGTGTACCTCTCCCGGGAGGAATGGGGCCGCCTGGGCCCTGCTCAGAGGGGCCTCTACAGGGACGTGAT 174 1.0 0.9891511768314591 0.5095446572921211 Y Y 3.35253057547976 3.63465898428114 3.35253057547976 2 0.0 0.00232018561484904 Y 0.00232018561484904 N Y 257121 10851 ENSG00000161016 ENSG00000196378 + - 8 8 146017972 146012730 utr3p utr5p RPL8 ZNF34 146015150 145997611 - - 0.0 146015170 146005665 - + N - - N SA470 4 0.0 2.3756345177665 1 168 3 Y Y 0.0 0.0 197 1.2826481312333 1.52881292409626 1.52881292409626 1.2826481312333 4 - - 0.950482026019648 HCT116-unstranded 10.0 951094 GGGGTGTGGCCATGAATCCTGTGGAGCATCCTTTTGGAGGTGGCAACCACCAGCACATCGGCAAGCCCTCCACCATCCGCAGAGATGCCCCTGCTGGCCGCAAAGTGGGTCTCATTGCTGCCCGCCGGACTGGACGTCTCCGGGGAACCAAGACTGTGCAGGAGAAAGAGAACTAGTGCTGAGGGCCTCAATAAA|GCCAAATAGTTGCATCACATGTATCTAATCCGAGAGTCTCATGCTTCTGGTAGCTCCTCAGTGACCAGCTCCTGCTCACTGCCCTCAGAAAGCCCAACCCTCAGGCAATGGCGGCCTTGTTCCTGTCTGCCCCACCCCAGGCCGAGGTGACCTTCGAGGACGTGGCTGTGTACCTCTCCCGGGAGGAATGGGGCCGCCTGGGCCCTGCTCAGAGGGGCCTCTACAGGGACGTGATGCTGGAGACCTACGGGAACCTAGTCTCACTGGGAGTAGGAC 157 0.00017722096302298502 0.866534415845558 0.5658538398501329 Y Y 3.40744620240479 3.6759318169590096 3.40744620240479 1 0.0 0.0 Y 0.0 N Y 257121 10851 ENSG00000161016 ENSG00000196378 + - 8 8 146017972 146012730 utr3p utr5p RPL8 ZNF34 146015150 145997611 - - 0.0 146015170 146005665 - + N - - N SA470 4 0.0 2.22222222222222 1 8 3 Y Y 0.0 0.0 9 1.13365365134256 1.10126354701849 1.13365365134256 1.10126354701849 4 - - 0.932370145191328 HCT116-unstranded 10.0 220947 AAACTGTCTCTTTTGTATTTCCCCACCCAGAAAAACAGCCTTGACATATGCTGTTGTGTCCAAAATTGGTGGATTCCTGACTTCACTGACCTCAAGAAGGAAGCCACAGACCCTCACG|CTGTGAAGCCAGCCAAGCCCTGCCAGCTTCCCTAGCTCTGGGGGAGGAGGAGGAGGCCTCTTGCTCAGGGGAGCTGTCACCAGCCTGCAAGCCCACTGTCCTAGCCACACTGTGAAACTGGAGGTGGCACTTCCCACAGCAGCTTCAGCGGAACCCAGGGACGCCACCAGAGGCATGAAGTGTGTGAAACTCCGGCCCGAGGGGAGAGCTGAGGAGGCGGGCAGAC 72 1.0 0.777510791249379 0.7254326403111958 N Y 3.38080938095063 3.1940041958516003 3.1940041958516003 0 0.0 0.0 Y 0.0 N N 345 15389 ENSG00000070526 ENSG00000182534 - + 17 17 74639920 74707098 downstream intron ST6GALNAC1 MXRA7 74620843 74668633 - - 0.0 74610087 74677857 + - N - 1.42575374840904 N SA470 1 0.71875 1.0 1 0 3 N N 0.71875 0.0 37 0.6218900030222061 1.23082396431478 1.23082396431478 0.6218900030222061 4 - 65.972972972973 0.993381186507095 HCT116-unstranded 10.0 941824 GGCGAAGGTGGAGCAGGTCCTGAGCCTCGAGCCGCAGCACGAGCTCAAATTCCGAGGTCCCTTCACCGATGTTGTCACCACCAACCTAAAGCTTGGCAACCCGACAGACCGAAATGTGTGTTTTAAGGTGAAGACTACAGCACCACGTAGGTACTGTGTGAGGCCCAACAGCGGAATCATCGATGCAGGGGCCTCAATTAATGTATCT|GATGTCTTGAACAAGTCAGCAAAGAAAAACAGTTCCGCCTTTGGAATGTATGAAAATGAAGACCGTTGCAGGAGGTCTTGAGCCACAGAGCTGGCTCCAGAGGCATTGGGAGGAGAAACGCGGCAGGCCTGGCTCACTCATTATATTTCAAGATCTATCCCAGCTTGTCACAACATGGACTGTGTAACTGAGACGATTCGCGGTTGGTGTTCCCAT 19 0.6473492527782629 0.681578409614325 0.566238431537313 N Y 3.6684832514345698 3.49744043328497 3.49744043328497 6 0.995203619909502 0.0 Y 0.007149321266968429 N Y 2692 262 ENSG00000124164 ENSG00000231290 + - 20 20 57026157 57194944 coding intron VAPB APCDD1L-AS1 56964178 57090435 + + 0.0 56993419 57193796 + - N - 0.0399012992568845 N SA470 1 0.0 1.0 1 0 1 N N 0.0 0.0 13 1.33447229815182 1.35390636074626 1.35390636074626 1.33447229815182 4 - 0.0769230769230769 0.908629799314306 HCT116-unstranded 10.0 109043 TGCCTCGGCCAGTATCTCCAGAGCCTCCTCCAGGCGGTGCCGGCACTCCACAGGTACAGGCTGCCCAGCTCCCAGGCTCTCTGTTAACCAGCTTATGTCCAGCAGAGCTGGGGGGGTGCAACCCGGGGGAGCAGCTGCCATCCTGCGCTCCTGCCAGCTGACGGCCTCCTCTGCTGAGGTCTCTTCCATCACAACATGTGTCGCTTCGGAGC|CCAGTGCTGCTGGGCCCGGTTCTCCAGGAAGGGTCTCATTTGGATGAGGCGGGTGGCATAAATGTGGGCATACTGCCGGCTAAAGCTGCGCTCTCCTAGCCGGAAGGGTTGTGAGGAGTTGGTGTAGGTTGCCACTGGCACCCGGGCAAAGGTGGCATTGTTGGCTGATGGTGGGGACAGTAGAGTGTGGGCCCTCTGGGCAGCCTGCTCAGAAAACAT 24 0.8855880938962231 0.9930738967687208 0.393342390830295 N Y 3.7527243339695 3.48064499656564 3.48064499656564 0 0.0 0.00231481481481488 Y 0.00231481481481488 N Y 1149 27155 ENSG00000122678 ENSG00000106628 - + 7 7 44122139 44163957 coding coding POLM POLD2 44111846 44154286 - - 0.0 44120515 44161433 + - N - 2.516004939966 N SA470 1 0.0 1.0 1 0 1 Y N 0.0 0.0 21 1.35390636074626 1.36686240247589 1.36686240247589 1.35390636074626 4 - 195.809523809524 0.991906014303097 HCT116-unstranded 10.0 796335 ACCGAGCTGATGCCTTGCAGGCAGGAGCATCACAATTTGAGAGCAGTGCTGCCAAGCTAAAGAGGAAGTATTGGTGGAAAAACTGCAAGATGATGATCATGCTGGGAGCCATCTGTGCCATCATCGTGGTAGTTATTGTAAG|TAGACCCAGTGTAATCACAAGCATCCTTGTAAGTGGCAAAGAGGCAGAGGAGACAGCGCCAGAGAGGCAGCTGCATGAGAAGGATCAAGATGTTGCTGACTTTGAAGTTGGAAGAAGAAGGCCATGAGCCTCAGTATGTGGGCGGCTTCTAGAAGCTGGAAGGGGCAAGGAGATGGATTTGACCCTTCAGCC 5 0.989007681617382 0.29448634389449896 0.438938401957313 Y Y 3.65657572715995 3.60103760561896 3.60103760561896 2 0.992978768131175 0.0 Y 0.0029850746268655893 N Y 442 108 ENSG00000139190 ENSG00000215039 + - 12 12 6580153 6560733 coding intron VAMP1 CD27-AS1 6571403 6548167 - - 0.0 6574056 6548842 - + N - 1.12720871495858 N SA470 1 1.0 1.0 1 0 1 N Y 0.0 1.0 11 0.8745328167499771 1.12717563047775 1.12717563047775 0.8745328167499771 4 - 0.272727272727273 0.977354756142792 HCT116-unstranded 10.0 655037 AGAGAAGAACTTTGGCTTTAGCCTTCAAGACGCACTGAGCAGGGCTCGGGAGCGAAGGCTGCTAGAGGGCTATGAGATCTATGTGACCCCTGGAGTCCAGCCACCACCACCTCAGATGGGAGAGATTATTAGCTGCTGTGGAGGCACATACCTACCCAGCATGCCTCGGTCCTATAAG|ATGGGAAAACTAGACGAGCTGAGATTCAACCCACGTGAGCGGCTGCAGAGCCGCTACCCTTAACAGCTCTCTCTCGGGATTCTAACATTCCCTTCTGTGACGGAGAGACAGCAGGCCGGGACACGCATCCCAGGACGGATCCACAGCTGGATGGGGAAGGCTGCGCCAGGCGGGCCGGAAGCCTGGCGGTGGCGTGCAGGAGCCCCGCCCTCCTGGGCTGGATTCAG 10 1.0 0.778740042341434 0.8877042795633661 N Y 3.700409212917549 3.57063922744582 3.57063922744582 0 0.994395859854984 0.0 Y 0.120149997232523 N Y 7423 2310 ENSG00000137337 ENSG00000137404 + - 6 6 30685666 30659197 coding utr5p MDC1 NRM 30667584 30655824 - - 0.0 30670330 30659058 - + N - - N SA470 1 0.00497512437810945 1.0 1 0 1 N N 0.0 0.00497512437810945 11 1.09478552615367 1.30208219382774 1.30208219382774 1.09478552615367 4 - - 0.991157737720567 HCT116-unstranded 10.0 650866 AAGTTTTTGACTAAAGGCCAGAATGCATTGGTAGAGCTACAGACACAAAGACCAATAGCTCTTGAGCTATATAAAGACTTTAAAGAGCTGGGGAGGTTCATGCTACGTTACGGTGGTTCTACAATAGCTGCTGGTGTTGTCACT|GAGATCGAAGCCGCGGTCAAGGCCGCCAGAGAAGCCTTTCCCAGCTGGTCATCCCGCAGCCCCCAGGAGCGCTCACGGGTCCTGAACCAGGTGGCGGATTTGCTGGAGCAGTCCCTGGAGGAGTTTGCCCAGGCCGAGTCTAAAGACCAAGGGAAAACCTTAGCACTGGCAAGAACCATGGACATTCCCCGGTCTGTGCAGAACTTCAGGTTCTTCGCTTCCTCCAGCCTGCACCACACGTCAGAGTGCACGCAGATGGACC 23 0.7162593119483129 0.9478424204883572 0.32601777600466697 Y Y 3.60888739872753 3.4001654707496898 3.4001654707496898 0 0.979217854217854 0.0 Y 0.0 N Y 7544 1173 ENSG00000112339 ENSG00000118514 + - 6 6 135424194 135271260 coding coding HBS1L ALDH8A1 135281516 135238528 - - 0.0 135287467 135265104 - + N - - N SA470 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 22 0.997615213181455 1.52881292409626 1.52881292409626 0.997615213181455 4 - - 0.957811958162314 HCT116-unstranded 10.0 382231 TCTTCCAACAGTGACAGTAACTCAGGAACAAGTTGATATGGGTTTAGAGTGTCCAGTATGCAAAGAAGATTACACAGTTGAAGAGGAAGTCCGGCAGTTACCTTGCAATCACTTCTTTCACAGCAGTTGTATTGTGCCGTGGCTAGAACT|GAAATGACCTCCACCTTCAACCCCCGAGAATGTAAACTGTCCAAGCAAGAAGGGCAAAACTATGGCTTCTTCCTGCGAATTGAGAAGGACACCGAGGGCCACCTGGTCCGGGTGGTTGAGAAGTGTAGCCCAGCAGAGAAGGCTGGCCTTCAA 9 0.5593523011857979 0.850018021168583 0.6397941058474089 N Y 3.73912139251568 3.38127338926705 3.38127338926705 0 0.0 0.0 Y 0.0 N Y 912 343 ENSG00000121848 ENSG00000174827 + - 1 1 145690661 145764074 coding utr5p RNF115 PDZK1 145611036 145726918 + + 0.0 145687091 145747042 + - N - - N SA470 1 0.0 1.0 1 0 2 N N 0.0 0.0 7 0.8097526081018299 0.99113719231664 0.99113719231664 0.8097526081018299 4 - - 0.994848257334812 HCT116-unstranded 10.0 382232 GGTTGCCATTGGGTCGGAGATACAGATCTCGAGGAAGTTCTCGTCCTGACAGATCTCCAGCTATTGAAGGAATACTACAACACATCTTTGCAGGATTCTTTGCAAATTCTGCCATTCCTGGATCTCCACACCCTTTTTCCT|GAAATGACCTCCACCTTCAACCCCCGAGAATGTAAACTGTCCAAGCAAGAAGGGCAAAACTATGGCTTCTTCCTGCGAATTGAGAAGGACACCGAGGGCCACCTGGTCCGGGTGGTTGAGAAGTGTAGCCCAGCAGAGAA 8 0.154995630409103 0.6688949672711421 0.8357923778762769 N Y 3.1642376598642303 3.38127338926705 3.1642376598642303 10 0.0 0.0035460992907800897 Y 0.0035460992907800897 N Y 912 343 ENSG00000121848 ENSG00000174827 + - 1 1 145690661 145764074 coding utr5p RNF115 PDZK1 145611036 145726918 + + 0.0 145682094 145747042 + - N - - N SA470 1 0.0 1.0 1 0 2 N N 0.0 0.0 6 0.855098754155533 0.595977919562947 0.855098754155533 0.595977919562947 4 - - 0.9808714620640072 HCT116-unstranded 10.0 693457 GGGCGGGACGAGGAGAAGCCAAACGTAAAGACACCAGGAGTTTCTCGGGCCCAGCTGTGGCTGCTGCCGGGGAGCCCCAAGCCTTGGCGGGTCCTTGCGGCGAATAGGAGTCTGGTCAGGCGTCAGGCTAGTCCGACGAAGAGTGGAGAATTTCAAGATTGTGGAGTTGGACTGAATGCTGCACAGTTCAAACAGCTGCTTATTTCGGCTGTGAAGGACCTGTTTGGGGAG|GAATATATTATTCGAGTGCAAAGAGGAATTTCTGTGGAAAACAGCTGGCAGATTGTTAGAAGATACAGTGACTTTGATTTGCTTAACAACAGCTTACAGATTGCAGGCCTAAGTCTACCTCTTCCTCCCAAAAAATTGATTGGTAACATGGATCGTGAATTCATAGCTGAAAGGCAGAAAGGTCTTCAGAACTATCTCAACGTGATCACAACAAATCATATCTTGTCTAATTGTGAGCTGGTTA 18 9.67748531727279e-07 0.660578180756217 0.8691120842301621 Y Y 3.58064844605001 3.43681151080804 3.43681151080804 0 0.0 0.0 Y 0.0 N Y 364 2336 ENSG00000163684 ENSG00000168297 + - 3 3 58305816 58411748 coding coding RPP14 PXK 58291974 58318607 + + 0.0 58296318 58351601 + - N - - N SA470 1 0.0 1.0 1 0 4 Y Y 0.0 0.0 17 0.8097526081018299 1.3862964650703302 1.3862964650703302 0.8097526081018299 4 - - 0.988012015966468 HCT116-unstranded 10.0 691614 GCGGGACGAGGAGAAGCCAAACGTAAAGACACCAGGAGTTTCTCGGGCCCAGCTGTGGCTGCTGCCGGGGAGCCCCAAGCCTTGGCGGGTCCTTGCGGCGAATAGGAGTCTGGTCAGGCGTCAGGCTAGTCCGACGAAGAGTGGAGAATTTCAAGATTGTGGAGTTGGACTGAATGCTGCACAGTTCAAACAGCTGCTTATTTCGGCTGTGAAGGACCTGTTTGGGG|AGGCAAAACCAAAAGACCCATTTCTAAAGAAGTACTGCAACCCTAAGAAGATTCAGGGCCTGGAACTCCAGCAAATAAAAACATATGGACGGCAAATATTAGAGGTACTGAAGTTTCTTCATGACAAGGGATTCCCTTATGGGCATCTTCACGCCTC 30 0.21026617500967493 0.700254081351953 0.581410026584216 Y Y 3.5351195431132 3.31531547396794 3.31531547396794 0 0.0 0.0 Y 0.0 N Y 364 2336 ENSG00000163684 ENSG00000168297 + - 3 3 58305816 58411748 coding coding RPP14 PXK 58291974 58318607 + + 0.0 58296318 58381385 + - N - - N SA470 1 0.0 1.0 1 0 4 Y Y 0.0 0.0 32 1.36038438161107 1.57415907014996 1.57415907014996 1.36038438161107 4 - - 0.98320457132995 HCT116-unstranded 10.0 693843 GGCCCGGGCGAGACTTCGGGACCGTGTCCTGAGCGCTCTCCATGCGCCCGGCGCGAGAGAATTTCAAGATTGTGGAGTTGGACTGAATGCTGCACAGTTCAAACAGCTGCTTATTTCGGCTGTGAAGGACCTGTTTGGGG|AGGCAAAACCAAAAGACCCATTTCTAAAGAAGTACTGCAACCCTAAGAAGATTCAGGGCCTGGAACTCCAGCAAATAAAAACATATGGACGGCAAATATTAGAGGTACTGAAGTTTCTTCATGACAAGGGATTCCCTTATGGGCATCTTCACGCCTCCAATGTGATGCTCGATGGGGACACTTGCCGGC 33 0.0995898243532328 0.9677772352338272 0.465290668627566 Y Y 3.5351195431132 3.31531547396794 3.31531547396794 0 0.0 0.0 Y 0.0 N Y 364 2336 ENSG00000163684 ENSG00000168297 + - 3 3 58305816 58411748 coding coding RPP14 PXK 58291974 58318607 + + 0.0 58296318 58381385 + - N - - N SA470 1 0.0 1.0 1 0 4 Y Y 0.0 0.0 11 1.04943938009997 1.19843385999071 1.19843385999071 1.04943938009997 4 - - 0.9894311593103108 HCT116-unstranded 10.0 692816 GTCAGGCTAGTCCGACGAAGAGTGGAGAATTTCAAGATTGTGGAGTTGGACTGAATGCTGCACAGTTCAAACAGCTGCTTATTTCGGCTGTGAAGGACCTGTTTGGGGAG|ATTGCAGGCCTAAGTCTACCTCTTCCTCCCAAAAAATTGATTGGTAACATGGATCGTGAATTCATAGCTGAAAGGCAGAAAGGTCTTCAGAACTATCTCAACGTGATCACAACAAATCATATCTTGTCTAATTGTGAGCTGGTTAAGAAGTTTTTAGAT 16 0.17522712701967802 0.652683633562152 0.5951440070824889 Y Y 3.58064844605001 3.5361526128830896 3.5361526128830896 0 0.0 0.0 Y 0.0 N Y 364 2336 ENSG00000163684 ENSG00000168297 + - 3 3 58305816 58411748 coding coding RPP14 PXK 58291974 58318607 + + 0.0 58296318 58368241 + - N - - N SA470 1 0.0 1.0 1 0 4 Y Y 0.0 0.0 6 0.8874888584796059 0.926356983668494 0.926356983668494 0.8874888584796059 4 - - 0.990039928824597 HCT116-unstranded 10.0 108802 GAAAAAGTTTTCTTTTCTGGAGTCCCAAACGAGGTGCGGGACGGAAGAGGGGGTGAAGGCCAGAGGCTCGGGGCTTCAAGACCGCTGTCTGGAGTCCCCCTTTCCAGGCCATGTCGGGGCCCACCTGGCTGCCCCCGAAGCAGCCGGAGCCCGCCAGAGCCCCTCAGGGGAGGGCGATCCCCCGCGGCACCCCGGGGCCACCACCGGCCCACGGAGCAG|GCCCCCTCAGACCGTGCCATGGGTGACAGTGATGACGAGTACGATCGAAGGCGCAGGGACAAGTTCAGAAGAGAGCGCAGCGACTACGACCGTTCCCGCGAGAGAGATGAAAGACGTCGAGGGGACGATTGGAATGACAGAGAGTGGGACCGTGGCCGTGAGCGCCGTAGTCGGGGTGAATATCGGGACTATGACCGGAATCGGCGAGAGCGCTTCTCGCCACCTCGCCACGAACTCAG 17 0.205250165223158 0.801229731214797 0.232827987574085 Y Y 2.68078245544696 3.3536034980430003 2.68078245544696 0 0.0 0.0 Y 0.0112911729887287 N Y 4428 28645 ENSG00000087077 ENSG00000087087 + - 7 7 100471076 100486285 coding coding TRIP6 SRRT 100464760 100472733 + + 0.0 100465228 100473194 + - N - - N SA470 1 0.0 1.0 1 0 4 N Y 0.0 0.0 16 1.45107667371848 1.18547781826108 1.45107667371848 1.18547781826108 4 - - 0.968278864411644 HCT116-unstranded 10.0 108803 GGCCAGCATTTCTACGCCGTGGAGAGGAGGGCATATTGCGAGGGCTGCTACGTGGCCACCCTGGAGAAATGTGCCACGTGCTCCCAGCCCATCCTGGACCGGATCCTGCGGGCTATGGGGAAGGCCTACCACCCTGGCTGCTTCACCTGCGTGGTGTGTCACCGCGGCCTCGACGGCATCCCCTTCACAGTGGATGCTACGAGCCAGATCCACTGCATTGAGGACTTTCACA|GGCCCCCTCAGACCGTGCCATGGGTGACAGTGATGACGAGTACGATCGAAGGCGCAGGGACAAGTTCAGAAGAGAGCGCAGCGACTACGACCGTTCCCGCGAGAGAGATGAAAGACGTCGAGGGGACGATTGGAATGACAGAGAGTGGGACCGTGGCCGTGAGCGCCGTAGTCGGGGTGAATATCGGGACTATGACCGGAATCGGCGAGAGCGCTTCTCGCCACCTC 19 0.963699801606043 0.8827365092088699 0.6669098144244351 Y Y 3.5859375860788303 3.3855294595259906 3.3855294595259906 0 0.0 0.0 Y 0.0 N Y 4428 28645 ENSG00000087077 ENSG00000087087 + - 7 7 100471076 100486285 coding coding TRIP6 SRRT 100464760 100472733 + + 0.0 100469343 100473194 + - N - - N SA470 1 0.0 1.0 1 0 4 N Y 0.0 0.0 21 1.4445986528536698 1.3150382355573702 1.4445986528536698 1.3150382355573702 4 - - 0.994848257334812 HCT116-unstranded 10.0 108804 GGGGAGCCTCTCAGGCCTCTGGGCCCCTCCCGGGCCCCCACTTTCCTCTCCCAGGCCGAGGTGAAGTCTGGGGGCCTGGCTATAGGAGCCAGAGAGAGCCAGGGCCAGGGGCCAAAGAGGAAGCTGCTGGGGTCTCTGGCCCTGCAGGAAGAGGAAGAGGAGGCGAGCACGGGCCCCAGG|CCCCCTCAGACCGTGCCATGGGTGACAGTGATGACGAGTACGATCGAAGGCGCAGGGACAAGTTCAGAAGAGAGCGCAGCGACTACGACCGTTCCCGCGAGAGAGATGAAAGACGTCGAGGGGACGATTGGAATGACAGAGAGTGGGACCGTGGCCGTGAGCGCCGTAGTCGGGGTGAATATCGGG 5 0.8432052052310741 0.8901206215464941 0.652724375722485 Y Y 3.05206556628006 3.4048855493250496 3.05206556628006 1 0.0 0.0027247956403269 Y 0.0193460490463214 N Y 4428 28645 ENSG00000087077 ENSG00000087087 + - 7 7 100471076 100486285 coding coding TRIP6 SRRT 100464760 100472733 + + 0.0 100466488 100473194 + - N - - N SA470 1 0.0 1.0 1 0 4 Y Y 0.0 0.0 5 0.8939668793444209 1.20491188085552 1.20491188085552 0.8939668793444209 4 - - 0.988439494011547 HCT116-unstranded 10.0 105043 CGGTCATAGTCCCGATATTCACCCCGACTACGGCGCTCACGGCCACGGTCCCACTCTCTGTCATTCCAATCGTCCCCTCGACGTCTTTCATCTCTCTCGCGGGAACGGTCGTAGTCGCTGCGCTCTCTTCTGAACTTGTCCCTGCGCCTTCGATCGTACTCGTCATCACTGTCACCCATGGCACGGTCTGAGGGGG|CCTGTCGGTCTGGTCGCCGTGACGCATGACCCCGACCCCCATTCAGCTCGGCCAGCGTGCTGCTCAGCAAGTCTATCTCGGCGTCCAGGCTTCCAGGGCGAAGGCCCCCCCTGTCTGCAGGGAGCCCCTGAGGATGGAGCCAGGGCAGGAAGAATGCAAATCACCA 9 0.44961166728418106 0.963311829094256 0.934164317244326 Y Y 3.4048855493250496 3.25360004855864 3.25360004855864 0 0.0 0.0 Y 0.0207773241727239 N Y 28645 4428 ENSG00000087087 ENSG00000087077 - + 7 7 100486285 100471076 coding intron SRRT TRIP6 100472733 100464760 + + 0.0 100473194 100465855 - + N - 0.429128132459216 N SA470 1 0.0 1.0 1 0 4 Y Y 0.0 0.0 5 0.945791046262938 0.82270864983146 0.945791046262938 0.82270864983146 4 - 121.2 0.9921004685957132 HCT116-unstranded 10.0 109139 TTGGTCGATTGAAATGTAAGTGCACTCAACCTTGCTCTCCGGTTCGTGATCAGCAGCCGAGAAATACACAACCTCTTGCACTTCATCTCTGGGCCGGGCTGAATTTTTCCCAAATACCACCAGACCATCCTTAGCACGTGGAGGGAAGGCAACAAAACAGTAACTTGGAGGAGCTGCAGCCATC|GTGGAGTGAAATAAGGAGCCGTCCTTTTCTAAGTAGCCTTCATAGTGGACCAACATCAAATCCCCTCCTTTGGTCTTGCGATGGCAGATGAATGGCTTCTGGAGAACTTCAATTTTCACTTCTGGTTCAGGGATCAAAGCCCCAATCAAAGAAGTGACGAACAGAGTCAAGACCGC 37 0.7551846011097451 0.768304655473716 0.5904445928429211 Y Y 3.58337693299909 3.57489529770476 3.57489529770476 1 0.9943339209267192 0.0 Y 0.0 N Y 11671 278 ENSG00000136193 ENSG00000106080 - + 7 7 30029905 30066300 coding coding SCRN1 FKBP14 29959719 30050203 - - 0.0 30008684 30065928 + - N - 0.155177267402463 N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 32 1.19843385999071 1.14013167220738 1.19843385999071 1.14013167220738 4 - 0.4375 0.986349126396968 HCT116-unstranded 10.0 941861 CCCGGAGGCTGAGGCTCTGGCCGCAGCCCGGGAGCGGAGCAGCCGCTTCTTGAGCGGCCTGGAGCTGGTGAAGCAGGGTGCCGAGGCGCGCGTGTTCCGTGGCCGCTTCCAGGGCCGCGCGGCGGTGATCAAGCACCGCTTCCCCAAGGGCTACCGGCACCCGGCGCTGGAGGCGCGGCTTGGCAGACGGCGGACGGTGCAGGAGGCCCGGGCGCTCCTCCGCTGTCGCCGCGCT|GGAAGGCCGCTGCTTGTTTGTCATCCTGCTCATGGCGGTGTACTGGTGCACGGAGGCCCTGCCGCTCTCAGTGACGGCGCTGCTGCCCATCGTCCTCTTCCCCTTCATGGGCATCTTGCCCTCCAACAAGGTCTGCCCCCAGTACTTCCTCGACACCAACTTCCTCTTCCTCAGTGGGCTGATCATGGCCAGCGCCATTGAGGAGTGGAACCTGCACCGGCGAATCGCCC 17 0.8670494837290279 0.5089346394084651 0.60260880117751 Y Y 3.11013383567725 3.54400240599166 3.11013383567725 6 0.9913230080238852 0.0 Y 0.861168128382161 N Y 975 114 ENSG00000172315 ENSG00000158296 + - 20 20 45318418 45304714 coding coding TP53RK SLC13A3 45313004 45186463 - - 0.0 45317771 45242364 - + N - - N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 28 1.56768104928514 1.45107667371848 1.56768104928514 1.45107667371848 4 - - 0.91788857275067 HCT116-unstranded CGHSA0579 10.0 164246 GTGGGCGGGGGCAGGCTGAAAGTTGGAGCAAGCAGGAAGTGAACTGAGGGCCACCCTGGGAGGAAGCCGACTAGGCGAATTCACTTACTGACCGGCCTGGGCTGCTCTGAGACAT|GAGCTCAACCTTCAACAAGACTACACAGAACCTGGCCCAGAAGAAGTGCTGGGAGAACATCCGTTACCGGATCTGCGTGGGGCTGGTGGTGGTTGGTGTCCTGCTCATCATCCTGATTGTGCTGCTGGTCGTCTTTCTCCCTCAGAGCAGTGACAGCAGTAGTGCCCCACGGACCCAGGATGCAGGCATTGCCTCAGGGCCTGGGAACTGACCCAGCTGGTCCTGAAGGAGAAG 7 0.864574133583902 0.3637570986690071 0.890840076184011 Y Y 3.65591337975064 3.39271690522525 3.39271690522525 2 0.991329192546584 0.0 Y 0.0 N Y 3198 138 ENSG00000118640 ENSG00000168899 + - 2 2 85809154 85820535 coding intron VAMP8 VAMP5 85788685 85811531 + + 0.0 85804772 85820071 + - N - 0.265736681092316 N SA470 1 0.0 1.0 1 0 4 N Y 0.0 0.0 6 0.550631773509245 1.27617011036848 1.27617011036848 0.550631773509245 4 - 8.83333333333333 0.98746312719862 HCT116-unstranded CGHSA0565 10.0 164248 AACCTGCAAAGTGAGGTGGAGGGAGTTAAGAATATTATGACCCAGAATGTGGAGCGGATCCTGGCCCGGGGGGAAAACTTGGAACATCTCCGCAACAAGACAGAGGATCTGGAAGCCACA|AGCTCAACCTTCAACAAGACTACACAGAACCTGGCCCAGAAGAAGTGCTGGGAGAACATCCGTTACCGGATCTGCGTGGGGCTGGTGGTGGTTGGTGTCCTGCTCATCATCCTGATTGTGCTGCTGGTCGTCTTTCTCCCTCAGAGCAGTGACAGCAGTAGTGCCCC 4 0.23602129482194506 0.565282328046921 0.15797365877066002 Y Y 3.52567938596249 3.39271690522525 3.39271690522525 5 0.991695601851852 0.0 Y 0.0 N Y 3198 138 ENSG00000118640 ENSG00000168899 + - 2 2 85809154 85820535 coding coding VAMP8 VAMP5 85788685 85811531 + + 0.0 85806290 85820071 + - N - 0.265063451688913 N SA470 1 0.0 1.0 1 0 4 Y Y 0.0 0.0 8 0.54415375264443 1.0235272966407098 1.0235272966407098 0.54415375264443 4 - 6.625 0.973360196775768 HCT116-unstranded CGHSA0565 10.0 164510 CTCTGAGACATGGAGGAAGCCAGTGAAGGTGGAGGAAATGATCGTGTGCGGAACCTGCAAAGTGAGGTGGAGGGAGTTAAGAATATTATGACCCAGAATGTGGAGCGGATCCTGGCCCGGGGGGAAAACTTGGAACATCTCCGCAACAAGACAGAGGATCTGGAAGCCACA|GCAGGAATAGAGTTGGAGCGGTGCCAGCAGCAGGCGAACGAGGTGACGGAAATTATGCGTAACAACTTCGGCAAGGTCCTGGAGCGTGGTGTGAAGCTGGCCGAACTGCAGCAGCGTTCAGACCAACTCCTGGATATGAGCTCAACCTT 10 0.374929723889752 0.721928407016052 0.6906567748014 Y Y 3.52567938596249 3.49268050191626 3.49268050191626 0 0.99330949842146 0.0 Y 0.8862614731648158 N Y 3198 138 ENSG00000118640 ENSG00000168899 + - 2 2 85809154 85820535 coding coding VAMP8 VAMP5 85788685 85811531 + + 0.0 85806290 85818848 + - N - - N SA470 1 0.0 1.0 1 0 4 Y Y 0.0 0.0 7 0.997615213181455 0.790318545507386 0.997615213181455 0.790318545507386 4 - - 0.99395947735247 HCT116-unstranded CGHSA0565 10.0 160831 GGCTGAAAGTTGGAGCAAGCAGGAAGTGAACTGAGGGCCACCCTGGGAGGAAGCCGACTAGGCGAATTCACTTACTGACCGGCCTGGGCTGCTCTGAGACATGGAGGAAGCCAGTGAAGGTGGAGGAAATGATCGTGTGCGGAACCTGCAAAGTGAGGTGGAGGGAGTTAAGAATATTATGACCCAGAATGTGGAGCGGATCCTGGCCCGGGGGGAAAACTTGGAACATCTCCGCAACAAGACAGAGGATCTGGAAGCCACA|GCAGGAATAGAGTTGGAGCGGTGCCAGCAGCAGGCGAACGAGGTGACGGAAATTATGCGTAACAACTTCGGCAAGGTCCTGGAGCGTGGTGTGAAGCTGGCCGAACTGCAGCAGCGTTCAGACCAACTCCTGGATATGAGCTCAACCTTCAACAAGACTACACAGAACCTGGCCCAGAAGAAGTGCTGGGAGAACATCCGTTACCGGA 9 3.33209452040727e-08 0.947030626920198 0.8042241585364741 Y Y 3.52567938596249 3.49268050191626 3.49268050191626 0 0.995202515106974 0.0 Y 0.0 N Y 3198 138 ENSG00000118640 ENSG00000168899 + - 2 2 85809154 85820535 coding coding VAMP8 VAMP5 85788685 85811531 + + 0.0 85806290 85818848 + - N - - N SA470 1 0.0 1.0 1 0 4 Y Y 0.0 0.0 9 0.7773625037777572 0.952269067127752 0.952269067127752 0.7773625037777572 4 - - 0.990048082771178 HCT116-unstranded CGHSA0565 10.0 222255 GGATTATATTCATCGAATTGGAAGAACTGCTCGCAGTACCAAAACAGGCACAGCATACACTTTCTTTACACCTAATAACATAAAGCAAGTGAGCGACCTTATCTCTGTGCTTCGTGAAGCTAATCAAGCAATTAATCCCAAGTTGCTTCAGTTGGTCGAAGACAGAGGTTCAGGT|GCCTTGGAACACTATGTTAATTGCCTGGATCTGGTAAACAAGAGGCTACCTTATGGCCTTGCTCAGATTGGAGTGTGTTTTCATCCTGTTTTTGACACTAAGCAGATACGAAATGGTGTTAAAAGTATTGGTGAGAAGACTGAAGCTTCGTTAGTATGGTTTACTCCTCCGAGAACT 18 1.0 0.7697183237801101 0.7835788063394681 Y Y 3.49272035470961 3.65913638023969 3.49272035470961 0 0.0 0.0 Y 0.00283286118980175 N Y 40228 1902 ENSG00000108654 ENSG00000256525 + - 17 17 62504317 62493154 coding coding DDX5 POLG2 62495734 62473902 - - 0.0 62496667 62489138 - + N - - N SA470 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 12 1.14013167220738 1.16604375566664 1.16604375566664 1.14013167220738 4 - - 0.992455626252426 HCT116-unstranded 10.0 2733 AGAATTATTCAGAGGTGATTGAGGTAGATGAATCAGATGTGGAAGAAGACATTTTTCCTACCACTTCAAAGACAGATCAA|AGGTCATCATGCACCCCTTGAAACCCCGGATCTCAATCACAA 11 5.12451247788081e-14 0.289656823443818 0.8330027617495891 N Y 3.27039548527796 3.4948797802052303 3.27039548527796 0 0.0 0.0 Y 0.0 N Y 1037 1679 ENSG00000020922 ENSG00000123901 + - 11 11 94227074 94134585 coding coding MRE11A GPR83 94152895 94110477 - - 0.0 94168998 94126784 - + N - - N SA470 2 0.0 1.33333333333333 1 2 2 N N 0.0 0.0 6 0.7061042742647959 0.7708844829129431 0.7708844829129431 0.7061042742647959 4 - - 0.932393051867763 HCT116-unstranded 10.0 4739 CGAAGAGGTGGAAGAGGGCAGAATTCAGCATCGAGAGGAGGGTCTCAAAGAGGAAGAGCCTTTAAATCTACAAGACAGCAGCCTTCCCGAAATGTCACTACTAAGAATTATTCAGAGGTGATTGAGGTAGATGAATCAGATGTGGAAGAAGACATTTTTCCTACCACTTCAAAGACAGATCAAAGGT|CATCATGCACCCCTTGAAACCCCGGATCTCAATCACAAAGGGTGTCATCTACATCGCTGTCATCTGGACCATGGCTACGTTCTTTTCACTCCCACATGCTATCTGCCAGAAATTATTTACCTTCAAATACAGTGAGGACATTGTGCGCTCCCTCTGCCTGCCAGACTTCCCTGAGCCAGCTGACCTCTTCTGGAAGTACCTGGACTTGGCCACCTTCATCCTGCTCTACATCCTGCCCCTCCTCATCAT 20 0.14447310490054802 0.8900174331896229 0.716189795936275 N Y 3.31063524818594 3.3325519910647405 3.31063524818594 0 0.0 0.0 Y 0.0 N Y 1037 1679 ENSG00000020922 ENSG00000123901 + - 11 11 94227074 94134585 coding coding MRE11A GPR83 94152895 94110477 - - 0.0 94168998 94126784 - + N - - N SA470 2 0.0 1.2 1 1 2 N N 0.0 0.0 5 1.20491188085552 1.21138990172034 1.21138990172034 1.20491188085552 4 - - 0.968244183667883 HCT116-unstranded 10.0 6105 ATCGAGAGGAGGGTCTCAAAGAGGAAGAGCCTTTAAATCTACAAGACAGCAGCCTTCCCGAAATGTCACTACTAAGAATTATTCAGAGGTGATTGAGGTAGATGAATCAGATGTGGAAGAAGACATTTTTCCTACCACTTCAAAGACAGATCAAAGGT|CATCATGCACCCCTTGAAACCCCGGATCTCAATCACAAAGGGTGTCATCTACATCGCTGTCATCTGGACCATGGCTACGTTCTTTTCACTCCCACATGCTATCTGCCAGAAATTATTTACCTTCAAATACAGTGAGGACATTGTGCGCTCCCTCTGCCTGCCAGACTTCCCTGAGCCAGCTGACCTCTTCTGGAAGTACCTGGACTTGGCCA 20 0.0435683054057158 0.8900174331896229 0.716189795936275 N Y 3.31063524818594 3.3325519910647405 3.31063524818594 0 0.0 0.0 Y 0.0 N Y 1037 1679 ENSG00000020922 ENSG00000123901 + - 11 11 94227074 94134585 coding coding MRE11A GPR83 94152895 94110477 - - 0.0 94168998 94126784 - + N - - N SA470 2 0.0 1.14285714285714 1 5 2 N N 0.0 0.0 35 1.52881292409626 1.27617011036848 1.52881292409626 1.27617011036848 4 - - 0.985920431436856 HCT116-unstranded 10.0 382523 CCCGAGTGTCAGGGACAAAAGCCTCCGCCTGCTCCCGCAGACGGGGCTCATCTGCCGCCGCCGCCGCGCTGAGGAGAGTTCGCCGCCGTCGCCGCCCGTGAGGATCTGAGAGCCATGTCGGCCAGCAGCCTCTTGGAGCAGAGACCAAAAGGTCAAGGAAACAAA|GGTACACTAAGATGAAGACGGCCACCAACATCTACATCTTCAACCTGGCCTTAGCCGATGCGCTGGCCACCAGCACGCTGCCTTTCCAGAGTGCCAAGTACCTGATGGAGACGTGGCCCTTCGGCGAGCTGCTCTGCAAGGCTGTGCTCTCCATCGACTACTACAATATGTTCACCAGCATCTTCACGCTCACCATGATGAGTGTTGACCGCTACATCGCTGTCTGCCACC 174 0.00550165452534359 0.6034894562350489 0.6279753860261329 Y Y 3.30232144676095 3.77530342425761 3.30232144676095 1 0.0 0.0 Y 0.0 N Y 13635 3172 ENSG00000198492 ENSG00000116329 + - 1 1 29096287 29190208 coding coding YTHDF2 OPRD1 29063133 29138654 + + 0.0 29064194 29185466 + - N - - N SA470 1 0.0 1.0 1 0 4 N Y 0.0 0.0 146 1.6195052162036598 1.502900840637 1.6195052162036598 1.502900840637 4 - - 0.9788901115617892 HCT116-unstranded 10.0 379474 AGAGCGTCGCCGAGTCGGAGCCGGAGCCTGAGCCGCGCGCTGTGTCTCCGCTGCGTCCGCCGAGGCCCCCGAGTGTCAGGGACAAAAGCCTCCGCCTGCTCCCGCAGACGGGGCTCATCTGCCGCCGCCGCCGCGCTGAGGAGAGTTCGCCGCCGTCGCCGCCCGTGAGGATCTGAGAGCCATGTCGGCCAGCAGCCTCTTGGAGCAGTACAAAATGGATCTGTACATCAAAAGGATGGATTAAACGATGATGATTTTGAACCTTACTTGAGTCCACAGGCAAGGCCC|GTACACTAAGATGAAGACGGCCACCAACATCTACATCTTCAACCTGGCCTTAGCCGATGCGCTGGCCACCAGCACGCTGCCTTTCCAGAGTGCCAAGTACCTGATGGAGACGTGGCCCTTCGGCGAGCTGCTCTGCAAGGCTGTGCTCTCCATCGACTACTACA 166 1.09255801157581e-06 0.561902121857251 0.559173156689259 Y Y 3.65488030998075 3.75594733445854 3.65488030998075 0 0.0 0.0 Y 0.0 N Y 13635 3172 ENSG00000198492 ENSG00000116329 + - 1 1 29096287 29190208 coding coding YTHDF2 OPRD1 29063133 29138654 + + 0.0 29064850 29185466 + - N - 0.0046644013896123 N SA470 1 0.0 1.0 1 0 4 Y Y 0.0 0.0 5 0.570065836103689 0.595977919562947 0.595977919562947 0.570065836103689 4 - 2.4 0.991240892989256 HCT116-unstranded 10.0 370707 GGTGAACATATTGTAGTAGTCGATGGAGAGCACAGCCTTGCAGAGCAGCTCGCCGAAGGGCCACGTCTCCATCAGGTACTTGGCACTCTGGAAAGGCAGCGTGCTGGTGGCCAGCGCATCGGCTAAGGCCAGGTTGAAGATGTAGATGTTGGTGGCCGTCTTCATCTTAGTG|TACCTTTGTTTCCTTGACCTTTTGGTCTCTGCAGGGGAAGGAAACGTCGCCGAGCAGCAAGTTGTCCAAAGGAGAAATGGAAAAGGAAGAACAAATTAAGGCAGGGCCCGAAGGGAGAATAAAGGAGCAGGCCCGAGGGGAGGCGTCAGGAATGGTAGTGA 37 0.6169444030620229 0.548942322980146 0.5659354420750219 Y Y 3.64337401329026 3.37192651807217 3.37192651807217 3 0.0 0.0 Y 0.0 N Y 3172 13635 ENSG00000116329 ENSG00000198492 - + 1 1 29190208 29096287 coding intron OPRD1 YTHDF2 29138654 29063133 + + 0.0 29185466 29064194 - + N - 0.308921040572532 N SA470 1 0.0 1.0 1 0 4 N Y 0.0 0.0 9 0.952269067127752 1.03000531750553 1.03000531750553 0.952269067127752 4 - 148.111111111111 0.992612272614827 HCT116-unstranded 10.0 379745 GGCATTGAGCTCTTGGGCTAGAGCGTCGCCGAGTCGGAGCCGGAGCCTGAGCCGCGCGCTGTGTCTCCGCTGCGTCCGCCGAGGCCCCCGAGTGTCAGGGACAAAAGCCTCCGCCTGCTCCCGCAGACGGGGCTCATCTGCCGCCGCCGCCGCGCTGAGGAGAGTTCGCCGCCGTCGCCGCCCGTGAGGATCTGAGAGCCATGTCGGCCAGCAGCCTCTTGGAGCAGAGACCAAAAGGTCAAGGAAACA|AAGGTACACTAAGATGAAGACGGCCACCAACATCTACATCTTCAACCTGGCCTTAGCCGATGCGCTGGCCACCAGCACGCTGCCTTTCCAGAGTGCCAAGTACCTGATGGAGACGTGGCCCTTCGGCGAGCTGCTCTGCAAGGCTGTGCTCTCCATCGACTACTACAATATGTTCACCAGCATCTTCACGCTCACCATGATGAGTGTTGACCGCTACATCGCTGTCTGCCA 179 0.364286093311314 0.615940794524515 0.638250243933598 Y Y 3.35356364524965 3.69209541149257 3.35356364524965 2 0.0 0.0020790020790021303 Y 0.0020790020790021303 N Y 13635 3172 ENSG00000198492 ENSG00000116329 + - 1 1 29096287 29190208 coding intron YTHDF2 OPRD1 29063133 29138654 + + 0.0 29064194 29185466 + - N - 0.00466849731166876 N SA470 1 0.0 1.0 1 0 4 N Y 0.0 0.0 51 1.65189532052773 1.51585688236663 1.65189532052773 1.51585688236663 4 - 0.235294117647059 0.98724622535452 HCT116-unstranded 10.0 295143 GCAGGAGTTCCGGATCCAGCTTCTTGTCTTCAAACACAAGATGAAGAACCTCGTGTGGACCAGCGGTATCTCAGCCCTGGATGGTGAATTTCAGTCAGCCTCAGAGGTTGACTTCTACATTGATAAG|GTGTCGGCGGTGCTCCAGCACCCTGCTCCCTGGGGCTTATGAGAATGGGCCTGAGGAGGGCACCTTTGTGTGTGCAGAACACTGTGCCAGGCTGGGCCCGGGGACACGGTCGGGGACCAGGCCTGGGCCCTTCTCACAGCCAAAGCAGCAGCACCAGCAG 9 0.010267227545059 0.9145314682457092 0.99696470262637 N Y 3.6659225983548303 3.4048855493250496 3.4048855493250496 0 0.0 0.0 Y 0.0 N Y 55060 3493 ENSG00000100129 ENSG00000100139 + - 22 22 38285414 38338829 coding coding EIF3L MICALL1 38244875 38301664 + + 0.0 38274178 38317979 + - N - 0.328945860696144 N SA470 3 0.0 1.7037037037037 1 11 5 N N 0.0 0.0 27 1.2373019851796 1.05591740096479 1.2373019851796 1.05591740096479 4 - 5.2962962962963 0.9436390460440592 HCT116-unstranded 10.0 379796 AGCTGCTTCCTGGAATGCATTGACAGCTGCTGGAATATCCCCCATCACCAGATGTTTCTGTCCTAAACCCAATAGTTTCTTAGCTTCACTATCCACATCCAGACTCTCCACTTTATCTGCAGATGTAGAAGGAGCAGGAACATCTTCAATT|CTTGGCACAAGCACAGAGCGTGAATAGGGTACTGTGGCCTGGGCTCAGTTCTGCACCCCGCCAGAGATCCAACGATCCTCAGCTTAAGTCTGGCGGTGAGGGGGAAGTTCCACCCGGAGGGAGGGGCAGGGGCCGGGCATAAAGGATCACGCGCA 14 0.0185241783027732 0.491040903198601 0.904240298762327 Y Y 3.61464054707278 3.68783934123363 3.61464054707278 0 0.0 0.0 Y 0.0 N Y 13686 9410 ENSG00000132780 ENSG00000117448 - + 1 1 46084566 46035721 coding utr5p NASP AKR1A1 46049518 46016215 + + 0.0 46056895 46016827 - + N - 0.387468043689616 N SA470 2 0.0 1.4 1 4 5 N Y 0.0 0.0 10 1.41220854852959 0.7708844829129431 1.41220854852959 0.7708844829129431 4 - 125.9 0.923536344363194 HCT116-unstranded 10.0 384191 ACAACCCCTTCCCCAAGAATGCTGATGGGACTATATGCTACGACTCCACCCACTACAAGGAGACTTGGAAGGCTCTGGAGGCACTGGTGGCTAAGGGGCTGGTGCAGGCGCTGGGCCTGTCCAACTTCAACAGTCGGCAGATTGATGACATACTCAGTGTGGCCTCCGTGCGTCCAGCTGTCTTGCAG|AATTGAAGATGTTCCTGCTCCTTCTACATCTGCAGATAAAGTGGAGAGTCTGGATGTGGATAGTGAAGCTAAGAAACTATTGGGTTTAGGACAGAAACATCTGGTGATGGGGGATATTCCAGCAGCTGTCAATGCATT 12 0.270609492837334 0.4799494826781671 0.334406941149307 Y Y 3.5744007841648 3.61464054707278 3.5744007841648 0 0.0 0.0 Y 0.0 N Y 9410 13686 ENSG00000117448 ENSG00000132780 + - 1 1 46035721 46084566 coding coding AKR1A1 NASP 46016215 46049518 + + 0.0 46033849 46056895 + - N - - N SA470 2 0.0 1.33333333333333 1 2 5 N Y 0.0 0.0 6 1.29560417296293 0.8615767750203471 1.29560417296293 0.8615767750203471 4 - - 0.920582575208034 HCT116-unstranded 10.0 384193 CAAGAATGCTGATGGGACTATATGCTACGACTCCACCCACTACAAGGAGACTTGGAAGGCTCTGGAGGCACTGGTGGCTAAGGGGCTGGTGCAGGCGCTGGGCCTGTCCAACTTCAACAGTCGGCAGATTGATGACATACTCAGTGTGGCCTCCGTGCGTCCAGCTGTCTTGCAG|AATTGAAGATGTTCCTGCTCCTTCTACATCTGCAGATAAAGTGGAGAGTCTGGATGTGGATAGTGAAGCTAAGAAACTATTGGGTTTAGGACAGAAACATCTGGTGATGGGGGAT 12 1.2418483924077102e-07 0.307995766534976 0.493174657240567 Y Y 3.5744007841648 3.61464054707278 3.5744007841648 0 0.0 0.0 Y 0.0 N Y 9410 13686 ENSG00000117448 ENSG00000132780 + - 1 1 46035721 46084566 coding coding AKR1A1 NASP 46016215 46049518 + + 0.0 46033849 46056895 + - N - - N SA470 2 0.0 1.3636363636363602 1 4 5 N Y 0.0 0.0 11 1.3150382355573702 1.24378000604441 1.3150382355573702 1.24378000604441 4 - - 0.9236527517870772 HCT116-unstranded 10.0 1135707 ATCAACACCAAGATCAAAAGGACAAGAATCCTTCAAGAAACAGGAAAAAACTCCTAAAACACCAAAAGGACCTAGTTCTGTAGAAGACATTAAAGCAAAAATGCAAGCAAGTATAGAAAAAGGTGGTTCTCTTCCCAAAGTGGAAGCCAAATTCATCAATTATGTGAAGAATTGCTTCCGGATGACTGACCAAG|AGGTGCTGGTTGCCGAGGAGAACGTGGACTTCCGCATCCACGTGGAGAACCAGACGCGGGCTCGGGACGATGTGAGCCGTAAGCAGCTGCGGCTGTACCAGCTCTACAGCCGGACCAGTGGGAAACACATCCAGGTCCTGGGCCGCAGGATCAGTGCCCGCGGCGAGGATGGGGACAAGTATGCCCAGCTCCTAGTGGAGACAGACACCTTCGGTAGTCAAGTCCGGATCAAGGGCAAGGAGACGGAATTCTAC 90 0.00144383663326627 0.7245545332541321 0.5 Y Y 3.7576122464142 3.80400638525155 3.7576122464142 1 0.0 0.0 Y 0.0 N Y 136009 5236 ENSG00000181163 ENSG00000156427 + - 5 5 170838141 170884627 coding coding NPM1 FGF18 170814120 170846660 + + 0.0 170834778 170863097 + - N - - N SA470 21 0.0 12.5625 1 14 6 Y Y 0.0 0.0 16 0.7708844829129431 1.25673604777404 1.25673604777404 0.7708844829129431 4 - - 0.9127141201779808 HCT116-unstranded 10.0 1100328 GTTGGCGCCGAGGGGAGGAGGCAGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGTTGCGCAGATCCGGGCCGCGGCTGTGGGGAGGGCGACGGAGCGGGTGACCTTCCGGAGGCGGGAGCGAGCGAGGAGGCCCGGGAGCGCCGAGCGTCGCCGCCGCCGCCGCCATGAACAACTCGGGCGCCGACGAGATCGG|TGGGACCTGAACCGCCAAACCGCACCTACGAGCAAACGGTAGGCGCTCCATAAATACTTGTTGATGTGGGTGCCATCGTGTAGATGACGGAGCACGAACCCGAGGCTCAGACAGGGGCGGCGACTTGTCCAAAGTCCCACTCCGTGGAGGAAGCGGCTCTGCAGACCTCAGGCGGCGGCTGCTCTAATCCCTGCAGCCTGTGTTTTGCCCTCCAGACGGCAGAGGGCGCGTGTTCGCCGCCG 51 0.62433491532635 0.836379464524975 0.728684877139614 Y Y 3.35566963758278 3.3368080613236804 3.3368080613236804 0 0.995156442580059 0.0 Y 0.0 N N 14233 128194 ENSG00000071626 ENSG00000115268 + - 19 19 1435719 1441066 coding upstream DAZAP1 RPS15 1407584 1438358 + + 0.0 1407801 1438072 + - N 1.76435509058754 - N SA470 13 0.3958333333333329 1.40384615384615 1 2 2 N Y 0.19545454545454505 0.3958333333333329 52 1.42516459025922 1.55472500755551 1.55472500755551 1.42516459025922 4 30.5 - 0.9556011852230608 HCT116-unstranded 10.0 6936 CAATGGAGCCGAGCCCAACTACCACAGCCTGCCTTCCGCTCGCACTGATGAGCAGGCCCTGCTCTCTTCCATCCTTGCCAAGACAGCCAG|GCGCATTGGAGTGACTGTCTGGCATCACCAAGATGACACTCCACGCCACCCGGGGGGCTGCACTCCTCTCTTGGGTGAACAGTCTACACGTGGCTGACCCTGTGGAGGCTGTGCTGCAGCTCCAGGACTGCAGCATCTTCATCAAGATCATTGACAGAATCCATGGC 2 0.000841651239884933 0.26761510521576604 0.449278854840501 Y Y 3.35377133191234 3.70889084821189 3.35377133191234 1 0.9114556416882 0.0 Y 0.0038759689922481795 N Y 6881 21210 ENSG00000149357 ENSG00000137497 + - 11 11 71814433 71791739 coding utr5p LAMTOR1 NUMA1 71796941 71713910 - - 0.0 71810157 71747021 - + N - - N SA470 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 8 1.34742833988145 0.971703129722196 1.34742833988145 0.971703129722196 4 - - 0.978541260279468 HCT116-unstranded 10.0 6882 CCCTGCTCTCTTCCATCCTTGCCAAGACAGCCAGCAACATCATTGATGTGTCTGCTGCAGACTCACAGGGCATGGAGCAGCATGAGTACATGGACCGTGCCAGGCAGTACAGCACCCGCTTGGCTGTGCTGAGCAGCAGCCTGACCCATTGGAAGAAGCTGCCACCGCTGCCGTCTCTTACCAGCCAGCCCCACCAAGTGCTGGCCAGTGAGCCCATCCCGTTCTCTGATTTGCAG|CAGGTGGAAACTAATTCTAAGCCAGACTGCTGGAGATCACCCTGTTCTAGTGTGTGGAGGCTTCCACCAGGAGGCGCATTGGAGTGACTGTCTGGCATCACCAAGATGACACTCCACGCCACCCGGGGGGCTGCACTCCTCTCTTGGGTGAACAGTCTACACGTGGCTGACCCTGTGGAGGCTGTGCTGCAGCTCCAGGACTGCAGCATCTTCATCAAGATCATTGACAGAATCCATGGCACTGAAGAGGGA 4 0.431388520260753 0.478208782666629 0.7394999307044341 Y Y 3.40744620240479 3.71976530271662 3.40744620240479 0 0.995771377075318 0.0062736126997332605 Y 0.0062736126997332605 N Y 6881 21210 ENSG00000149357 ENSG00000137497 + - 11 11 71814433 71791739 coding utr5p LAMTOR1 NUMA1 71796941 71713910 - - 0.0 71809335 71780957 - + N - - N SA470 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 7 0.965225108857382 1.17899979739626 1.17899979739626 0.965225108857382 4 - - 0.99108333316238 HCT116-unstranded 10.0 162718 ACCTCAAATATTGTCCAGTGTTTAGCAGCTATGTTGGATACTGTCGTATTTAAATAAAGCAACGAAAAACGCTATTAATGATGCCTTCAGTGTATATTCCTCTGTTGTTCCTAATGCTCAAAATCAAGGGACCTCTGAAGGTGTACTTGGCTAAAT|ATCAGCGCTTCTGACGAGCCCATTTGCACGGGGACTCGGCCCTCTCTTTTCCTGGCGAGGCTTTTGAACCTGTCGCCAAGCCAGTACCTCAGAGAGAAGGAAATGCAGAGGGACGAGAAGGATGCATGGCGCCTGCCCCCAGTTAGATGTTCTTCAGATAATCTGCAACCAAGTGCGCTG 25 1.0 0.8688529817700699 0.73400891510353 Y Y 3.5587317031712 3.43937216388778 3.43937216388778 0 0.0 0.0 Y 0.0 N N 18285 970 ENSG00000115233 ENSG00000136535 + - 2 2 162268228 162282381 utr3p upstream PSMD14 TBR1 162164549 162272605 + + 0.0 162268010 162271746 + - N - - N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 20 1.00409323404627 1.09478552615367 1.09478552615367 1.00409323404627 4 - - 0.9942315411823952 HCT116-unstranded 10.0 222375 CTTTTCATGTACAAACCCAAGAAAGTTGTTGGGATAGAAGAACACACAGTCGGCTATGGAGAGCTACTCTTGCTATTATCGCTGACCCTGGATGGACTGACTGGTGTTTCCCAGGACCACATGCGGGCTCATTACCAAACAGGCTCCAACCACATGATGCTGAACATCAACCTTTGGTCGACATTGCTGCTGGGAATGG|AGTGGAGTCTCACTATGTTGCCCAGGCTGATCTTGAACTTCTGGTCTCAAGAAACCCTCCCGCTCCAGCCTCCAGAAGCTCTTGGATTACAGGCTTGAGCCACTGCACCTGGCCCAACCACACTAATCTTCGTGGAGTTTCTAAAAAACTTCAAGCCCTCCCTGGCCTTAGATTCTCTGCCTGCCTGGACGGTTTTTCCCCAATTCCCCTTCACCCAC 11 0.605233304243562 0.7920581961947121 0.43061075695659706 Y Y 3.5261738995024503 3.68850168864294 3.5261738995024503 1 0.0 0.0 Y 0.0 N N 8406 2537 ENSG00000121073 ENSG00000121067 + - 17 17 47786376 47755596 coding upstream SLC35B1 SPOP 47778305 47676246 - - 0.0 47781462 47765880 - + N - - N SA470 1 0.472081218274112 1.0 1 0 4 N Y 0.0 0.472081218274112 12 1.14013167220738 1.27617011036848 1.27617011036848 1.14013167220738 4 - - 0.990264525985115 HCT116-unstranded 10.0 222377 TGGAGAGCTACTCTTGCTATTATCGCTGACCCTGGATGGACTGACTGGTGTTTCCCAGGACCACATGCGGGCTCATTACCAAACAGGCTCCAACCACATGATGCTGAACATCAACCTTTGGTCGACATTGCTGCTGGGAATGG|ATATCATGTATTCCTGCCATTTCCCAGGTTAAAACCTCAGAACTTCTATGTCTGTAAACATATATTGATCAAGTCCTCAGATAAGTACACCATTCCAAGCTGTTTTTTGTTTGTTTGTTTGTTTTTTGGGTTTTTTTTTTTTGAGACAGTGTCTGGCTCTGTCG 8 0.561647972304699 0.865943275601726 0.28363253895945195 Y Y 3.5261738995024503 3.4655144718019804 3.4655144718019804 1 0.0 0.0 Y 0.0 N N 8406 2537 ENSG00000121073 ENSG00000121067 + - 17 17 47786376 47755596 coding upstream SLC35B1 SPOP 47778305 47676246 - - 0.0 47781462 47762546 - + N - - N SA470 1 0.270588235294118 1.0 1 0 4 N Y 0.0 0.270588235294118 10 0.952269067127752 0.550631773509245 0.952269067127752 0.550631773509245 4 - - 0.988542087031788 HCT116-unstranded 10.0 371811 CAAGTCCCATGAAGCTGAGGTCTTGAAGCAGCTGGCTGAGAAACGAGAGCACGAGAAAGAAGTGCTTCAGAAGGCAATAGAAGAGAACAACAACTTCAGTAAAATGGCAGAAGAGAAACTGACCCACAAAATGGAAGCTAATAAAGAGAACCGAGAGGCACAAATGGCTGCCAAACTGGAACGTTTGCGAGAGAAG|CTCCCTGCCCAGGCCCACAGCCATGGCCATGGCCCAGAAACTCAGCCACCTCCTGCCGAGTCTGCGGCAGGTCATCCAGGAGCCTCAGCTATCTCTGCAGCCAGAGCCTGTCTTCACGGTGGATCGAGCTGAGGTGCCGCCGCTCTTCTGGAAGCCGTACATCTATGCGGGCTACCGGCCGCTGCATCAGACCTGGCGCTTCTATTTCCGCACGCTGTTCCAGCAGCACAACGAGGC 192 0.9047594968059208 0.943313728211277 0.547276738854403 N Y 3.46807512488172 3.04640570389065 3.04640570389065 0 0.984729145114267 0.0 Y 0.0 N Y 48505 5481 ENSG00000117632 ENSG00000182749 + - 1 1 26233482 26197744 coding intron STMN1 PAQR7 26210672 26187701 - - 0.0 26227982 26190352 - + N - 22.6624625277144 N SA470 2 0.0 1.02459016393443 1 6 3 N N 0.0 0.0 244 1.29560417296293 1.56768104928514 1.56768104928514 1.29560417296293 4 - 0.0901639344262295 0.988439494011547 HCT116-unstranded 10.0 383564 GGATGACCTGCCGCAGACTCGGCAGGAGGTGGCTGAGTTTCTGGGCCATGGCCATGGCTGTGGGCCTGGGCAGGGAGCT|TCTCTCGCAAACGTTCCAGTTTGGCAGCCATTTGTGCCTCTCGGTTCTCTTTATTAGCTTCCATTTTGTGGGTCAGTTTCTCTTCTGCCATTTTACTGAAGTTGTTGTTCTCTTCTATTGCCTTCTGAAGCACTTCTTTCTCGTGCTCTCGTTTCTCAGCCAGCTGCT 174 0.0012548322437617 0.783630850303661 0.7227627984823559 N Y 2.99871737545823 3.45872825368684 2.99871737545823 0 0.987392813393222 0.0 Y 0.0 N Y 5481 48505 ENSG00000182749 ENSG00000117632 - + 1 1 26197744 26233482 utr5p coding PAQR7 STMN1 26187701 26210672 - - 0.0 26190352 26227982 + - N - 1.04181122067948 N SA470 1 0.536144578313253 1.0 1 0 1 Y N 0.536144578313253 0.0 7 1.07535146355923 0.926356983668494 1.07535146355923 0.926356983668494 4 - 2240.14285714286 0.931883289390985 HCT116-unstranded 10.0 376506 TCCCGCTCTGCTGCCGTCACCTCAGAGTTCCACTTGGTGCCTAGCCGCAGCATGAATGGGCAGCCACTGACTTGTGTGGTGTCCCATCCTGGCCTGCTCCAGGACCAAAGGATCACCCACATCCTCCACGTGTCCT|GAGGCTGTAGGAGTGCAATTGGAACCTGAGCGCTTGGTCAAGATCCTAGAGGTGCTTCGGGAACTCCCTGTCCCAAACTACAGGTATGTGACACTCCATATCTGCCCAGCAACCTGAGACAACTCATTCACTCGCTGCCTGGAGCCTTAACTGGGTCCTACTGCTCCCAGGTCCCAGCCCTAATGCCTGCCCTG 63 0.683987591616024 0.868862489686106 0.707739269699262 Y Y 3.33784113109356 3.76951977068882 3.33784113109356 0 0.0 0.0 Y 0.0 N Y 767 2496 ENSG00000143217 ENSG00000186517 + - 1 1 161059389 161039760 coding coding PVRL4 ARHGAP30 161040785 161016736 - - 0.0 161047243 161024495 - + N - 46.7094358615791 N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 5 0.8097526081018299 0.82270864983146 0.82270864983146 0.8097526081018299 4 - 2.6 0.985473616323782 HCT116-unstranded 10.0 373254 AAGGAGCTATGCTCAAGTGCCTGAGTGAAGGGCAGCCCCCTCCCTCATACAACTGGACACGGCTGGATGGGCCTCTGCCCAGTGGGGTACGAGTGGATGGGGACACTTTGGGCTTTCCCCCACTGACCACTGAGCACAGCGGCATCTACGTCTGCCATGTCAGCAATGAGTTCTCCTCAAGGGATTCTCAGGTCACTGTGGATGTTCTTG|GAGGCTGTAGGAGTGCAATTGGAACCTGAGCGCTTGGTCAAGATCCTAGAGGTGCTTCGGGAACTCCCTGTCCCAAACTACAGGACCCTGGAGTTCCTCATGAGGCACTTGGTACACATGGCCTCATTCAGTGCCCAGACCAACATGCATGCTCGCAACCTGGCCATCGT 8 1.0 0.8044475763632328 0.244699263274448 Y Y 3.418448637985509 3.76951977068882 3.418448637985509 0 0.0 0.0 Y 0.0 N Y 767 2496 ENSG00000143217 ENSG00000186517 + - 1 1 161059389 161039760 coding coding PVRL4 ARHGAP30 161040785 161016736 - - 0.0 161044401 161024495 - + N - - N SA470 1 0.0 1.0 1 0 5 N Y 0.0 0.0 12 1.28912615209811 1.03000531750553 1.28912615209811 1.03000531750553 4 - - 0.992339981631 HCT116-unstranded 10.0 373255 TGCCTTCTGGTGGTGGTGGTGGTGCTCATGTCCCGATACCATCGGCGCAAGGCCCAGCAGATGACCCAGAAATATGAGGAGGAGCTGACCCTGACCAGGGAGAACTCCATCCGGAGGCTGCATTCCCATCACACGGACCCCAGGAGCCAG|GCCTATTTCAGAGAACTGCCGGATCCCCTGCTCACTTACCGGCTCTATGACAAGTTTGCTGAGGCTGTAGGAGTGCAATTGGAACCTGAGCGCTTGGTCAAGATCCTAGAG 1 0.000259061691069142 0.869049009391875 0.904167730469144 Y Y 3.38912318237562 3.62361669590707 3.38912318237562 0 0.0 0.0 Y 0.0 N N 767 2496 ENSG00000143217 ENSG00000186517 + - 1 1 161059389 161039760 coding coding PVRL4 ARHGAP30 161040785 161016736 - - 0.0 161043510 161026237 - + N - - N SA470 1 0.0 1.0 1 0 5 Y Y 0.0 0.0 6 0.8810108376147909 0.997615213181455 0.997615213181455 0.8810108376147909 4 - - 0.990048082771178 HCT116-unstranded 10.0 367559 CCCCAGGAAGACTCTGGGAAGCAGGTGGACCTAGTGTCAGCCTCGGTGGTGGTGGTGGGTGTGATCGCCGCACTCTTGTTCTGCCTTCTGGTGGTGGTGGTGGTGCTCATGTCCCGATACCATCGGCGCAAGGCCCAGCAGATGACCCAGAAATATGAGGAGGAGCTGACCCTGACCAGGGAGAACTCCATCCGGAGGCTGCATTCCCATCACACGGACCCCAGGAGCCAG|GAGGCTGTAGGAGTGCAATTGGAACCTGAGCGCTTGGTCAAGATCCTAGAGGTGCTTCGGGAACTCCCTGTCCCAAACTACAGGACCCTGGAGTTCCTCATGAGGCACTTGGTACACATGGCCTCATTCAGTGCCCAGACCAACATGCATGCTCGCAACCTGGCCATCGTGTGGGCTCCCA 6 0.266773838315297 0.302002426197297 0.256043348954354 Y Y 3.38912318237562 3.76951977068882 3.38912318237562 0 0.0 0.0 Y 0.00242130750605318 N Y 767 2496 ENSG00000143217 ENSG00000186517 + - 1 1 161059389 161039760 coding coding PVRL4 ARHGAP30 161040785 161016736 - - 0.0 161043510 161024495 - + N - - N SA470 1 0.0 1.0 1 0 5 Y Y 0.0 0.0 11 1.41220854852959 1.04943938009997 1.41220854852959 1.04943938009997 4 - - 0.975127104825152 HCT116-unstranded 10.0 373732 GGGCCTGACCCTGGCAGCCTCCTGCACAGCTGAGGGCAGCCCAGCCCCCAGCGTGACCTGGGACACGGAGGTCAAAGGCACAACGTCCAGCCGTTCCTTCAAGCACTCCCGCTCTGCTGCCGTCACCTCAGAGTTCCACTTGGTGCCTAGCCGCAGCATGAATGGGCAGCCACTGACTTGTGTGGTGTCCCATCCTGGCCTGCTCCAGGACCAAAGGATCACCCACATCCTCCACGTGTCCT|GAGGCTGTAGGAGTGCAATTGGAACCTGAGCGCTTGGTCAAGATCCTAGAGGTGCTTCGGGAACTCCCTGTCCCAAACTACAGGACCCTGGAGTTCCTCATGAGGCACTTGGTACACATGGCCTCATTCAGTGCCCAGACCAACATGCATGCTCGCAACCTGGCCATCGTGTGGGCTCCCAACCTGCTGAGGTCTAAGGACATAGAGGCCTCAGGCTTCAATGGGACAGCGGCCTTCATGGAGG 65 0.72544256807815 0.7855555578260981 0.6880183015635849 Y Y 3.33784113109356 3.76951977068882 3.33784113109356 1 0.0 0.0 Y 0.0 N Y 767 2496 ENSG00000143217 ENSG00000186517 + - 1 1 161059389 161039760 coding coding PVRL4 ARHGAP30 161040785 161016736 - - 0.0 161047243 161024495 - + N - - N SA470 1 0.0 1.0 1 0 5 N Y 0.0 0.0 60 1.58063709101477 1.6195052162036598 1.6195052162036598 1.58063709101477 4 - - 0.9937791697056568 HCT116-unstranded 10.0 693994 GCCTAACGCCGCCAACATGGTGTTCAGGCGCTTCGTGGAGGTTGGCCGGGTGGCCTATGTCTCCTTTGGACCTCATGCCGGAAAATTGGTCGCGATTGTAGATGTTATTGATCAGAACAGGGCTTTGGTCGATGGACCTTGCACTCAAGTGAGGAGACAGGCCATGCCTTTCAAGTGCATGCAGCTCACTGATTTCATCCTCAAGTTTCCG|CACAGGTGGTAAAACCAAGACTGAGAATGAGGAAAAAACTGCACAGCTAAACATTTCTAAAGAATCAGAGTCCCACAGACTGATAGTGGAGGGACTGCTGATGGACGTTCCCCAGCACCCTGACTTCAAGGACAGGTTAGAGAAGTCACAGCTACATGATACAGGG 80 0.719142741339888 0.964611826369771 0.6900589957171109 Y Y 3.50425715662364 3.1986844216336 3.1986844216336 3 0.0 0.0 Y 0.0 N Y 90708 7576 ENSG00000188846 ENSG00000177873 + - 3 3 40503861 40531727 coding coding RPL14 ZNF619 40498783 40518604 + + 0.0146618218907375 40500227 40528297 + - N - - N SA470 4 0.0 2.63157894736842 1 37 3 N Y 0.0 0.0 38 1.34095031901663 1.12717563047775 1.34095031901663 1.12717563047775 4 - - 0.949070427975791 HCT116-unstranded 10.0 693624 CCTTTCAGTGGTGGAAGATTCATGATCCTGGACTGTCAAATCTGTGCAATCCCCTATCTTTGTTTTATTCCCTGTATCATGTAGCTGTGACTTCTCTAACCTGTCCTTGAAGTCAGGGTGCTGGGGAACGTCCATCAGCAGTCCCTCCACTATCAGTCTGTGGGACTCTGATTCTTTAGAAATGTTTAGCTGTGCAGTTTTTTCCTCATTCTCAGTCTTGGTTTTACCAC|CTCTGGAAGAGATTGGCATTTGAATGGGTAGACTGAGTAAAGATGACCTTCACCAATGCAGGTGGGCATCATCCTATCCACGGAAGGTTCAAATAGAACAAAATGGGGGAGGAAGCGTGAATTTGCTTTTTTAATCTGGGAAACCC 21 0.944950067303652 0.943347865755548 0.6839625274009029 Y Y 3.2693225627147204 3.472331195140661 3.2693225627147204 0 0.0 0.0436394026379857 Y 0.0 N N 7576 90708 ENSG00000177873 ENSG00000188846 - + 3 3 40531727 40503861 coding downstream ZNF619 RPL14 40518604 40498783 + + 0.0 40528297 40509094 - + N - - N SA470 1 1.0 1.0 1 0 3 N Y 0.0 1.0 8 1.3215162564221898 0.82270864983146 1.3215162564221898 0.82270864983146 4 - - 0.991952469508833 HCT116-unstranded 10.0 1101311 CACTTCGTCCAAACCGTGGCCGTGGGGGATACAGAGGCAGAGGAGGTCTTGGTTTCCGTGGTGGCAGAGGGCGTGGTGGTGGCAGAGGTGGTACCTTCACTGCCCCTCGAGGATTTCGCGGTGGATTCAGAGGAGGTCGTGGGGGCCGGGAGTTTGCGGATTTTGAATATAG|GGAAAGGACTTAGAAGCCTTACAAATACATCTGTGCATTCTTGCTTCAGACTTTACAACTGAGGGCCAGCCCAGTCTGGAAGCATCTCTTATTAATGTTACAAGGAAACCGCTACCTCAGCAAACAAAAGGAATGGAGGAGGAGACTTACAACAAACGCCATTTAAAAAAAAAAGAAAAACTTGTTTTCAGGAAACAT 27 1.0 0.486989489950479 0.6360507703848199 Y Y 3.2708899988179203 3.71194601483159 3.2708899988179203 0 0.0 0.0 Y 0.0 N Y 4602 1249 ENSG00000257103 ENSG00000166398 + - 19 19 34720420 34846491 coding utr5p LSM14A KIAA0355 34663409 34745457 + + 0.0 34712643 34790584 + - N - - N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 28 1.15308771393701 1.20491188085552 1.20491188085552 1.15308771393701 4 - - 0.986468253716583 HCT116-unstranded 10.0 222156 TGGCCATGAGAGAACTTGTTAAAAAGGGTTTCAATCCACCTGTTCTTGTTTTTGTTCAGTCCATTGAAAGGGCTAAAGAACTTTTTCATGAGCTCATATATGAAGGTATTAATGTGGATGTTATTCATGCAGAGAGAACACAACAACAG|CTTCATGTTTCCTGTTGCAGGTGGGATAAGACCCCCTCAAGCAGGCCTGATGCCGATGCAGCAACAAGGATTTCCTATGGTCTCTGTCATGCAGCCTAATATGCAAGGCATTATGGGAATGAATTACAGCTCTCAGATGTCCCAAGGACCTATTGCTATGCAGGCAGGAATACCAATGGGACCA 19 0.854931541621368 0.8155183843453921 0.18631900883515 Y Y 3.50310029567438 3.55025006787687 3.50310029567438 0 0.9933086846441348 0.0 Y 0.00299401197604776 N Y 1011 1881 ENSG00000141141 ENSG00000006114 + - 17 17 36003493 35969544 coding coding DDX52 SYNRG 35969787 35874900 - - 0.0 35981443 35960450 - + N - - N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 15 0.900444900209235 1.03648333837034 1.03648333837034 0.900444900209235 4 - - 0.986185931109642 HCT116-unstranded 10.0 656404 CGGCATGCCGCAGGGCAGTGTGGGCCGGTGGGGGTGCGAAAAGAAATGCATTGTGGGGTCGCGTCCCGGTGGCGGCGGCGACGGCCCTGGCTGGATCCCGCAGCGGCGGCGGCGGCGGCGGTGGCAGGCGGAGAACAACAAACCCCGGAGCCGGAGCCAGGGGAGGCTGGACGGGACGGGATGGGCGACAGCGGGCGGG|GTGCACCCCCTGTGGATGTGCTCCGGGCCCTGAGGTTCCCCTCCCTCCCTGATGGTGTCCGGAGAGCGAAAGGCATCTGTCCAGCTGATGTGGCCTACCGAGTGGCACGACCTGCCCAGCTCAGTGCACCCACTCGCCAGCTTTTCCCAGGAGGATTTCCCAAAGATTTCTCTCTGCTGACTGTTGTCCGGACCCGCCCTGGTCTCCAAGCTCC 24 0.7995336443253059 0.40228896215659 0.33386715974123304 Y Y 2.71576358354965 3.2389640373349304 2.71576358354965 1 0.0 0.0 Y 0.0 N Y 925 2180 ENSG00000204231 ENSG00000204248 + - 6 6 33168630 33160276 coding coding RXRB COL11A2 33161365 33130458 - - 0.0 33168019 33157246 - + N - - N SA470 6 0.15841584158415806 1.11627906976744 1 1 3 Y Y 0.15841584158415806 0.0 43 1.30856021469256 1.33447229815182 1.33447229815182 1.30856021469256 4 - - 0.955314275271954 HCT116-unstranded 10.0 656405 GTGCTGACAGAGCTAGTGTCCAAAATGCGTGACATGAGGATGGACAAGACAGAGCTTGGCTGCCTGAGGGCAATCATTCTGTTTAATCCAGATGCCAAGGGCCTCTCCAACCCTAGTGAGGTGGAGGTCCTGCGGGAGAAAGTGTATGCATCACTGGAGACCTACTGCAAACAGAAGTACCCTGAGCAGCAGGGACGGT|GCACCCCCTGTGGATGTGCTCCGGGCCCTGAGGTTCCCCTCCCTCCCTGATGGTGTCCGGAGAGCGAAAGGCATCTGTCCAGCTGATGTGGCCTACCGAGTGGCACGACCTGCCCAGCTCAGTGCACCCACTCGCCAGCTTTTCCCAGGAGGATTTCCCAAAGATTTCTCTCTGCTGACT 8 0.841978794433131 0.9103917687733342 0.7842467330485029 Y Y 3.4048855493250496 3.2389640373349304 3.2389640373349304 0 0.0 0.0 Y 0.0 N Y 925 2180 ENSG00000204231 ENSG00000204248 + - 6 6 33168630 33160276 coding coding RXRB COL11A2 33161365 33130458 - - 0.0 33162722 33157246 - + N - - N SA470 1 0.0 1.0 1 0 3 N Y 0.0 0.0 5 1.16604375566664 1.1077415678833 1.16604375566664 1.1077415678833 4 - - 0.9932609216694972 HCT116-unstranded 10.0 656406 AAGGGCTTCTTCAAACGCACCATCCGCAAAGACCTTACATACTCTTGCCGGGACAACAAAGACTGCACAGTGGACAAGCGCCAGCGGAACCGCTGTCAGTACTGCCGCTATCAGAAGTGCCTGGCCACTGGCATGAAGAGGGAG|GGTGCACCCCCTGTGGATGTGCTCCGGGCCCTGAGGTTCCCCTCCCTCCCTGATGGTGTCCGGAGAGCGAAAGGCATCTGTCCAGCTGATGTGGCCTACCGAGTGGCACGACCTGCCCAGCTCAGTGCACCCACTCGCCAGCTTTTCCCAGGAGGATTTCCCAAAGATTTCTCTCTGCTGACTGTTGTCCGGACCCGCCCTGGTCTCCAA 7 1.0 0.301368713855047 0.258299417114833 Y Y 3.64656650855576 3.29127915838687 3.29127915838687 0 0.0 0.0 Y 0.0 N Y 925 2180 ENSG00000204231 ENSG00000204248 + - 6 6 33168630 33160276 coding coding RXRB COL11A2 33161365 33130458 - - 0.0 33165539 33157246 - + N - - N SA470 1 0.0 1.0 1 0 3 Y Y 0.0 0.0 10 0.932835004533309 1.24378000604441 1.24378000604441 0.932835004533309 4 - - 0.985320788050735 HCT116-unstranded 10.0 691492 AGCTGTACTCGTCCCGGCTCTCAGAGCCTGCGCTGGCCAGGGCCCGGGCACCCAGGGATTGCTGCTGCCCCAGGGCTCCCCGTGCCAGGGCTCCAGGCCGGCCCAGGCCTCGTAGGAGACACCACATGCTTCTATCTAGTCCAAGTCCTCTGATCCACGGAGGGGAATGAGATGACTCACTTCTCCCT|TAGGCCTTGTGATCACATCCACATTTTCAATAATTCGCCTGAAGGATGGTGGCATTTTGTTGAGAATTCTGTGCTGCAGAAATTCTTGAGCTTTATGAAACATCAAACCACCTCCCACCACTAGGATGGAGCTGTACATCTTCTTTTTGGTGTCGTCAGATGCT 9 0.22350030038383886 0.83402696166167 0.7793624673465469 N Y 3.37977631118074 3.714643996557141 3.37977631118074 0 0.0 0.0 Y 0.0 N Y 1031 840 ENSG00000016391 ENSG00000113812 - + 3 3 53880417 53916229 utr5p coding CHDH ACTR8 53850387 53901093 - - 0.0 53858094 53904009 + - N - 0.603401635741285 N SA470 1 0.0 1.0 1 0 1 Y N 0.0 0.0 8 1.327994277287 1.10126354701849 1.327994277287 1.10126354701849 4 - 11.25 0.973332444171362 HCT116-unstranded 10.0 951080 TTTTAGGATCTTCTATTTTCACAAAGAGGTGGCTGGAATTAGGCCGTTTATTTTCGTAGCTTGAACTTACAAGGATGGTTTCTTCAGTCTTTGTGAAAAATAGTATTTCAGTCTTCTCTATATTCAGAAAACTGAGCGATGACATCCTTGCTTCTT|CAATAATGTCTTTAACAAGTTTCTGAGTGGCAGCCATTCGAGGCTTTGGGATTTCCAGTTTTTCACACTCATGATCTGACTGATGACGGTGTCTATGAGCAACAGAAGAGTGACACTAGTTCATGTGTTTGTATAGCACTTAAACAGATATACAAAGTGTGAACAGCCTAAGTGATCAATCACCTCAGGCAAAAATTC 107 1.0 0.7221665349245441 0.569713781056396 N Y 3.60207067538885 3.71873223294673 3.60207067538885 0 0.993607800650054 0.0 Y 0.0 N N 419 3820 ENSG00000253598 ENSG00000104231 - + 8 8 82608409 82645138 coding coding SLC10A5 ZFAND1 82605842 82613569 - - 0.0 82607158 82627039 + - N - 1.61566812342433 N SA470 1 0.0 1.0 1 0 1 N N 0.0 0.0 18 0.984659171451826 0.958747087992567 0.984659171451826 0.958747087992567 4 - 36.7222222222222 0.990328944408777 HCT116-unstranded 10.0 615658 GTGTCGCCTTCTTGTCCGATGGCACTATCATAAGTGTGGACTCTGCTGGGAAGGTGCAGTTCTGGGACTCAGCCACTGGGACGCTTGTGAAGAGCCATCTCATCGCTAATGCTGACGTGCAGTCCATTGCTGTAGCTGAC|TCAAGTTCATCCGAGAAGTAACACCATATATCAAGAAGCCATCATTAGTATCAGATCTGCCGTGGGAAGGTGCAGCCCCCCAGTCACCAAGCTTTAGTGGCAGTGAGGACTCTGGTTCGCCAAAACACCAGAACAGCACCAAGGACAGGAAGATCATCCCTCTCAAAATGTGCTTTGCTGCTAGAAACCTAAGCATGCCGGATCTG 11 1.0 0.713347378998734 0.8420467798947472 Y Y 3.71145150129163 3.51377186168787 3.51377186168787 0 0.99287772745986 0.0 Y 0.0 N Y 7368 7300 ENSG00000141076 ENSG00000168807 + - 16 16 69202941 69342955 coding coding CIRH1A SNTB2 69165194 69221032 + + 0.0 69177292 69279505 + - N - 0.307157601516459 N SA470 1 0.0 1.0 1 0 3 Y Y 0.0 0.0 7 0.8356646915610891 0.997615213181455 0.997615213181455 0.8356646915610891 4 - 24 0.988685438798455 HCT116-unstranded 10.0 613651 CAGCCAGGCAATATGCTTCACCTCTTTACTGCCTCCTGCTGTACTGGTTGCCCCAAGCATGGCGTTGAGTTCAGCCAACACCTGTGGGAGGAGAGCCATTATGTTGGTGTGGATAGCTACGAACCAGGAGTGTGCTGTGGCTGTATCTTTGCAGCGTAGGATCAACGTGTTCCTGCTATCAGGAGAATGTAGCTCTATCAATC|AATGACTTGTCAATGATGCAGAACATGTAGGCATCATGGAGAAGGATGTGCATCGGTCTCTTGGGATGAAAACTGATGTGTGTGATAGGAGTATCCCTTTGGAGCCAAAGGTGGTGAAAGCCCTGCTTCTGGACAGTCCGGCTCCAATCTGTATACTGTTTGTCTGGGATG 4 1.0 0.618239810872359 0.78879744097589 Y Y 3.81401560385573 3.55760534744548 3.55760534744548 1 0.994167641325536 0.0 Y 0.0 N Y 7300 7368 ENSG00000168807 ENSG00000141076 - + 16 16 69342955 69202941 coding coding SNTB2 CIRH1A 69221032 69165194 + + 0.0 69293953 69199429 - + N - 9.66909289967393 N SA470 1 0.0 1.0 1 0 3 Y Y 0.0 0.0 6 1.29560417296293 0.952269067127752 1.29560417296293 0.952269067127752 4 - 135.833333333333 0.99034268150575 HCT116-unstranded 10.0 608382 CTCATTCGGACCAGCAGGTATTTGAGTACAGCATCCCAGACAAACAGTATACAGATTGGAGCCGGACTGTCCAGAAGCAGGGCTTTCACCACCTTTGGCTCCAAAGGGATACTCCTATCACACACATCAGTTTTCATCCCAAGAGACCGATGCACATCCTTCTCCATGATGCCTACATGTTCTGCATCATTGACAAGTCATT|GTCAAGTTCATCCGAGAAGTAACACCATATATCAAGAAGCCATCATTAGTATCAGATCTGCCGTGGGAAGGTGCAGCCCCCCAGTCACCAAGCTTTAGTGGCAGTGAGGACTCTGGTTCGCCAAAACACCAGAACAGCACCAAGGACAGGAAGATCATCCCTCTCAAAATGTGCTTTGCTGCTAGAAACCTAAGCATGCCGGATCTGGAAAACAG 40 0.967706667995966 0.4470025670819889 0.589844287857019 Y Y 3.55760534744548 3.51377186168787 3.51377186168787 1 0.9950613482400872 0.0 Y 0.0 N Y 7368 7300 ENSG00000141076 ENSG00000168807 + - 16 16 69202941 69342955 coding intron CIRH1A SNTB2 69165194 69221032 + + 0.0 69199429 69279505 + - N - 0.307581231612108 N SA470 1 0.0 1.0 1 0 3 Y Y 0.0 0.0 47 1.3150382355573702 1.42516459025922 1.42516459025922 1.3150382355573702 4 - 3.57446808510638 0.9909758426747808 HCT116-unstranded 10.0 796022 CACGTAGCAGTAGATGAGCTCGTGGTCCTCATCCACCACCAAGTGCTTCAGGTCGTTGGGGGTCAGCACCCTCCGCTTACGGCTTGTGGCGCTGTTGGCTCGGCACGTGTCTGTCACCTGGTCCCGCCGCATCTGGTGCAGGACAGCAGTGTTTGAGAGCTCCAGCTGGATTGGGTTGTAGAGTTCCTGCAGGGGGCTTCGGGACCCCTTCCGGCAGCAGATGTCCACACCAAAGGGATTCCTCCGCATGA|CTGTATCAGGATCTCAACTAGTTCAAATGCAATTTCTGAACACTTTCAATTTGTCATTTCACAAAGGCATGATTTTCAGCGTGGTGCTTAATTTTGACCCAAATCAGGTTCATGCAATTCCACCAAGGTTTTTCTTGAGATGTTCAGGTCACTGTCCAAGTAGTTCTCAAAGGAAATGTCAATTTTTACTTAT 14 0.493232466403059 0.8937861071548009 0.6791750829165991 Y Y 3.59681204058356 3.51782959285392 3.51782959285392 1 0.0 0.0 Y 0.00741689468475293 N N 4917 26009 ENSG00000171310 ENSG00000198431 - + 12 12 105155792 104744061 coding downstream CHST11 TXNRD1 104849073 104609557 + + 0.0 104995684 104781762 - + N - - N SA470 1 0.0 1.0 1 0 3 N Y 0.0 0.0 10 1.4445986528536698 1.19843385999071 1.4445986528536698 1.19843385999071 4 - - 0.9937791697056568 HCT116-unstranded 10.0 796169 TAACAACAAATGTTATGCAAAAATAATCTGTAATACTAAAGACAATGAACGTGTTGTGGGCTTTCACGTACTGGGTCCAAATGCTGGAGAAGTTACACAAGGCTTTGCAGCTGCGCTCAAATGTGGACTGACCAAAAAGCAGCTGGACAGCACAATTGGAATCCACCCTGTCTGTGCAGAG|AGGTGCCAGAGAGATGCAAATGGCAGCGCCAGTCCTTGGAGGAGCCAGTCTGGGGCCCCTGGCTGATGTTGGCAGAAGACACATCCCTCTCTCCCTTCAAGGATGCTGAAGAGCTCTCTGTCTACTAGTACCCTGGGCCCACTTTTCTCTCCA 4 0.938123576722398 0.466398233936494 0.5637371386518921 Y Y 3.63721963736088 3.49272035470961 3.49272035470961 0 0.0 0.0 Y 0.0 N N 26009 4917 ENSG00000198431 ENSG00000171310 + - 12 12 104744061 105155792 coding upstream TXNRD1 CHST11 104609557 104849073 + + 0.0 104733051 104847460 + - N - - N SA470 1 0.192307692307692 1.0 1 0 3 N Y 0.0 0.192307692307692 5 0.8356646915610891 0.8421427124259041 0.8421427124259041 0.8356646915610891 4 - - 0.992612272614827 HCT116-unstranded 10.0 382314 AAGGGAGCATACAGAGAGCACCCATATGGACGTTATTAAAAACAAACATGAGGGGAAAATATCAGTTATGAGCAAAGTTGTTACTGATTTCTTGTATCTCCCAGGATTCCTGTTGCTTTACCCACAACAGACAAGTGACTGAAAACTCCTGAGGCATTTCCTGGACTAGAATGGGTAGTGAAGACCCATGTCAG|GTTTGGGATGTACATTCCGTTCCTGCAGCTGAATTGCGACCTCCGCAAGACAAGCCTCTTCAACCACATGGCCTCCATGGGGCCCCGGGAGGCGGTCAGTGGCCTGGCAAAGAGCCGGGACTACCTCCTGACACTGCGGGAGACGTGGAA 13 1.0 0.551358674244672 0.6102103527743891 Y Y 3.53871326596283 3.716171579866991 3.53871326596283 0 0.993352657004831 0.0 Y 0.0 N Y 27771 1615 ENSG00000121774 ENSG00000121775 + - 1 1 32526451 32568467 intron coding KHDRBS1 TMEM39B 32479430 32537632 + + 0.0 32510991 32557276 + - N - - N SA470 1 0.0 1.0 1 0 3 Y Y 0.0 0.0 7 1.18547781826108 0.926356983668494 1.18547781826108 0.926356983668494 4 - - 0.992612272614827 HCT116-unstranded 10.0 381753 GGAGCATACAGAGAGCACCCATATGGACGTTATTAAAAACAAACATGAGGGGAAAATATCAGTTATGAGCAAAGTTGTTACTGATTTCTTGTATCTCCCAGGATTCCTGTTGCTTTACCCACAACAGACAAGTGACTGAAAACTCCTGAGGCATTTCCTGGACTAGAATGGGTAGTGAAGACCCATGTCAG|GAGGACGAAGAGGTCCCAACAGGACATCTTACTGTCGAAATCCGCTCTGTGAGCCGGGATCCTCGGGGGGCTCTAGTGGAAGCCACACTTCCAGTGCATCGGTGACCAGTGTTCGTTCCCGCACCAGGAGCAGTTCTGGAACAGGCCTCTCCAGCC 23 0.572094569695764 0.390075711758216 0.474869459164072 Y Y 3.53871326596283 3.56488607910057 3.53871326596283 0 0.993608163866785 0.0 Y 0.0 N Y 27771 1615 ENSG00000121774 ENSG00000121775 + - 1 1 32526451 32568467 intron coding KHDRBS1 TMEM39B 32479430 32537632 + + 0.0 32510991 32540552 + - N - - N SA470 1 0.0 1.0 1 0 3 N Y 0.0 0.0 18 1.15956573480182 1.03000531750553 1.15956573480182 1.03000531750553 4 - - 0.989111948034816 HCT116-unstranded 10.0 377232 GAAGAGGAGGAGGAACAGGAGCAACAAAGAGATGATGCGGAAGAGTCTTCCTCGGAGCCTGAGGAGGAAAATGTGGGAAACGACACCAAAGCCGTTATTAAAGCACTGGATGAGAAGATTGCCAAATATCAGAAGTTTCTAGACAAAGCCAAAGCCAAAAAGTTTTCAGCAGTCAG|CCAAAATCACAGAATGAAGGCGGTGAAGAGCGAACGGGAGCGAGGGAGCCGGCGAAGACACCGGGACGGGGACGTGGTGCTGCCGGCGGGGGTGGTGGTGAAGCAGGAGCGTCTCAGCCCAGAAGTCGCACCTCCCGCCCACCGCCGTCCGGACCACTCCGGTGGTAGCCCGTCTCCGCCGACCAGCGAGCCGGCCCGCTCGGGCCACCGCGGGAACCGAGCC 51 0.10123768694659804 0.8447449319120601 0.751206964052766 N Y 3.03276290964348 3.35041100277749 3.03276290964348 0 0.0 0.0 Y 0.0 N N 4295 5577 ENSG00000134697 ENSG00000163877 + - 1 1 38061536 38019903 coding utr5p GNL2 SNIP1 38032417 38002142 - - 0.0 38034452 38019843 - + N - 1.78187644218341 N SA470 1 0.0 1.0 1 0 1 Y N 0.0 0.0 51 1.60007115360922 1.47698875717774 1.60007115360922 1.47698875717774 4 - 6.90196078431373 0.935739879751748 HCT116-unstranded 10.0 375745 CCAAATATCAGAAGTTTCTAGACAAAGCCAAAGCCAAAAAGTTTTCAGCAGTCAG|CCAAAATCACAGAATGAAGGCGGTGAAGAGCGAACGGGAGCGAGGGAGCCGGCGAAGACACCGGGACGGGGACGTGGTGCTGCCGGCGGGGGTGGTGGTGAAGCAGGAGCGTCTCAGCCCAGAAGTCGCACCTCCCGCCCACCGCCGTCCGGA 47 2.49622254294661e-06 0.657706710952044 0.814078214400228 N Y 3.03276290964348 3.35041100277749 3.03276290964348 0 0.0 0.0 Y 0.0 N N 4295 5577 ENSG00000134697 ENSG00000163877 + - 1 1 38061536 38019903 coding utr5p GNL2 SNIP1 38032417 38002142 - - 0.0 38034452 38019843 - + N - - N SA470 1 0.0 1.0 1 0 1 Y N 0.0 0.0 8 0.699626253399981 0.7838405246425719 0.7838405246425719 0.699626253399981 4 - - 0.920060118311252 HCT116-unstranded 10.0 376597 GGCTCGCTGGTCGGCGGAGACGGGCTACCACCGGAGTGGTCCGGACGGCGGTGGGCGGGAGGTGCGACTTCTGGGCTGAGACGCTCCTGCTTCACCACCACCCCCGCCGGCAGCACCACGTCCCCGTCCCGGTGTCTTCGCCGGCTCCCTCGCTCCCGTTCGCTCTTCACCGCCTTCATTCTGTGATTTTGG|CTGACTGCTGAAAACTTTTTGGCTTTGGCTTTGTCTAGAAACTTCTGATATTTGGCAATCTTCTCATCCAGTGCTTTAATAACGGCTTTGGTGTCGTTTCCCACATTTTCCTCCTCAGGCTCCGAGGAAGACTCTTCCGCATCATCTCTTTGTTGCTCCTGTTCCTCCTCCTCTTCATCAGAAAAGCTCTCAAGCTCTTCCTCAAGATCTGACACCTCCAC 51 0.47457811771666 0.8447449319120601 0.751206964052766 N Y 3.35041100277749 3.03276290964348 3.03276290964348 0 0.0 0.0 Y 0.0 N N 5577 4295 ENSG00000163877 ENSG00000134697 - + 1 1 38019903 38061536 utr5p coding SNIP1 GNL2 38002142 38032417 - - 0.0 38019843 38034452 + - N - 0.529487134605286 N SA470 1 0.0 1.0 1 0 1 Y N 0.0 0.0 16 1.17899979739626 1.47051073631292 1.47051073631292 1.17899979739626 4 - 22.5625 0.961312755686501 HCT116-unstranded 10.0 656505 GAAAACAACTTAAAAGACCCTGGGGGCTCCGAGTTCGACTCGATCAGCAAAAACACATGGGCTCCTGCTCCTGACACATGGGCTCCTGCTCCTGACCAAACTGAGCAAGACCAGAATAGACTGTCACAGAACTCTGTAAATCTGTCTCCCAGCAGTCACGCAAACAACTTATCAGTAGTGACTTACAGTAAG|ACACAGCCGCCAGCCCAAACAGCAGCGGCATGGGCAGCGCCAGCCCGGGTCTGAGCAGCGTATCCCCCAGCCACCTCCTGCTGCCCCCCGACACGGTGTCGCGGACAGGCTTGGAGAAGGCGGCAGCGGGGG 12 0.8359486512953709 0.29300880536622803 0.334406941149307 N Y 3.47080361183081 2.8172013303880203 2.8172013303880203 1 0.992447552447552 0.0 Y 0.0 N Y 2762 192 ENSG00000196821 ENSG00000124664 + - 6 6 34664636 34524110 coding utr5p C6orf106 SPDEF 34555065 34505579 - - 0.0 34574332 34512261 - + N - - N SA470 1 0.0 1.0 1 0 1 N N 0.0 0.0 7 0.8356646915610891 0.563587815238874 0.8356646915610891 0.563587815238874 4 - - 0.9526067989195268 HCT116-unstranded 10.0 221205 ATGTTGGCGGCCTCTTCATCTTGGAACAGGGCTTGGACCTGCTGCAGGTTGCCGGAGAAGAGGGCTTGGTGGACAGCTGGGTCTCGGCAGGAACGGTGAGGCCTAGTGAGTCGGGCCCGGGGACTTGACGGGCACCTGCGGCTCCGGCACTGCTGGGCAGCCGCCCGCCGCCGGTCCTCCCATTCCAGCCACTCCTGCTG|GTGAGGCAGGATCCCAGCTGGGCCAGGGAAACGGCGAGTTTTGGCTCGGGTGGAGGGATGGGTGGGCTGCTGGGGTGTCCGGCTGGCAGCAGTGACTAGCTGCACCAGGTGGTTGGTGACTATGGGTGTCTGCAGAGCTCCCTGGGGACCTTTTGGGGTACCAACAGGAGACCCAATGGAAGACACT 13 1.0 0.217699856641444 0.4649539737058371 Y Y 3.19656484893134 3.4106386976703 3.19656484893134 1 0.0 0.0 Y 0.0 N Y 772 1359 ENSG00000161664 ENSG00000125319 - + 17 17 42256451 42239844 coding coding ASB16 C17orf53 42247815 42219274 + + 0.0 42248215 42226395 - + N - 8.70104345883256 N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 17 1.3150382355573702 1.25025802690923 1.3150382355573702 1.25025802690923 4 - 1.05882352941176 0.909028855718568 HCT116-unstranded 10.0 4862 CTTCCAGTTTCCAGTTCCGGCCTCCAAGGGGCGGGCAGAAGTTGGAAACATGCGGCTGTCGGTCGCTGCAGCGATCTCCCATGGCCGCGTATTTCGCCGTATGGGCCTCGGTCCCGAGTCCCGCATCCATCTGTTGCGGAACTTGCTCACAGGGCTGGTGCGGCACGAACGCATCGAGGCACCATGGGCGCGTGTGGACGAAATGAGGGGCTACGCGGAGAAG|GTCAGGGAGCCTGAGCTGGAGCCAGGGCCCCAGTGGGACCTGACCCAAAGTCTGAGGTCAAGCTGGGCCCAGAGCCTGGCCTGGAGCTGGAGCCCAAGGCACAGCTGGACTACCCTTGTCATGCAGAAGGAGCTGGGCATTGTGCCTTCCTGCCCTGGCATGAAGAGCCCCAGGCCCCACCTCCTGCTACCATTGCTGCTGCTGCTGCTGCTGCTGCTGGGGGCTGGG 85 0.472041937193779 0.440188821313768 0.637930870554287 Y Y 3.24847874239915 3.08615095325867 3.08615095325867 1 0.0 0.0 Y 0.0 N Y 4727 9319 ENSG00000158042 ENSG00000166341 + - 11 11 6704632 6677085 coding utr5p MRPL17 DCHS1 6702013 6642556 - - 0.0 6704354 6662964 - + N - - N SA470 1 0.15450643776824 1.0 1 0 1 Y Y 0.0 0.15450643776824 66 1.42516459025922 1.50937886150181 1.50937886150181 1.42516459025922 4 - - 0.926003094117625 HCT116-unstranded 10.0 5333 CTGTTGCGGAACTTGCTCACAGGGCTGGTGCGGCACGAACGCATCGAGGCACCATGGGCGCGTGTGGACGAAATGAGGGGCTACGCGGAGAAG|GTCAGGGAGCCTGAGCTGGAGCCAGGGCCCCAGTGGGACCTGACCCAAAGTCTGAGGTCAAGCTGGGCCCAGAGCCTGGCCTGGAGCTGGAGCCCAAGGCACAGCTGGACTACCCTTGTCATGCAGAAGGAGCTGGGCATTGTGCCTTCCTGCCCTGGCATGAAGAGCCCCAGGCCCCACCTCCTGCTACCATTGCTGCTGCTGCTGCTGCTGCTGCTGGGGGC 85 0.0155325196968948 0.440188821313768 0.637930870554287 Y Y 3.24847874239915 3.08615095325867 3.08615095325867 0 0.0 0.0 Y 0.0 N Y 4727 9319 ENSG00000158042 ENSG00000166341 + - 11 11 6704632 6677085 coding utr5p MRPL17 DCHS1 6702013 6642556 - - 0.0 6704354 6662964 - + N - 53.7035954574518 N SA470 1 0.161434977578475 1.0 1 0 2 Y Y 0.0 0.161434977578475 6 0.945791046262938 1.41220854852959 1.41220854852959 0.945791046262938 4 - 1.16666666666667 0.9730871788825608 HCT116-unstranded 10.0 365736 TAGGGAAGCAATAGTCCTTGTCAGGAAGGTCCAGGAGGTGGCAGAAGCGGGTACCGTCCCTTCCATGAGACTCCTGGAGGCCGCGGTCATTGGTCAGCAGGGAAATGGCTGAGTGACAGTTAGAATGGAAGGCAGAGCAGTAATCAGAGCAGAGGCCCGGGAGATTCCGGAGAGGCGTCTGGGTGTTTTCGGCGTCGTAGAGGTGGGCTGCGTAGGGCGAGCACT|CCAAGCTTTGACAATTCCATCTTCTTTTCAGACCAGGTATAATACTGTAAAAGCCCTTTATAGGCCTGAATAAGGTTGATTAATATTTCCCGGGAAGACGTATTTTCACCATGTCTCCATGTCTCTGCCTCACTCAGATTTCTCTTAGCATCTTTAAGCATTCCATGATGCAGAAGGTATAATGCATGTTGTAA 48 0.822104970632523 0.924117701389532 0.626909110587145 Y Y 3.3603897161581404 3.57233464462502 3.3603897161581404 3 0.0 0.00238095238095226 Y 0.00238095238095226 N Y 392 682 ENSG00000143512 ENSG00000143498 - + 1 1 222721445 222763275 coding intron HHIPL2 TAF1A 222695602 222731244 - - 0.0 222717531 222750787 + - N - 0.308738836486358 N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 48 1.51585688236663 1.3215162564221898 1.51585688236663 1.3215162564221898 4 - 1.33333333333333 0.99354510197356 HCT116-unstranded 10.0 914396 TGAAACGGAAATCGGACAGAAAGCCTTTGCGGGGAGGAG|AACATGGTCCAAGACAATTCCTGGGAAAGTTCAGTTCTTCTCAAGTGAGGGTTCTGACACATCTGTACCAATTCCAGTAGTGCCACTACGGGGTGTGGACGACTCCTACCCGCCCCAGAAGAAGTCCTTCATGATGCTCAAGTACATGCACGACCACTACTTGGACAAGTATGAATGGTTTATGAGAGCAGATGATGACGTG 52 0.00223904837664257 0.32552443236377504 0.953249214887736 Y Y 3.2250636173828298 3.49847350305486 3.2250636173828298 0 0.0 0.0 Y 0.0 N Y 3880 7866 ENSG00000131871 ENSG00000131873 + - 15 15 101817705 101792137 coding coding VIMP CHSY1 101811022 101715928 - - 0.0 101814625 101775782 - + N - - N SA470 2 0.0 1.2 1 1 2 N Y 0.0 0.0 5 0.5571097943740589 0.816230628966645 0.816230628966645 0.5571097943740589 4 - - 0.943333781843066 HCT116-unstranded 10.0 914426 CTGCTCTCATAAACCATTCATACTTGTCCAAGTAGTGGTCGTGCATGTACTTGAGCATCATGAAGGACTTCTTCTGGGGCGGGTAGGAGTCGTCCACACCCCGTAGTGGCACTACTGGAATTGGTACAGATGTGTCAGAACCCTCACTTGAGAAGAACTGAACTTTCCCAGGAATTGTCTTGGACCATGTTCT|CCTCCCCGCAAAGGCTTTCTGTCCGATTTCCGTTTCAGGACAGATGAAGTGGAAGGCCCAGGACTGTCTTCCTCCTGTTTGAACACACACAGTAGTGTAAGAAGCAATTAAAACATTCTACTTGGCAATCTTCATCTACCGCATGCCAGCCGGCCGAGGTCTCCAGTCACCTGGGGCTTCTTTGC 111 1.0 0.8850582439524491 0.800993621171457 Y Y 3.5203902459336605 3.33896748681929 3.33896748681929 0 0.0 0.0 Y 0.0 N Y 7866 3880 ENSG00000131873 ENSG00000131871 - + 15 15 101792137 101817705 coding coding CHSY1 VIMP 101715928 101811022 - - 0.0 101775782 101814625 + - N - 3.47088857170657 N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 33 1.24378000604441 1.00409323404627 1.24378000604441 1.00409323404627 4 - 26.5151515151515 0.992455626252426 HCT116-unstranded 10.0 914395 TTGAAGAAGAAAAAAGGAGACAGAAGATTGAAATGTGGGACAGCATGCAAGAAGGAAAAAGTTACAAAGGAAATGCAAAGAAGCCCCAGGAGGAAGACAGTCCTGGGCCTTCCACTTCATCTGTCCTGAAACGGAAATCGGACAGAAAGCCTTTGCGGGGAGG|AGAACATGGTCCAAGACAATTCCTGGGAAAGTTCAGTTCTTCTCAAGTGAGGGTTCTGACACATCTGTACCAATTCCAGTAGTGCCACTACGGGGTGTGGACGACTCCTACCCGCCCCAGAAGAAGTCCTTCATGATGCTCAAGTACATGCACGACCACTACTTGGACAAGTATGAATGGTTTATGAGAGCAGATGATGACGTGTACATCAAAGGAGACCGTCTGGAGAACTTCCTGAGGAGTTTGAAC 111 1.0 0.8850582439524491 0.800993621171457 Y Y 3.33896748681929 3.5203902459336605 3.33896748681929 0 0.0 0.0 Y 0.0 N Y 3880 7866 ENSG00000131871 ENSG00000131873 + - 15 15 101817705 101792137 coding coding VIMP CHSY1 101811022 101715928 - - 0.0 101814625 101775782 - + N - - N SA470 2 0.0 1.02380952380952 1 2 2 N Y 0.0 0.0 84 1.09478552615367 1.60654917447403 1.60654917447403 1.09478552615367 4 - - 0.9932609216694972 HCT116-unstranded 10.0 162925 ACAGATGTAGGTGATATTAAAATTGAAGTCTTCTGTGAGAGGACACCCAAAACATGTGAGGAACTGGAAGAGGAGGCAACAGTATTTGGGGCAAGAAGTTTGAGGATGAATACAGTGAATATCTTAAGCACAATGTTAGAGGTGTTGTATCTATGGCTAATAATGGCCCGAACACCAATGGATCTCAGTTCTTCATCACCTATGGCAAACAGCCACATTTGGACATGAAATACACCGTATTTGGAAA|ATGAGACACTCAAAGAGAACTTACTGTCCTGATTGGGATGACAAGGATTGGGATTATGGAAAATGGAGGAGCAGCAGCAGTCATAAAAGAAGGAAGAGATCACATAGCAGTGCCCAGGAGAACAAGCGCTGCAAATACAATCACTCTAAAATGTGTGATAGCCATTATTTGGAAAGCAGGTCT 7 0.7343290009489399 0.267574485653665 0.782587937593415 Y Y 3.37192651807217 3.45976132345673 3.37192651807217 0 0.0 0.0 Y 0.0 N Y 1672 1906 ENSG00000240344 ENSG00000013441 + - 2 2 201754026 201729422 coding coding PPIL3 CLK1 201735630 201717732 - - 0.0 201741642 201726585 - + N - - N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 9 1.24378000604441 1.19843385999071 1.24378000604441 1.19843385999071 4 - - 0.944542414468136 HCT116-unstranded 10.0 164793 AACTGGAAGAGGAGGCAACAGTATTTGGGGCAAGAAGTTTGAGGATGAATACAGTGAATATCTTAAGCACAATGTTAGAGGTGTTGTATCTATGGCTAATAATGGCCCGAACACCAATGGATCTCAGTTCTTCATCACCTATGGCAAACAGCCACATTTGGACATGAAATACACCGTATTTGGAAA|AGTTCAAAAACTATCAGTGAGTGGGGACAACACGCCGACGGCTTCCTTTCATCCGCCACAGCGGGCTCTGGTTCCCTCCCTGGCGCCTGCGCCCACGATGGTCGCGCGCGCGACACGCCCGCCCTTTCCGCCTGCTCGCCCCGTGCATGACCCGCCCCGCGGCGGAGACGCGC 4 0.974876215191443 0.490184179689511 0.080166679336185 Y Y 3.37192651807217 3.61257440753299 3.37192651807217 1 0.0 0.0 Y 0.0 N N 1672 1906 ENSG00000240344 ENSG00000013441 + - 2 2 201754026 201729422 coding upstream PPIL3 CLK1 201735630 201717732 - - 0.0 201741642 201729609 - + N - - N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 6 1.09478552615367 1.00409323404627 1.09478552615367 1.00409323404627 4 - - 0.9775239364318872 HCT116-unstranded 10.0 796269 GACCAGCTACCAGCTCTCTGCTGGTTACTCACGATGGCCCTCGGTGACATCCCAGGAATGGGTCTTCCAGATGCTATCGCGACAGAACAATTACACCGTCAACAACAAGAGAAATGGAGTGGCCAAAGTCAACATCTTCTTCAAGGAGCTGAACTACAAAACCAATTCTGAGTCTCCCTCTGTCAC|GGTGCTCCTGGAGCTGTTGGTGGGAATATACCCCTCAGGGGTTATTGGACTGGTCCCTCACCTAGGGGACAGGGAGAAGAGAGATAGTGTGTGTCCCCAAGGAAAATATATCCACCCTCAAAATAATTCGATTTGCTGTACCAAGTGCCACAAAGGAACCTACTTGTACAATGACTGTCCAGGCC 8 0.931259172597014 0.8131696160011209 0.7400815512260122 N Y 3.45976132345673 3.52680574168821 3.45976132345673 0 0.994609125254287 0.0 Y 0.0 N Y 8699 10650 ENSG00000111319 ENSG00000067182 + - 12 12 6486896 6451280 coding coding SCNN1A TNFRSF1A 6456009 6437923 - - 0.0 6457893 6443410 - + N - - N SA470 1 0.0 1.0 1 0 1 Y N 0.0 0.0 13 1.16604375566664 1.14013167220738 1.16604375566664 1.14013167220738 4 - - 0.9942315411823952 HCT116-unstranded CGHSA0430 10.0 379225 CTACAGCATGACTTGTCCTGGACTCCGTATGAGGACATTGAGAAGCAAGATGCTAAAATCAGCATGATGGACACGTTGCTAAGCCAGTCAGTGGCCCTGCCTCCGTGCACTGAACCCAACTTCCAGGGACTGACTCACTGAGAGTGGGCTTTGACAAACAGCTCTCACAGGACCTGGCTGTCAACCTCCTTGTTGCCCCCACTGTTGCCTTGAGAATTGAAGACATG|CCTTCCTGATGCGCTTGCCTGCTCCCTGGTCTCTCTGCATGGGGAAGGAGTGTTCCCAGCTTGCAAACTCCAGCTTTGCCTGTGAGAGGAACAAGCGTCCCTGATCCAGAAGGTGGTGAGTCCTCCTCTCTCTCTTCATGCTTTTTAGTCCTTTAACTTTCTCAGGATCCTCAGGTTTAGTAGAGAAATAATCCCCTTTCTCCTTACGCACAAG 23 0.962394836313442 0.7198333028596899 0.555912349349623 Y Y 3.32163768376666 3.11761290642523 3.11761290642523 0 0.0 0.0 Y 0.0 N Y 768 1983 ENSG00000164008 ENSG00000164010 + - 1 1 43264127 43310660 utr5p utr5p C1orf50 ERMAP 43232940 43282795 + + 0.0 43241150 43291294 + - N 6.57554101426728 0.038047433225416 N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 10 1.45107667371848 1.29560417296293 1.45107667371848 1.29560417296293 4 11 0.8 0.974640301138982 HCT116-unstranded 10.0 166882 TTCCCTCGTCACACCAATGCCAGTGCTCGAGACAACACCATCAACCTGATCCACACGTTCCGGGACTACCTGCACTACCACATCAAGTGCTCTAAGGCCTATATTCACACACGTATGCGGGCGAAAACGTCTGACTTCCTCAAGGTGCTGAACCGCGCACGCCCAGATGCCGAGAAAAAAGAAATGAAAACAATCACG|CATGCCGGCTGCCGCTCCAGGACTCCCCTGTCCCCAGGACCAAGATGACGCCCAACAGCACTGGCGAGGTGCCCAGCCCCATTCCCAAGGGGGCTTTGGGGCTCTCCCTGGCCCTGGCAAGCCTCATCATCACCGCGAACCTGCTCCTAGCCCTGGGCATCGCCTGGGACCGCCGCCTGCGCAGCCCACCTGCTGGCTGCTTCTTCCTGAGCCTA 19 0.97809053414646 0.597285335203887 0.606550404849593 N Y 3.04277212824767 3.40740634961144 3.04277212824767 1 0.0 0.0 Y 0.0 N Y 17806 1566 ENSG00000163466 ENSG00000179921 + - 2 2 219119079 219128582 coding utr5p ARPC2 GPBAR1 219081817 219124219 + + 0.0 219114644 219127403 + - N - - N SA470 1 0.0 1.0 1 0 4 N N 0.0 0.0 15 1.21138990172034 1.28912615209811 1.28912615209811 1.21138990172034 4 - - 0.980554975803131 HCT116-unstranded 10.0 162996 TTGTGCTGTTCCCTCGTCACACCAATGCCAGTGCTCGAGACAACACCATCAACCTGATCCACACGTTCCGGGACTACCTGCACTACCACATCAAGTGCTCTAAGGCCTATATTCACACACGTATGCGGGCGAAAACGTCTGACTTCCTCAAGGTGCTGAACCGCGCACGCCCAGATGCCGAGAAAAAAGAAATGAAAACAATCAC|AGACGGAGTCTCACCACGTTGCCCAGGCCTCAGCCTCTTAAAGTGCTAGGATTACAGGCATTGAGTGTGAAGTGTTGAACAGCGGCTCAGGGAGGCCAACCAGGGTCCAGCAAACCCCGTCCCTGCTGCCTCCATTGGTCCAGAGCTGGTACCCGCAGCCAGCATGACACTCACCCAGTCCCAGACATTGTGGGTCAACAGAGAGAAATTCAG 19 0.8610348760540191 0.6659135505925401 0.8105826656890841 N Y 3.0302022565637405 3.62398741826765 3.0302022565637405 0 0.0 0.0 Y 0.0 N N 17806 1566 ENSG00000163466 ENSG00000179921 + - 2 2 219119079 219128582 coding upstream ARPC2 GPBAR1 219081817 219124219 + + 0.0 219114644 219123510 + - N - - N SA470 1 0.2 1.0 1 0 4 N N 0.0 0.2 13 1.33447229815182 1.23082396431478 1.33447229815182 1.23082396431478 4 - - 0.974675753065639 HCT116-unstranded 10.0 615148 GCGGCGGGCGCAGACAGCGGCGGGCGCAGGACGTGCACTATGGCTCGGGGCTCGCTGCGCCGGTTGCTGCGGCTCCTCGTGCTGGGGCTCTGGCTGGCGTTGCTGCGCTCCGTGGCCGGGGAGCAAGCGCCAGG|GCTGTAAGGAGCTGTGGCGTCGTCAGCCTCCATACAGGACCAGCCTGGAAGTGCCTGAGATCAACGCTTTGCTGCTGGTCCCCAAGGAGAATTCCCTCATCCTGGCTGGGGGAGACTGTCAGTTGCACACTATGGACCTTGAAACTGGGACTTTCACGAGGGTCCTCCGGGGCCACACAGACTACATCCACTGCCTGGCACTGCGGGAAAG 1 0.6549413574491129 0.465316988207811 0.5576745465727939 Y Y 3.3363135477837096 3.80400638525155 3.3363135477837096 0 0.0 0.0 Y 0.00289017341040465 N Y 4902 3474 ENSG00000006327 ENSG00000131652 + - 16 16 3072384 3077756 coding coding TNFRSF12A THOC6 3068446 3074028 + + 0.0 3070492 3076252 + - N - - N SA470 1 0.0277777777777778 1.0 1 0 4 N Y 0.0277777777777778 0.0 6 0.699626253399981 1.0170492757759 1.0170492757759 0.699626253399981 4 - - 0.994090006793282 HCT116-unstranded 10.0 614459 CCTGCCGGCCGGCGGCGGGCGCAGACAGCGGCGGGCGCAGGACGTGCACTATGGCTCGGGGCTCGCTGCGCCGGTTGCTGCGGCTCCTCGTGCTGGGGCTCTGGCTGGCGTTGCTGCGCTCCGTGGCCGGGGAGCAAGCGCC|AGACAGAGGTGTTCCAGGCCTTGCAGCGGCTCCATATGACCATCTTCTCCCAGAGCGTCTCACCATGTGGGAAGTTTCTGGCGGCTGGCAACAATTACGGGCAGATTGCCATCTTCAGGTACCCTCTGCCGCTGTCCACCCATTAGCCCTGGCACTTGGCCCTCATGGGACGGATGCCCCCGTTTCTGACTCCTGGGTCCCCTC 14 0.868425763200193 0.9216334560584292 0.565583811137362 Y Y 3.27145906027139 3.782089642372741 3.27145906027139 0 0.0 0.0 Y 0.0 N Y 4902 3474 ENSG00000006327 ENSG00000131652 + - 16 16 3072384 3077756 coding intron TNFRSF12A THOC6 3068446 3074028 + + 0.0 3070492 3075709 + - N - 0.760778151463656 N SA470 1 0.132867132867133 1.0 1 0 4 Y Y 0.132867132867133 0.0 60 0.926356983668494 1.30208219382774 1.30208219382774 0.926356983668494 4 - 8.61666666666667 0.994848257334812 HCT116-unstranded 10.0 693798 CAAGACAAAGATTTTGGCCACAGGAGGAGCATCTCACAATAGAGAAATCTTACAGGTGCTTGCAGATGTGTTTGATGCCCCGGTGTATGTTATAGACACTGCCAACTCGGCCTGTGTGGGTTCTGCATACCGAGCTTTTCATGGTCTTGCAGGTGGAACAGATGTGCCCTTTTCAGAGGTTGTGAAGTTAGCTCCAAATCCCAGACTAGCTGCTACCCCAAGCCCGGGAGCTTCTCAG|GCTCTGGGCGTGGGGAGGCTGAGACACGGGAGTGCATCTACTACAACGCCAACTGGGAGCTGGAGCGCACCAACCAGAGCGGCCTGGAGCGCTGCGAAGGCGAGCAGGACAAGCGGCTGCACTGCTACGCCTCCTGGCGCAACAGCTCTGGCACCATCGAGCTCGTGAAGAAGGGCTGCTG 6 0.7853645005499549 0.755757661060103 0.34923071765096503 Y Y 3.3400005565891804 3.38230645903694 3.3400005565891804 0 0.0 0.0 Y 0.00789265982636145 N Y 666 703 ENSG00000093217 ENSG00000114739 + - 3 3 38462839 38524948 coding coding XYLB ACVR2B 38388251 38495342 + + 0.0 38442476 38518778 + - N - 0.0312278760527957 N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 10 1.14013167220738 1.11421958874812 1.14013167220738 1.11421958874812 4 - 5.5 0.988659864702272 HCT116-unstranded 10.0 693952 CGAGGAAATCCATTGGTTGTTCGTTTTGTTAGAGATTTAACCTATGATCCTCCAACTCTCCTGGAATTAGCTGCACGGACCATTAAGATTCGAAATATTTCCTACACTCCCTATGATCTTCCTGGAAATCTTCTTAGATACTTGGGTTCAGCCAGCAATTGCCCAAACCCAAAGTGTGG|AGGAACCAGAGTGAGGGTACTCGAACAGTGACTGCCATCTGGTGGTTAACCAGAATCATCACCTTGTGTAGCCTGATGGTTACTAAGATGTCCACTCTTGACTCACATGGCATGCACTCGCAGCAGGGGACCAGTTGAAGGATGTCTGACTTTGGAGGGTCACCAGTTGAAGGATGTCTGATGAAGGAGCCT 11 1.0 0.927682309518392 0.7372412976820841 N Y 3.2708899988179203 3.65657572715995 3.2708899988179203 0 0.0 0.0 Y 0.0 N Y 5442 312 ENSG00000163428 ENSG00000175697 + - 3 3 120068186 120003941 coding intron LRRC58 GPR156 120043356 119883492 - - 0.0 120053709 119963325 - + N - 8.80911062906724 N SA470 1 0.0 1.0 1 0 2 N N 0.0 0.0 11 1.08182948442405 1.24378000604441 1.24378000604441 1.08182948442405 4 - 0 0.994848257334812 HCT116-unstranded 10.0 374498 GCCATCTTGGTCCTGCCCTGACAGATTCTCCTATCGGGGTCACAGGGACGCTAAGATTGCTACCTGGACTTTCGTTGACCATGCTGTCCCGGGTGGTACTTTCCGCCGCCGCCACAGCGGCCCCCTCTCTGAAGAATGCAGCCTTCCTAGGTCCAG|GAAAGACAAGGCACTCTCTCCACAGCAGCCCCAACAACTAGCCCTGCACCCTGTCTCTCTAACCACCACAAGTAAATGAGCATTCTCCTATCTGTTTCATCTTGTACCACGTGGGATTTGATGTTGTGCTGACAGCCTCGGCTTGGGGATTTGGGCAGGGAGACTGGGGAGAAAGGACTAGAAACAGTAAA 3 0.622590987503028 0.953162154326263 0.41285904071592 Y Y 3.54719490125717 3.18036140160443 3.18036140160443 0 0.0 0.0 Y 0.0 N Y 30520 823 ENSG00000116459 ENSG00000143110 + - 1 1 112005395 112021134 coding intron ATP5F1 C1orf162 111991486 112016414 + + 0.0 111992495 112019420 + - N - 0.109951276003651 N SA470 1 0.0 1.0 1 0 5 N Y 0.0 0.0 8 0.932835004533309 1.14660969307219 1.14660969307219 0.932835004533309 4 - 2.375 0.993718818353945 HCT116-unstranded 10.0 371057 GCGAGACTTGTGAGCGGCCATCTTGGTCCTGCCCTGACAGATTCTCCTATCGGGGTCACAGGGACGCTAAGATTGCTACCTGGACTTTCGTTGACCATGCTGTCCCGGGTGGTACTTTCCGCCGCCGCCACAGCGGCCCCCTCTCTGAAGAATGCAGCCTTCCTAGGTCCAGG|CTTTCATCCATCCCAGGGGAATCACTTACCTATGCCAGCACAACTTTCAAACTCTCAGAAGAAAAGAGCAATCACTTGGCTGAGAACCATTCTGCAGACTTTGACCCCATTGTCTATGCTCAAATTAAAGTAACAAACTAACTCAGCTTTTCCAATGAGGCTTGAATCCATTTCCTCTCATCTCAGCCCTATCTTCACACATCACTTTCACTTTTTTAC 20 0.576401496041286 0.3460001024272609 0.604032576599218 Y Y 3.5597647729410897 3.43614916339873 3.43614916339873 0 0.0 0.0 Y 0.0 N Y 30520 823 ENSG00000116459 ENSG00000143110 + - 1 1 112005395 112021134 coding coding ATP5F1 C1orf162 111991486 112016414 + + 0.0 111992495 112020605 + - N - - N SA470 1 0.0 1.0 1 0 5 N Y 0.0 0.0 127 1.0623954218296 1.45755469458329 1.45755469458329 1.0623954218296 4 - - 0.986735316494148 HCT116-unstranded 10.0 375402 CTTTCGTTGACCATGCTGTCCCGGGTGGTACTTTCCGCCGCCGCCACAGCGGGACCCTATGTACTCGGAACTGGGCTTATCTTGTACGCTTTATCCAAAGAAATATATGTGATTAGCGCAGAGACCTTCACTGCCCTATCAGTACTAGGTGTAATGGTCTATGGAATTAAAAAATATGGTCCCTTTGTTGCAGACTTTGCTGATAAACTCAATG|AGCTTTCATCCATCCCAGGGGAATCACTTACCTATGCCAGCACAACTTTCAAACTCTCAGAAGAAAAGAGCAATCACTTGGCTGAGAACCATTCTGCAGACTTTGACCCCATTGTCTATGCTCAAATTAAAGTAACAAACTAACTCAGCTTTTCCAATGAGGCTTGAATCCATTTCCTCTCATCTCAGCCCTATCTTCACACATCACTTTCACTTTTTTA 6 0.948721386653214 0.671440680462262 0.4643812749506889 Y Y 3.48639814491089 3.4655144718019804 3.4655144718019804 0 0.0 0.0 Y 0.0 N Y 30520 823 ENSG00000116459 ENSG00000143110 + - 1 1 112005395 112021134 coding intron ATP5F1 C1orf162 111991486 112016414 + + 0.0 111998871 112020605 + - N - - N SA470 2 0.0 1.75 1 6 5 Y Y 0.0 0.0 8 1.3862964650703302 1.2826481312333 1.3862964650703302 1.2826481312333 4 - - 0.9323395988396792 HCT116-unstranded 10.0 89981 TGGACAGCCGATCCACGCCGAGCTGTCACCCGTGACGGACTTCAGAGAAGCCTGCTGCCGTCAGTATGAGATGGGAGAATGCACACGAGGCGGCTTCTGCAACTTCATGCATTTGAAGCCCATTTCCAGAGAGCTGCGGCGGGAGCTGTATGGCCGCCGTCGCAAGAAG|GCAAAATCTCCAAAAATCTTGCCAGATATTCTGAAGAAAATCGGGGACACCCCTATGGTCAGAATCAACAAGATTGGGAAGAAGTTCGGCCTGAAGTGTGAGCTCTTGGCCAAGTGTGAGTTCTTCAACGCGGGCGGGAGCGTGAAGGACCGCATCAGCCTGCGGATGATTG 7 0.32011684980268 0.797325526503607 0.331124106603563 Y Y 3.47973990787175 3.20699822305859 3.20699822305859 0 0.0 0.0 Y 0.0 N Y 13364 248 ENSG00000160201 ENSG00000160200 + - 21 21 44527697 44497053 coding coding U2AF1 CBS 44513066 44473301 - - 0.0 44514581 44488725 - + N - - N SA470 3 0.0 1.8 1 3 2 Y Y 0.0 0.0 5 0.8615767750203471 0.803274587237016 0.8615767750203471 0.803274587237016 4 - - 0.91057328971318 HCT116-unstranded 10.0 89535 CCTGAAAGCTCCACAGACCTGCAGACTCAGTTTCCAGGCCTGTCCTGCTGCCCCCGGAGCACGGGCATGGGAAGACAGCCATCTGGGCGGTCTCGGGACTGTTTGGTTGAGAAGGTTCTGTCACATATGACGTG|TTCTTGCGACGGCGGCCATACAGCTCCCGCCGCAGCTCTCTGGAAATGGGCTTCAAATGCATGAAGTTGCAGAAGCCGCCTCGTGTGCATTCTCTGTGGGTGGGTTGGAAGGAGACATTTACTACCTCGTGTGCACACGGCCCCGAACTGTGCTCAGTCACGTCACTGGCCACTCCTCACTCACCCCATCTCATACTGACGGCAGCAGGCTT 37 1.0 0.344797408646452 0.5609998526479821 Y Y 3.49168728493972 3.48908677906663 3.48908677906663 0 0.0 0.0 Y 0.0 N N 248 13364 ENSG00000160200 ENSG00000160201 - + 21 21 44497053 44527697 upstream coding CBS U2AF1 44473301 44513066 - - 0.0 44503176 44514581 + - N - 0.793878728107708 N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 12 0.7644064620481279 1.06887344269442 1.06887344269442 0.7644064620481279 4 - 222.416666666667 0.9903879668904072 HCT116-unstranded 10.0 951254 GCCGGTGCACAGGGAAGTCTTAGTGTTCAGGCTCGATTATAGTGGGGCTGGAAACTGGTCTCACAAATCCAAAGGATCTTTTCTCTGATG|CTTCAGAATCCCAGAGTTGAATAGTCACATTTGTTTCTCCTTCTTCATCAGTCACCAGATTTATGGTAAAGTTTGTAGCATCTGATGAGATCTTCTTGGCCACATTCACCATTTGTAGTATTTTAGGATCTTCTATTTTCACAAAGAGGTGGCTGGAATTAGGCCGTTTATTT 6 0.0133181412187407 0.671440680462262 0.672561556888874 Y Y 3.28449294027173 3.39487633072086 3.28449294027173 0 0.988930976430976 0.0 Y 0.0 N N 3068 419 ENSG00000133731 ENSG00000253598 - + 8 8 82598928 82608409 upstream coding IMPA1 SLC10A5 82570196 82605842 - - 0.0 82601751 82606883 + - N - 0.370771085247584 N SA470 1 0.0 1.0 1 0 3 N Y 0.0 0.0 9 0.686670211670352 0.900444900209235 0.900444900209235 0.686670211670352 4 - 4.22222222222222 0.9899570584706942 HCT116-unstranded 10.0 951253 TCCTGCTTGTCTTTTCATCTCTCAGTTTTTAAACATTACTTCTCTCTTTACTTTGCCTTTTTCTTCTTTCGTCCTCCATTCATTCACGGTTTCCCATTTAGCTTGCTTTCTTCTTTCTCCCATTTATTCTATAGTACTATTTTGACAAAACCCAGATTGCAGATATGATTCCGATTATGCAGCTTTTAGGTGCTAACCTAAAGCTGGTAAACCTATA|CTTCAGAATCCCAGAGTTGAATAGTCACATTTGTTTCTCCTTCTTCATCAGTCACCAGATTTATGGTAAAGTTTGTAGCATCTGATGAGATCTTCTTGGCCACATTCACCATTTGTAGTATTTTAGGATCTTCTATTTTCACAAAGAGGTGGCTGGAATTAGGCCGTTTATTTTCGTAGCTTGAACTTACAAGGATGGTTTCTTCAGTCTTTGTGAAAAATAGTATTTCAG 28 0.9761569711040252 0.865449587730756 0.7230646517490951 Y Y 3.3561641511227407 3.39487633072086 3.3561641511227407 0 0.995401968532222 0.00682520295998268 Y 0.0 N N 3068 419 ENSG00000133731 ENSG00000253598 - + 8 8 82598928 82608409 upstream coding IMPA1 SLC10A5 82570196 82605842 - - 0.0 82598948 82606883 + - N - 0.370771085247584 N SA470 2 0.0 1.24324324324324 1 9 3 N Y 0.0 0.0 37 1.43164261112404 1.50937886150181 1.50937886150181 1.43164261112404 4 - 1.02702702702703 0.981682197619476 HCT116-unstranded 10.0 795925 TGGACGACTGGTAACAGGGGGCGGAGGGCTCCGAAGTCTGGTTTTGGGCGGGAATTGAAACCGCCGCTGAAGCCAACAAGAATTTGAGAACTGTAAATACCAAGCCTTGAAAGGGACCATGGTGCGGCCTGTG|AGAACACCAGTGTTACTTCACTCCCCTTTGTGGACACCAAGGGGAAGAAGAATACGGTAAGCTTCCCACACATTAGCAAGAAAGTCCTGCTGAAGTCATCCCTGCTGTATCAGGTGAGTGCAGACGGACTGGACCCTGAGAAGGCAGGTGAAAGACCTGGTTTTAGTCCAAAGCCAGTT 2 0.231328453158197 0.206755353293593 0.32772839546393395 Y Y 3.6000045358490698 3.4210491438586 3.4210491438586 0 0.0 0.0 Y 0.0 N Y 916 1231 ENSG00000111247 ENSG00000010219 + - 12 12 4669214 4723325 coding utr5p RAD51AP1 DYRK4 4647950 4671370 + + 0.0 4648122 4699496 + - N 0.859395653755122 0.0341375799910736 N SA470 1 0.0 1.0 1 0 3 N Y 0.0 0.0 17 0.72553833685924 1.14013167220738 1.14013167220738 0.72553833685924 4 7.94117647058824 0.0588235294117647 0.939013046926782 HCT116-unstranded 10.0 796364 GAAGCCAACAAGAATTTGAGAACTGTAAATACCAAGCCTTGAAAGGGACCATGGTGCGGCCTGTGAGACATAAGAAACCAGTCAATTACTCACAGTTTGACCACTCTGACAGTGATGATGATTTTGTTTCTGCAACTGTACCTTTAAACAAGAAATCCAGAACAGCACCAAAGGAGTTAAAACAAGATAAACCAAAACCTAACTTGAACAATCTCCGGAAAGAAGAAATCCCAGTACAAGAGAAAACCCCTAAAAAAAG|AACACCAGTGTTACTTCACTCCCCTTTGTGGACACCAAGGGGAAGAAGAATACGGTAAGCTTCCCACACATTAGCAAGAAAGTCCTGCTGAAGTCATCCCTGCTGTATCAGGAGAATCAAGC 4 0.0611240369400419 0.701464803099367 0.670480102536301 Y Y 2.72663803805438 3.4210491438586 2.72663803805438 0 0.0 0.0 Y 0.00261780104712062 N Y 916 1231 ENSG00000111247 ENSG00000010219 + - 12 12 4669214 4723325 coding coding RAD51AP1 DYRK4 4647950 4671370 + + 0.0 4653070 4699496 + - N - - N SA470 1 0.0 1.0 1 0 3 Y Y 0.0 0.0 5 0.7190603159944251 1.11421958874812 1.11421958874812 0.7190603159944251 4 - - 0.9776006460240378 HCT116-unstranded 10.0 795598 GATTATTTAGATTTGGATAAGATTACTGTGGAAGATGATGTTGGTGGTGTTCAAGGGAAAAGAAAAGCAGCATCTAAAGCTGCAGCACAGCAGAGGAAGATTCTTCTGGAAGGCAGTGATGGTGATAGTGCTAATGACACTGAACCAGACTTTGCACCTG|AACACCAGTGTTACTTCACTCCCCTTTGTGGACACCAAGGGGAAGAAGAATACGGTAAGCTTCCCACACATTAGCAAGAAAGTCCTGCTGAAGTCATCCCTGCTGTATCAGGTGAGTGCAGACGGACTGGACCCTGAGAAGGCAGGTGAAAGACCTGGTTTTAGTCCAAAGC 16 0.5938959767802829 0.412891100563874 0.516006896640127 Y Y 3.56335849579072 3.4210491438586 3.4210491438586 0 0.0 0.0 Y 0.0 N Y 916 1231 ENSG00000111247 ENSG00000010219 + - 12 12 4669214 4723325 coding coding RAD51AP1 DYRK4 4647950 4671370 + + 0.0 4658002 4699496 + - N - 0.0341082170173304 N SA470 1 0.0 1.0 1 0 3 N Y 0.0 0.0 12 0.99113719231664 1.03648333837034 1.03648333837034 0.99113719231664 4 - 0.0833333333333333 0.989111948034816 HCT116-unstranded 10.0 1101729 ATGACTGCCTGCCCCTGTACCACTCGGCAGGAAACATCATCGGCGTGGGGCAGTGTCTCATCTATGGGCTGACAGTCGTCCTCCGCAAGAAATTCTCGGCCAGCCGCTTCTGGGACGA|CAAAATACGCCCTCCTTCAGAAAATCCCTGCCACCTCGATAGGACGTCCTCTTCTTGAGCTCCCCTCTCCGGCCCTCCCTGATACAGCAAGGTTGAGCATTCGGGCACTGGCTTCCCGAACTCACTTCGACTCAGGCACAGCAGGCAAAGATTCAAT 2 0.134789852294234 0.405730977448259 0.351063588263115 Y Y 3.51782959285392 3.38127338926705 3.38127338926705 1 0.991556128715303 0.0 Y 0.7973470891672809 N N 1601 3611 ENSG00000130304 ENSG00000130313 + - 19 19 17616977 17632095 coding upstream SLC27A1 PGLS 17579578 17622432 + + 0.0 17599904 17622152 + - N - - N SA470 1 0.0 1.0 1 0 5 N Y 0.0 0.0 5 0.427549377077766 0.939313025398123 0.939313025398123 0.427549377077766 4 - - 0.9816552807061752 HCT116-unstranded 10.0 1101728 GCGCAGCTGGACGCCTACTCCAATGCGGTAGCCAACCTCTTCCGCCAGCTGGGCTTCGCGCCGGGCGACGTGGTGGCCATCTTCCTGGAGGGCCGGCCGGAGTTCGTGGGGCTGTGGCTGGGCCTGGCCAAGGCGGGCATGGAGGCCGCGCTGCTCAACGTGAACCTGCGGCGCGAGCCCCTGGCCTTCTGCCTGGGCACCTCGGGCGCTAAGGCCCTGAT|CAAAATACGCCCTCCTTCAGAAAATCCCTGCCACCTCGATAGGACGTCCTCTTCTTGAGCTCCCCTCTCCGGCCCTCCCTGATACAGCAAGGTTGAGCATTCGGGCACTGGCTTCCCGAACTCACTTCGACTCAGGCACAGCAGGCAAAGATTCAATGGGTAGGGCCGGACCGACTGCCCGAC 5 0.7443248545936508 0.459590228041721 0.911298036662966 Y Y 3.36551102231762 3.38127338926705 3.36551102231762 0 0.994549011671052 0.0 Y 0.0 N N 1601 3611 ENSG00000130304 ENSG00000130313 + - 19 19 17616977 17632095 coding upstream SLC27A1 PGLS 17579578 17622432 + + 0.0 17597743 17622152 + - N - - N SA470 1 0.0 1.0 1 0 5 N Y 0.0 0.0 19 1.41220854852959 0.90692292107405 1.41220854852959 0.90692292107405 4 - - 0.988685438798455 HCT116-unstranded 10.0 692278 GCTTTCCCCGGTGTCGGCGGCAGGTGGAATTTCCACGCTTTATCTGCGCCTGCGCCGCGCGGGATTCGCGGTCCGAGCTGAAGAGGTTCGCGGTCCGGTTTCACTTCTCCGAACCCTGAGGCAGTGTGTGAAGCTGGGACGCCAGCCATGTTCCAGACCGCTTGGCGCCA|GCTCTTGAGGATCTTGCTTGTCCAAACCCAGAAGACAGTGCATGAAGCCAGGGGACATCCGCCATGCTCCAAACAACTTGGCCTCAGTAGCGTTTCCATTCCCCAAACCTGCTCTGATCTCCCACCTGGAGAGAGGGGAAGCACCATGGGGCCCAGATCCCTGGGACACCGAGATTCTGAG 11 0.7632164401347991 0.6750503542799661 0.8507615255098979 Y Y 3.6272104187567 3.57167229721571 3.57167229721571 0 0.0 0.0 Y 0.0321691176470589 N Y 2500 3537 ENSG00000177842 ENSG00000172888 + - 3 3 40560227 40616176 coding utr5p ZNF620 ZNF621 40547483 40566369 + + 0.0 40547867 40567270 + - N - - N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 7 0.945791046262938 1.17252177653145 1.17252177653145 0.945791046262938 4 - - 0.9815097884157208 HCT116-unstranded 10.0 733840 CCTCAAGCAGTTCCTGATCCTCAATGACTTCCCCTCCGTGAACGAGGCCATTGACCAGCGCAACCAGCAGCTGCGCACACTGCAGGAGGAGTGCGACCGGAAGCTCATCACGCTGCGAGACGAGATCTCCATTGACCTCTACGAGCTGGAGGAGGAGTATTACTCGTC|CAGCTGGCAAAACTCAAGGCTCAGAAACTGCAGGGCCCCCAAAAAAGAAAAGGAAGAAAACACAAAAGAAATTCCGGAAGCGAGAAGAGAAGGCTGCTGAGCACAAGGCCAAGTCCTTGGGGGAGAAATCTCCAGCAGCCTCTGGGGCCAGGAGGCCTGAGGCAGCCAAAGAGGAAGCAGCTTGGGCTTCCAGCTC 8 1.0 0.9103917687733342 0.537981774954003 N Y 3.782089642372741 3.06998735872511 3.06998735872511 0 0.994063926940639 0.0 Y 0.0 N Y 3029 9301 ENSG00000148297 ENSG00000148296 + - 9 9 136214986 136203235 coding intron MED22 SURF6 136205160 136197552 - - 0.0 136210980 136201437 - + N - 3.48648550208776 N SA470 1 0.0 1.0 1 0 1 N N 0.0 0.0 14 0.971703129722196 1.2373019851796 1.2373019851796 0.971703129722196 4 - 54.9285714285714 0.987065558127842 HCT116-unstranded 10.0 223143 AATAAGTACCTGGATTGGGCTTATCGAAGTGGTGGCTACAAAAAGGCCAGAGCTGTGTTTAAAAGTTTACAGGAGAGCCGACCATTTTCAGTTGACTTTTTCAGGAAAATGATTCAGTTTGAAAAGGAGCAAGAATCCTGCAATATGGCGAACATAAGAGAATATTATGAGAGAGCTTTGAGAGAGTTTGGATCCGCAGATTCTG|CCCGTGGAACACAGAGCATTCCTAATGACAGTCCTGCCCGGGGTGAGGGCACCCATTCTGAAGAGGAAGGCTTTGCCATGGATGAGGAGGACTCTGATGGAGAACTGAATACCTGGGAGCTGTCAGAAGGGACAAACTGTCCACCCAAGGAACAGCCTGGCGATCTTTTTAATGAGGACTGGGACTCGGAGTTGAAAGCAGATCAAGGGAATCCATATGATGCTG 63 1.0 0.929693679630544 0.6439153245181911 Y Y 3.29227237536341 3.7574444125448494 3.29227237536341 0 0.0 0.0 Y 0.0 N Y 1109 4642 ENSG00000108651 ENSG00000172301 + - 17 17 30228784 30186356 coding coding UTP6 C17orf79 30187923 30178883 - - 0.0 30192385 30180049 - + N - - N SA470 4 0.0 1.14473684210526 1 9 4 Y Y 0.0 0.0 76 1.40573052766478 1.34095031901663 1.40573052766478 1.34095031901663 4 - - 0.991940701150006 HCT116-unstranded 10.0 223144 CCTTCAGGCTCTACACACAGATGATCCTCTCACTTGGGATTATGTGGCAAGGCGAGAATTAGAGATTGAGTCACAGACAGAAGAGCAGCCTACAACGAAACAAGCCAAAGCAGTGGAGGTCGGCCGGAAGGAGGAGAGGTGCTGTGCTGTGTATGAAGAGGCAGTGAAGACTCTGCCAACAG|CCCGTGGAACACAGAGCATTCCTAATGACAGTCCTGCCCGGGGTGAGGGCACCCATTCTGAAGAGGAAGGCTTTGCCATGGATGAGGAGGACTCTGATGGAGAACTGAATACCTGGGAGCTGTCAGAAGGGACAAACTGTCCACCCAAGGAACAGCCTGGCGATCTTTTTAATGAGGAC 17 0.90368060028041 0.32689895629582105 0.645909199572072 Y Y 3.5346156820034302 3.7574444125448494 3.5346156820034302 1 0.0 0.0 Y 0.0 N Y 1109 4642 ENSG00000108651 ENSG00000172301 + - 17 17 30228784 30186356 coding coding UTP6 C17orf79 30187923 30178883 - - 0.0 30207592 30180049 - + N - - N SA470 1 0.0 1.0 1 0 4 Y Y 0.0 0.0 13 1.1919558391258898 1.08182948442405 1.1919558391258898 1.08182948442405 4 - - 0.989001535957144 HCT116-unstranded 10.0 733389 TTGTGGGCGGCTGTGTCAGCTGACCCAAGGGGCCTTCGAGGTGCCTTAGGCCGCTTGCCTTGCTCTCAGAATCGCTGCCGCCATGGCTAGTCAGTCTCAGGGGATTCAGCAGCTGCTGCAGGCCGAGAAGCGGGCAGCCGAGAAGGTGTCCGAGGCCCGCAAAA|TCCTTGCTGAGAAGCAGATTGAGCCAGTTGTGTGTTGTCATGGAGACTGGGGTGAGCCCTGCAACAGCGGAGGGGCCTGAGAACTTGGAGGATGCTCCTCTCCTGCCCGGCAATTC 3 0.0543627142490839 0.733356642258077 0.5486821508467461 Y Y 3.1291192031157298 3.37820887507754 3.1291192031157298 2 0.0 0.0 Y 0.0 N Y 7004 1156 ENSG00000136888 ENSG00000157693 + - 9 9 117360653 117408702 coding coding ATP6V1G1 C9orf91 117350026 117373486 + + 0.0 117350200 117400824 + - N - - N SA470 1 0.0 1.0 1 0 2 N Y 0.0 0.0 6 0.90692292107405 1.1919558391258898 1.1919558391258898 0.90692292107405 4 - - 0.989822370339538 HCT116-unstranded 10.0 733388 TGTGGGCGGCTGTGTCAGCTGACCCAAGGGGCCTTCGAGGTGCCTTAGGCCGCTTGCCTTGCTCTCAGAATCGCTGCCGCCATGGCTAGTCAGTCTCAGGGGATTCAGCAGCTGCTGCAGGCCGAGAAGCGGGCAGCCGAGAAGGTGTCCGAGGCCCGCAAAAG|CATATGATGCTGAGCTGGCTGCTCCAGAATGAACCACAGCTCTGAGAAGGGGAAGTAGAAACAGCTGGCGCCCTGCCATGGCCTGTGAACCACAGGTGGACCCGGGGGCCACTGGCCCATTGCCCCCCTCCTCCCCTGGCTGGAGTGCCCTGCCTGGAGGGAGCCCTCCTGGCTGG 5 1.0 0.232238953609115 0.0687221749358273 Y Y 3.11547640886856 3.4937534244795 3.11547640886856 3 0.0 0.0 Y 0.0 N Y 7004 1156 ENSG00000136888 ENSG00000157693 + - 9 9 117360653 117408702 coding utr5p ATP6V1G1 C9orf91 117350026 117373486 + + 0.0 117350200 117379398 + - N - - N SA470 1 0.0 1.0 1 0 2 N Y 0.0 0.0 11 0.958747087992567 1.0235272966407098 1.0235272966407098 0.958747087992567 4 - - 0.954025029115982 HCT116-unstranded 10.0 6612 GTGTGAAGACCTACACAGATGAGCTGACGCCCATTGAGTCTGCTGTCTCTGTGTTCAAGGCAGCCAACTGGTATGAAAGGGAGATCTGGGACATGTTTGGAGTCTTCTTTGCTAACCACCCTGATCTAAGAAGGATCCTGACAGATTATGGCTTCGAGGGACATCCTTTCCGGAAAGACTTTCCTCTATCTGGCTATGTTGAG|CTGCTCTGGGCTGGGCTGGAGCTGGATGTCATGGGGCAGCTGCACATCCAGGATGAGGAACTAGCGTCCACACACCCAGGCCGCCGACTCAGACTCCTCCTGCAGCACCACGTGCCCAGTGACTTGGAGGGCACTGAGCAGTGGCTGCAGCAGCTCCAGGACCTGCGGAAGGGGCCTCCTCTTAGCAC 12 0.7667449430141079 0.607439018675571 0.105812331504879 Y Y 3.4906542151698305 2.92547872850402 2.92547872850402 0 0.0 0.0 Y 0.0 N Y 9646 299 ENSG00000213619 ENSG00000196666 + - 11 11 47606114 47610746 coding coding NDUFS3 FAM180B 47586888 47608198 + + 0.0 47604020 47609591 + - N - - N SA470 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 12 1.21138990172034 1.0235272966407098 1.21138990172034 1.0235272966407098 4 - - 0.971288441686692 HCT116-unstranded 10.0 6336 TGAAGTGAAGCGGGTGGTGGCAGAGCCGGTGGAGTTGGCCCAAGAGTTCCGCAAATTTGACCTGAACAGCCCCTGGGAGGCTTTCCCAGTCTATCGCCAACCCCCGGAGAGTCTCAAGCTTGAAGCCGGAGACAAGAAGCCTGATGCCAAGTAGCTCCAGGGAACGCATGTGGATCCTAGACAGCGCCTTATCTATGATTGAGT|GATGGAAAGAGCCCCTGGGAGGTGACCGAGGCCACAGCCAGCCCCTCCCTGTTCAGCACTGAAGAATGACACGCATTACAGAGCTCTGGAGCAGCCCGCAGTGGAAAGTTGGAGCTGAGGTGTGTGGCAGGCAGATGAGGGAGCAGAGAACTGCT 12 0.916598664599294 0.803486271129331 0.17332331922497102 Y Y 3.782089642372741 3.26360926716282 3.26360926716282 0 0.0 0.0 Y 0.0 N N 9646 299 ENSG00000213619 ENSG00000196666 + - 11 11 47606114 47610746 utr3p upstream NDUFS3 FAM180B 47586888 47608198 + + 0.0 47606083 47608133 + - N - - N SA470 1 0.0 1.0 1 0 2 N Y 0.0 0.0 6 0.576543856968503 0.900444900209235 0.900444900209235 0.576543856968503 4 - - 0.992339981631 HCT116-unstranded 10.0 692565 CAGCTCCCTGCCCAGGCTAGGAGGCCGGCTTGCGGGGTTGAGTGGCCCGAGCTAAGGGTGCGGAGACCTAAGGGCGGCGACTACGACGGCGTTGATATCGGTGGTAACGACGGCCTCAGCAGGCGGGGAAGATGAAAGG|GTTCCTATTACTGTAACCATGCCAGAAATGACAGAGAATGAGACGCCTACAAAAAAGCAGCACAGAAAGAAAAACCGGGAGACACACAATGCAGTGGAGAGGCATAGAAAGAAGAAAATTAATGCTGGGATAAACAGAATAGGA 111 3.153272781023e-06 0.8802863936503901 0.6631041285657121 Y Y 3.5293265419746 3.6491271616355 3.5293265419746 1 0.0 0.0 Y 0.0 N Y 14731 23055 ENSG00000121579 ENSG00000176542 + - 3 3 113465147 113415493 coding utr5p NAA50 KIAA2018 113437841 113367232 - - 0.0 113464789 113393743 - + N - - N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 5 1.1919558391258898 1.07535146355923 1.1919558391258898 1.07535146355923 4 - - 0.9704913969975608 HCT116-unstranded 10.0 690654 ATAGGAACTAATTCTGCTTCTTATCTGCCCAAAGCATATTATATTGGGGCTGTGGATACATACCTGTGCTGCTTTTTTGTAGGCGTCTCATTCTCTGTCATTTCTGGCATGGTTACAGTAATAGGAA|CCCTTTCATCTTCCCCGCCTGCTGAGGCCGTCGTTACCACCGATATCAACGCCGTCGTAGTCGCCGCCCTTAGGTCTCCGCACCCTTAGCTCGGGCCACTCAACCCCGCAAGCCGGCCTCCTAGCCTGGGCAGGGAGCTGTGCGAGCAACGAAGGCCGCGAGAGTCGAGTGAGGGCTTGAGTCTGGTGGGGGCGGGAGTGTCTCCCGCCGCCGCGCTTGTGCCGCCGCTTCTCCACACGTGCACTCGGGTCTCTCGG 144 0.526858521429785 0.7829673040155859 0.438041440533161 Y Y 3.60785432895764 3.5000010863647097 3.5000010863647097 0 0.0 0.0 Y 0.0 N Y 23055 14731 ENSG00000176542 ENSG00000121579 - + 3 3 113415493 113465147 utr5p intron KIAA2018 NAA50 113367232 113437841 - - 0.0 113393743 113464789 + - N 21.8957563653404 0.961114538476836 N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 5 0.550631773509245 1.12069760961293 1.12069760961293 0.550631773509245 4 3 259.2 0.969071217008611 HCT116-unstranded 10.0 690527 GCTAGGAGGCCGGCTTGCGGGGTTGAGTGGCCCGAGCTAAGGGTGCGGAGACCTAAGGGCGGCGACTACGACGGCGTTGATATCGGTGGTAACGACGGCCTCAGCAGGCGGGGAAGATGAAAGG|GTTCCTATTACTGTAACCATGCCAGAAATGACAGAGAATGAGACGCCTACAAAAAAGCAGCACAGAAAGAAAAACCGGGAGACACACAATGCAGTGGAGAGGCATAGAAAGAAGAAAATTAATGCTGGGATAAACAGAATAGGAGAGCTGATCCCATGTTCTCCTGCCCTGAAGCAGAGCAAGAATATGATCCTGGACCAAGCCTTTAAATATATAACAGAATTGAAAAGGCAAAATGATGAACTCCTGCTTAATGGAGGAAACAATGAACAAGCTGAAGAAATAAAAAAGCTACGGAAACAACTGGAAGAAATCCAAAAAGAAAATGGCC 182 0.0006462695180756901 0.979243354094766 0.4887202406537821 Y Y 3.5293265419746 3.6491271616355 3.5293265419746 1 0.0 0.0 Y 0.0 N Y 14731 23055 ENSG00000121579 ENSG00000176542 + - 3 3 113465147 113415493 coding utr5p NAA50 KIAA2018 113437841 113367232 - - 0.0 113464789 113393743 - + N - - N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 7 1.12717563047775 1.00409323404627 1.12717563047775 1.00409323404627 4 - - 0.9519983033630792 HCT116-unstranded 10.0 691675 AGCCGAGAGACCCGAGTGCACGTGTGGAGAAGCGGCGGCACAAGCGCGGCGGCGGGAGACACTCCCGCCCCCACCAGACTCAAGCCCTCACTCGACTCTCGCGGCCTTCGTTGCTCGCACAGCTCCCTGCCCAGGCTAGGAGGCCGGCTTGCGGGGTTGAGTGGCCCGAGCTAAGGGTGCGGAGACCTAAGGGCGGCGACTACGACGGCGTTGATATCGGTGGTAACGACGGCCTCAGCAGGCGGGGAAGATGAAAGG|GTTCCTATTACTGTAACCATGCCAGAAATGACAGAGAATGAGACGCCTACAAAAAAGCAGCACAGAAAGAAAAACCGGGAGACACACAATGCAGTGGAGAGGCATAGAAAGAAGAAAATTAATGCTGGGATAAACAGAATAGGAGAGCTGATCCCATGTTCTCCTGCCCTGAAGCAGAGCAAGAATATGATCCTGGACCAAGCCTTTAAATATATAACAGAATT 158 1.0 0.843049047197009 0.480255075978357 Y Y 3.5293265419746 3.6491271616355 3.5293265419746 1 0.0 0.0 Y 0.0 N Y 14731 23055 ENSG00000121579 ENSG00000176542 + - 3 3 113465147 113415493 coding utr5p NAA50 KIAA2018 113437841 113367232 - - 0.0 113464789 113393743 - + N - - N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 36 1.6389392787981 1.39277448593515 1.6389392787981 1.39277448593515 4 - - 0.992565606363912 HCT116-unstranded 10.0 690587 AGGCCGGCTTGCGGGGTTGAGTGGCCCGAGCTAAGGGTGCGGAGACCTAAGGGCGGCGACTACGACGGCGTTGATATCGGTGGTAACGACGGCCTCAGCAGGCGGGGAAGATGAAAGG|GCTCAAGTAATTCCCATTATGCCATGCCCTGTGTGCACCTTCTGGAAGTTAGCCCACGGACATCTAAGATCTGGGATATTTCCAAATCTGGTTGTGGAAGGGCTTGGAAATCTATAACCGCAACTAGGTGGAGGACACCTGTTTCAGCAGGAGGTTATAAAATATGAAGCGAAACTAGGAAGAGGGAGTTGTGATCA 7 0.854566655553249 0.8953509209524201 0.724295681085317 Y Y 3.5293265419746 3.4471914517728104 3.4471914517728104 0 0.0 0.0 Y 0.0 N N 14731 23055 ENSG00000121579 ENSG00000176542 + - 3 3 113465147 113415493 coding upstream NAA50 KIAA2018 113437841 113367232 - - 0.0 113464789 113416571 - + N - - N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 5 0.6218900030222061 0.7579284411833129 0.7579284411833129 0.6218900030222061 4 - - 0.9927735180064732 HCT116-unstranded 10.0 5843 AAGATGATGCTGAAGAGACTGCTCTGGAAGGCTATTCCACAATCATTGATGATGAAGATAACCCTGTTGATGAGTATCAGATATTTAAAGCTATCTTTCAAACTATTCAAAATCGTAATCCTGTGTGGTATCAGGCACTGACTCACGGTCTTAATGAAGAACAAAGAAAACAGTTACAGGACATAGCAACTCTGGCTGATCAAAGAAGAGCAGCCCATG|TTCGCAACACAAGAACATACAAAAGACCGTAGCGACAACCATTTCTGACGCCTTCAACTTTTAAATCCAAATTACGTGAAACCACAAAGCATCAGTGGTGTCTCCCCGAGGAATCCAAGACCCCCCGGCCGGTTGCCAAGCCGCCGGAATTTCAGCAGGAGAGGAAGGCTCACCCTCCCACCGCATGGCGATGCCCGGGAGACTGGAGAAGCTCAGGCAGGCTTGGAAGCCAATCCCCGGC 214 1.0 0.88832435557594 0.6151034279978139 Y Y 3.41848849077886 3.3310150601850803 3.3310150601850803 4 0.0 0.0 Y 0.0 N N 27179 4411 ENSG00000205339 ENSG00000166478 + - 11 11 9469673 9550071 coding upstream IPO7 ZNF143 9406169 9481866 + + 0.0 9463744 9481687 + - N - - N SA470 4 0.0 1.94117647058824 1 99 2 N Y 0.0 0.0 204 1.43164261112404 1.58711511187959 1.58711511187959 1.43164261112404 4 - - 0.9363043069352992 HCT116-unstranded 10.0 108116 GGATGCCATGCGCTCAGTGACTAAGCAGGCCATTCGGGAGGCAAGATTGAAGGAGATCAAGGAAGAGCTTCTGCATTCTGAGAAGCTTAAGACATACTTTGAAGACAACCCTAGGGACCTCCAGCTGCTGCGGCATGACCTACCTTTGCACCCCGCAGTGGTGAAGCCCCACCTGGGCCATGTTCCTGACTACCTG|GGCCCAGAGTGAGCCTTACACAACCATCCACCAGCCTGGCTACTGCGCCTTCTATGACGAATGTGGGAAGAACCCAGAGCTGTCTGGAAGCCTCATGACACTCTCCAACGTGTCCTGCCTGTCCAACACGCCGGCCCGCAAGATCACAGGTGATCACCTGATCCTATTACAGAAGATCTGCCCCCGCCTCTACACCGGCCCCAACACCCAAGCCTGCTGCTCCGCCAAGCAGCTGGTATCACTGG 64 0.9076367701400928 0.951975873946601 0.455482452530573 Y Y 3.51360402781852 3.5339931873874804 3.51360402781852 0 0.0 0.0 Y 0.0 N Y 11172 2790 ENSG00000136271 ENSG00000015520 + - 7 7 44614650 44580914 coding coding DDX56 NPC1L1 44605016 44552134 - - 0.0 44607717 44579941 - + N - - N SA470 1 0.0 1.0 1 0 2 N Y 0.0 0.0 89 1.28912615209811 1.61302719533885 1.61302719533885 1.28912615209811 4 - - 0.994848257334812 HCT116-unstranded 10.0 107542 CCCCATTCTGCTCCCCTACCAGTTCCGGATGGAGGAGATCGAGGGCTTCCGCTATCGCTGCAGGGATGCCATGCGCTCAGTGACTAAGCAGGCCATTCGGGAGGCAAGATTGAAGGAGATCAAGGAAGAGCTTCTGCATTCTGAGAAGCTTAAGACATACTTTGAAGACAACCCTAGGGACCTCCAGCTGCTGCGGCATGACCTACCTTTGCACCCCGCAGTGGTGAAGCCCCACCTGGGCCATGTTCCTGACTACCTG|GGCCCAGAGTGAGCCTTACACAACCATCCACCAGCCTGGCTACTGCGCCTTCTATGACGAATGTGGGAAGAACCCAGAGCTGTCTGGAAGCCTCATGACACTCTCCAACGTGTCCTGCCTGTCCAACACGCCGGCCCGCAAGATCACAGGTGATCACCTGATCCTATTACAGAAGATCTGCC 68 4.69520216706418e-05 0.8915625018234241 0.460783291161249 Y Y 3.51360402781852 3.5339931873874804 3.51360402781852 0 0.0 0.0 Y 0.0 N Y 11172 2790 ENSG00000136271 ENSG00000015520 + - 7 7 44614650 44580914 coding coding DDX56 NPC1L1 44605016 44552134 - - 0.0 44607717 44579941 - + N - - N SA470 1 0.0 1.0 1 0 2 N Y 0.0 0.0 13 0.9781811505870108 1.0235272966407098 1.0235272966407098 0.9781811505870108 4 - - 0.9894311593103108 HCT116-unstranded 10.0 106938 ATTCGGGGCAAGTCTCTGCTCTTTGTCAACACTCTAGAACGGAGTTACCGGCTACGCCTGTTCTTGGAACAGTTCAGCATCCCCACCTGTGTGCTCAATGGAGAGCTTCCACTGCGCTCCAGGTGCCACATCATCTCACAGTTCAACCAAGGCTTCTACGACTGTGTCATAGCAACTGATGCTGAAGTCCTGGGGGCCCCAGTCAAGGGCAAGCGTCGGGGCCGAGGGCCCAAAGGGGACAAG|CCCAGAGTGAGCCTTACACAACCATCCACCAGCCTGGCTACTGCGCCTTCTATGACGAATGTGGGAAGAACCCAGAGCTGTCTGGAAGCCTCATGACACTCTCCAACGTGTCCTGCCTGTCCAACACGCCGGCCCGCAA 7 0.940877853834145 0.975017997366234 0.678419777164921 Y Y 2.93702487798787 3.5465630590714 2.93702487798787 2 0.0 0.0 Y 0.00978642673328689 N Y 11172 2790 ENSG00000136271 ENSG00000015520 + - 7 7 44614650 44580914 coding coding DDX56 NPC1L1 44605016 44552134 - - 0.0 44610357 44579941 - + N - 81.6654725105256 N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 6 1.40573052766478 0.8874888584796059 1.40573052766478 0.8874888584796059 4 - 0.166666666666667 0.987065558127842 HCT116-unstranded 10.0 1036817 ACCCAGTAGAACTTCCTGGGTACAAGAAGTTCTGCTCAGGGTCATCATTGGGAGATTCCACCTGGTTTTCCTGGATTCTTGTAAATGGGTGGCCTTTGGCAGAGGAATCATGCAGTTCCCTGGCAGTGAACATTCTGTGTCTCTCTCTAAGTGGTGGTCTGGCTTTTATTTTGAAACCAGTT|CTGGCCACGGGGACTCCGGACGCGAGGGGCGAAATGGGACGTGGGCGGGAGTGGCTCTCTCCGCGGGCGTCCCGGGCGCGGCGCCTGGGTTCTGCCTAGGGGCTGGGTCCCACTCCCGCTCGCGGGGCCCGCGGGGCACTCGGGGCACTGGGGAGCCGCGGGCGCAGCAGCCGTCAGCGCCGGGCGGAAAACTCCGCGGGCGCGGCTGCCCCAGGTGCCAGAGGCAGTGCAAGGGAGGG 9 0.8785984994611921 0.422336887905561 0.261120601411739 N Y 3.47552369040616 3.16316473730098 3.16316473730098 0 0.0 0.0 Y 0.0 N Y 808 23642 ENSG00000230091 ENSG00000122359 - + 10 10 81838668 81965433 intron utr5p RP11-369J21.5 ANXA11 81806616 81910645 - - 0.0 81808934 81965099 + - N 11.3164408213665 1.20276689390696 N SA470 1 0.0 1.0 1 0 1 N N 0.0 0.0 8 1.19843385999071 1.4445986528536698 1.4445986528536698 1.19843385999071 4 3.625 169.5 0.9679438434903148 HCT116-unstranded 10.0 1037327 ACAAACGTGGACATGTCACTCGCCCAGAGAGATGCCCAGGAGCTGTATGCGGCCGGGGAGAACCGCCTGGGAACAGACGAGTCCAAGTTCAATGCGGTTCTGTGCTCCCGGAGCCGGGCCCACCTGGTAGCAGTTTTCAATGAGTACCAGAGAATGACAGGCCGGGACATTGAGAAGAGCATCTGCCGGGAGATGTCCGGGGACCTGGAGGAGGGCATGCTGGCCGTGG|AACTGGTTTCAAAATAAAAGCCAGACCACCACTTAGAGAGAGACACAGAATGTTCACTGCCAGGGAACTGCATGATTCCTCTGCCAAAGGCCACCCATTTACAAGAATCCAGGAAAACCAGGTGGAATCTCCCAATGATGACCCTGAGCAGAACTTCTTGTACCCAG 4 0.240371047649909 0.833012196212688 0.8693147687471221 N Y 3.34421677405477 3.47552369040616 3.34421677405477 0 0.0 0.0 Y 0.0 N Y 23642 808 ENSG00000122359 ENSG00000230091 + - 10 10 81965433 81838668 coding intron ANXA11 RP11-369J21.5 81910645 81806616 - - 0.0 81918856 81808934 - + N - - N SA470 1 0.0 1.0 1 0 1 N N 0.0 0.0 6 1.34095031901663 0.8615767750203471 1.34095031901663 0.8615767750203471 4 - - 0.977837060564704 HCT116-unstranded 10.0 371107 TGGTATATGAAGTATTGCGAGAAGATGAGTTTTCCCCACTAAAGAATGCTGATAGTCAGAATGGGAAAGACAACCCTACTACTGCAAGGCATGCTTTGATGTCCCTTCATCATTGCTGGGTCCTCAATGCAGGGGGCCATTTCATAGATGAAAATGGCTCTCGCCTTCCAGCAATTCCCCG|CCTCCATCAAGGGAGACCTGCAAGTTGCCTGGGGTTCAGTGCTCTAGAAAGTTCCAAGGTTTGTGGCTTGAATTATTCTAAAGAAGCTGAAATAATTGAAGAGAAGCAGAGGCCAGCTGTTTTTGAGGATCCTGCTCCACAGAGA 10 0.37219092107512497 0.561474314536473 0.8632338671467479 Y Y 3.56232542602083 3.58424216889964 3.56232542602083 0 0.0 0.0 Y 0.0 N Y 3191 905 ENSG00000117143 ENSG00000162733 + - 1 1 162569627 162750237 coding utr5p UAP1 DDR2 162531321 162601163 + + 0.0 162560301 162625001 + - N 2.98015006271993 0.0248054998814681 N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 16 1.15308771393701 0.9781811505870108 1.15308771393701 0.9781811505870108 4 16.0625 0 0.955917659453769 HCT116-unstranded 10.0 382732 AACAGCACACCTGAACCAAAGGAAAATGGGGAGGAAGGCTGTCATCAAAATGGTCTTGCCCTCCCTGTAGTGGAAGAAGGGGAGGTTCTCTCACACTCTCTAGAAGCAGAGCACAGGTTATTGAAAGCTATGGGTTGGCAGGAATATCCTGAAAATGATGAGAATTGCCTTCCCCTCACAGAGGATGAGCTCAAAGAGTTCCACATGAAGACAGAGCAG|GTCTTGGCTGGTTTCAGGAAACGGGTCCCATCCCATGGACTCCCACTCTGGGGAGCCTGCGCTCCTGCCCTGTGGGACCTGTGACATGGTTTTCCGCTCCTCAGCTCTGTTAGCCACCCATACTCAGCGCTTCTGCATTGGCCACCCGACCCAAGAGATG 6 0.410896251224917 0.8987418142654979 0.9100375839631252 Y Y 3.30909831730627 3.4315223707792097 3.30909831730627 0 0.0 0.0 Y 0.0 N N 3791 127 ENSG00000159592 ENSG00000159588 + - 1 1 46153785 46089729 coding utr5p GPBP1L1 CCDC17 46092976 46085716 - - 0.0 46095248 46089615 - + N - - N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 8 1.08182948442405 1.0623954218296 1.08182948442405 1.0623954218296 4 - - 0.973332444171362 HCT116-unstranded 10.0 382731 GAATATCCTGAAAATGATGAGAATTGCCTTCCCCTCACAGAGGATGAGCTCAAAGAGTTCCACATGAAGACAGAGCAG|GTCTTGGCTGGTTTCAGGAAACGGGTCCCATCCCATGGACTCCCACTCTGGGGAGCCTGCGCTCCTGCCCTGTGGGACCTGTGACATGGTTTTCCGCTCCTCAGCTCTGTTAGCCACCCATACTCAGCGCTTCTGCATTGGCCACCCGACCCAAGAGATGACATTTGGAGCACAGGCATC 3 1.2950645322149e-07 0.518221239184659 0.8749085205699091 Y Y 3.30909831730627 3.4315223707792097 3.30909831730627 0 0.0 0.0 Y 0.0 N N 3791 127 ENSG00000159592 ENSG00000159588 + - 1 1 46153785 46089729 coding utr5p GPBP1L1 CCDC17 46092976 46085716 - - 0.0 46095248 46089615 - + N - - N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 6 1.0170492757759 1.05591740096479 1.05591740096479 1.0170492757759 4 - - 0.924405886020298 HCT116-unstranded 10.0 216603 CAGTTGCAGAGCTAAGAACTGTTGAGAGTGAAGCTGCATCTTATCTGGACCAGATTTCTAGATATTATATTACAAGAGCCAAATTGGTTTCTAAAATAGCTAAATATCCCCATGTGGAGGACTATCGCCGCACCGTGACAGAGATTGATGAGAAAGAATATATCAGCCTTCGGCTCATCATATCAGAGCTGAGGAATCAATATG|GCTGAAAAACTGGGTGGTAGCTGAAGACGTGGTGTTTAAACCTGTGGCTGCCCCCTGGAACCCGGAGCACTGGCTACAGCGCCCACAGCTGACTCGGCAGGTCCTGGGAAAGGAGGACCTGACAGCTTTTTCCTTGGGAAGCCCCCTACCCCGCTACCTCTACCTGGCTAGCAACCAGACTAATGCGTGGGGTCACCAGCGCGGGTACCGAATCCAGATCCAC 52 1.0 0.763860556008213 0.481871654834949 Y Y 3.60888739872753 3.1363999347708305 3.1363999347708305 1 0.0 0.0 Y 0.0 N Y 14275 6400 ENSG00000131467 ENSG00000131480 + - 17 17 40995523 41002724 coding coding PSME3 AOC2 40976402 40996617 + + 0.0 40991397 41001103 + - N - - N SA470 1 0.0 1.0 1 0 6 Y Y 0.0 0.0 41 1.30208219382774 1.47698875717774 1.47698875717774 1.30208219382774 4 - - 0.994010411196582 HCT116-unstranded 10.0 222834 AGAGCTAAGAACTGTTGAGAGTGAAGCTGCATCTTATCTGGACCAGATTTCTAGATATTATATTACAAGAGCCAAATTGGTTTCTAAAATAGCTAAATATCCCCATGTGGAGGACTATCGCCGCACCGTGACAGAGATTGATGAGAAAGAATATATCAGCCTTCGGCTCATCATATCAGAGCTGAGGAATCAATAT|GATCTGGTGGCTTGGGTCACAGCCAGCTTCCTGCACATTCCCCATGCCGAGGACATCCCAAACACAGTGACTCTGGGGAACAGAGTTGGCTTCTTGCTCCGACCCTATAACTTCTTTGATGAGGACCCCTCCATCTTCTCCCCTGGCAGTGTCTACTTTGAGAAGGGCCAGGATGCTGGGCTCTGCAGCATCAATCCTGTGGCCTGCCTCCCCGACCTGGCAGCCTGTGTCCCGGACTTACC 10 0.444872088242822 0.7079482696218321 0.15027876654638098 Y Y 3.5676145660496603 3.5314325343077404 3.5314325343077404 0 0.0 0.0 Y 0.0 N Y 14275 6400 ENSG00000131467 ENSG00000131480 + - 17 17 40995523 41002724 coding coding PSME3 AOC2 40976402 40996617 + + 0.0 40991397 41002099 + - N - 1.16067221581642 N SA470 1 0.0 1.0 1 0 6 Y Y 0.0 0.0 10 1.15956573480182 1.47698875717774 1.47698875717774 1.15956573480182 4 - 70.4 0.9814788668870608 HCT116-unstranded 10.0 221063 AGATTTCTAGATATTATATTACAAGAGCCAAATTGGTTTCTAAAATAGCTAAATATCCCCATGTGGAGGACTATCGCCGCACCGTGACAGAGATTGATGAGAAAGAATATATCAGCCTTCGGCTCATCATATCAGAGCTGAGGAATCAATAT|GATCTGGTGGCTTGGGTCACAGCCAGCTTCCTGCACATTCCCCATGCCGAGGACATCCCAAACACAGTGACTCTGGGGAACAGAGTTGGCTTCTTG 6 9.27997494808952e-05 0.17920550937228896 0.4290482331961261 Y Y 3.5676145660496603 3.5314325343077404 3.5314325343077404 0 0.0 0.0 Y 0.0 N Y 14275 6400 ENSG00000131467 ENSG00000131480 + - 17 17 40995523 41002724 coding coding PSME3 AOC2 40976402 40996617 + + 0.0 40991397 41002099 + - N - - N SA470 1 0.0 1.0 1 0 6 Y Y 0.0 0.0 5 0.667236149075908 1.26969208950367 1.26969208950367 0.667236149075908 4 - - 0.919767440873744 HCT116-unstranded 10.0 671976 AGGTAAAGGAGGTAAAAACAGACGCAGGGGTAAGAATGAGAATGAATCTGAAAAAAGAGAACTGGTATTCAAAGAGGATGGTCAGGAGTATGCTCAGGTAATCAAAATGTTGGGAAATGGACGGCTAGAAGCAATGTGTTTCGATGGTGTAAAGAGGTTATGTCACATCAGAGGAAAATTGAGAAAAAAGG|CATGGAGGGATTTTTGAAATCAGATGAGAGGCAGAGATTGGCCAAAGAAAGACGAGAAGAAAGAGAAAAATGTCTGGCTGCTCGGGAGCAACAGATCCTGGAGAAACAGAAAAGAGCCAGGCTGCAGTACGAAAAGCAAATGGAGGAGCGATGGCGAAAACTGGAAGAGCAGCGGCAGCGGGAGGACCAA 9 0.683683353646591 0.995923209576945 0.443936468051517 Y Y 3.21488786896051 2.8616666583314 2.8616666583314 2 0.0 0.0 Y 0.0 N Y 11709 2111 ENSG00000173674 ENSG00000184368 + - X X 20159962 20135035 coding coding EIF1AX MAP7D2 20142636 20024831 - - 0.0 20153856 20082923 - + N - - N SA470 3 0.0 2.0714285714285703 2 14 2 N Y 0.0 0.0 14 1.2373019851796 1.20491188085552 1.2373019851796 1.20491188085552 4 - - 0.9302446192836292 HCT116-unstranded 10.0 671978 GACGCCGCGAGGTCGCCGCCACCGCCATGCCCAAGAATAAAGGTAAAGGAGGTAAAAACAGACGCAGGGGTAAGAATGAGAATGAATCTGAAAAAAGAGAACTGGTATTCAAAGAGGATGGTCAGGAGTATGCTCAGGTAATCAAAATGTTGGGAAATGGACGGCTAGAAGCAATGTGTTTCGATGGTGTAAAGAGGTTATGTCACATCAGAGGAAAATTGAGAAAAAAGG|CATGGAGGGATTTTTGAAATCAGATGAGAGGCAGAGATTGGCCAAAGAAAGACGAGAAGAAAGAGAAAAATGTCTGGCTGCTCGGGAGCAACAGATCCTGGAGAAACAGAAAAGAGCCAGGCTGCAGTACGAAAAGCAAATGGAGGAGCGATGGCGAAAACTGGAAGAGCAGCGGCAGCGGGAGGACCAAAAGAGAGCTGCTGTGGAAGAGAAAAGGAAACAGAAGCTC 9 8.372671829007329e-05 0.995923209576945 0.443936468051517 Y Y 3.21488786896051 2.8616666583314 2.8616666583314 2 0.0 0.0 Y 0.0 N Y 11709 2111 ENSG00000173674 ENSG00000184368 + - X X 20159962 20135035 coding coding EIF1AX MAP7D2 20142636 20024831 - - 0.0 20153856 20082923 - + N - - N SA470 3 0.0 2.3076923076923097 2 13 2 N Y 0.0 0.0 13 1.17899979739626 1.12069760961293 1.17899979739626 1.12069760961293 4 - - 0.9204987864492348 HCT116-unstranded 10.0 693301 CGGAAGTGGCGAAGGCGGGGTCGGCGCTGCCGGGTGAAATCGTAGGACAGTGAAGATGCTGCTGGAATTGTCCGAGGAGCATAAGGAACACCTGGCCTTCCTGCCTCAAGTGGACAGCGCGGTGGTCGCCGAGTTTGGGCGGATTGCTGTGGAATTCCTGAGACGCGGCGCAAACCCAAAAATCTACGAAGGCGCCGCCAGAAAACTCAATGTGAGTAGTGACACTGTCCAGCATGGTGTGGAAGGATTAACGTATCTCCTCACTGAGAGCTCAAAGCTCA|TGAAGATGAATCCGGCCTCGGCGCCCCCTCCGCTCCCGCCGCCTGGGCAGCAAGTGATCCACGTCACGCAGGACCTAGACACAGACCTCGAAGCCCTCTTCAACTCTGTCATGAATCCGAAGCCTAGCTCGTGGCGGAAGAAGATCC 6 0.00012536599045374498 0.954899924163882 0.3942728174238039 Y Y 3.69528790675807 3.12548562747275 3.12548562747275 0 0.0 0.0 Y 0.0 N Y 387 7333 ENSG00000114744 ENSG00000018408 + - 3 3 149470286 149454501 coding utr5p COMMD2 WWTR1 149456257 149235022 - - 0.0 149469190 149375096 - + N - - N SA470 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 8 0.5311977109148011 0.738494378588869 0.738494378588869 0.5311977109148011 4 - - 0.915663412959827 HCT116-unstranded 10.0 693504 TAGACAGTTCCAAAACTTCCACTGCCAAGTTTTTGTTGAAGCACGTATCTTCTTGCAATCAAGGTCTTTGGATAAGTGGAAATGGCTGTTGATCCACTCACACACTTAGCTGCCTCTTGGAATTTCAGCATTGCTCCAAACAAGAGAGAACTGGTTCATTCATTTATAGAAACTTAACATTCCAGTCTCCTAAGAAATGGTCAAATTCATCCAGTGTTGGTCAGTTCCT|GGGATCTGGAACTTAGTGCATTGAACATGTCAAAAAACACAAAGCATGTGAAGGTCATTGTTGTGTCTCGAGGTGTAATCACATTGTCTCGTAGCTGTCAAGAGGCAATAACAAAATTACT 16 0.7188467958620579 0.351681584320008 0.239157653029938 Y Y 3.45041445226185 3.4655144718019804 3.45041445226185 0 0.991759082668174 0.0 Y 0.0 N Y 249 5975 ENSG00000114670 ENSG00000017260 - + 3 3 131069309 130735556 utr5p coding NEK11 ATP2C1 130745694 130569439 + + 0.0 130748457 130717233 - + N - 1.79247114369864 N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 9 1.09478552615367 0.680192190805537 1.09478552615367 0.680192190805537 4 - 47 0.9524619084049888 HCT116-unstranded 10.0 966329 CATCAGTGGATGCTGAAGCTATTCAGAAAGCAATCAGAGGAATTGGAACTGATGAGAAAATGCTCATCAGCATTCTGACTGAGAGGTCAAATGCACAGCGGCAGCTGATTGTTAAGGAATATCAAGCAGCATATGGAAAGGAGCTGAAAGATGACTTGAAGGGTGATCTCTCTGGCCACTTTGAGCATCTCATGGTGGCCCTAGTGACTCCACCAGCAGTCTTTGATGCAAAGCAGCTAAAGAAATCCATGAAG|TTCTGTCTTCCTGAGGCTGCTGTTTCTGGGCATGGCCAGGGGATCTTCAGACTTTACAAACCAGTTGTGCAGAGCCAGGCATTTCAATAAGGAACAAAATGCTGAGTAACAACATGAAGTCAGAGTGTTGCTTGCCAAGAGCTGGGAGGCCTGGGTGGTTTCCCAATCTTAAAGAAGCAGAAGGATATTAAAGTGAGCCTCCCAAAGGAAAACGTGG 8 0.67447524857601 0.8131696160011209 0.666061879651521 N Y 3.26191384998362 3.27654986120733 3.26191384998362 0 0.0 0.0 Y 0.0 N N 13824 241 ENSG00000138772 ENSG00000251442 + - 4 4 79531597 79603853 coding intron ANXA3 RP11-792D21.2 79472673 79567057 + + 0.0 79503444 79567156 + - N - - N SA470 1 0.0 1.0 1 0 3 N N 0.0 0.0 15 1.58711511187959 1.23082396431478 1.58711511187959 1.23082396431478 4 - - 0.9937791697056568 HCT116-unstranded 10.0 967191 GTAAGTAGATCCACGTTTTCCTTTGGGAGGCTCACTTTAATATCCTTCTGCTTCTTTAAGATTGGGAAACCACCCAGGCCTCCCAGCTCTTGGCAAGCAACACTCTGACTTCATGTTGTTACTCAGCATTTTGTTCCTTATTGAAATGCCTGGCTCTGCACAACTGGTTTGTAAAGTCTGAAGATCCCCTGGCCATGCCCAGAAACAGCAGCCTCAGGAAGACAGAA|TTTAATTGCTGAATATAGGGAATAGCCATAATGCTTCTTGAACTCTGTTCGAATGTCCAAAAGGTCAATTTCTGATCTGGACACCATTATTCGGTTCAGAGTAAACTCATCAGTTCCAATACCCTGTTAAGGAATGCAGGTGTTC 4 1.0 0.6318097683170321 0.452108090988921 N Y 3.27654986120733 3.3571972208926297 3.27654986120733 0 0.0 0.0 Y 0.0 N N 241 13824 ENSG00000251442 ENSG00000138772 - + 4 4 79603853 79531597 intron coding RP11-792D21.2 ANXA3 79567057 79472673 + + 0.0 79567156 79525553 - + N - 0.430969745146392 N SA470 1 0.0 1.0 1 0 3 N N 0.0 0.0 8 1.30856021469256 0.932835004533309 1.30856021469256 0.932835004533309 4 - 265.625 0.9915277251006072 HCT116-unstranded 10.0 6823 GCTCAACCTGGGCTTCACCATTGGTTCCTTCGTGCTCAGCGCCACCACCCTGCCACTGGGGATCCTCATGGACCGCTTTGGCCCCCGACCCGTGCGGCTGGTTGGCAGTGCCTGCTTCACTGCGTCCTGCACCCTCATGGCCCTGGCCTCCCGGGACGTGGAAGCTCTGTCTCCGTTGATATTCCTGGCGCTGTCCCTGAATGGCTTTGGTGGCATCTGCCTAACGTTCACTTCACTCACG|GCCTCCTCTTCCAGCAGCCTCTATCTTTATTCTACAGGATCCAGAGAATCACCCGCTGATGGTTTTTGCCCAGGCCTGAAACAACCAGAGAGCTACGGGAAAGGAAGGGCTTGGCTTGCCAGAGGAATTTTCCAAGTGCTCAAACGCCAGGCTTACGGCGCCTGTGATCCGTCCAGGAGGACAAAGTGGGATTTGAAGATCCACTCCACTTCTGCTCATGGCGGGCCAGGGCC 9 0.104894641263 0.93889298407605 0.384824208118244 N Y 3.56335849579072 3.3116589703860098 3.3116589703860098 0 0.0 0.0 Y 0.0 N Y 176 2599 ENSG00000149150 ENSG00000134802 + - 11 11 57283259 57195053 coding utr5p SLC43A1 SLC43A3 57252007 57174427 - - 0.0 57268252 57193862 - + N - - N SA470 1 0.0 1.0 1 0 1 N N 0.0 0.0 17 1.42516459025922 1.48346677804255 1.48346677804255 1.42516459025922 4 - - 0.942022157215095 HCT116-unstranded 10.0 1035329 CGCATGTCTTTCCAGCTTCCTGGCGGCATGATCATCACGGGCTTCATGCTCCAGTTCTACAGGACGATGCCGGCGGTGATCTTCTGGCAGTGGGTGAACCAGTCCTTCAATGCCTTAGTCAACTACACCAACAGGAATGCGGCTTCCCCCACATCAGTCAG|GATAAGGAAGCCTGTGTGGGTACCAACAATCAAAGCTACATCTGTGACACAGGACACTGCTGTGGACAGTCTCAGTGCTGCAACTACTACTATGAACTCTGGTGGTTCTGGCTGGTGTGGACCATCATCATCATCCTGAGCTGCTGCTGTGTTTGCCACCACCGCCGAGCCAAGCACCGCCTTCAGGCCCAGCAGCGGCAA 12 0.9597422856589308 0.815926604324538 0.385568701647168 Y Y 3.59061781186084 3.59425138750382 3.59061781186084 0 0.0 0.0 Y 0.0 N Y 1597 4586 ENSG00000156398 ENSG00000166272 + - 10 10 104498951 104576021 coding coding SFXN2 WBP1L 104474297 104503727 + + 0.0 104488286 104557750 + - N - - N SA470 2 0.0 1.125 1 1 4 N Y 0.0 0.0 8 0.965225108857382 1.34095031901663 1.34095031901663 0.965225108857382 4 - - 0.990096936808303 HCT116-unstranded 10.0 1036711 TGGAGCAGCTGCTGTATGCCAAGAAGCTGTATGACTCGGCCTTCCACCCCGACACTGGGGAGAAGATGAATGTCATCGGGCGCATGTCTTTCCAGCTTCCTGGCGGCATGATCATCACGGGCTTCATGCTCCAGTTCTACAGGACGATGCCGGCGGTGATCTTCTGGCAGTGGGTGAACCAGTCCTTCAATGCCTTAGTCAACTACACCAACAGGAATGCGGCTTCCCCCACATCAGTCAG|GATAAGGAAGCCTGTGTGGGTACCAACAATCAAAGCTACATCTGTGACACAGGACACTGCTGTGGACAGTCTCAGTGCTGCAACTACTACTATGAACTCTGGTGGTTCTGGCTGGTGTGGACCATCATCATCATCCTGAGCTGCTGCTGTGTTTGCCACCACCGCCGAGCCAAGCACCGCCTTCAGGCCCAGCAGCGG 13 0.000144022120917483 0.9790781894810408 0.30161868325363106 Y Y 3.59061781186084 3.59425138750382 3.59061781186084 0 0.0 0.0 Y 0.0 N Y 1597 4586 ENSG00000156398 ENSG00000166272 + - 10 10 104498951 104576021 coding coding SFXN2 WBP1L 104474297 104503727 + + 0.0 104488286 104557750 + - N - - N SA470 1 0.0 1.0 1 0 4 N Y 0.0 0.0 5 1.0170492757759 0.900444900209235 1.0170492757759 0.900444900209235 4 - - 0.985077794568294 HCT116-unstranded 10.0 1036712 AACATCGATGCCCCCCGTTGGGACCAGCGCACCTTCCTGGGGAGAGTGAAGCACTTCCTAAACATCACGGACCCCCGCACTGTCTTTGTATCTGAGCGGGAGCTGGACTGGGCCAAGGTGATGGTGGAGAAGAGCAGG|GTTCTGGCTGGTGTGGACCATCATCATCATCCTGAGCTGCTGCTGTGTTTGCCACCACCGCCGAGCCAAGCACCGCCTTCAGGCCCAGCAGCGGCAACATGAAATCAACCTGATCGCTTACCGAGAAGCCCACAATTACTCAGCGCTGCCATTTTATTTCAGGTTTTTGCCAAACTATTTACTACCTCCTTATGAGGAAGTGGTGAACCGACCTCCAACTCCTCCCCCACCATACAGTGCCTTCCAGCTACAGCAGCAGCAGCTGCTGC 4 0.0505699788348038 0.938888678099131 0.988885436512433 Y Y 3.22589030454123 3.50632329616342 3.22589030454123 0 0.0 0.0 Y 0.0 N Y 1597 4586 ENSG00000156398 ENSG00000166272 + - 10 10 104498951 104576021 coding coding SFXN2 WBP1L 104474297 104503727 + + 0.0 104486554 104569650 + - N - - N SA470 1 0.0 1.0 1 0 4 N Y 0.0 0.0 9 0.829186670696274 0.414593335348137 0.829186670696274 0.414593335348137 4 - - 0.9828823971433128 HCT116-unstranded 10.0 1036715 GTTTTCAAGGCGGGCTGTAACTGGTGGCATTTGTCCCGGGACCAGGTCCACAGTTTTATGTGTGAGCAAGATGGAGGCTGACCTGTCTGGCTTTAACATCGATGCCCCCCGTTGGGACCAGCGCACCTTCCTGGGGAGAGTGAAGCACTTCCTAAACATCACGGACCCCCGCACTGTCTTTGTATCTGAGCGGGAGCTGGACTGGGCCAAGGTGATGGTGGAGAAGAGCA|GGATAAGGAAGCCTGTGTGGGTACCAACAATCAAAGCTACATCTGTGACACAGGACACTGCTGTGGACAGTCTCAGTGCTGCAACTACTACTATGAACTCTGGTGGTTCTGGCTGGTGTGGACCATCATCATCATCCTGAGCTGCTGCTGTGTTTGCCACCACCGCCGAGCCAAGCACCGCCTTCAGGCCCAGCAGCGGCAACATGAAATCAACCTGATCGCTTACCGAGAAGCCCACAATTACT 49 0.592936379187324 0.9335488736091008 0.619963263022226 Y Y 3.2965682984157003 3.6068212591877504 3.2965682984157003 0 0.0 0.0 Y 0.0 N Y 1597 4586 ENSG00000156398 ENSG00000166272 + - 10 10 104498951 104576021 coding coding SFXN2 WBP1L 104474297 104503727 + + 0.0 104486554 104557750 + - N - - N SA470 10 0.0 1.78125 1 10 4 N Y 0.0 0.0 32 1.41220854852959 1.60654917447403 1.60654917447403 1.41220854852959 4 - - 0.9592256023457892 HCT116-unstranded 10.0 108225 GAGACATGTGATGCTGCTATTCTGAATGTCTGTCAGGATCCTGTGCGTTCTGTTGCCTGGTTTTGCCCACGTGGTGGAAGTGACTGGCCAGTGCAGTAGCATTAAGTTGAGTGTGGTGAGGCCTGTCGTGTCCCTGACTTCTGGGTCAGCACCGTGCCGTAACAGGCAGAGCAGACTCTGGGCCTTGTGGTACTTGGCAGCCAGATGGATGGGGATGATAGACTCTGTCGGC|ATTCTTCCAAATTAAAGTGAATCCCAGCTGATAGTCTTGGCGGGGCTGTTTTTTATTCTGTTCTCCAAAGCACTTGAGAAGGTTTTCAGGCACGCTCTTGACCGAGGAGTGCGTGTGCACCGTGGACAGGACCCTGAAGTGCTCACAGAGCAGCCTGTGCAGC 15 0.956651748526342 0.738301955792815 0.413214285429335 Y Y 3.58337693299909 3.51935717616377 3.51935717616377 0 0.9938805230216272 0.0 Y 0.0 N Y 463 2283 ENSG00000157999 ENSG00000106305 - + 7 7 6076017 6063465 coding coding ANKRD61 AIMP2 6071007 6048876 + + 0.0 6072470 6057676 - + N - 0.984738735662572 N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 12 1.45755469458329 0.997615213181455 1.45755469458329 0.997615213181455 4 - 36.25 0.990940289148492 HCT116-unstranded 10.0 951437 CTTTTCGAGGAAGCAGCTCAATTCCAAAAGCTGACGTGTTGTAGGCACCATAGAAGTCAATGTGCAAAGAAGCATAATAATTCACCAACACTGAAGTTGCAGCTAACAGAAAGGCTGAGCTGTACGTGTAAAACTTGAAAAGTGATCGTTGTGACAAGATCAGAACAATACTGGATGCAAATA|CACCTCAAGACACAATTTTTGGGCAGGTGAACAACCCTGGGCCCTCTTCGAAGGAACAGGATCCGGGAGCTGCGTGAGCATACAGGGACTGCCTGGGGCAACACGATTCCTCAGCTCCTGCAGGTGCTGCTCTGGAAGCGTCTCTCCCAGC 10 0.718245788849322 0.7289514491550291 0.39789106354260295 N Y 3.612079893993029 3.34256120966892 3.34256120966892 8 0.0 0.0 Y 0.0 N Y 6776 2394 ENSG00000170881 ENSG00000183665 - + 8 8 125500155 125474391 coding coding RNF139 TRMT12 125486979 125463048 + + 0.0 125498072 125463498 - + N - 0.687109851535038 N SA470 1 0.0 1.0 1 0 1 N N 0.0 0.0 11 1.14660969307219 0.8680547958851621 1.14660969307219 0.8680547958851621 4 - 21.1818181818182 0.9401565391762792 HCT116-unstranded 10.0 1102652 CAACCAGGTCAAGGGCAAGCCCGACCTGAACACGGCGCTGCCCGTGCGCCAGACGGCGTCCATCTTCAAGCAGCCGGTGACCAAGATTACCAACCACCCCAGCAACAAGGTCAAGAGCGACCCGCAGAAGGCGGTGGACCAGCCGCGCCA|GGCTGCAAGATCAAGGCCCTGCGGGCCAAGACAAACACCTACATCAAGACCCCAGTGCGGGGCGAGGAGCCGGTCTTCATCGTGACCGGCCGGAAGGAGGACGTGGAGATGGCCAAGCGTGAGATCCTGTCGGCGGCCGAACACTTCTCCATCATCCGCGCCACGCGCAGCAAGGCCGGGGGTCTGCCCGGCGCCGCCCAGGGCCCGCCCAACCTTCCCGGAC 11 0.928492200519453 0.920815858052512 0.788285013321283 N Y 3.31695745798465 3.36617336972692 3.31695745798465 0 0.0 0.00932263814616741 Y 0.00932263814616741 N Y 9555 6934 ENSG00000071655 ENSG00000181588 + - 19 19 1592882 1568057 coding coding MBD3 MEX3D 1576677 1554668 - - 0.0 1584539 1556922 - + N - - N SA470 1 0.0 1.0 1 0 1 Y N 0.0 0.0 7 0.8486207332907181 1.2632140686388602 1.2632140686388602 0.8486207332907181 4 - - 0.9932609216694972 HCT116-unstranded 10.0 950627 GATTTGTCCAAGATAGAAAAACATCCAGAAGCAGCAAACCTCCTTCTGAGACTGGATTTTGAAAAAGACATTAAGCAAATGCTTCTGTTTCTTAAAGATGTGGGTATAGAGGATAACCAACTGGGAGCATTCCTGACAAAAAATCATGCAATTTTCTCTGAAGACCTTGAAAATCTGAAGACCA|GTTTCAGCATCAGGCAAGTGGCTGGATGGTATTCGAAAATGGTATTACAATGCTGCAGGATTCAATAAACTGGGGTTAATGCGAGATGATACAATATACGAGGATGAAGATGTAAAAGAAGCCATAAGAAGACTTCCTGAGAACCTTTATAATGACAGGATGTTTCGCATTAAGAGGGCACTGGACCTGAACTTGAAGCATCAGATCTTGCCTA 20 0.398878234346157 0.8981152722604259 0.40446336013651296 Y Y 3.36720643949681 3.56488607910057 3.36720643949681 3 0.0 0.0 Y 0.0 N Y 823 33929 ENSG00000156469 ENSG00000156467 + - 8 8 97273838 97247862 coding coding MTERFD1 UQCRB 97251626 97238148 - - 0.0 97263134 97245455 - + N - - N SA470 3 0.0 1.77777777777778 1 10 2 N Y 0.0 0.0 18 1.18547781826108 1.39925250679996 1.39925250679996 1.18547781826108 4 - - 0.9426035659193 HCT116-unstranded 10.0 377888 GCCTTAGCCCGTGCAGATCTGGTAACCACCATCTTTCCGGCTCCCTCGCGACCACCACGACTTCCCTCTTCCCTGGCGCTCCGGAAATGCGTCAGAGAACTGCCTCGAGCGCGTTTTCCGCGCAGATCCGAGAATTCGCGAGAATCTCCGCCCAGCCAGTTCAGGCCAGGGCGGTCAGAGACAAAGGGCCTGGGTTTAAGTGTGCATTTCAGAG|CTTTTGGATCATTGTGAGTCAACAGCTGTATGTCAAATTGTTTAGCAAATGCAGTCAAATCTGGTGGCATCACACAGCAGGAGGCAAGATTAACTTGGTTACTATTTGGTTTTACCTAGAAGTGAAAATAAAATCATG 4 0.9558662160496 0.7300883887903009 0.5 Y Y 3.3828009725769 3.46910819465161 3.3828009725769 0 0.0 0.0 Y 0.0 N N 8944 662 ENSG00000067334 ENSG00000023909 - + 1 1 94345474 94374966 intron coding DNTTIP2 GCLM 94333373 94350761 - - 0.0 94344886 94360170 + - N 21.7643864010598 1.59195452533134 N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 7 1.15308771393701 0.693148232535167 1.15308771393701 0.693148232535167 4 2.14285714285714 11.2857142857143 0.992565606363912 HCT116-unstranded 10.0 1034056 TGGCAGTCGCAACCCATACTATTCGGACAGATGGCACAGAAACCGCTGCGCCTGGAGAAGTGGATACCAAAAAATGTGGTTCTGCTTTGGTTTCCAGTCTTGCCACGGGCTTGAAACCAAGATACCATTTTGCTGCTTTGGAAAAGACCTATTATGAGAGGCTTCCATATCG|GAACTTGATCTCAAAATAGCAATTAAGTCTTGTCGCCTAGAGCTAAGTACCAAAAACAGAGAACGATGGTGCCATGAAATCCAGATTATGAAGAAGTTGAACCATGCCAATGTTGTAAAGGCCTGTGATGTTCCTGAAGAATTGAATATTTTGATTCATGATGTGCCTCTTCTAGCAATGGAATACTG 13 1.0 0.382672299922764 0.312857719276693 Y Y 3.65488030998075 3.69784855983781 3.65488030998075 0 0.0 0.00856793145654822 Y 0.020163628164659 N Y 2161 3599 ENSG00000095485 ENSG00000213341 + - 10 10 102027437 101989376 coding coding CWF19L1 CHUK 101992050 101948055 - - 0.0 102013178 101985774 - + N - - N SA470 1 0.0 1.0 1 0 2 N Y 0.0 0.0 7 0.82270864983146 1.20491188085552 1.20491188085552 0.82270864983146 4 - - 0.989027350018282 HCT116-unstranded 10.0 1036559 CCCTGGCCAAAGGAGGCTTATCTGATGACCATGTCCTCATCCTGCCTATTGGACACTACCAGTCAGTGGTGGAGCTTTCAGCAGAGGTGGTAGAAGAGGTGGAGAAGTATAAGGCCACTCTGAGACGGTTCTTTAAGAGTCGAGGGAAATGGTGTGTTGTATTTGAGAGAAATTATAAGAGCCATCACCTCCAGCTACAG|GAACTTGATCTCAAAATAGCAATTAAGTCTTGTCGCCTAGAGCTAAGTACCAAAAACAGAGAACGATGGTGCCATGAAATCCAGATTATGAAGAAGTTGAACCATGCCAATGTTGTAAAGGCCTGTGATGTTCCTGAAGAATTGAATATTTTGATTCATGATGTGCCTCTTCTAGCA 15 0.775122487449182 0.531839600715839 0.5310104500676861 Y Y 3.44975210485255 3.69784855983781 3.44975210485255 1 0.0 0.0 Y 0.0 N Y 2161 3599 ENSG00000095485 ENSG00000213341 + - 10 10 102027437 101989376 coding coding CWF19L1 CHUK 101992050 101948055 - - 0.0 101997779 101985774 - + N - - N SA470 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 8 1.21786792258515 1.06887344269442 1.21786792258515 1.06887344269442 4 - - 0.9909758426747808 HCT116-unstranded 10.0 950438 ATGTAATTAAAGTATTGCTTGGTAGAAAAGTCAATTGGCATGATTTTGCTTTTTTTGATCCTGTAATGTATGAGAGTTTGCGGCAACTAATCCTCGCGTCTCAGAGTTCAGATGCTGATGCTGTTTTCTCAGCAATGGATTTGGCATTTGCAATTGACCTGTGTAAAGAAGAAGGTGGAGGACA|GAGATCATCTTCAGACACCAACGAAAGTGAAATAAAGTCAAATGAAGAGCCACTCCTAAGAAAGAGTTCTCGCCGGTTTGTCATCTTTCCAATCCAGTACCCTGATATTTGGAAAATGTATAAACAGGCACAGGCTTCCTTCTGGACAGCAGAAGAGGTCGACTTATCAAAGGATCTCCCTCACTGGAACAAGCTTAAAGCAGATGAGAAGTACTTCATCTC 15 0.86969113304151 0.693843784281908 0.514108465825272 Y Y 3.48912663185998 3.37295958784206 3.37295958784206 0 0.0 0.0 Y 0.0 N Y 7838 3373 ENSG00000104517 ENSG00000048392 + - 8 8 103425069 103251346 coding coding UBR5 RRM2B 103264501 103216730 - - 0.0 103274143 103244532 - + N - - N SA470 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 18 1.17252177653145 1.39925250679996 1.39925250679996 1.17252177653145 4 - - 0.985231059099993 HCT116-unstranded 10.0 950439 GTAGAAAAGTCAATTGGCATGATTTTGCTTTTTTTGATCCTGTAATGTATGAGAGTTTGCGGCAACTAATCCTCGCGTCTCAGAGTTCAGATGCTGATGCTGTTTTCTCAGCAATGGATTTGGCATTTGCAATTGACCTGTGTAAAGAAGAAGGTGGAGGACA|GAGATCATCTTCAGACACCAACGAAAGTGAAATAAAGTCAAATGAAGAGCCACTCCTAAGAAAGAGTTCTCGCCGGTTTGTCATCTTTCCAATCCAGTACCCTGATATTTGGAAAATGTATAAACAGGCACAGGCTTCCTTCTGGACAGCAGAAGAGGTCGACTTATCAAAGGATCTCCCTCACTGGAACAAGCTTAAAGCAGATGAGAAGTACTTCATCTCTCACATCTTAGCCTTTTTTGCAGCCAGTGATGGAATTGTAAATGAAAATTTGGTGGAGCGCTTTAGTCAGGAGGTGCAGGTTCCAGAGGCTCGCTGTTTCTATGG 13 1.1141916878993301e-07 0.901597674330951 0.572959535844012 Y Y 3.48912663185998 3.37295958784206 3.37295958784206 0 0.0 0.0 Y 0.0 N Y 7838 3373 ENSG00000104517 ENSG00000048392 + - 8 8 103425069 103251346 coding coding UBR5 RRM2B 103264501 103216730 - - 0.0 103274143 103244532 - + N - - N SA470 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 9 0.82270864983146 1.14013167220738 1.14013167220738 0.82270864983146 4 - - 0.968700687052198 HCT116-unstranded 10.0 692368 TAGCCTTCCGCCTTCCCCAAGCCAACGTCTCCGCCGTCGGCTCCGCGGCGCCGCCATGGCCGACGTGGAAGACGGAGAGGAAACCTGCGCCCTGGCCTCTCACTCCGGGAGCTCAGGCTCCAAGTCGGGAGGCGACAAGATGTTCTCCCTCAAGAAGTGGAACGCGGTGGCCATGTGGAGCTGGGACGTGGAGTGCGATACGTGCGCCATCTGCAGGGTCCAGGTGATGG|CACTTACCACCATCTGTGGTGGGTTGGAAAACATGGCCACAGTATTTTACAGCTACTCCTATCAACCTGGGCTAGGCTTGTGACCAGTAGAATGTGGCAGAAGTTAACGGTGTATCAGCTCCAGAGCCTGGAACTGAAGAGATCTTGCAGCTTCTGCCTTCACCCTTTTGGAAAACT 34 0.952605114474437 0.550477228701907 0.6775872448335749 Y Y 3.60785432895764 3.46720988898117 3.46720988898117 0 0.0 0.0 Y 0.0 N N 4020 1504 ENSG00000114125 ENSG00000114124 + - 3 3 141466402 141537332 coding upstream RNF7 GRK7 141457046 141496990 + + 0.0 141457358 141484271 + - N - - N SA470 1 0.686813186813187 1.0 1 0 2 N Y 0.0 0.686813186813187 29 1.52233490323144 1.17899979739626 1.52233490323144 1.17899979739626 4 - - 0.988418854800016 HCT116-unstranded 10.0 860280 TGCATAAGAACATAGGAGGCTCTGAGACCTTTCAGGACAAGGTGAACTTTTTCCAGCGAGAGCTTCGGCAGGTACATATGAAAAGACCACATTCCAAAGTCACCCTGAAGGTCAGCAGACATGCCTTGTTGGAATCGTCTCTGAAAGCCACTCGGAATTTCTCCATCTCAGATTGGAGCAAGAACTTTGAGGTTGTTTTCCAGGATGAAGAAG|CCGTTTGCGAGCCGCCGTGCCAGAACCGGGGCTCCTGCAGCCGCCCGCAGCTCTGTGTCTGCCGCTCTGGTTTCCGTGGAGCCCGCTGCG 4 0.0372815348497797 0.701464803099367 0.6558379581146451 N Y 3.3791139637714305 3.4210491438586 3.3791139637714305 0 0.0 0.0 Y 0.0 N Y 3308 2527 ENSG00000119682 ENSG00000119681 + - 14 14 75179818 75079306 coding coding KIAA0317 LTBP2 75119880 74964873 - - 0.0 75138111 75052821 - + N - - N SA470 1 0.0 1.0 1 0 2 Y N 0.0 0.0 5 0.855098754155533 0.7644064620481279 0.855098754155533 0.7644064620481279 4 - - 0.991240892989256 HCT116-unstranded 10.0 860282 CAAAGCCCATGCAGTAGTTGTTGGTGGCTCATGGCATTTCAGAGAAAAGGTCATGAGGTGGTTTTGGACTGTGGTTTCCAGTCTGACCCAGGAGGAGTTGGCTCGGCTACTTCAGTTCACAACAGGCTCCTCTCAGCTACCACCTGGAGGCTTTGCCGCCCTCTGTCCCTCATTTCAGATTATTGCCGCTCCGACCCATAGCACGCTGCCTACTGCACACACATG|GAGGAACGTCTGCGGGGGACAGTGCTGCCCAGGATGGACAACAGCAAACAGCACCAACCACTGTATCAAACCCGTTTGCGAGCCGCCGTGCCAGAACCGGGGCTCCTGCAGCCGCCCGCAGCTCTGTGTCTGCCGCTCTGGTTTCCGTGGAGCCCGCTGCGAGGAGGTCATTCCCGATGAGGAATTTGACCCCCAGAACTCCAGGCTGGCACCTCGACGCTGGGCCGAGCGTTCAC 5 0.469859484938927 0.654899754296053 0.298308983416625 N Y 3.30016202126533 3.43681151080804 3.30016202126533 0 0.0 0.0 Y 0.0 N Y 3308 2527 ENSG00000119682 ENSG00000119681 + - 14 14 75179818 75079306 coding coding KIAA0317 LTBP2 75119880 74964873 - - 0.0 75130602 75070408 - + N - - N SA470 1 0.0 1.0 1 0 2 Y N 0.0 0.0 10 1.327994277287 1.4381206319888502 1.4381206319888502 1.327994277287 4 - - 0.978794807815745 HCT116-unstranded 10.0 941765 CGTAGGAGAGACCATGACTGAGGAACAGTCCCAGAGCTTCCTGACAGAGTTCATCAACTACATCAAGCAGTCCAAGGTTGTGCTCTTGGAAGACCTGGCTTCCCAGGTGGGCCTACGCACTCAGGACACCATAAATCGCATCCAGGACCTGCTGGCTGAGGGGACTATAAC|AGTGCCCCCCTGGCTTAGTCATGGCGAAGCTGGAGACGCTGCCTGTGCGCGCTGACCCAGGGCGGGATCCTCTCCTGGCCTTTGCCCCACGGCCCTCCGAGCTTGGACCCCCGGACCCCCGCCTGGCCATGGGCAGCGTGGGCAGTGGGGTGGCCCATGCCCAGGAGTTTGCCATGAAGAGCGTGGGTACCCG 5 0.931539183706785 0.654899754296053 0.27506412780261896 Y Y 3.6161681303826296 3.63296356710195 3.6161681303826296 0 0.0 0.0 Y 0.0 N Y 2060 1315 ENSG00000198171 ENSG00000088899 + - 20 20 3185331 3154192 coding utr5p DDRGK1 RP5-1187M17.10 3170996 3143263 - - 0.0 3171836 3147827 - + N - 6.17496197541458 N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 6 0.9781811505870108 1.14013167220738 1.14013167220738 0.9781811505870108 4 - 4.66666666666667 0.981554313748411 HCT116-unstranded 10.0 167531 GTATTTAATGGGGCCCAGAATGGTGTGTCTCAGCTAATCCAAAGGGAGTTTCAGACCAGTGCAATCAGCAGAGACATTGATACTGCTGCCAAATTTATTGGTGCAGGTGCTGCAACAGTAGGAGTGGCTGGTTCTGGTGCTGGTATTGGAACAGTCTTTGGCAGCCTTATCATTGGTTATGCC|AGGGTACTAGATGGAAACTTGAGAAAGGACTGCTTATTGATAACAGCTAAGGTATTCCTGGAAGCAGAGTAAATAAAGCTCATGGCCCACCAGCTAGAAAGTATTCTTGCCATGAGAAAAAGAATGTGATAAGTTATTCAACTTATGAAATTCAAGTTACATGTGAATTCTGCCAGGCAATACAAGGACCTGTG 16 1.0 0.792919267634395 0.7396038553450079 Y Y 3.69784855983781 3.27551679143744 3.27551679143744 1 0.0 0.0 Y 0.0 N Y 30418 2565 ENSG00000154518 ENSG00000115966 + - 2 2 176049335 176033110 coding utr5p ATP5G3 ATF2 176040986 175936978 - - 0.0 176043785 176015886 - + N - - N SA470 2 0.0 1.11111111111111 1 2 2 Y Y 0.0 0.0 18 1.16604375566664 1.24378000604441 1.24378000604441 1.16604375566664 4 - - 0.9930660464828692 HCT116-unstranded 10.0 1133797 CACCGTAAACCTGCGTTAAAATGTGGAAGCTGCTGCTTCATTAGGCCTTGTTTATAACGATGTACCCATGCACTACGGAATTCTATTGCTAAGAAAGTGGGAGCATAGGCAAGGCATTGGGAACACAGGGTAGCTGCTGTTGCTCTTGCTCTCACCCCTGTTGACACCA|CAGGCAAAAACTCGAAGGAAGCATCCAGGTGCATTATACCAGGACCCCAATTGTTAAGCTTAGAAATTCCAAGAGCGGGCGACGTCATGACGCAAAGGCCCCGCCCCGGAAGAAGCCCTAGACGCGTAAATAAGACGCCGACCGGCGCGGCGCTAGCCTCGGGGCTTGACGGGATTGTGGCGGTCCTCTCTCC 7 0.9683762802597712 0.170144845834242 0.202165942134126 Y Y 3.3116589703860098 3.684245618384 3.3116589703860098 1 0.0 0.0 Y 0.0 N N 10147 12446 ENSG00000132912 ENSG00000086589 + - 5 5 150138671 150080669 utr3p upstream DCTN4 RBM22 150088002 150070356 - - 0.0 150090505 150080778 - + N - - N SA470 1 0.0 1.0 1 0 3 N Y 0.0 0.0 7 1.04296135923516 1.15956573480182 1.15956573480182 1.04296135923516 4 - - 0.932735234187904 HCT116-unstranded 10.0 1133798 GTTACAGCCTGACTTCCAGCCAGTCTGTGCTTCACAGCTCTATCCTCGCCACAAACATCTTCTGATCAAACGGTCCCTGCGCTGCCGTAAATGTGAACATAATTTGAGCAAGCCAGAATTTAACCCAACGTCAATCAAATTCAAAATCCAGCTGGTCGCTGT|GCAAAAACTCGAAGGAAGCATCCAGGTGCATTATACCAGGACCCCAATTGTTAAGCTTAGAAATTCCAAGAGCGGGCGACGTCATGACGCAAAGGCCCCGCCCCGGAAGAAGCCCTAGACGCGTAAATAAGACGCCGACCGGCGCGGCGCTAGCCTCGGGGCTT 5 0.897678990410331 0.154980973174966 0.46598391365964 Y Y 3.4342508577283 3.684245618384 3.4342508577283 0 0.0 0.0 Y 0.0 N N 10147 12446 ENSG00000132912 ENSG00000086589 + - 5 5 150138671 150080669 coding upstream DCTN4 RBM22 150088002 150070356 - - 0.0 150102469 150080775 - + N - - N SA470 1 0.0 1.0 1 0 3 N Y 0.0 0.0 7 0.816230628966645 0.8486207332907181 0.8486207332907181 0.816230628966645 4 - - 0.9432248950397648 HCT116-unstranded 10.0 967999 AGATTGTCCAAAACAAAGAAACATGTCAGCAGGGCCTATGGTGGTTCCATGTGTGCTAAATGTGTTCGTGACAGGATCAAGCGTGCTTTCCTTATCGAGGAGCAGAAAATCGTTGTGAAAGTGTTGAAGGCACAAGCACAGAGTCAGAAAGCTAAATAAAAAAATGAAACTTTTTTGAGTAATAAAAATGAAAAGACGCTG|AATAATTTATGATGTTATTGTTGAACCTCCAAGTGTCGGTTCTATGACTGATGAACATGGGCATCAGAGGCCAGTAGCTTTCTTGGCCTACAGAGTAAATGGACAATATATTATGGAAGGACTTGCATCCAGCTTCCTATTTACAATGGGAGGTTTAGGTTTCATAATCCTGGACCGATCGAATGCACCAAATATCCCAAAACTCAATAGATTCCTTCT 56 1.0 0.761666328136843 0.707592125432524 Y Y 2.9736310652528704 3.57080706131517 2.9736310652528704 3 0.0 0.0 Y 0.002375296912113911 N Y 43201 6837 ENSG00000109475 ENSG00000198856 + - 4 4 109551568 109588976 utr3p coding RPL34 OSTC 109541722 109571740 + + 0.0 109546409 109576720 + - N - - N SA470 63 0.0 19.1212121212121 2 33 11 N Y 0.0 0.0 33 1.327994277287 1.41220854852959 1.41220854852959 1.327994277287 4 - - 0.949795682083938 HCT116-unstranded 10.0 966284 CTGTAAGACCTAAAGTTCTTATGAGATTGTCCAAAACAAAGAAACATGTCAGCAGGGCCTATGGTGGTTCCATGTGTGCTAAATGTGTTCGTGACAGGATCAAGCGTGCTTTCCTTATCGAGGAGCAGAAAATCGTTGTGAAAGTGTTGAAGGCACAAGCACAGAGTCAGAAAGCTAAATAAAAAAATGAAACTTTTTTGAGTAATAAAAATGAAAAGACGCT|GGGCTATCTGATGGGTTAGAGTGCCTTTGAGAAGAAATCAGTGGATACTGGATTTGCTCCTGTCAATGAAGTTTTAAAGGCTGTACCAATCCTCTAATATGAAATGTGGAAAAGAATGAAGAGCAGCAGTAAAAGAAATATCTAGTGAAAAAACAGGAAGCGTATTGAAGCTTGGACTAGAATTTCTTCTTGGTATTA 38 0.853654039815033 0.9413377402059392 0.729436345777175 Y Y 2.94533867941286 3.4325554405491 2.94533867941286 3 0.0 0.0 Y 0.0 N Y 43201 6837 ENSG00000109475 ENSG00000198856 + - 4 4 109551568 109588976 utr3p coding RPL34 OSTC 109541722 109571740 + + 0.0 109546409 109588403 + - N - - N SA470 60 0.0 24.2 2 35 11 N Y 0.0 0.0 35 1.47051073631292 1.30208219382774 1.47051073631292 1.30208219382774 4 - - 0.949795682083938 HCT116-unstranded 10.0 967997 TGTCCCGAACCCCTGGTAATAGAATTGTTTACCTTTATACCAAGAAGGTTGGGAAAGCACCAAAATCTGCATGTGGTGTGTGCCCAGGCAGACTTCGAGGGGTTCGTGCTGTAAGACCTAAAGTTCTTATGAGATTGTCCAAAACAAAGAAACATGTCAGCAGGGCCTATGGTGGTTCCATGTGTGCTAAATGTGTTCGTGAC|AGGAATAATTTATGATGTTATTGTTGAACCTCCAAGTGTCGGTTCTATGACTGATGAACATGGGCATCAGAGGCCAGTAGCTTTCTTGGCCTACAGAGTAAATGGACAATATATTATGGAAGGACTTGCATCCAGCTTCCTATTTACAATGGGAGGTTTAGGTTTCATAATCCTGGACCGATCGAATGCACCAAATATCCCAAAACTCAATAGATTCCTTCTTCTGTTCATTGGATTCGTCTGTG 229 1.0 0.8378529582913579 0.6096987413579841 Y Y 3.47907756046244 3.54144175291192 3.47907756046244 4 0.0 0.0 Y 0.0 N Y 43201 6837 ENSG00000109475 ENSG00000198856 + - 4 4 109551568 109588976 coding coding RPL34 OSTC 109541722 109571740 + + 0.0 109543774 109576720 + - N - - N SA470 78 0.0 24.541176470588198 1 168 11 N Y 0.0 0.0 170 1.36686240247589 1.60007115360922 1.60007115360922 1.36686240247589 4 - - 0.9363043069352992 HCT116-unstranded 10.0 966525 GTCCCGAACCCCTGGTAATAGAATTGTTTACCTTTATACCAAGAAGGTTGGGAAAGCACCAAAATCTGCATGTGGTGTGTGCCCAGGCAGACTTCGAGGGGTTCGTGCTGTAAGACCTAAAGTTCTTATGAGATTGTCCAAAACAAAGAAACATGTCAGCAGGGCCTATGGTGGTTCCATGTGTGCTAAATGTGTTCGTGACAGG|GGCTATCTGATGGGTTAGAGTGCCTTTGAGAAGAAATCAGTGGATACTGGATTTGCTCCTGTCAATGAAGTTTTAAAGGCTGTACCAATCCTCTAATATGAAATGTGGAAAAGAATGAAGAGCAGCAGTAAAAGAAATATCTAGTGAAAAAACAGGAAGCGTATTGAAGCTTGGACTAGAATTTCTTCTTGGTATTAAAGAGACAAGTTTATCACAGAATTTTTTTTCCTGCT 71 0.5992155249495831 0.603675388617377 0.612192928319026 Y Y 3.5303596117444904 3.47552369040616 3.47552369040616 2 0.0 0.0 Y 0.00714484138007665 N Y 43201 6837 ENSG00000109475 ENSG00000198856 + - 4 4 109551568 109588976 coding coding RPL34 OSTC 109541722 109571740 + + 0.0 109543774 109588403 + - N - - N SA470 78 0.0 30.071428571428598 2 56 11 N Y 0.0 0.0 56 1.35390636074626 1.52233490323144 1.52233490323144 1.35390636074626 4 - - 0.902251637157234 HCT116-unstranded 10.0 650681 GGACTTCCGGCTGGTCTGTGGGGTTTCGGGTTCGGGGTTTCCTGGTGGGCGTCAGGGGCAGGCAACAGAGTGGCGGCCGCTACGGCCCTGTAACAGGGCCATGGAGAAGCTGCGGCGAGTCCTGAGCGGCCAGGACGACGAGGAGCAGGGCCTGACTGCGCAG|CTCCAGCCCGCTTTTCTCTGTGAAGCAGGATGTGTCCGGGGCCGCAGAGCTGCATCTACTGGCGGTGCCTTTCCCGCCGTCTCGAAGGCACGGAGAGGCTACAGGGGATTTTCTCTGAAACGTGCAGGGCCTCCACCTGTGACTCCGGAAGGCTGCCGGCTCCCCCAGGGGAATGCTCCTGG 10 0.9994488295057288 0.302919077937825 0.169635587479685 Y Y 3.14887652049892 3.51935717616377 3.14887652049892 0 0.0 0.0 Y 0.0 N N 1828 543 ENSG00000198818 ENSG00000176381 + - 6 6 166756079 166721936 coding upstream SFT2D1 PRR18 166733216 166719168 - - 0.0 166755907 166722311 - + N - - N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 20 0.997615213181455 0.958747087992567 0.997615213181455 0.958747087992567 4 - - 0.971473909783619 HCT116-unstranded 10.0 651565 CAGCTACAGATTTCTGGGGAGCACTCCAGCCGAGGCCTGCAGTGTGGGGCCCCCCTCAGTCTTGTGGACCTGGCCGGGAGTGAGCGACTTGACCCCGGCTTAGCCCTCGGCCCCGGGGAGCGGGAACGCCTTCGGGAAACACAGGCCATTAACAGCAGCCTGTCCACGCTGGGGCTGGTTATCATGGCCCTGAGCAACAAG|GCCCCCCCAGGATGCAATGGCGCAGCCCCCCCGGCTGAGCCGCTCTGGTGCCTCCTCACTTTGGGACCCAGCTTCTCCTGCTCCCACCTCTGGCCCCAGGCCTCGGCTTTGGGAGGGTCAAGATGTGCTGGCCAGATGGACTGATGGGCTGCTATACTTGGGTACCATCAAAAAGGTGGACAGTGCTAGGGAGGTGTGTCTGGTCCAGTTTGAGGATGATTC 33 1.0 0.929188411159344 0.259573526931734 Y Y 3.71294857937794 2.9291657373094906 2.9291657373094906 0 0.0 0.0 Y 0.0 N Y 20092 2167 ENSG00000237649 ENSG00000112511 + - 6 6 33377701 33384230 coding utr5p KIFC1 PHF1 33359313 33378176 + + 0.0 33374263 33380025 + - N - - N SA470 1 0.0 1.0 1 0 2 N Y 0.0 0.0 28 1.30208219382774 1.46403271544811 1.46403271544811 1.30208219382774 4 - - 0.982864669671618 HCT116-unstranded 10.0 1100366 ACACCCTGGACCTGGTGGTGATCGGCGCCTACCTGGGCCGGGGGAAGCGGGCCGGCCGGTACGGGGGCTTCCTGCTGGCCTCCTACGACGAGGACAGTGAGGAGCTGCAGGCCATATGCAAGCTTGGAACTGGCTTCAGTGATGAGGAGCTGGAGGAGCATCACCAGAGCCTCAAG|AAGGGTGACATCACTAAGGAAGCCTGGAAAGTCCCAGCCCTCCACGTGATCCCACGGATGAAAATAGCTCCGGGTGAGCTCTGGAACAGCTGAAAAAGCTGGAGCAACCAAGCAGGGCCTACAAGCCGAGGAGGGCTGTTTAAAGGCGCAGGGGCCATTTTACCTCC 24 0.368053441338802 0.5011795215270011 0.5556591724824029 Y Y 3.40375919359932 3.4451253122330296 3.40375919359932 0 0.0 0.0 Y 0.0 N N 13051 539 ENSG00000105486 ENSG00000105499 + - 19 19 48673601 48614109 coding upstream LIG1 PLA2G4C 48618703 48551100 - - 0.0 48622394 48614161 - + N - - N SA470 1 0.0 1.0 1 0 3 N Y 0.0 0.0 9 1.14660969307219 1.04296135923516 1.14660969307219 1.04296135923516 4 - - 0.98724622535452 HCT116-unstranded 10.0 1102324 TCCTCCTGGTCCTGAGCAGGGCCAACCTGGAGGTAAAATGGCCCCTGCGCCTTTAAACAGCCCTCCTCGGCTTGTAGGCCCTGCTTGGTTGCTCCAGCTTTTTCAGCTGTTCCAGAGCTCACCCGGAGCTATTTTCATCCGTGGGATCACGTGGAGGGCTGGGACTTTCCAGGCTTCCTTAGTGATGTCACCCTT|CTTGAGCCAGTTGTGCGATCTCTTGGCGATCTCGTAGGTGGCATCAACATCCAGGGTCTTCACCATCAGCCCCTCGCAGGAGTCTGAGGGAGACACAGAAGCGTGGTCCTTGGGAAGCCCTGGCTCACAAGCGCCGGAGCAGGCAGGATTCTGGTCAAACGGTCCAGGACTGGGGACAG 12 0.29484996967111304 0.343540387268283 0.4727158981234551 Y Y 3.4451253122330296 3.66016945000958 3.4451253122330296 0 0.0 0.0 Y 0.0 N N 539 13051 ENSG00000105499 ENSG00000105486 - + 19 19 48614109 48673601 upstream coding PLA2G4C LIG1 48551100 48618703 - - 0.0 48614161 48626191 + - N - 0.732673285393546 N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 15 1.327994277287 1.12717563047775 1.327994277287 1.12717563047775 4 - 52.9333333333333 0.908720749499647 HCT116-unstranded 10.0 1100365 GTCCCTGGTACGTGAGCCCCTTTCCCGGCGCCGGCAGCTGCTCCGGGAGAACTTTGTGGAGACAGAGGGCGAGTTTGTCTTCGCCACCTCCCTGGACACCAAGGACATCGAGCAGATCGCCGAGTTCCTGGAGCAGTCAGTGAAAGACTCCTGCGAGGGGCTGATGGTGAAGACCCTGGATGTTGATGCCACCTACGAGATCGCCAAGAGATCGCACAACTGGCTCAAG|AAGGGTGACATCACTAAGGAAGCCTGGAAAGTCCCAGCCCTCCACGTGATCCCACGGATGAAAATAGCTCCGGGTGAGCTCTGGAACAGCTGAAAAAGCTGGAGCAACCAAGCAGGGCCTACAAGCCGAGGAGGGCTGTTTAAAGGCGCA 14 0.595211409953561 0.213578032896874 0.331647614020611 Y Y 3.66016945000958 3.4451253122330296 3.4451253122330296 0 0.0 0.0 Y 0.0 N N 13051 539 ENSG00000105486 ENSG00000105499 + - 19 19 48673601 48614109 coding upstream LIG1 PLA2G4C 48618703 48551100 - - 0.0 48626191 48614161 - + N - - N SA470 1 0.0 1.0 1 0 3 N Y 0.0 0.0 10 1.13365365134256 0.984659171451826 1.13365365134256 0.984659171451826 4 - - 0.9220878198983828 HCT116-unstranded 10.0 1100369 CAGAGCCTCAAGGCGCTGGTGCTGCCCAGCCCACGCCCTTACGTGCGGATAGATGGCGCTGTGATTCCCGACCACTGGCTGGACCCCAGCGCTGTGTGGGAGGTGAAGTGCGCTGACCTCTCCCTCTCTCCCATCTACCCTGCTGCGCGGGGCCTG|AAGGGTGACATCACTAAGGAAGCCTGGAAAGTCCCAGCCCTCCACGTGATCCCACGGATGAAAATAGCTCCGGGTGAGCTCTGGAACAGCTGAAAAAGCTGGAGCAACCAAGCAGGGCCTACAAGCCGAGGAGGGCTGTTTAAAGGCGCAGGGGCCATTTTACCTCC 17 0.764466827080605 0.398594363524638 0.252666363954424 Y Y 2.88680640169925 3.4451253122330296 2.88680640169925 0 0.0 0.0 Y 0.0 N N 13051 539 ENSG00000105486 ENSG00000105499 + - 19 19 48673601 48614109 coding upstream LIG1 PLA2G4C 48618703 48551100 - - 0.0 48620895 48614161 - + N - - N SA470 1 0.0 1.0 1 0 3 N Y 0.0 0.0 14 0.984659171451826 1.1077415678833 1.1077415678833 0.984659171451826 4 - - 0.971288441686692 HCT116-unstranded 10.0 732291 GTGAGCTGGAACTTGCAGACAGGGACGGGCAGCCGGGCTGCACGACAGCCACATGCCCCATTCAGGGAGCCCCAGACTCTGGTAAATGCTCTGCTTCCTCCTGCCTGGATACTTCTAATGACCCTGACGACCTGGACGTGCTCAGAACCCGGCATGCCAGGCACACCCGGAAGCGGAGGCGGCTGGTGTGAGCAG|CAGCCTGCCTGCTGAGGCCATGTCGGACTACGAGAACGATGACGAGTGCTGGAGCGTCCTGGAGGGCTTCCGGGTGACGCTCACCTCGGTCATCGACCCCTCACGCATCACACCTTACCTGCGGCAGTGCAAGGTCCTGAACCCCGATGATGAGGAGCAGGTGCTCAGCGACCCCAACCTGGTCATCCGCAAACGGAAAGTGGGTGTGCTCCTGGACATCC 14 1.0 0.822084352857856 0.440332701924784 Y Y 3.33208798274832 3.7308075910906897 3.33208798274832 0 0.0 0.0 Y 0.0 N Y 6308 432 ENSG00000165684 ENSG00000187796 + - 9 9 139293249 139268133 utr3p utr5p SNAPC4 CARD9 139270029 139256355 - - 0.0 139270801 139266546 - + N - - N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 24 1.2632140686388602 1.26969208950367 1.26969208950367 1.2632140686388602 4 - - 0.992565606363912 HCT116-unstranded 10.0 694000 ATGGAACAGCTGAAGTATGCTGAATTACGAGCACGACAGCAAATGGAACAGCAGCAGCATGGCCAGAACCCTCAACAGGCACACCAGCACTCAGGAGGACCTGGCCTGGCCCCACTTGGAGCAGCAGGGCACCCTGGCATGATGCCTCATCAACAGCCCCCTCCCTACCCTCTGATGCACCACCAGATGCCACCACCTCATCCACCCCAGCCAG|CGCGTGAGGCGGGCAGCGCGGTTGAGGCCGAAGAGCTGGTGAAGGGCAGCCCGGCGTGGGAGCCGCCTGCCAACGACACGCGGGAAGAAGCCGGCCCACCAGCGGCTGGGGAAGATGAGGCGTCGTGGACGGCGCCCGGTGGCGAGCTGGCCGGGCCAGAAGAGGTGCTGCAGGAGTCGGCTGCGGTGACCGGCACCGCCTGGCTGGAAGCTGACA 24 0.760969143245108 0.734998339206447 0.31044878736179304 Y Y 2.92082900794555 3.2039735616624303 2.92082900794555 1 0.0 0.0 Y 0.0 N Y 21920 1852 ENSG00000173473 ENSG00000114646 + - 3 3 47823596 47622282 coding coding SMARCC1 CSPG5 47626762 47603729 - - 0.0 47651556 47619418 - + N - - N SA470 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 21 1.40573052766478 1.43164261112404 1.43164261112404 1.40573052766478 4 - - 0.982864669671618 HCT116-unstranded 10.0 693999 CACCTCATCCACCCCAGCCAGGTCAGATACCAGGCCCAGGTTCCATGATGCCCGGGCAGCACATGCCAGGCCGCATGATTCCCACTGTTGCAGCCAACATCCACCCCTCTGGGAGTGGCCCTACCCCTCCTGGCATGCCACCAATGCCAGGAAACATCTTAGGACCCCGGGTACCCCTGACAGCACCTAACGGCATGT|CGCGTGAGGCGGGCAGCGCGGTTGAGGCCGAAGAGCTGGTGAAGGGCAGCCCGGCGTGGGAGCCGCCTGCCAACGACACGCGGGAAGAAGCCGGCCCACCAGCGGCTGGGGAAGATGAGGCGTCGTGGACGGCGCCCGGTGGCGAGCTGGCCGGGCCAGAAGAGGTGCTGCAGGAGTCGGCTGCGGTGACCGGCACCGCCTGGCTGGAAGCTGACAGCCCA 5 0.369336850181069 0.3020357043132461 0.322407103954562 Y Y 3.5587317031712 3.2039735616624303 3.2039735616624303 0 0.0 0.0 Y 0.0 N Y 21920 1852 ENSG00000173473 ENSG00000114646 + - 3 3 47823596 47622282 coding coding SMARCC1 CSPG5 47626762 47603729 - - 0.0 47632151 47619418 - + N - - N SA470 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 7 1.24378000604441 1.16604375566664 1.24378000604441 1.16604375566664 4 - - 0.975205507622519 HCT116-unstranded 10.0 693679 AGTTCACTCAGCTGATGACATTGCCCAAAACCTTACAGCAACAGATAAATCATATTATGGACCCTCCTGGAAAAAACAGAGATGTGGAAGAAACTTTATTCCAAGTGGCTCATGATCCCGACTGTGGAGATGTGGTGCGACTAGGGCTTTCAGCAATCGTGAGACCGTCTAGTATAAGACAGAGCACGAAAGGCATTTTTACTGCT|GGCTCCAACCAGGAATGGAGACGCCATTGGATGTTTTGTCCAGGGCAGCATCTCTGGTGCATGCTGATGACGAAAAACGCGAAGCTGCTCTCAGGGGAGAACCCAGAATACAGACCCTGCCGGTGGCCTCTGCCCTCAGCAGTCACCGCACCGGCCCTCCCCCAATCAGCCCCAGCAAGAGGAAGTTCAGCATGGAGCCAGGTGACGAGGACCTAGACTGTGA 7 1.0 0.25169175383168696 0.6878473303056399 Y Y 3.56129235625094 3.73912139251568 3.56129235625094 0 0.0 0.0 Y 0.0 N Y 383 2261 ENSG00000144559 ENSG00000144560 + - 3 3 11888393 11762220 coding utr5p TAMM41 VGLL4 11831916 11597544 - - 0.0 11849307 11744521 - + N - - N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 11 1.26969208950367 1.18547781826108 1.26969208950367 1.18547781826108 4 - - 0.982667312131823 HCT116-unstranded 10.0 161332 GAGATAGCCCTGTCACCAAAGCCAGGCCCTTGGGGTGTCTGCAGGGACGAGAGGAGGGCAGGCAGGGGAACCTGAGGTGGGGACCTCTGGCTTGAACATCACTTTGTCCCCAAGCAGCTGGTGGACTTGAAGCTGACAGTGGATGGGCTGGAGAAGGAACGTGACTTCTACTTCAGCAAACTTCGTGACATCGAGCTCAT|CAAGTCTCTCAATGCCGTGGCCTTCACATCGACGCTCAATGAACGTTCTCAGAAGGGAATCTCCTCTCCTCCCGGCCTCTTCGCCTGGGCGGGGGCCGCAGGCTGCCGCGGAAGCCTCTTCCCGATGCTCTTCGCTCAGGAGAGCCCGGCCCAGGAGAGGGACTACAAGTCCCAGGCTGCC 3 0.242272561348942 0.8786265209297751 0.938385565576966 Y Y 3.59272380419397 3.69209541149257 3.59272380419397 0 0.0 0.0 Y 0.0 N N 505 4890 ENSG00000084764 ENSG00000119777 + - 2 2 27250064 27264563 coding upstream MAPRE3 TMEM214 27193480 27255778 + + 0.0 27248830 27255586 + - N 0.566798356602451 - N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 5 0.82270864983146 0.524719690049986 0.82270864983146 0.524719690049986 4 18.2 - 0.971257378786628 HCT116-unstranded 10.0 693948 AGAGCTTTGAGAAAAGCGTGCGAGAGGATGCCTCACCTCTGCCCCATGTCTGTTGCTGCAAACAAGATGCTCTCATCCTCCAGCGTGGCCTTCATCATGAAGACGGCAGCCAGCACATCGGCCTCCTGCATCCTGGGGACAGAGGGCCTGACCATGAGTACGTGCTGGTCGAGGAAGCGGAGTGTGCCATGAGCGAGAGGGAGGCTGCCCCAAATGAGGAA|GTATTTTATGCATGGTGTGTGTCGGGAAGGAAGTCAGTGCCTATTCTCACATGACTTGGCAAACAGCAAACCGTCCACCATCTGCAAGTACTACCAGAAGGGCTACTGTGCCTATGGAACTCGGTGCAGATATGACCACACGAGGCCCTCTGCTGCAGCTGGAGGTGCTGTGGGCACCATGGCCCACAGTGT 8 1.0 0.769821648196428 0.7163674610405479 Y Y 3.23168330567983 3.3880502598123803 3.23168330567983 0 0.0 0.0 Y 0.0 N Y 379 2047 ENSG00000154743 ENSG00000075975 + - 3 3 12581122 12625212 coding coding TSEN2 MKRN2 12525931 12598513 + + 0.0 12545283 12610374 + - N - - N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 13 1.327994277287 1.26969208950367 1.327994277287 1.26969208950367 4 - - 0.9942315411823952 HCT116-unstranded 10.0 1100217 CCAGCTCGAGTAGTAGTTGTGGACTGCAAGAAGGAAGCCTTCCGCCTGCAGCCCTATAACGGCGTTGCCCTGCGGCCCTGGGACGGCAACTCTGATGACCGGGTCTTGTTGGATCTGTCTGCCTTCCTCAAGA|ACACGGCCCGCTGGCGTCTTCGAGCTGCAGATCCACTCTTTCGGGCCGGGTCCAGGCCCTGGGGCCCCGCGGTCCCCCTGCAGCGCCCGGCTCCCCTGCCGCCTCTTCTTCAGAGTCTGCCTGAAGCCTGGGCTCTCAGAGGAGGCCGCCGAGTCCCCGTGCGCCCTGGGCGCGGCGCTGAGTGCGCGCGGACCGGTCTAC 3 0.252764785832797 0.7511143869034029 0.9667437108455228 Y Y 3.58337693299909 3.59272380419397 3.58337693299909 1 0.0 0.0 Y 0.0 N Y 6460 776 ENSG00000105197 ENSG00000090932 + - 19 19 39981528 39999118 coding coding TIMM50 DLL3 39971052 39989557 + + 0.0 39978857 39989832 + - N - - N SA470 1 0.0 1.0 1 0 6 N Y 0.0 0.0 7 1.28912615209811 1.07535146355923 1.28912615209811 1.07535146355923 4 - - 0.990466625190776 HCT116-unstranded 10.0 1100215 TTGGCTCCCTCACCAGCCGCTTGTGGCCTCGCTCCAAACAGCCCTGAACTCTGGGCCTCCTCAAACTCAGTGCCTGGGTCCAGGGCCCCAGTGCTTCCAGACCAAGACTTGGGCCACCACTTGTCCAATAAAGTACATCCCAGACGCCACACCTGCTGTGTCCCGAGAGTCTCCAGATGGGGGCATCAGG|ACACGGCCCGCTGGCGTCTTCGAGCTGCAGATCCACTCTTTCGGGCCGGGTCCAGGCCCTGGGGCCCCGCGGTCCCCCTGCAGCGCCCGGCTCCCCTGCCGCCTCTTCTTCAGAGTCTGCCTGAAGCCTGGGCTCTCAGAGGAGGCCGCCGAGTCCC 9 1.0 0.5844872518056329 0.0984157692982639 Y Y 3.42936294528359 3.59272380419397 3.42936294528359 0 0.0 0.0 Y 0.0 N N 6460 776 ENSG00000105197 ENSG00000090932 + - 19 19 39981528 39999118 utr3p coding TIMM50 DLL3 39971052 39989557 + + 0.0 39980603 39989832 + - N - - N SA470 1 0.0 1.0 1 0 6 N Y 0.0 0.0 13 1.12069760961293 0.913400941938865 1.12069760961293 0.913400941938865 4 - - 0.989027350018282 HCT116-unstranded 10.0 733781 CGGAGGTCCGGCCGGGCGCGCGCGCCCCCGCCACACGCACGCCGGGCGTGCCAGTTTATAAAGGGAGAGAGCAAGCAGCGAGTCTTGAAGCTCTGTTTGGTGCTTTGGATCCATTTCCATCGGTCCTTACAGCCGCTCGTCAGACTCCAGCAGCCAAGATGGTGAAGCAGATCGAGAGCAAG|GTCCTGCCCCACCCAGCTGTGTTTGCTTTTCTCCCGGATCCGGATGGAGGGGTTGCCCTGCCCGTGCCCAGCCCTGCCCCACTTCTGGCAGCTTAGGTCTCACTTAATGGCTGAGGGCTCCAGGACTCAGGCCCCTGGGAAAGGGCCCCCACTCAGCATCCAGTTCCTGCGAGCCCAGTATGAAGGC 9 0.7844609965140592 0.410611593267442 0.030307423217365 Y Y 3.44247137319745 3.2776762169330604 3.2776762169330604 0 0.0 0.0 Y 0.0 N N 29228 4428 ENSG00000136810 ENSG00000188959 + - 9 9 113018920 112970469 coding utr5p TXN C9orf152 113006091 112952328 - - 0.0 113018692 112969902 - + N - 31.9954288338414 N SA470 1 0.19047619047619 1.0 1 0 1 N Y 0.19047619047619 0.0 12 1.08830750528886 1.13365365134256 1.13365365134256 1.08830750528886 4 - 0.5 0.9679438434903148 HCT116-unstranded 10.0 728055 TCAGACTCCAGCAGCCAAGATGGTGAAGCAGATCGAGAGCAAGACTGCTTTTCAGGAAGCCTTGGACGCTGCAGGTGATAAACTTGTAGTAGTTGACTTCTCAGCCACGTGGTGTGGGCCTTGCAAAATGATCAAGCCTTTCTTTCATGATGTTGCTTCAGAGTGTGAAGTCAAATGCATGCCAACATTCCAGTTTTTTAAGAAGGGACAAAAGG|AGGAAACACACCTGCTCCTGCAGAATCGATGGTCAATGCTGTTTGGATTAACAAGGAGAGAAGAAGCTCACTGTCCCTGGAAGAGGCAGATTCTGAGGTGGAGGGGAGGCTGGAGGAGGCTGCCCAGGGCTGCCTTCAGGCCCCCAAGTCTCCATGGCACACGCACCTGGAGATGCATTGTTTGGTCCAAACCTCCCCCCAGGACACCAG 47 0.7358046826275749 0.8996541470244449 0.588088165519214 Y Y 3.3787127361873104 3.6491271616355 3.3787127361873104 1 0.0 0.0 Y 0.00709814442208812 N Y 29228 4428 ENSG00000136810 ENSG00000188959 + - 9 9 113018920 112970469 coding coding TXN C9orf152 113006091 112952328 - - 0.0 113007058 112963754 - + N - - N SA470 3 0.0 1.58823529411765 1 8 2 N Y 0.0 0.0 17 1.39277448593515 1.26969208950367 1.39277448593515 1.26969208950367 4 - - 0.9651484637986422 HCT116-unstranded 10.0 733546 GCTTGCCCCTATGATGTACTTGATGACTGGTGTCCTGGGGGGAGGTTTGGACCAAACAATGCATCTCCAGGTGCGTGTGCCATGGAGACTTGGGGGCCTGAAGGCAGCCCTGGGCAGCCTCCTCCAGCCTCCCCTCCACCTCAGAATCTGCCTCTTCCAGGGACAGTGAGCTTCTTCTCTCCTTGTTAATCCAAACAGCATTGACCATCGATTCTGCAGGAGCAGGTGTGTTTCCTCCTT|GCTCTCGATCTGCTTCACCATCTTGGCTGCTGGAGTCTGACGAGCGGCTGTAAGGACCGATGGAAATGGATCCAAAGCACCAAACAGAGCTTCAAGACTCGCTGCTTGCTCTCTCCCTTTATAAACTGGCACGCCCGGCGTGCGTGTGGCGGGGGCGCGCGCGCCCGGCCGGACCTCCGCGCCCGTCGCTGCGCCCCGGCCACG 175 1.0 0.597688422998784 0.189939326872253 Y Y 3.6491271616355 3.44247137319745 3.44247137319745 0 0.0 0.0 Y 0.0 N Y 4428 29228 ENSG00000188959 ENSG00000136810 - + 9 9 112970469 113018920 coding coding C9orf152 TXN 112952328 113006091 - - 0.0 112963754 113018692 + - N - 0.604316535945947 N SA470 1 0.272727272727273 1.0 1 0 2 N Y 0.0 0.272727272727273 219 1.56120302842033 1.35390636074626 1.56120302842033 1.35390636074626 4 - 87.013698630137 0.98660755015233 HCT116-unstranded 10.0 728811 GTTTGGTGCTTTGGATCCATTTCCATCGGTCCTTACAGCCGCTCGTCAGACTCCAGCAGCCAAGATGGTGAAGCAGATCGAGAGCA|AGGAGGAAACACACCTGCTCCTGCAGAATCGATGGTCAATGCTGTTTGGATTAACAAGGAGAGAAGAAGCTCACTGTCCCTGGAAGAGGCAGATTCTGAGGTGGAGGGGAGGCTGGAGGAGGCTGCCCAGGGCTGCCTTCAGGCCCCCAAGTCTCCATGGCACACGCACCTGGAGATGCATTGTTTGGTCCAAACCTCCCCCCAGGACACCAGTCATCAAGTACATC 151 0.0018726141595966801 0.9557541805325692 0.290862967586577 Y Y 3.4131060647942 3.6616970333194314 3.4131060647942 0 0.0 0.0 Y 0.0 N Y 29228 4428 ENSG00000136810 ENSG00000188959 + - 9 9 113018920 112970469 coding coding TXN C9orf152 113006091 112952328 - - 0.0 113018692 112963754 - + N - - N SA470 2 0.0 1.07692307692308 1 1 2 N Y 0.0 0.0 13 0.926356983668494 1.1077415678833 1.1077415678833 0.926356983668494 4 - - 0.985077794568294 HCT116-unstranded 10.0 109130 GGCTGTCCATCGGGCTGGCCTATGGCCTCACCTACTGCTATTCCATCGACCTCTCAGAGCGAGTGGCACTGAAGCTCGATCAGACCTTCCCCTTCAGCCTGATGAGGAGGATATCCGTGTTCAAGTACGTCTCAGGGTCTTCAGCCGAGAGGAGGGCAGCCCAGAGCCGGAA|TTTCATGATCAACATGGGAGACTCCCACGTGGACACCAGCTCCACCGTGTCCGAGGCGGTGGCCGAAGAAGTATCTCTTTTCAGCATGACGGACATGATTCTGTTTTCGCTCATCGTGGGTCTCCTAACCTACTGGTTCCTCTTCAGAAAGAAAAAAGAAGAAGTCCCCGAG 6 0.8178284735376049 0.6206934421561651 0.7244099462130359 Y Y 3.1258962026266803 3.45872825368684 3.1258962026266803 1 0.0 0.0 Y 0.0 N Y 11141 8061 ENSG00000005486 ENSG00000127948 + - 7 7 75518244 75616173 coding utr5p RHBDD2 POR 75471920 75528518 + + 0.0 75513166 75583307 + - N - - N SA470 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 8 1.07535146355923 1.04296135923516 1.07535146355923 1.04296135923516 4 - - 0.980367620960345 HCT116-unstranded 10.0 968136 GAAAAAGGTCCTTGACGCAAGGGGCTCAAATAGTTTACCTCTGCTGAGATCTGTCTTGGACAAATTAAGTGCTAATCAACAAAATATTCTGAAATTCATTGCTTGCAATGAAATATTCCTGATGCCTGCGACAGTTTTTATGCTTTTTAG|AATAGAGAGGATAAAAAGTAGCAACACTTCCGCTTGCACCCGGACGGAACTTCCTGTCACGGAAAAGAACATCCTGTCACGGAGAAGAACATCCTGCAGAATTTCCTGTCACGAGGAACATTCCGCAGGAGGAAATGGAGGCTGAAAGGCTGCGACTCCTCGAGGAAGAGGCCAAGCTGAAAAAGG 42 0.0719312391416788 0.7553834857414371 0.805742467173263 Y Y 3.3802403194971604 3.69681549006792 3.3802403194971604 0 0.0 0.0 Y 0.0 N N 4661 10957 ENSG00000109133 ENSG00000182308 + - 4 4 41962589 41988476 coding upstream TMEM33 DCAF4L1 41937137 41983713 + + 0.0 41946943 41983676 + - N - - N SA470 1 0.037037037037037 1.0 1 0 8 Y Y 0.0 0.037037037037037 29 1.15956573480182 1.22434594344997 1.22434594344997 1.15956573480182 4 - - 0.987994885374266 HCT116-unstranded 10.0 968138 GAGCGAGACCCTTCCCTGGTGGAGGCTCAGAGTTCCGGCAGGGTGCATCCGGCCTGTGTGTGGCGCGAGGCAGGGAAGCCGGTACCCGGGTCCTGGCCCCAGCGCTGACGTTTTCTCTCCCCTTTCTTCTCTCTTCGCGGTTGCGGCGTCGCAGACGCTAGTGTGAGCCCCCATGGCAGATACGACCCCGAACGGCCCCCAAGGGGCGGGCGCTGTG|AATAGAGAGGATAAAAAGTAGCAACACTTCCGCTTGCACCCGGACGGAACTTCCTGTCACGGAAAAGAACATCCTGTCACGGAGAAGAACATCCTGCAGAATTTCCTGTCACGAGGAACATTCCGCAGGAGGAAATGGAGGCTGAAAGGCTGC 16 0.668656002119254 0.925298936648212 0.6460101957160961 Y Y 3.29703230673212 3.69681549006792 3.29703230673212 0 0.0 0.0157320789951201 Y 0.0157320789951201 N N 4661 10957 ENSG00000109133 ENSG00000182308 + - 4 4 41962589 41988476 coding upstream TMEM33 DCAF4L1 41937137 41983713 + + 0.0 41937546 41983676 + - N - - N SA470 1 0.0448717948717949 1.0 1 0 8 N Y 0.0 0.0448717948717949 13 1.42516459025922 1.01057125491108 1.42516459025922 1.01057125491108 4 - - 0.9937791697056568 HCT116-unstranded 10.0 382550 GGTGGCCATCACTGAGCAGGATTTGGAACTTATTAAAGAAAGAGAAACGGCAATTCGGCAGCTGGAGGCTGACATTTTGGATGTCAATCAGATATTTAAAGATTTGGCCATGATGATCCATGACCAGGGTGATCTGATTGATAGCATAGAAGCCAATGTGGAAAGCTCAGAGGTGCACGTCGAAAGAGCCACTGAACAGTTACAGCGAGCTGCTTACTATCAG|GGCAGGTAAGCCCCCTCCCGGTTTACATCTGGATGTAGTCAAAGGAGACAAACTAATTGAGAAACTGATTATTGATGAGAAGAAGTATTACTTATTTGGGAGAAACCCTGATTTGTGTGACTTTACCATTGA 7 0.949522212840024 0.905267174886397 0.293666744355849 N Y 3.66951632120446 3.588962247475 3.588962247475 0 0.0 0.0 Y 0.0 N Y 472 2019 ENSG00000117758 ENSG00000117751 + - 1 1 28150963 28178187 coding coding STX12 PPP1R8 28099694 28157289 + + 0.0 28146243 28159267 + - N - - N SA470 2 0.0 1.2 1 1 1 N N 0.0 0.0 5 1.06887344269442 0.7579284411833129 1.06887344269442 0.7579284411833129 4 - - 0.918933234701442 HCT116-unstranded 10.0 1036663 TCTCCTCCTGTAAACAGGGCCTTAACGCCAGCTGCTACTCTAAGTGCTGTTCAGAATTTAGTGGTTGAAGGACTGCGATGTGTAGTTTTGCCAGAAGATCTTTGCCACAAATTTCTGCAACTGGCAGAATCTAATACAGTGAGAGGAATAGAAACCTGTGGAATACTCTGTGGAAAACTG|GTTCTTACGTCTGTTGCTAGATTATCGTCCAAAAGTGTTAATGCCCAAGTGACTGACATCAACTCCAAGGGATTGGAATTGAGGAAGACTGTTACTACAGTTGAGACTCAGAACTTGGAAGGCCTGCATCATGATGGCCAATTCTGCCATAAGCCCTGTCCTCCA 16 1.0 0.8512564792220129 0.441506281682389 Y Y 3.2965682984157003 3.59528445727371 3.2965682984157003 0 0.0 0.0 Y 0.0 N Y 736 2823 ENSG00000138134 ENSG00000026103 + - 10 10 90734910 90775542 coding coding STAMBPL1 FAS 90639491 90750414 + + 0.0 90674415 90762786 + - N - - N SA470 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 14 1.07535146355923 1.08830750528886 1.08830750528886 1.07535146355923 4 - - 0.994848257334812 HCT116-unstranded CGHSA0014 10.0 1036703 TTGCACTTGGTGTTGCTGGTGAGTGTGCATTCCTTGATGATTCCATGTTCACATCTGGAGGACAGGGCTTATGGCAGAATTGGCCATCATGATGCAGGCCTTCCAAGTTCTGAGTCTCAACTGTAGTAACAGTCTTCCTCAATTCCAATCCCTTGGAGTTGATGTCAGTCACTTGGGCATTAACACTTTTGGACGATAATCTAGCAACAGACGTAAGAAC|TAGCAACCCTTGGTGTCCGCAGCCCGTGTGGGACGGCGACTGCGACGGCTGCCCCCGTGGCTGCCGTGTGGCCTTGGCATCCGTCCGGCTGCTGCAACCCGGGCCGCGGTGGCTTTTGCTGGAAGGCGTTGCAGCGGGGTGATACCGGCACCCGGCGACGAGGCGTCCGCTCGTTTGCCTCGGCCGTGCCTCCTCCCCCTTCTCCTCTGCCGACAGATGGAGCTTT 55 0.8910708239243791 0.676614913735919 0.30632824002916903 Y Y 3.59528445727371 3.53871326596283 3.53871326596283 0 0.0 0.0 Y 0.0 N Y 2823 736 ENSG00000026103 ENSG00000138134 - + 10 10 90775542 90734910 coding utr5p FAS STAMBPL1 90750414 90639491 + + 0.0 90762786 90640395 - + N - 3.7406083534154 N SA470 1 0.0 1.0 1 0 2 N Y 0.0 0.0 92 1.45107667371848 1.48994479890737 1.48994479890737 1.45107667371848 4 - 1.10869565217391 0.98660755015233 HCT116-unstranded CGHSA0014 10.0 941877 GCAGCCTACACACCCAATTCGTCTTGGTCTGGCACTAAATTTCTCAGTCTTTTACTATGAGATTCTAAACTCTCCTGAAAAGGCCTGTAGCCTGGCAAAAACGGCATTTGATGAAGCAATTGCTGAATTGGATACGCTGAATGAAGAGTCTTATAAAGACAGCACTCTGATCATGCAGTTACTTAGGGACAATCTCACTC|GGAGCGGGCACTGGACACAATGAACTTTGAGATGCTCAAAGGCCAGCCTATTCGCATCATGTGGTCCCAGCGAGACCCAGGACTTCGCAAGTCAGGTGTGGGCAACATCTTCATCAAGAACCTGGAGGACTCCATTGACAACAAGGCTTTATATGATACCTTCT 10 1.0 0.73600204179804 0.4133288263706521 Y Y 3.5514509715161 3.3755202409218 3.3755202409218 3 0.0 0.0 Y 0.00273972602739725 N Y 51213 1274 ENSG00000166913 ENSG00000101104 + - 20 20 43537173 43587676 coding coding YWHAB PABPC1L 43514317 43538703 + + 0.0 43534737 43541301 + - N - - N SA470 2 0.0 1.5 1 4 2 N Y 0.0 0.0 8 1.25673604777404 0.932835004533309 1.25673604777404 0.932835004533309 4 - - 0.94392741046324 HCT116-unstranded 10.0 941702 GGAATGAGAAGAAGCAGCAGATGGGCAAAGAGTACCGTGAGAAGATAGAGGCAGAACTGCAGGACATCTGCAATGATGTTCTGGAGCTGTTGGACAAATATCTTATTCCCAATGCTACACAACCAGAAAGTAAGGTGTTCTACTTGAAAATGAAAGGAGATTATTTTAGGTATCTTTCTGAAGTGGCATCTGGAGACAACAAACAAA|CGGAGCGGGCACTGGACACAATGAACTTTGAGATGCTCAAAGGCCAGCCTATTCGCATCATGTGGTCCCAGCGAGACCCAGGACTTCGCAAGTCAGGTGTGGGCAACATCTTCATCAAGAACCTGGAGGACTCCATTGACAACAAGGCTTTATATGATACCTTCTCCACCTTTGGGAACATCCTCTCTTGCAAGGTG 14 0.976470045168982 0.773263134610293 0.294442434940801 Y Y 3.51257095804863 3.45976132345673 3.45976132345673 0 0.0 0.0 Y 0.0024691358024692103 N Y 51213 1274 ENSG00000166913 ENSG00000101104 + - 20 20 43537173 43587676 coding coding YWHAB PABPC1L 43514317 43538703 + + 0.0 43532757 43541301 + - N - - N SA470 2 0.0 1.23076923076923 1 3 2 Y Y 0.0 0.0 13 1.3215162564221898 1.27617011036848 1.3215162564221898 1.27617011036848 4 - - 0.9683893812906008 HCT116-unstranded 10.0 1101905 GCTTTTTATAGCGGCCGCGGGCGGCGGCGGCAGCGGTTGGAGGTTGTAGGACCGGCGAGGAATAGGAATCATGGCGGCTGCGCTGTTCGTGCTGCTGGGATTCGCGCTGCTGGGCACCCACGGAGCCTCCGGGGCT|GGTTCTACTGGGACTTCACCATGCTGCTGTTCATGGTGGGAAACCTCATCATCATCCCAGTGGGCATCACCTTCTTCAAGGATGAGACCACTGCCCCGTGGATCGTGTTCAACGTGGTCTCGGACACCTTCTTCCTCATGGACCTGGTGTTGAACTTCCGCACCGGCATTGTGATCGAGGACAACACGGAGATCATCCTGGACCCCGAGAAGATCAAGAAGAAGT 5 0.7595684582305379 0.993513967462518 0.677592896045438 Y Y 3.25935319690388 3.40169305405954 3.25935319690388 0 0.0 0.0 Y 0.0 N Y 103637 2092 ENSG00000172270 ENSG00000099822 + - 19 19 583493 617159 coding intron BSG HCN2 571297 589893 + + 0.0 572701 603544 + - N - 0.119296894019645 N SA470 3 0.16030534351145 2.6666666666666696 1 14 3 N Y 0.16030534351145 0.0 15 0.8486207332907181 1.25673604777404 1.25673604777404 0.8486207332907181 4 - 7.26666666666667 0.941950958874028 HCT116-unstranded 10.0 375534 CAGACGGCGGCAGTGCGGCTTGCTCTTGGAAGTTCAGGCTCGGTTGTCTTTTGGGAGCCATGGAGAGTGACTTTTATCTGCGTTACTACGTGGGGCACAAGGGCAAGTTCGGCCACGAGTTCCTGGAGTTTGAGTTTCGACCGGACGGGAAGTTAAGATATGCCAACAACAGCAATTACAAGAATGATGTCATGATCAGAAAAG|AGGCTGGGTTTGCTGCTGAAGGTGTGGAGTCAGGGACAGCCTTCAGTGACATTAATCTGCAGGAGAAGGACTGGACTGACTATGATGAAAAGGCCCAGGAGTCTGTGGGAATCTATGAGGTCACCCACCAGTTTGTGAAGTGCTGATCCCTCTTCCTTCCCAGTTGCCCTTAAGAACTGAGAAAGGACAAAGTACTCTAAGCAGCAGAGCCCACAGAGGCTCGTTCCTTT 63 0.0005242415692658268 0.9672523323533572 0.7381356592738441 N Y 3.2452463943403 3.1804012543977795 3.1804012543977795 6 0.995109308091052 0.0 Y 0.0 N Y 2683 2050 ENSG00000162385 ENSG00000162384 + - 1 1 53704282 53686289 coding coding MAGOH C1orf123 53692564 53679771 - - 0.0 53701249 53681728 - + N - - N SA470 2 0.0 1.125 1 1 2 Y N 0.0 0.0 8 0.7644064620481279 1.00409323404627 1.00409323404627 0.7644064620481279 4 - - 0.978800204360282 HCT116-unstranded CGHSA0332 10.0 375535 CGGGCGCAGACGGCGGCAGTGCGGCTTGCTCTTGGAAGTTCAGGCTCGGTTGTCTTTTGGGAGCCATGGAGAGTGACTTTTATCTGCGTTACTACGTGGGGCACAAGGGCAAGTTCGGCCACGAGTTCCTGGAGTTTGAGTTTCGACCGGACGGGAAGTTAAGATATGCCAACAACAGCAATTACAAGAATGATGTCATGATCAGAAAAG|AGGCTGGGTTTGCTGCTGAAGGTGTGGAGTCAGGGACAGCCTTCAGTGACATTAATCTGCAGGAGAAGGACTGGACTGACTATGATGAAAAGGCCCAGGAGTCTGTGGGAATCTATGAGGTCACCCACCAGTTTGTGAAGTGCTGATCCCTCTTCCTTCCCAGTTGCCCTTAAGAACTGAGAAAGGACAAAGTACTCTAAGCAGCAGAGCCCACA 63 0.7270288128590591 0.9672523323533572 0.7381356592738441 N Y 3.2452463943403 3.1804012543977795 3.1804012543977795 0 0.9952492734182872 0.0 Y 0.0 N Y 2683 2050 ENSG00000162385 ENSG00000162384 + - 1 1 53704282 53686289 coding coding MAGOH C1orf123 53692564 53679771 - - 0.0 53701249 53681728 - + N - - N SA470 2 0.0 1.11764705882353 1 4 2 Y N 0.0 0.0 34 1.40573052766478 1.3150382355573702 1.40573052766478 1.3150382355573702 4 - - 0.9916302266904028 HCT116-unstranded CGHSA0332 10.0 860563 TGAGGAGAGCATGATGGTGCGTTTGAGCGTCAGTAAGCGAGAGAAAGGACGGCGAAAACGAGCAAATGTCATGAGCTCACAACTTCATTCCCTTACACACTTCAGTGACATCAGTGCTTTGACAGGGGGAACTGTTCATCTTGATGAGGATCAGAATCCTATTAAGAAGCGGAAGAAGATACCTCAGAAAGGTCGGAAGAAAAA|AGCCAATTGCAGGTAGCATGGCCCAGGGCTTGATTGAGGTGGAGCGAAAGTTCCTTCCAGGGCCTGGCACAGAGGAGCGGCTGCAGGAGTTGGGGGGCACCCTGGAGTACCGGGTCACCTTCCGAGACACCTACTATGACACCCCTGAGCTGAGCCTCATGCAGGCTGACCACTGGCTGCGACGACGAGAGGATAGTGGATGGGAGCTCAAATGTCCTGG 14 0.634381016885422 0.943978200932755 0.720892165413175 Y Y 3.1426958721453304 3.40591861909494 3.1426958721453304 0 0.0 0.0 Y 0.0 N Y 2997 1615 ENSG00000129460 ENSG00000259431 + - 14 14 23979071 24029480 coding utr5p NGDN THTPA 23938897 24025216 + + 0.0 23946769 24025952 + - N - - N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 18 1.33447229815182 1.36038438161107 1.36038438161107 1.33447229815182 4 - - 0.979687197514126 HCT116-unstranded 10.0 2067 ATAGCAGTGAAGATGAAGTCTTTCCAGACTCTCCTGGGGCTTATGAAGCTGAGTCACCATCCCCACCTCCTCCTCCGTCTCCACCTCTTGAACCAGTGCCAAAGACTGAGCCTGAACCTCCTTCTGTCAAGA|CTTTATATTCAGAGCACCAATCAAATTAAGCAAGCCTGGGGAACTTCGTGAGGAATATGAAAGCTTGAGAAAGCTGAGAGAAGAAAAGTTACAAGAGGAAAAACCCTCTGAAGATCAAATCCACAAGCTGTTACCAGAGGATACAGAAACAGGGAAAAGGAAAATGGATGAA 4 0.4273620180614179 0.36766498278924 0.0325049133814376 N Y 3.41952156054875 3.44615838200292 3.41952156054875 0 0.0 0.0 Y 0.0 N Y 572 3857 ENSG00000077514 ENSG00000166439 + - 11 11 74380162 74553458 coding coding POLD3 RNF169 74204896 74459913 + + 0.0 74345740 74500671 + - N - - N SA470 1 0.0 1.0 1 0 3 N N 0.0 0.0 5 0.647802086481464 0.453461460537025 0.647802086481464 0.453461460537025 4 - - 0.988542087031788 HCT116-unstranded 10.0 1604 CAGACCCCCTGCCATGACTGTGAAAAAAGAACCCAGAGAGGAACGAAAGGGCCCCAAGAAAGGGACTGCTGCTCTGGGCAAAGCCAACAGACAGGTGTCCATTACTGGCTTCTTCCAGAGGAAATAAACTGCCATCTCTGGTAGATCAGAGACTTGGAGTGGTCAAGGGAGAAGACCAAGAAATGTACTCCTCACTTACTAT|CTGAGAGAAGAAAAGTTACAAGAGGAAAAACCCTCTGAAGATCAAATCCACAAGCTGTTACCAGAGGATACAGAAACAGG 3 0.0327161064848511 0.971886199170381 0.9899445879065932 N Y 3.5203902459336605 3.00717273832835 3.00717273832835 0 0.0 0.0 Y 0.0 N N 572 3857 ENSG00000077514 ENSG00000166439 + - 11 11 74380162 74553458 utr3p coding POLD3 RNF169 74204896 74459913 + + 0.0 74351886 74521229 + - N - - N SA470 1 0.0 1.0 1 0 3 Y N 0.0 0.0 6 1.04296135923516 0.8486207332907181 1.04296135923516 0.8486207332907181 4 - - 0.9778011514667808 HCT116-unstranded 10.0 615285 ACCTGATCCGCCTCTTCCAGGAGTGGGAGGCTCATCGGAACCTGTCCCAGCTCCCTAATTTTGCCTTCTCTGTTCCACTGGCGTATTTCCTGCTGAGCCAGCAGACAGACCTCCCTGAGTGTGAGCAGAGCTCTGCCAGGCAGAAGGCCTCTCTCCTGATACAGCAGGCGCTCACCATGTTCCCTGGAG|ATGCCTTGAGTCCACCCAAATAGGGGATGTGATGTTTGGAGCTGCAGCAGCCGCCCTACGGTTGGGAGTCAGAGAAGAGCCGGTGTTCCAGGGACAATGCAGCAGAGGCTGAGCCCAGGCCTGCTGTCCTGAGAGGTGGCTGGATCACTGACACTTTGGCAGTGGTGCTGGGGTTTATGTCATGACCTGCAGCTGAGCCTACTTCCAAT 12 0.890151780565116 0.54715223245193 0.41198454302196297 Y Y 3.65657572715995 3.41576000382978 3.41576000382978 0 0.994722255373884 0.0 Y 0.0 N Y 20799 4975 ENSG00000141002 ENSG00000258839 + - 16 16 89977792 89987385 coding intron TCF25 MC1R 89940000 89978527 + + 0.0 89967202 89979640 + - N - - N SA470 1 0.0 1.0 1 0 4 N Y 0.0 0.0 14 1.15308771393701 1.34095031901663 1.34095031901663 1.15308771393701 4 - - 0.989006818533532 HCT116-unstranded 10.0 612091 ACCTGGCCCTCTACAAGCAGATGAGCTTCCTGGAGAAGCGAGGCTGCCCGCGCACGGCGCTGGAGTACTGCAAGCTCATCCTGAGTCTCGAGCCGGATGAGGACCCCCTCTGCATGCTGCTGCTCATCGACCACCTGGCCTTGCGGGCCCGGAACTACGAGTACCTGATCCGCCTCTTCCAGGAGTGGGAG|ATGCCTTGAGTCCACCCAAATAGGGGATGTGATGTTTGGAGCTGCAGCAGCCGCCCTACGGTTGGGAGTCAGAGAAGAGCCGGTGTTCCAGGGACAATGCAGCAGAGGCTGAGCCCAGGCCTGCTGTCCTGAGAGGTGGCTGGATCACTGACACTTTGGCAGTGGTGCTGGGGTTTATGTCATGACCTGCAGCT 4 0.6417597863218629 0.478208782666629 0.389436451314221 Y Y 3.73656073943594 3.41576000382978 3.41576000382978 0 0.9947779616417548 0.0 Y 0.0 N Y 20799 4975 ENSG00000141002 ENSG00000258839 + - 16 16 89977792 89987385 coding intron TCF25 MC1R 89940000 89978527 + + 0.0 89965280 89979640 + - N - - N SA470 1 0.0 1.0 1 0 4 N Y 0.0 0.0 6 1.15956573480182 1.07535146355923 1.15956573480182 1.07535146355923 4 - - 0.986741672946898 HCT116-unstranded 10.0 615833 TGTGTTATCTGGAAAGGCTGGATTGATCTCCAAAGACTGGATGGTATGGGCTGTCTGGAGTTTGATGAGGAGCGAGCCCAG|GAATGCCTCTGGCTCAGGCAGTAGCCATTCTTCAGAAGCACTGTCGCATCATCAAAAACGTCCAGGTTCTCTACAGTGAACAGTCTCCTCTAAGCCATGACCTCATTCTTAACCTGACTCAGGACGGGATCAAACTAATG 6 3.27792873323471e-05 0.288950781649343 0.511887751367701 Y Y 3.33424740824393 3.62312218236711 3.33424740824393 0 0.0 0.0 Y 0.0 N Y 5820 4776 ENSG00000067955 ENSG00000125149 + - 16 16 67134961 67182442 coding coding CBFB C16orf70 67063019 67143861 + + 0.0 67100701 67154015 + - N - - N SA470 1 0.0 1.0 1 0 3 N Y 0.0 0.0 9 1.06887344269442 0.9781811505870108 1.06887344269442 0.9781811505870108 4 - - 0.975442138908266 HCT116-unstranded 10.0 615254 GCGGCCGGCCGGCGCGGCCTCAGGGCGGGAAGATGCCGCGCGTCGTGCCCGACCAGAGAAGCAAGTTCGAGAACGAGGAGTTTTTTAGGAAGCTGAGCCGCGAGTGTGAGATTAAGTACACGGGCTTCAGGGACCGGCCCCACGAGGAACGCCAGGCACGCTTCCAGAACGCCTGCCGCGACGGCCGCTCGGAAATC|CCCAATTTTGCCCATGGCCTGGCTTCTCTCCAGATACCCCATGGAGCAACTGTAAAACGAATGTACATCTACAGTGGCAACAGCCTGCAGGATACCAAGGCTCCCATGATGCCTCTGAGCTGTTTCCTGGGCAATGTCTATGCTGAGAGTGTAGATGTTCTTCGAGATGGAAC 4 1.0 0.6318097683170321 0.31513268864404903 Y Y 3.4529352525482406 3.35769173443259 3.35769173443259 0 0.0 0.0 Y 0.0026954177897574602 N Y 5820 4776 ENSG00000067955 ENSG00000125149 + - 16 16 67134961 67182442 coding coding CBFB C16orf70 67063019 67143861 + + 0.0 67063716 67168071 + - N - - N SA470 1 0.104395604395604 1.0 1 0 3 Y Y 0.104395604395604 0.0 10 1.17899979739626 1.10126354701849 1.17899979739626 1.10126354701849 4 - - 0.98660755015233 HCT116-unstranded 10.0 655960 CTGATCGATCACCAGAACCTACAAGGGAACAATTAGATAGTGGTCGAATAGGAGCAGATGAAGAAATTGATGATTTCAAAGGAAGATCAGCTGAGGAAGTAGAAGAAATAAAGGCAGAAAAAGAGGCTAAAACTCAGGCTATACTTTTGGAGATG|CTGAACGTGACTGTGGCGTGCAGGAAGTGGAGCATTGGCATGAAGTGGCTCCTAGTGGCTGCTTGGCGCACGCCAGCTGCCCTCCTCTGACTCCAGTGGCACCTGGGGGCCTGGCCTCACTGACGGGAGAACATTGGCGTGAAGGCTGCTGGCGA 4 0.292207677664201 0.969419844065634 0.941138451062146 N Y 3.329991337985 3.51203659171532 3.329991337985 0 0.9935691318327968 0.0 Y 0.0 N Y 922 630 ENSG00000131013 ENSG00000178199 + - 6 6 149867174 149806197 coding utr5p PPIL4 ZC3H12D 149825869 149768794 - - 0.0 149854594 149806148 - + N - - N SA470 1 0.0 1.0 1 0 1 N N 0.0 0.0 6 0.667236149075908 0.6737141699407231 0.6737141699407231 0.667236149075908 4 - - 0.977837060564704 HCT116-unstranded 10.0 670932 TTCCAGCAGTAGGAGAACCTAATATTCAACAGTATGCACAAAACATGGGCCTGCCCCAGAACCGTATCATTTTTTCACCTGTTGCTCCTAAAGAGGAACACGTCAGGAGAGGCCAGCTGGCTGATGTCTGCTTGGACACTCCACTCTGTAATGGGCACACCACAGGGATGGATGTCCTCTGGGCAGGGACCCCCATGGTGACTATGCCAG|ATGAGAGTCCGGAGTGTTGTCATGTGAAGCCTGCCATCCAGGAACCTCCAATAGTTATTAGTGATGATGACAATGACGATGACAACGGTAATGATTTGGAAGTTCCCGACGACAACAGTGATGATTCAGAAGCTCCCGACGACAACAGTGATGATTCGGAAGCTCCTGACGACAACAGTGATGATTCGGAAGCTCCCGACGACAACA 49 1.0 0.9388496776055648 0.6052322400963841 Y Y 3.37448717115191 3.55760534744548 3.37448717115191 0 0.0 0.0 Y 0.0216697871160112 N Y 5412 1608 ENSG00000147162 ENSG00000147174 + - X X 70795747 70833433 coding coding OGT ACRC 70752933 70798261 + + 0.0 70787602 70823438 + - N - 0.0523711972362597 N SA470 2 0.0 1.1521739130434798 1 7 1 Y Y 0.0 0.0 46 1.39277448593515 1.36686240247589 1.39277448593515 1.36686240247589 4 - 0.608695652173913 0.972631174669374 HCT116-unstranded 10.0 793020 GAAGATGATTTAAATTCATTCAATGCCACAGACCTGAAGGATCTCTCTTCTCATCAATTGAATGAGTTTTTAGCACAGACGCTCCAGAGGATGGCTGCGGCTCTGCATTCAATCCAAGTGGGAGGACGCAATTCCTTTGGCGCTAAAGATGGCAACTGAACAAGGAAGAATGAAGTTTACCCGGCCCTTATTCAA|CTGACCACACCCCGGTAGCCACTCCTGCATAAAGCTCTCCCCTCCTGTGACCAGCTGAGGACCTCAGGCTGCAGCGGAGCCATGCCCAGATACACGGTGCACGTACGTGGGGAATGGCTGGCAGTGCCCTGCCAGGACGCGCAGCTCACTGTGGGCTGGCTGGGCCGGGAGGCCGTGAGGCGCTATATCAAGAATAAGCCCG 16 0.612504899162021 0.6937391293445521 0.6509730938373679 Y Y 3.62192127872787 3.5110433747387795 3.5110433747387795 0 0.0 0.0 Y 0.00251256281407042 N Y 17158 277 ENSG00000111144 ENSG00000084110 + - 12 12 96437298 96390143 coding utr5p LTA4H HAL 96394606 96366440 - - 0.0 96396738 96389769 - + N - 9.55093640666804 N SA470 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 14 1.27617011036848 1.2632140686388602 1.27617011036848 1.2632140686388602 4 - 0 0.964603760603448 HCT116-unstranded 10.0 222525 CAGCAGCGCCGAGAGCAGCCCCAGTAGCAGCGCCATGGCCGGGTGGAACGCCTACATCGACAACCTCATGGCGGACGGGACCTGTCAGGACGCGGCCATCGTGGGCTACAAGGACTCGCCCTCCGTCTGGGCCGCCGTCCCCGGGAAAACGTTCGTCAACATCAC|GGCTGTCGGCTGGCCTGCTGCGTCAGGCCACCTACACCACTACCCGCCTTGGCATCTATACCGTGCTGTTTGAGCGCCTGACTGGGGCTGATGGTACTCCCCCTGGCTTTCTGCTGAAGGCTGTGATTGGCATGACCGCAGGTGCCACTGGTGCCTTTGTGGGAACACCAGCCGAAGTGGCTCTTATCCGCATGACTGCCGATGGCCGGCTTCCAGCTGACCAGCGCCGTGGCTACAAAAATGTGTTTAAC 21 0.6992729782681629 0.286469341730833 0.108140572653568 Y Y 3.35257042827311 3.41054541171446 3.35257042827311 0 0.9939539277668772 0.0 Y 0.0 N Y 259140 4849 ENSG00000108518 ENSG00000108528 + - 17 17 4852356 4843546 coding coding PFN1 SLC25A11 4848947 4840425 - - 0.0 4851558 4842270 - + N - - N SA470 3 0.0 1.65 1 12 2 N Y 0.0 0.0 20 1.09478552615367 1.43164261112404 1.43164261112404 1.09478552615367 4 - - 0.900021320622851 HCT116-unstranded 10.0 1098834 GGAGCGGCTGCCTGCCAAGGACATACAGACCAATGTCTACATCAAGCACCCAGTGTCCCTGGAGCAATACCTGATGGAGGGCAGCTACAACAAAGTGTTCCTGGCCAAGGGTAACATCCCCGCCGAGAGCTACACCTTCTTCATTGACATCCTGCTCGACACTA|TCAGACAACCTTGGAGTGTACACTGAAGCCAGGCTTGGTTTACAACAAGGTGAATCCCATCTTTCACCACTGGAGCCTGGGTGACTGCAAGTTTGGACTGACGTTTCAGAGCCCTGCAGAGGCTGATGAGTTCCAGAAGAGCCTGCTGGCTGCGCTGGCCGCACTGGGTCGAGGTGAGCAGCCCAGGTGATGTGCA 11 1.0 0.33950212835639904 0.700017774710356 N Y 3.54503547576155 3.70144228268745 3.54503547576155 1 0.993919329775015 0.0 Y 0.0 N Y 22402 183 ENSG00000099341 ENSG00000188766 + - 19 19 38874464 38886881 coding intron PSMD8 SPRED3 38865176 38879061 + + 0.0 38871639 38882586 + - N - 0.0960273466800118 N SA470 2 0.0 1.16666666666667 1 1 3 Y N 0.0 0.0 6 1.06887344269442 1.12069760961293 1.12069760961293 1.06887344269442 4 - 1 0.961471967129677 HCT116-unstranded 10.0 1102536 GCTTGCCGCATCACGCAAGATGGCGGCCGCGGCGGTGAACGGGGCGGCAGGCTTCTCGAGCTCCGGGCCCGCGGCAACCTCGGGCGCTGTTCTGCAGGCCGCGACCGGCATGTACGAGCAACTCAAGGGCGAGTGGAACCGTAAAAGCCCCAATCTTAGCAAGTGCGGGGAAGAGCTGGGTCGACTCAAG|ACAACCTTGGAGTGTACACTGAAGCCAGGCTTGGTTTACAACAAGGTGAATCCCATCTTTCACCACTGGAGCCTGGGTGACTGCAAGTTTGGACTGACGTTTCAGAGCCCTGCAGAGGCTGATGAGTTCCAGAAGAGCCTGCTGGCTGCGCTGGCCGCACTG 25 0.895633910854203 0.70831109986925 0.551872883200165 N Y 3.62617734898681 3.57592836747465 3.57592836747465 0 0.9938446472912952 0.0 Y 0.0 N Y 22402 183 ENSG00000099341 ENSG00000188766 + - 19 19 38874464 38886881 coding coding PSMD8 SPRED3 38865176 38879061 + + 0.0 38865601 38882586 + - N - - N SA470 2 0.0 1.05263157894737 1 1 3 Y N 0.0 0.0 19 1.21786792258515 1.05591740096479 1.21786792258515 1.05591740096479 4 - - 0.9909758426747808 HCT116-unstranded 10.0 1102537 CCTGGAGCAATACCTGATGGAGGGCAGCTACAACAAAGTGTTCCTGGCCAAGGGTAACATCCCCGCCGAGAGCTACACCTTCTTCATTGACATCCTGCTCGACACTATCAG|ACAACCTTGGAGTGTACACTGAAGCCAGGCTTGGTTTACAACAAGGTGAATCCCATCTTTCACCACTGGAGCCTGGGTGACTGCAAGTTTGGACTGACGTTTCAGAGCCCTGCAGAGGCTGATGAGTTCCAGAAGAGCCTGCTGGCTGCGCT 7 2.11328554387543e-05 0.965025999218809 0.7063332556441501 N Y 3.4944157718888 3.57592836747465 3.4944157718888 1 0.991025116025116 0.0 Y 0.0 N Y 22402 183 ENSG00000099341 ENSG00000188766 + - 19 19 38874464 38886881 coding coding PSMD8 SPRED3 38865176 38879061 + + 0.0 38871639 38882586 + - N - - N SA470 2 0.0 1.2 1 2 3 Y N 0.0 0.0 10 1.34742833988145 0.99113719231664 1.34742833988145 0.99113719231664 4 - - 0.9564529907912208 HCT116-unstranded 10.0 1037348 AGGGGGTGAACACACTGTGGGGTAGCTTCGAGATCAGCAATGTGAGACTAGCCCGGGTCATGCTGACACAGTTTGCCGAGGGGCGGCTGGAAGATCAACTGGACAAATATGATCACTGGGCTGACCGCTTTGAGGACCTGCCCCTCTATTTCATGACTTTCCATGGACAGCAAAGCAT|CAGGTCGCCTGCGAGGCCGCTGGCCAGGCCTGAGCCTCTGCCACCATGGCCATTGTGCAGACTCTGCCAGTGCCACTGGAGCCTGCTCCTGAAGCTGCCACTGCCCCACAAGCTCCAGTCATGGGTAGTGTGAGCAGCCTTATCTCAGGCCGGCCCTGTCCCGGGGGGCCAGCTCCTCCCCGCCACCACGGCCCTCCTGGGCCCACCTTCTTCCG 26 1.0 0.639985057323719 0.348088349433136 Y Y 3.42576922243396 3.2950008623125 3.2950008623125 4 0.0 0.0 Y 0.0 N Y 26189 8708 ENSG00000107815 ENSG00000107816 + - 10 10 102754158 102767593 coding utr5p C10orf2 LZTS2 102747124 102756375 + + 0.0 102749641 102762254 + - N - - N SA470 1 0.0 1.0 1 0 2 N Y 0.0 0.0 21 1.17899979739626 1.40573052766478 1.40573052766478 1.17899979739626 4 - - 0.980819506842528 HCT116-unstranded 10.0 965742 AGGCTCTGGCTCTGCAGCTTCTCAGTGATGAGTGTGACCATGGTCGGGGCCCCGTGTCCTCCGTCCACACCAACAGGCACTGGAGTCCTGGAACATCAGACTTGCGAAGGCCCCAGCATTGCTGGGTCAGCCAAATCTCAAGGTCATGTCTCCACTTTCTTTACAGATGAGCAGTCCACGCCCACGGGCTCTTCAGGATTTGTGCC|TCTCGGGTCTGCGCTCGGCGCCGCGGTGCTCTGCCTCCTCGGCGTCTTCGGGCCTCCAGCGCCTGCCGTCGGCTCTGCGCTTCCGTCCCAGGCTCCATCGCGCGGGGGACGGCGGGCTGCGGGGAGGGACGCGGTCGGCTGGGCACGGGAGGTTCGGGACCGCCTTACAACCTCCGCCCTCCCACACCCCGGCCCCGCACAACCCCCGCCCCACGGGGCACGCGCTCCCTCGCCC 31 0.837277875900479 0.9986318192254507 0.8414872328995021 Y Y 3.57063922744582 2.8234972677625203 2.8234972677625203 1 0.0 0.0 Y 0.0 N Y 1413 6019 ENSG00000174137 ENSG00000163950 - + 4 4 1686029 1714282 intron coding FAM53A SLBP 1619642 1694527 - - 0.0 1670632 1713601 + - N 20.5016496615614 4.10659475977372 N SA470 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 24 1.36038438161107 1.52881292409626 1.52881292409626 1.36038438161107 4 0.208333333333333 29 0.975344568732888 HCT116-unstranded 10.0 968056 GAGAGAGAAAATCATCATCAGGAAGTTCTGATTCAAAGGAGTCTATGTCTACTGTGCCGGCTGACTTTGAGACAGATGAAAGTGTCCTAATGAGGAGACAGAAGCAGATCAACTATGGGAAGAACACAATTGCCTACGATCGTTATATTAAAGAAGTCCCAAG|GCACAAATCCTGAAGAGCCCGTGGGCGTGGACTGCTCATCTGTAAAGAAAGTGGAGACATGACCTTGAGATTTGGCTGACCCAGCAATGCTGGGGCCTTCGCAAGTCTGATGTTCCAGGACTCCAGTGCCTGTTGGTGTGGACGGAGGACACGGGGCCCCGACCATGGTCACACTCATCACTGAGAAGCT 8 1.0 0.417764794064253 0.61257822543966 Y Y 3.65488030998075 3.57063922744582 3.57063922744582 0 0.0 0.0 Y 0.0 N Y 6019 1413 ENSG00000163950 ENSG00000174137 + - 4 4 1714282 1686029 coding utr5p SLBP FAM53A 1694527 1619642 - - 0.0 1701291 1670632 - + N - - N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 7 1.04943938009997 1.08182948442405 1.08182948442405 1.04943938009997 4 - - 0.988192758555385 HCT116-unstranded 10.0 967930 CAGTGATGAGTGTGACCATGGTCGGGGCCCCGTGTCCTCCGTCCACACCAACAGGCACTGGAGTCCTGGAACATCAGACTTGCGAAGGCCCCAGCATTGCTGGGTCAGCCAAATCTCAAGGTCATGTCTCCACTTTCTTTACAGATGAGCAGTCCACGCCCACGGGCTCTTCAGGATTTGTGC|TTCTCCTCGGGACTCGGGTGTCCCTGACTTCCACGTGTTCACGAGAAGCTCGTCAGAGACCCTGACCTCTCCCGGGAGCACAACACAGACTCGAACTGGCTAACTCGGGCTGACGCCGGTTCAGCTGACTCCCATCCTGGCAAGAGGCTTCCGGAGTGTTCCAGCGCCTCC 6 1.0 0.8100465465006429 0.5826198981270849 Y Y 3.57063922744582 3.1599722420354803 3.1599722420354803 0 0.0 0.0028169014084507 Y 0.0 N N 1413 6019 ENSG00000174137 ENSG00000163950 - + 4 4 1686029 1714282 utr5p intron FAM53A SLBP 1619642 1694527 - - 0.0 1670632 1713261 + - N - 4.0994512232565 N SA470 1 0.0 1.0 1 0 2 N Y 0.0 0.0 9 1.19843385999071 1.04943938009997 1.19843385999071 1.04943938009997 4 - 77.4444444444444 0.994848257334812 HCT116-unstranded 10.0 967932 GTGAGGTCGTCCAGGCTCTGGCTCTGCAGCTTCTCAGTGATGAGTGTGACCATGGTCGGGGCCCCGTGTCCTCCGTCCACACCAACAGGCACTGGAGTCCTGGAACATCAGACTTGCGAAGGCCCCAGCATTGCTGGGTCAGCCAAATCTCAAGGTCATGTCTCCACTTTCTTTACAGATGAGCAGTCCACGCCCACGGGCTCTTCAGGATTTGTG|CCTGGCGTCACCGTCGCAGCGGCTCTGATGCCTCGGCGGGCTTCGCGGGCGGCAGGCCATGGCAGCACGGGCCGGGCGCGCAGCGCAGGGCCGAGGCTGAGGCGGCGGCGGCGCGGGCAGAGAGCGCAGAGTAGAGCAGGGCAGGGCCTGAGGCAGAAACCCGCGTCCCCGCGCCGGCGC 76 0.902112542141957 0.511034042527508 0.6911486493993471 Y Y 3.57063922744582 3.39271690522525 3.39271690522525 0 0.0 0.0025188916876574 Y 0.0025188916876574 N Y 1413 6019 ENSG00000174137 ENSG00000163950 - + 4 4 1686029 1714282 utr5p intron FAM53A SLBP 1619642 1694527 - - 0.0 1670632 1713857 + - N - 5.92921723491396 N SA470 1 0.538888888888889 1.0 1 0 2 N Y 0.0 0.538888888888889 89 1.4381206319888502 1.16604375566664 1.4381206319888502 1.16604375566664 4 - 5.82022471910112 0.988418854800016 HCT116-unstranded 10.0 221930 GAGGACCCTATCCTGGCCTACACAGCTGAAGGAGAGATCAACAATGTGCAGTGGGCATCAACTCAGCCCGACTGGATCGCCATCTGCTACAACAACTGCCTGGAGATACTCAGAGTGTAGTGTTGGTGGCGCTGTGCCCACGAGGCAGGGGCTTTTGTATTTCCTGCCTCTGCCCCACCCCCAAA|AAGGAGGCCCCAACCCTGAGCACAACAGCAACCTGGCCAATATCTTAGAGGTGTGTCGCAGCAAACATATGCCCAAGTCAACGATTGAGACAGCACTGAAAATGGAGAAATCCAAGGACACTTATTTGCTGTATGAGGGTCGAGGCCCTGGTGGCTCTTCTCTGCTCATCGAGGCATTATC 11 0.976014567637919 0.8865872254082958 0.488990067877692 Y Y 3.1436806664259302 3.13015227288562 3.13015227288562 0 0.0 0.0 Y 0.0 N Y 15765 2750 ENSG00000136485 ENSG00000136463 + - 17 17 61671639 61685725 utr3p coding DCAF7 TACO1 61627822 61678231 + + 0.0 61666599 61681894 + - N - - N SA470 1 0.0 1.0 1 0 2 N Y 0.0 0.0 14 1.10126354701849 1.19843385999071 1.19843385999071 1.10126354701849 4 - - 0.994010411196582 HCT116-unstranded 10.0 221929 CTAGAACACAGCACCATCATTTACGAAGACCCACAGCATCACCCACTGCTTCGCCTCTGCTGGAACAAGCAGGACCCTAACTACCTGGCCACCATGGCCATGGATGGAATGGAGGTGGTGATTCTAGATGTCCGGGTTCCCTGCACACCTGTCGCCAGGTTAAACAACCATCGAGCATGTGTCAATGGCATTGCTTGGGCCCCACATTCATCCTGCCACATCTGCACTGC|AGAAGGAGGCCCCAACCCTGAGCACAACAGCAACCTGGCCAATATCTTAGAGGTGTGTCGCAGCAAACATATGCCCAAGTCAACGATTGAGACAGCACTGAAAATGGAGAAATCCAAGGACACTTATTTGCTGTATGAGGGTCGAGGCCCTGGTGGCTCTTCTCTGCTCATCG 11 1.0 0.59500514750447 0.57660765621872 Y Y 3.12336605477048 3.15951758128887 3.12336605477048 0 0.0 0.0 Y 0.0 N Y 15765 2750 ENSG00000136485 ENSG00000136463 + - 17 17 61671639 61685725 coding coding DCAF7 TACO1 61627822 61678231 + + 0.0 61662690 61681894 + - N - - N SA470 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 6 1.0170492757759 1.03648333837034 1.03648333837034 1.0170492757759 4 - - 0.980554975803131 HCT116-unstranded 10.0 374533 CAGCAGGCGGCGAAGATGGCGGAGAACAGCGGTCGCGCCGGCAAGAGCAGCGGGAGCGGCGCGGGGAAGGGGGCGGTGTCCGCAGAGCAGGTGATTGCTGGCTTCAACCGCCTTCGGCAGGAACAGCGAGGCCTGGCATCCAAAGCAGCTGAGTTGGAGATGGAGTTGAATGAGCACAGCCTAGTGATCGATACACTGAAGGAGGTAGATGAAACTCGTAAGTGCTACCGCATGGTTGGAGGAGTGCTGGTGGAGCGAACTGTCAAAGAGGTGCTGCCCGCTTTGGAGAACAACAAGGA|GCAGGCCGGTGCCCCGCGGGTGAGCTGGAGACCTCAGACGTGGTAACTGTGGTGCTGGGCCAGGACGCAAAACTGCCCTGCTTCTACCGAGGGGACTCCGGCGAGCAAGTGGGGCAAGTGGCATGGGCTCGGGTGGACGCGGGCGAAGGCGCCCAGG 39 2.31798151432044e-06 0.400361320311641 0.411509933652906 N Y 3.46807512488172 3.36398343900777 3.36398343900777 0 0.0 0.0 Y 0.0 N Y 5497 767 ENSG00000143256 ENSG00000143217 + - 1 1 161087901 161059389 coding intron PFDN2 PVRL4 161070346 161040785 - - 0.0 161071838 161049739 - + N - 9.42702184849913 N SA470 1 0.0 1.0 1 0 1 N N 0.0 0.0 10 0.7579284411833129 0.952269067127752 0.952269067127752 0.7579284411833129 4 - 1 0.943730137144909 HCT116-unstranded 10.0 374531 CAACCGCCTTCGGCAGGAACAGCGAGGCCTGGCATCCAAAGCAGCTGAGTTGGAGATGGAGTTGAATGAGCACAGCCTAGTGATCGATACACTGAAGGAGGTAGATGAAACTCGTAAGTGCTACCGCATGGTTGGAGGAGTGCTGGTGGAGCGAACTGTCAAAGAGGTGCTGCCCGCTTTGGAGAACAACAAGGA|GCAGGCCGGTGCCCCGCGGGTGAGCTGGAGACCTCAGACGTGGTAACTGTGGTGCTGGGCCAGGACGCAAAACTGCCCTGCTTCTACCGAGGGGACTCCGGCGAGCAAGTGGGGCAAGTGGCATGGGCTCGGGTGGACGCGGGCGAAGGCGCCCAGGAACTAGCGCTACTGCACTCCAAATACGGGCTTCATGTGAGCCCGGCTTACGAGGGCCGCGTGGAGCAGCCGCCGCCCCCACGCAAC 42 0.7021718894542309 0.4337813633132511 0.414115055558414 N Y 3.46807512488172 3.36398343900777 3.36398343900777 0 0.0 0.0 Y 0.0 N Y 5497 767 ENSG00000143256 ENSG00000143217 + - 1 1 161087901 161059389 coding intron PFDN2 PVRL4 161070346 161040785 - - 0.0 161071838 161049739 - + N - 9.42702184849913 N SA470 1 0.0 1.0 1 0 1 N N 0.0 0.0 44 1.29560417296293 1.48346677804255 1.48346677804255 1.29560417296293 4 - 0.227272727272727 0.93085894173072 HCT116-unstranded 10.0 378768 GCCGGCCGGAAACCCAGCAGGCGGCGAAGATGGCGGAGAACAGCGGTCGCGCCGGCAAGAGCAGCGGGAGCGGCGCGGGGAAGGGGGCGGTGTCCGCAGAGC|GGTGCCTCCCCTGCCCTCACTGAATCCTGGTCCAGCACTAGAAGAGGGCCAGGGCCTGACCCTGGCAGCCTCCTGCACAGCTGAGGGCAGCCCAGCCCCCAGCGTGACCTGGGACACGGAGGTCAAAGGCACAACGTCCAGCCGTTCCTTCAAGCACTCCCGCTCTGCTGCCGTCACCTCAGAGTTCCACTTGGTGCCTAGCCGCAGCATGAATGGGCAGCCACTGACTTGT 1 0.57457659958367 0.832130481589324 0.8866598452446379 N Y 2.86696937872936 3.41103992525442 2.86696937872936 0 0.0 0.0 Y 0.0 N Y 5497 767 ENSG00000143256 ENSG00000143217 + - 1 1 161087901 161059389 coding coding PFDN2 PVRL4 161070346 161040785 - - 0.0 161087742 161047533 - + N - - N SA470 1 0.0 1.0 1 0 1 Y N 0.0 0.0 10 0.453461460537025 1.04296135923516 1.04296135923516 0.453461460537025 4 - - 0.937349704666454 HCT116-unstranded 10.0 383441 GTTCTGAAGTCGATCTTGGAGAAAGAGGGACCAAAGTCACTTTTTAGAGGCTTGGGTCCAAATTTGGTTGGAGTTGCACCATCAAGGGCTGTATACTTTGCATGTTACTCCAAAGCCAAAGAGCAATTTAATGGCATTTTCGTGCCTAACAGCAATATTGTGCATATTTTCTCAGCTGGCTCTGCAGCTTTTATCACAAATTCCTTAATGAATCCTATATGGATGGTTAAAACCCGAATGCAGCTAGAACAGAA|GATGAAGCCAACGCACACGATGGTCAACTGCTGGTTCTGCAACCAGGATACGCTGGTGCCCTATGGGAACCGCAACTGCTGGGACTGTCCCCACTGCGAGCAGTACAACGGCTTCCAGGAGAACGGCGACTACAACAAGCCGATC 26 1.0 0.8655248308390591 0.562059625871351 Y Y 3.60103760561896 3.75016368088976 3.60103760561896 1 0.00249999999999984 0.0 Y 0.00249999999999984 N Y 3308 14961 ENSG00000171612 ENSG00000188807 + - 1 1 9642831 9674935 coding coding SLC25A33 TMEM201 9599541 9648932 + + 0.00249999999999984 9633470 9655948 + - N - - N SA470 2 0.0 2.0 2 15 3 Y Y 0.0 0.0 15 1.36038438161107 0.958747087992567 1.36038438161107 0.958747087992567 4 - - 0.9325550038092908 HCT116-unstranded 10.0 967767 GGTTTCCCCGACATGCCTGAATGATAAATATCTTGGGTTTTCCAACCAGGCTGTGACACTTGTCTCCTTTGAACAAGCCAGTTAATGTCTGAATTTCGATTTTAGCATCATATGCATAAATGTGATTGCCTTCGCCATGGCTCAGGAAGACACACACAAAGCAATCGGCATCTGCGTGGCTAACAGTTGACA|CCTGAACATGCTGAGTTAGTCCTAGTGTTTTCTGTACATCTCGGCAGATCTTGGAGAGGCAATACTGGAATTCTTCATCACAGTCATTCTTGCTTTTGCCACAGGTCTCATAGCACCTGTCGTGTTGGTTGCAACACTTTGTCAGGGAAGGGATACCAATGTTAAGCTGCA 20 0.8049660136972231 0.914347429241096 0.391739036648081 Y Y 3.6329237143086 3.6052936758779 3.6052936758779 0 0.0 0.0 Y 0.0 N Y 506 2428 ENSG00000138794 ENSG00000123739 - + 4 4 110624739 110651233 coding coding CASP6 PLA2G12A 110609785 110631145 - - 0.0 110615856 110638704 + - N - 0.375373876043077 N SA470 2 0.0 1.5666666666666698 1 17 2 Y Y 0.0 0.0 30 1.25025802690923 1.09478552615367 1.25025802690923 1.09478552615367 4 - 8.46666666666667 0.958964636170855 HCT116-unstranded 10.0 967769 CTGAATGATAAATATCTTGGGTTTTCCAACCAGGCTGTGACACTTGTCTCCTTTGAACAAGCCAGTTAATGTCTGAATTTCGATTTTAGCATCATATGCATAAATGTGATTGCCTTCGCCATGGCTCAGGAAGACACACACAAAGCAATCGGCATCTGCGTGGCTAACAGTTGACA|CCCAGTTGCCTTGCATGTGGCTCAATATTTAGCCATTGACTACAATTCAGGGTTTTCACATTTACACTCTGGCTTTTATCCAGTCTGAATGAGTTATCTGACCACCAGAACTTCCAGTCCTTTGGCCTCACTTTCAGGGTCTCTGAGTCCTGAAAACATTCCCTCGACAAGAG 3 0.923288519126914 0.680963058596127 0.0505831636529334 Y Y 3.6329237143086 3.5691116441359703 3.5691116441359703 2 0.0 0.0 Y 0.0143848059454997 N N 506 2428 ENSG00000138794 ENSG00000123739 - + 4 4 110624739 110651233 coding downstream CASP6 PLA2G12A 110609785 110631145 - - 0.0 110615856 110629611 + - N - - N SA470 1 0.0 1.0 1 0 2 N Y 0.0 0.0 5 0.8745328167499771 1.0235272966407098 1.0235272966407098 0.8745328167499771 4 - - 0.989027350018282 HCT116-unstranded 10.0 375568 TACAGATCCAGAGCGGGTGGAGGTGCTGCTCATCATGCTGTCACAGCTGCCGACACGGGTCACGGGTTCTGAGCCAGTCCCCGCTGGCCACAGCTCCCTCTCGGGCATCACCCGAAACAAGGTGCAGGGATGGCAAAGGGGGCTTCTAGAGGGGAAGCGAGGGGAAGTGAACAATGTCCCAAGCCGGGC|CAGATTGGATGGGCAAGTCTTCCAGAATGGTATCCCCATTGCTGAGATCCAGGCACTCGGGAGGGTATCCGACGAGGATTCGCTGACCGCCGGGGGCGATCCCGGTGATGGCGGCAATTTGGCCCTGGAGTTCCCGCACCC 6 1.0 0.650945600663349 0.219231731290414 N Y 3.2668017624283303 3.55553920790569 3.2668017624283303 0 0.0 0.0 Y 0.0 N Y 2178 10382 ENSG00000182795 ENSG00000180667 - + 1 1 207206101 207226325 utr5p coding C1orf116 YOD1 207191866 207217194 - - 0.0 207201024 207224033 + - N 1.50107424206254 2.32863999709465 N SA470 1 0.0 1.0 1 0 1 Y N 0.0 0.0 5 0.8810108376147909 0.8356646915610891 0.8810108376147909 0.8356646915610891 4 18.6 102.8 0.9788809530744128 HCT116-unstranded 10.0 379930 AGCCGGACCCGGGTGCGGGAACTCCAGGGCCAAATTGCCGCCATCACCGGGATCGCCCCCGGCGGTCAGCGAATCCTCGTCGGATACCCTCCCGAGTGCCTGGATCTCAGCAATGGGGATACCATTCTGGAAGACTTGCCCATCCAATCT|GGAGGTCCAGAGGAGACCATCACTCAGCAAGGACGAACGCCAAGGACAGTAACTGAGTCCAGCTCATCCCACCCTCCTGAGCCCCAGGGCCTAGGCCTCAGGTCTGGCTCCTACAGCCTCCCTAGGAATATCCACATTGCCAGAAGCCAGAACTTCAGGAAAAGCACCACCCAGGCTAGCAGTCACAACCCTGGAGAACCGGGGAGGCTTGCGCCAGA 15 1.0 0.738301955792815 0.3858999210780589 N Y 3.5555392079057 3.45504124488137 3.45504124488137 0 0.0 0.0 Y 0.0 N Y 10382 2178 ENSG00000180667 ENSG00000182795 + - 1 1 207226325 207206101 coding coding YOD1 C1orf116 207217194 207191866 - - 0.0 207224033 207196825 - + N - - N SA470 1 0.0 1.0 1 0 1 Y N 0.0 0.0 16 0.965225108857382 1.34742833988145 1.34742833988145 0.965225108857382 4 - - 0.990940289148492 HCT116-unstranded 10.0 1100847 CTTCACTGGTAATGTGTCCATTCGAGGGCGGATCCTCTCTGGCGTGGTGACCAAGATGAAGATGCAGAGGACCATTGTCATCCGCCGAGACTATCTGCACTACATCCGCAAGTACAACCGCTTCGAGAAGCGCCACAAGAACATGTCTGTACACCTGTCCCCCTGCTT|CAGAGCCCCCCTCCATGCGCCTGAAGGCCCGACCCAGCAGCCCTGGCTTTTCCGTGCTTACCTGCAGCGCCTTCTCCTTCTACCCTCCGGAGCTGCAACTTCGGTTCCTGCGGAATGGGCTGGCCGCTGGCACCGGCCAGGGTGACTTCGGCCCCAACAGTGACGGATCCTTCCACGCCTCGTCGTCACTAACAGTCAAAAGTGGCGAT 19 1.0 0.511159705584957 0.45648631594822 N Y 3.59102838701478 3.16316473730098 3.16316473730098 1 0.994063366087176 0.0 Y 0.00264550264550267 N Y 104717 344 ENSG00000142534 ENSG00000104870 + - 19 19 50002944 50029685 coding intron RPS11 FCGRT 49999634 50015536 + + 0.0 50001303 50027764 + - N - 0.156217299828465 N SA470 3 0.0 1.64285714285714 1 8 2 N N 0.0 0.0 14 1.07535146355923 1.29560417296293 1.29560417296293 1.07535146355923 4 - 1.35714285714286 0.9339022287627 HCT116-unstranded 10.0 1096727 TCCCAGCATGCCCTGGGTTACCTATGGCCCTCTTTCCCATGGGACCTGACCTATGATCGGCCCCCGCTCCTAGGCGTGGTGACCAAGATGAAGATGCAGAGGACCATTGTCATCCGCCGAGACTATCTGCACTACATCCGCAAGTACAACCGCTTCGAGAAGCGCCACAAGAACATGTCTGTACACCTGTCCCCCTGCTT|CAGAGCCCCCCTCCATGCGCCTGAAGGCCCGACCCAGCAGCCCTGGCTTTTCCGTGCTTACCTGCAGCGCCTTCTCCTTCTACCCTCCGGAGCTGCAACTTCGGTTCCTG 19 0.7158112284392841 0.511159705584957 0.45648631594822 N Y 3.59102838701478 3.16316473730098 3.16316473730098 0 0.9909383221280328 0.0 Y 0.0 N Y 104717 344 ENSG00000142534 ENSG00000104870 + - 19 19 50002944 50029685 coding intron RPS11 FCGRT 49999634 50015536 + + 0.0 50001303 50027764 + - N 1.61458371074488 0.156217299828465 N SA470 2 0.0 1.2 1 1 2 N N 0.0 0.0 5 0.9198789628036792 0.518241669185171 0.9198789628036792 0.518241669185171 4 9273.6 3.8 0.9564177113514368 HCT116-unstranded 10.0 384216 CCAGATGATGGGATTTATTGGCAGGCCAACCTTGACAGATTCCACCAACACTTCCGTGACCAAGCCATTGTGAGCGCAGTTGCTAACAGGATGGACCAGACAAGCAGCGAGATTGTGCGAACCATGCTCCGAATGAGTGAGATTACCACTTCCTCTAGTGCTCCCTTCACCCAGCCATTGTCTTCCAATG|AGGTGGGCACGTGGAACTTGAGGAGGAGGTAACCAGTCAGCTGATCCAACCTGAGCCAAGAGACCCATGCCTGGGACCATCTTGGGTGTGGGCTGAGGGAGGGGCAAGCAAAAGGACTTGGAAGAGTCAGGCACTGGCCCCTCTGATGTGTCTTCTCTGACTCCCAGCTGCTGGACGGAGGGCTTCGAGAACTTTGGGAGGAGAGTGG 9 0.5756567216184321 0.9877651372863708 0.6558970406846779 Y Y 3.36720643949681 3.52720696927234 3.36720643949681 2 0.99475003297718 0.0 Y 0.0 N Y 1634 1330 ENSG00000186141 ENSG00000186364 + - 1 1 145611025 145590461 coding coding POLR3C NUDT17 145592605 145586115 - - 0.0 145601530 145588635 - + N - - N SA470 1 0.0 1.0 1 0 4 Y Y 0.0 0.0 7 1.24378000604441 1.2826481312333 1.2826481312333 1.24378000604441 4 - - 0.9937791697056568 HCT116-unstranded 10.0 368550 CAGCTCCTGAACGTCAGCAGCTAGAGACCCTGAAACGTAATGTCAACAAGTTGGATGCCAGTGAGATCCAGGTGGACGAAACCATCTTCCTGCTGGAGTCTTACATTGAGTGCACCATGAAGAGACAGTGATCCAGAAGAAGCATCTTCCTCAGAAGATCTGGGGGGATGGAAAGCAAAATAAAGGAG|CTGCTGGACGGAGGGCTTCGAGAACTTTGGGAGGAGAGTGGACTACACCTGCCCCAGGGCCAGTTCTCTTGGGTCCCTCTGGGTTTATGGGAGTCTGCCTACCCTCCTAGGCTGAGCTGGGGTTTACCCAAATACCATCACATTGTTCTGTATCTACTCGTGATCTCCCAGGAATCACAGCAGCAGTTGCAGGCCCGGATC 6 1.0 0.63071104854552 0.116633487447705 Y Y 3.09000579593348 3.1641978070708703 3.09000579593348 0 0.994694489907256 0.0 Y 0.0 N N 1634 1330 ENSG00000186141 ENSG00000186364 + - 1 1 145611025 145590461 utr3p coding POLR3C NUDT17 145592605 145586115 - - 0.0 145592633 145588470 - + N - - N SA470 1 0.0 1.0 1 0 4 Y Y 0.0 0.0 7 1.16604375566664 1.36038438161107 1.36038438161107 1.16604375566664 4 - - 0.971288441686692 HCT116-unstranded 10.0 382341 CTGTTGTGAAGAAAGTGGCAGACCGGCTCACAGAGACCATGGAGGATGGCAAGACCATGGACTATGCTGAAGTATCAAACACATTTGTGCGACTGGCAGACACACACTTTGTACAACGCTGCCCTTCGGTACCTACCACTGAGAATTCAGACCCTGGGCCACCACCACCTGCCCCCACACTTGTCATTAATGAAAAGGACATGTACCTGGTTCCTAAACTCAGCTTGAT|AGGTGGGCACGTGGAACTTGAGGAGGAGGTAACCAGTCAGCTGATCCAACCTGAGCCAAGAGACCCATGCCTGGGACCATCTTGGGTGTGGGCTGAGGGAGGGGCAAGCAAAAGGACTTGGAAGAGTCAGGCACTGGCCCCTCTGATGTGTCTTCTCTGACTCCCAGCTGCTGGACGGAGGGCTTCGAGAACTTTGGGAGGAGAGTGGACTACACCTGCCCCAGGGCCAGTTCTCTTGGGTCCCTCTG 17 0.8648303791691629 0.8799324079068922 0.4220456820098541 Y Y 3.7061623612628 3.52720696927234 3.52720696927234 0 0.995642323363359 0.0 Y 0.0 N Y 1634 1330 ENSG00000186141 ENSG00000186364 + - 1 1 145611025 145590461 coding intron POLR3C NUDT17 145592605 145586115 - - 0.0 145608108 145588635 - + N - 1.16860960441971 N SA470 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 24 1.51585688236663 1.5482469866907 1.5482469866907 1.51585688236663 4 - 3.91666666666667 0.993718818353945 HCT116-unstranded 10.0 384218 ACCAACACTTCCGTGACCAAGCCATTGTGAGCGCAGTTGCTAACAGGATGGACCAGACAAGCAGCGAGATTGTGCGAACCATGCTCCGAATGAGTGAGATTACCACTTCCTCTAGTGCTCCCTTCACCCAGCCATTGTCTTCCAAT|GAGTCTGCCTACCCTCCTAGGCTGAGCTGGGGTTTACCCAAATACCATCACATTGTTCTGTATCTACTCGTGATCTCCCAGGAATCACAGCAGCAGTTGCAGGCCCGGATCCAACCAAACCCAAATGAGGTGAGCGCCCTTATGTGGC 2 0.00605583193322529 0.975433098222357 0.261926420849096 Y Y 3.35463656781289 3.3257657729496004 3.3257657729496004 0 0.993173902948688 0.0 Y 0.0 N Y 1634 1330 ENSG00000186141 ENSG00000186364 + - 1 1 145611025 145590461 coding coding POLR3C NUDT17 145592605 145586115 - - 0.0 145601530 145587818 - + N - - N SA470 1 0.0 1.0 1 0 4 Y Y 0.0 0.0 7 0.900444900209235 1.14660969307219 1.14660969307219 0.900444900209235 4 - - 0.985077794568294 HCT116-unstranded 10.0 373303 TGGCAAGACCATGGACTATGCTGAAGTATCAAACACATTTGTGCGACTGGCAGACACACACTTTGTACAACGCTGCCCTTCGGTACCTACCACTGAGAATTCAGACCCTGGGCCACCACCACCTGCCCCCACACTTGTCATTAATGAAAAGGACATGTACCTGGTTCCTAAACTCAGCTTGATA|GGTGGGCACGTGGAACTTGAGGAGGAGCTGCTGGACGGAGGGCTTCGAGAACTTTGGGAGGAGAGTGGACTACACCTGCCCCAGGGCCAGTTCTCTTGGGTCCCTCTGGGTTTATGGGAGTCTGCCTACCCTCCTAGGCTGAGCTGGGGTTTACCCAAATACCA 9 0.986803817716835 0.33922574008177503 0.312755131760851 Y Y 3.7061623612628 3.2771723558232795 3.2771723558232795 1 0.99391991054581 0.0 Y 0.00894541896708378 N Y 1634 1330 ENSG00000186141 ENSG00000186364 + - 1 1 145611025 145590461 coding coding POLR3C NUDT17 145592605 145586115 - - 0.0 145608108 145588635 - + N - - N SA470 1 0.0 1.0 1 0 4 Y Y 0.0 0.0 5 1.06887344269442 0.8486207332907181 1.06887344269442 0.8486207332907181 4 - - 0.985320788050735 HCT116-unstranded 10.0 217635 CTGCCTGCTCTCTACAGGGCCTGGGGCCGGTGTCACGGGCTCAGGGACTTGGAGACACAGGGACCTGCTCTGTCTCTTGCCCGCGGCTGGACACGCGGCCTCCTCGGGCTGTGAGCAGACCCGACTGGCCCTGGGTGGCGTGGGGAGGGCCGAGCCAGGATTCCGGGAGGGCGGATCCATAATTCATCTCCTCTAGAGCGCCTTGGGTTTCAC|CCACGTGCTCCACTGAGGCCCCTTTCCGGAGAATGATGGCGTCTGTGAAGTCTGGCCTCTCTGCAGGGCAGGATGGGGAGAACGTCAGCCACACATCAGGGCCCACACTGCCATCTTGTGATTCTGCGCGAGGGAAGAGCTGGCCACAGAGGCCCTTTCGGTCTCCTTGCCTTGGCCTAACCTCCCCCTGACATCCAGCACACCCTCCACAT 20 1.0 0.667035965678224 0.578418478251618 Y Y 3.63552422018169 3.63296356710195 3.63296356710195 0 0.0 0.00234741784037573 Y 0.0 N Y 681 3461 ENSG00000091536 ENSG00000108591 - + 17 17 18083116 18011285 utr5p intron MYO15A DRG2 18012020 17991200 + + 0.0 18021896 18007995 - + N - 0.429857108307957 N SA470 1 0.0 1.0 1 0 2 N Y 0.0 0.0 9 1.41868656939441 1.3733404233407 1.41868656939441 1.3733404233407 4 - 74.4444444444444 0.9909758426747808 HCT116-unstranded 10.0 220919 TATAACAAAATCGACCAGATCTCCATGGAAGAGGTGGACCGCCTGGCCCGAAAACCCAACAGTGTGGTCATCAGCTGCGGCATGAAGCTGAACCTGGACTATCTGCTGGAGATGCTTTGGGAGTACTTGGCCCTGACCTGCATCTACACCAAGAAGAGAGGACAGAGGCCAGACTTCACAGACGCCATCATTCTCCGGAAAGGGGCCTCAGTGGAGCACGTG|GGTGAAACCCAAGGCGCTCTAGAGGAGATGAATTATGGATCCGCCCTCCCGGAATCCTGGCTCGGCCCTCCCCACGCCACCCAGGGCCAGTCGGGTCTGCTCACAGCCCGAGGAGGCCGCGTGTCCAGCCGCGGGCAAGAGACAGAGCAGGTCCCTG 17 0.489358864908083 0.7829691025983392 0.7970323192398671 Y Y 3.65488030998075 3.6035982586987 3.6035982586987 0 0.0 0.0 Y 0.00263157894736854 N Y 3461 681 ENSG00000108591 ENSG00000091536 + - 17 17 18011285 18083116 coding utr5p DRG2 MYO15A 17991200 18012020 + + 0.0 18007995 18021896 + - N - 0.445372498833886 N SA470 1 0.0 1.0 1 0 2 N Y 0.0 0.0 6 0.939313025398123 0.7449723994536841 0.939313025398123 0.7449723994536841 4 - 0.666666666666667 0.9932609216694972 HCT116-unstranded 10.0 166386 TGGAACTATTACAGAATTCTGCACTGAAGCAAGCTGTCCAGTCATGTCTGCAGGTCCGAGATATGAATATCACTGGGCAGATGGTACTAATATTAAAAAGCCAATCAAATGTTCTGCACCAAAATACATTGACTATTTGATGACTTGGGTTCAAGATCAGCTTGATGATGAAACTCTTTTTCCTTCTAAGATT|GGCACTAAAAGAAGAAATCAAAGAGATGCATGGATTGCGGATATTTACCTCTGTCCCCAAACGCTGACCACGCCCTGGCTGCATAGATGCTGCTGCTTAAGACCTTGGATGAACTTCACTGACATCATTCTTCCCTAAGCAGTCACCAAAAAATTTATATATTTTGCTCATATACATTTCCATATTATAATTATAGAAGATGTATAA 4 0.9993295060981492 0.43195351273094 0.8606054958194409 N Y 3.28040470388214 3.3855294595259906 3.28040470388214 3 0.0 0.0 Y 0.007662191671081291 N Y 6961 2303 ENSG00000114978 ENSG00000163170 + - 2 2 74406025 74375121 coding intron MOB1A BOLA3 74382165 74362525 - - 0.0 74392345 74362785 - + N - 8.3995564547512 N SA470 3 0.0 1.33333333333333 1 1 2 Y N 0.0 0.0 6 1.21786792258515 0.8421427124259041 1.21786792258515 0.8421427124259041 4 - 237.833333333333 0.946968720814106 HCT116-unstranded 10.0 162391 CAAAGAAGAATATCCCTGAAGGATCTCATCAGTATGAACTCTTAAAACATGCAGAAGCAACTCTAGGAAGTGGGAATCTGAGACAAGCTGTTATGTTGCCTGAGGGAGAGGATCTCAATGAATGGATTGCTGTGAACACTGTGGATTTCTTTAACCAGATCAACATGTTATATGGAACTATTACAGAATTCTGCACTGAAGCAAGCTGTCCAGTCATGTCTGCAGGTCCG|AGGCACTAAAAGAAGAAATCAAAGAGATGCATGGATTGCGGATATTTACCTCTGTCCCCAAACGCTGACCACGCCCTGGCTGCATAGATGCTGCTGCTTAAGACCTTGGATGAACTTCACTGACATCATTCTTCCCTAAGCAGTCACCAAAAAATTTATATATTTTGCTCATATACATTTCCATATTATAATTATAGAAGATG 27 1.0 0.5396567716002779 0.648566980313879 N Y 3.56183091248087 3.3636127166471805 3.3636127166471805 0 0.0 0.0 Y 0.0 N Y 6961 2303 ENSG00000114978 ENSG00000163170 + - 2 2 74406025 74375121 coding intron MOB1A BOLA3 74382165 74362525 - - 0.0 74394141 74362785 - + N - 8.3995564547512 N SA470 3 0.0 1.7037037037037 1 14 2 N N 0.0 0.0 27 1.502900840637 1.327994277287 1.502900840637 1.327994277287 4 - 52.8518518518519 0.950091080360378 HCT116-unstranded 10.0 160969 GCTTCCTCTTCAGCCGCTCTTCTAAAACATTCAAACCAAAGAAGAATATCCCTGAAGGATCTCATCAGTATGAACTCTTAAAACATGCAGAAGCAACTCTAGGAAGTGGGAATCTGAGACAAGCTGTTATGTTGCCTGAGGGAGAGGATCTCAATGAATGGATTGCTGTGAACACTGTGGATTTCTTTAACCAGATCAACATGTTATATGGAACTATTACAGAATTCTGCACTGAAGCAAGCTGTCCAGTCATGTCTGCAGGTCCG|AGGCACTAAAAGAAGAAATCAAAGAGATGCATGGATTGCGGATATTTACCTCTGTCCCCAAACGCTGACCACGCCCTGGCTGCATAGATGCTGCTGCTTAAGACCTTGGATGAACTTCACTGACATCATTCTTCCCTAAGCAGTCACCAAAAAATTTATA 27 0.0036214729571703397 0.5396567716002779 0.648566980313879 N Y 3.56183091248087 3.3636127166471805 3.3636127166471805 0 0.0 0.0 Y 0.0 N Y 6961 2303 ENSG00000114978 ENSG00000163170 + - 2 2 74406025 74375121 coding coding MOB1A BOLA3 74382165 74362525 - - 0.0 74394141 74362785 - + N - - N SA470 3 0.0 1.8 1 3 2 N N 0.0 0.0 5 0.855098754155533 0.958747087992567 0.958747087992567 0.855098754155533 4 - - 0.9074273847688208 HCT116-unstranded 10.0 654868 TTTGGAAAGGCAGATTGATATACTAGGACGACCAGTCTCAGCTCGCGTACATGGACATAGGGTACTCTGGGAGGAGGTAGTACATTCAGCATCTGCACCAGAGCCTCCAAATACTCAGCTCCAATCTGAGGCAACCCAACATAAATCTCCAGTGCCCCAAGAGTCACAAGAGAGAG|AAGTGTTCCTGAAAACTCGTCAATTACAGGAAAAGCTGCATGACTGCATCTTTAGAGGAGATGGTTTCGCTGGTTCCAAGGATTCTGTTAATGAGAAAACTCCACAGGCCAGCATTCTGTAAGCTGGCTCCAGCAGCCCAGTTGACAGTGGCTGAGGCCAGTTCCTGATCATCCTGAGGAACAC 7 0.649230412212329 0.377140675538437 0.321580222835079 Y Y 3.30484224704734 3.6800200533486 3.30484224704734 0 0.0 0.0 Y 0.0 N Y 1802 255 ENSG00000198315 ENSG00000226314 + - 6 6 28124089 28137372 coding intron ZNF192 ZNF192P1 28109716 28129559 + + 0.0 28117402 28130358 + - N - - N SA470 1 0.0 1.0 1 0 2 N Y 0.0 0.0 9 1.10126354701849 1.17899979739626 1.17899979739626 1.10126354701849 4 - - 0.978794807815745 HCT116-unstranded 10.0 654869 ATTAGAGGATTTGGAAAGGCAGATTGATATACTAGGACGACCAGTCTCAGCTCGCGTACATGGACATAGGGTACTCTGGGAGGAGGTAGTACATTCAGCATCTGCACCAGAGCCTCCAAATACTCAGCTCCAATCTGAGGCAACCCAACATAAATCTCCAGTGCCCCAAGAGTCACAAGAGAGAG|GAATCAAGGCCAGAGGTGTGAACAAGGTGTCAGCTCTGAAGGGAAGGTTTTTCTAAGGATGGACCCACACCAGAAGGTCCCTAGCATATATAATGGGGATACTTTACAAACTCCTGAGTATGAAAAAGTCTCTCAGTATGAGGACCAGTTAGAAAGGCATGAGGGTA 13 0.991031374689214 0.7844602155482541 0.107598572807449 Y Y 3.30484224704734 3.5231187328827502 3.30484224704734 0 0.0 0.0 Y 0.0 N Y 1802 255 ENSG00000198315 ENSG00000226314 + - 6 6 28124089 28137372 coding intron ZNF192 ZNF192P1 28109716 28129559 + + 0.0 28117402 28134279 + - N - - N SA470 1 0.0 1.0 1 0 2 N Y 0.0 0.0 9 1.18547781826108 0.958747087992567 1.18547781826108 0.958747087992567 4 - - 0.992339981631 HCT116-unstranded 10.0 6887 GGGTGTACCCCACCCCTTCCCACTTTAATAAACGTGCTCCCTGTTGGGTGTCATCTGTGAAGACTGCCAGGCCTAGGCTCTCTGTAGAGAGTCTTCAAGATCCCGGAGTGGTAGCGCTGTCTCCTGGTGAAGGAGTATTTGTCACACTGGAATGTGACTGTGTGTGTAT|ATCCACTTCATCCAAGCCCAGCTTCGCAGACCTCTGGCGCCCGGCGGGTTCCCAGTTCCCCCGCTTCTTCCGAGGAGACAGCGGAGGCGAGGCCACCGGGCTGTCAGGCTGAAGCTCCGTGGCCGCCGGGTCCTGCACGCAGAGAAGACCCCAGCGCCGGCGCGGCTCAGGGCTGGGCCCACGGGACTCCGGACGCGCCGCGAAAGCGTT 2 0.8773779456041899 0.3885662481930189 0.648936411736885 Y Y 3.35715736809928 3.51952501003312 3.35715736809928 0 0.0 0.0 Y 0.0 N N 1691 176 ENSG00000134809 ENSG00000149150 + - 11 11 57298276 57283259 utr3p utr5p TIMM10 SLC43A1 57295936 57252007 - - 0.0 57295998 57283179 - + N - 3.32719875488081 N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 5 0.997615213181455 1.1919558391258898 1.1919558391258898 0.997615213181455 4 - 0.8 0.985231059099993 HCT116-unstranded 10.0 6928 ACCAGCCGCACGGGTCGGGGGCCAAAGCGGTCCATGAGGATCCCCAGTGGCAGGGTGGTGGCGCTGAGCACGAAGGAACCAATGGTGAAGCCCAGGTTGAGCATCTCGTCCTGCTGGTCACAGCCTGGCCACCTGCGCTGCTCATCCTGGGTGGTGTTGGTGCTGCTCTCAG|ACACACAGTCACATTCCAGTGTGACAAATACTCCTTCACCAGGAGACAGCGCTACCACTCCGGGATCTTGAAGACTCTCTACAGAGAGCCTAGGCCTGGCAGTCTTCACAGATGACACCCAACAGGGAGCACGTTTATTAAAGTGGGAAGGGGTGGGGTACACCCCAGGGTGTATACTGACAGGGACCTCATGCAGGCCCAGAGCTCTG 7 1.0 0.155070068149815 0.557883705692327 Y Y 3.14946850989133 3.32523140661629 3.14946850989133 1 0.0 0.0 Y 0.0 N N 176 1691 ENSG00000149150 ENSG00000134809 - + 11 11 57283259 57298276 coding utr3p SLC43A1 TIMM10 57252007 57295936 - - 0.0 57268802 57296002 + - N - 0.0247132716262567 N SA470 1 0.004739336492891 1.0 1 0 1 N Y 0.0 0.004739336492891 20 1.12717563047775 1.36686240247589 1.36686240247589 1.12717563047775 4 - 1.85 0.917260417042732 HCT116-unstranded 10.0 293827 GAACATCATCATGGCCATGGTCAAAGCTGGAGGTAGCCGCCAGGATTGCCATGAGAAAATCAGAGTGCTTTCTCAGCAGGCAGCTTCTGTGGTTAAGCAGGAAGGGGGTGACAATGACCTCATAGAGCGTATCCAGGTTGATGCCTACTTCAGTCCCATTCACTCCCAGTTGGATCATTTACTGGATCCTTCTTCTTTCACTGGTCGTGCCTCCCAGC|AGGGCAGATGATTCTGGACCAGATGAAGCCTGAGGAGCCTTCCAGCTCTAAGATAGCAGGATAGGAGACTTCTAAGATTGGAGCTGCAGAAGACTTGCCAGCCCACCAGCACAATGTCAGAAGGAAGAGTCAGCAGAGCAACCAGAGTTCTACTACGATGAGTTTGGTTTCCGTGTGTACAAGGAAGAAGGTGATGAGCCTGGCTCCAGTCTGCTGGCGAACTCCCCTCTGATGGAGGATG 27 0.48877779762115 0.8962043409863392 0.551695113251396 Y Y 3.51360402781852 3.3822971114671296 3.3822971114671296 0 0.995422816114878 0.0 Y 0.285959313921021 N Y 8802 6827 ENSG00000239900 ENSG00000100359 + - 22 22 40764823 40806122 coding utr5p ADSL SGSM3 40742507 40766595 + + 0.0 40761060 40796700 + - N - - N SA470 1 0.19396551724137887 1.0 1 0 5 N Y 0.0 0.19396551724137887 21 1.43164261112404 1.16604375566664 1.43164261112404 1.16604375566664 4 - - 0.9937791697056568 HCT116-unstranded 10.0 293686 AGATGGAGGAACCCTTTGAAAAACAGCAGATTGGCTCAAGTGCGATGCCATATAAGCGGAATCCCATGCGTTCAGAACGTTGCTGCAGTCTTGCCCGCCACCTGATGACCCTTGTCATGGACCCGCTACAGACAGCATCTGTCCAGTGGTTTGAACGCACACTGGATGATAGTGCCAACCGACGGATCTGTTTGGCCGAGGCATTTCTTACCGCAGATACTATATTGAATACGCTGCAGAACATTTCTGAAGGATTGGTCGTGTACCCCAAA|GGCAGATGATTCTGGACCAGATGAAGCCTGAGGAGCCTTCCAGCTCTAAGATAGCAGGATAGGAGACTTCTAAGATTGGAGCTGCAGAAGACTTGCCAGCCCACCAGCACAATGTCAGAAGGAAGAG 3 0.0903690976696634 0.805148469184978 0.509760519950985 Y Y 3.72448538129198 3.51525959220437 3.51525959220437 0 0.9921456692913392 0.0 Y 0.0 N Y 8802 6827 ENSG00000239900 ENSG00000100359 + - 22 22 40764823 40806122 coding utr5p ADSL SGSM3 40742507 40766595 + + 0.0 40759075 40796700 + - N - - N SA470 1 0.494845360824742 1.0 1 0 5 N Y 0.0 0.494845360824742 6 1.18547781826108 0.6283680238870201 1.18547781826108 0.6283680238870201 4 - - 0.988758154941366 HCT116-unstranded 10.0 294855 GGGCCACAGGCAGGTGTATGGCTTCCTGACATTGTGCTGGTGGGCTGGCAAGTCTTCTGCAGCTCCAATCTTAGAAGTCTCCTATCCTGCTATCTTAGAGCTGGAAGGCTCCTCAGGCTTCATCTGGTCCAGAATCATCTGC|CCAATCTGCTGTTTTTCAAAGGGTTCCTCCATCTCCTTGAGGTTTGCCAGGAGGCGTATGTCGGTGCAAATCTGGGGGAGGTAGGGGAATAAGCATCACCCCACACTGTCAGTGTGCAGTAGAGTCTGGGAGCTGTGACTAGGCTGATGAAGGAGATGAGCTCTTAGGTGTGCTGTGGCTGAGCTGAAGA 16 0.817302502344837 0.17899152794606302 0.756671824608703 Y Y 3.50268972052044 3.23999710710482 3.23999710710482 2 0.992978894387345 0.0 Y 0.0 N Y 6827 8802 ENSG00000100359 ENSG00000239900 - + 22 22 40806122 40764823 utr5p intron SGSM3 ADSL 40766595 40742507 + + 0.0 40796700 40757346 - + N - 3.31819000117221 N SA470 1 0.38059701492537296 1.0 1 0 5 N Y 0.38059701492537296 0.0 6 0.8680547958851621 0.971703129722196 0.971703129722196 0.8680547958851621 4 - 340 0.9183455828605122 HCT116-unstranded 10.0 294533 CACTCAGGCCAGTTTCCTGCAGCTCTTTGAGGGAGATGACCATAAGGTAGAGCAGCTTGACAAGATGGTGACAGAAAAGGCAGGATTTAAGAGAGCTTTCATCATCACAGGGCAGACATATACACGAAAAGTGGATATTGAAGTACTGTCTGTGCTGGCTAGCTTGGGGGCATCAGTGCACA|AGGGCAGATGATTCTGGACCAGATGAAGCCTGAGGAGCCTTCCAGCTCTAAGATAGCAGGATAGGAGACTTCTAAGATTGGAGCTGCAGAAGACTTGCCAGCCCACCAGCACAATGTCAGGAAGCCATACA 17 0.0405298296810681 0.8566228147133801 0.941439745247368 Y Y 3.28399842673177 3.3822971114671296 3.28399842673177 0 0.992390723002869 0.0 Y 0.0 N Y 8802 6827 ENSG00000239900 ENSG00000100359 + - 22 22 40764823 40806122 coding utr5p ADSL SGSM3 40742507 40766595 + + 0.0 40756496 40796700 + - N - - N SA470 1 0.48 1.0 1 0 5 N Y 0.0 0.48 11 1.45755469458329 0.647802086481464 1.45755469458329 0.647802086481464 4 - - 0.9872316019809008 HCT116-unstranded 10.0 293817 TCTTTGCATGGATCTCCAGAACTTGAAGCGTGTCCGAGATGACCTGCGCTTCCGGGGAGTAAAGGGTACCACTGGCACTCAGGCCAGTTTCCTGCAGCTCTTTGAGGGAGATGACCATAAGGTAGAGCAGCTTGACAAGATGGTGACAGAAAAGGCAGGATTTAAGAGAGCTTTCATCATCACAGGGCAGACATATACACGAAAAGTGGATATTGAAGTACTGTCTGTGCTGGCTAGCTTGGGGGCATCAGTGCACA|AGGGCAGATGATTCTGGACCAGATGAAGCCTGAGGAGCCTTCCAGCTCTAAGATAGCAGGATAGGAGACTTCTAAGATTGGAGCTGCAGAAGACTTGCCAGCCCACCAGCACAATGTCAGGTAGAGGCAGGGGCTGGACTTGGAAACGGGGTTTGAAGCTCTCACAGAGGAG 17 0.0207231181056391 0.8566228147133801 0.941439745247368 Y Y 3.28399842673177 3.3822971114671296 3.28399842673177 1 0.994199567333694 0.0 Y 0.0 N Y 8802 6827 ENSG00000239900 ENSG00000100359 + - 22 22 40764823 40806122 coding intron ADSL SGSM3 40742507 40766595 + + 0.0 40756496 40796700 + - N - 0.779124224761368 N SA470 1 0.28915662650602403 1.0 1 0 5 N Y 0.0 0.28915662650602403 7 0.82270864983146 1.03000531750553 1.03000531750553 0.82270864983146 4 - 53.7142857142857 0.990048082771178 HCT116-unstranded 10.0 654761 GCAACAGCGCCGTGGCAAGCCATGTGGCCCCTGCAGGCATTTTGGCTGCAGCAGCTACCGCCCTGACCTGTCTCTTGCCAGGACTGTGGAGCGGATAGGGGGAGTAGGAGTAGAGAAGGGAACAAGGGAGCAAGGGAACAAGGGACATCTGAACATCTAATGTGAGAAGAGAAACATCCTTCT|CTTCTCTGGACGGCCGCCCTGGGGACCGGGTGAATCTCTCCTGCGGAGGAGTCTCTCATCCCATCCGCTGGGTCTGGGCACCCAGCTTCCCGGCCTGCAAGGGCCTGTCCAAAGGACGCCGACCGATCCTGTGGGCCTCTTCGAGCGGGACCCCCACCGTGCCTCCCCTCCAGCCTTT 8 1.0 0.620465637808255 0.202058368703064 Y Y 3.4439989565073 3.29553522864581 3.29553522864581 0 0.0 0.0 Y 0.0 N N 153 767 ENSG00000250641 ENSG00000204420 + - 6 6 31685695 31694491 utr3p coding XXbac-BPG32J3.19 C6orf25 31674681 31686371 + + 0.0 31685666 31691416 + - N - - N SA470 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 14 1.17252177653145 1.11421958874812 1.17252177653145 1.11421958874812 4 - - 0.984655113154098 HCT116-unstranded 10.0 651795 GACGTGACTTATCCAGCCCACAGGGACTGCTACCTGGGAGACCTGTGCAACAGCGCCGTGGCAAGCCATGTGGCCCCTGCAGGCATTTTGGCTGCAGCAGCTACCGCCCTGACCTGTCTCTTGCCAGGACTGTGGAGCGGATAGGGGGAGTAGGAGTAGAGAAGGGAACAAGGGAGCAAGGGAACAAGGGACATCTGAACATCTAATGTGAGAAGAGAAACATCCTTCT|GGTCTGGCTGGCTCTGTCGCCCAGGCTGGAGTGCAATGGCCTGATCACAGTTCACTGCAACCTCGACCTCCTGAGCTCAAGCGATCCTCCCTCCTCAGCCTCCTAAGTAGCTGGGATTACAGGCGCACCTGAAAAGTTAAGCAGGCCAAAGCATTTGTGT 4 1.0 0.954145849731894 0.0422769369817275 Y Y 3.4439989565073 3.3127318929492486 3.3127318929492486 0 0.0 0.0 Y 0.0 N N 153 767 ENSG00000250641 ENSG00000204420 + - 6 6 31685695 31694491 utr3p intron XXbac-BPG32J3.19 C6orf25 31674681 31686371 + + 0.0 31685666 31690781 + - N - 0.0241564742404451 N SA470 4 0.793103448275862 1.85714285714286 1 3 2 N Y 0.0 0.793103448275862 7 1.24378000604441 0.939313025398123 1.24378000604441 0.939313025398123 4 - 0 0.901000209551226 HCT116-unstranded 10.0 965421 ATACTTGAAATTATAATCTCTGCTATGCCTGTTCCCAAACGCAGAGCTCTTAATGATGTGCGTGTATGAGCATCGCAGTCCTCGGAAGGAGACAGACCCACCTTTGACGCTGGAAGCCACAGAAGACATGTTGATAATATTGCCAGATTTCTGAGCAAGCATCTG|GACAAAGGCCTAAACTTGAGTTATCAAAATAGCGAACTGGATGAGGTGATGGTAAAGACTTTGATCGGCTATCAAAAAAACAAGATTTTGGTGATTCCTTTGGCACAGGATCTTGTAAATTCCGTTCCTTGCATTGAGAGGGTGTAATTTGTTTCTTTTTAGAAGCTGTTCCAGTCACTTTAGGAGAC 12 0.634075373213232 0.510397175916835 0.13302146579770402 Y Y 3.55657227767558 3.6638564588150495 3.55657227767558 0 0.0 0.0 Y 0.0 N Y 487 6241 ENSG00000164039 ENSG00000138778 - + 4 4 104021040 104119566 intron coding BDH2 CENPE 104000592 104026963 - - 0.0 104007697 104029960 + - N 1.49132513396737 1.10051371610086 N SA470 1 0.0 1.0 1 0 2 N Y 0.0 0.0 17 1.03648333837034 1.20491188085552 1.20491188085552 1.03648333837034 4 6.94117647058824 12.1176470588235 0.9814788668870608 HCT116-unstranded 10.0 2677 ATGAAGGACTACACCAAAGCCATGGATGTGTACCAGAAGGCGCTAGACCTGGACTCCAGCTGTAAGGAGGCGGCAGACGGCTACCAGCGCTGTATGATGGCGCAGTACAACCGGCACGACAGCCCCGAAGATGTGAAGCGACGAGCCATGGCCGACCCTGAGGTGCAGCAGATCATGAGTGACCCAGCCATGCGCCTTATCCTGGAACAGATGCAGAAGGACCCCCAGGCACTCAGCGA|CCTCTGCCCAGCCTGCCTCTCGCCATGCGGCAGCCTGAACTTTCCACCTCCCCGGAGAGGCTTTGGCTGGTTTGTGATGTTGGCATCTGAGCTGTGGGCCAGGATCGGAACTACTTCCTGGCCTGGGTACGAAGCCATGGCCAGAGTGGGCAGCTGCCCCTGAGGGTCTGGGAGTGAGCTGTGGGCTGGCATTGAGCACGGTGGT 42 1.0 0.8853542132049219 0.405465473576856 Y Y 3.4284977093830498 3.29908909870209 3.29908909870209 3 0.0 0.0022471910112359396 Y 0.0022471910112359396 N N 29998 1161 ENSG00000168439 ENSG00000149781 + - 11 11 63972015 63991354 coding intron STIP1 FERMT3 63952744 63974150 + + 0.0 63971094 63974342 + - N - 0.0172431912672213 N SA470 2 0.0240384615384615 1.5833333333333302 1 21 2 N Y 0.0 0.0240384615384615 36 1.58063709101477 1.34742833988145 1.58063709101477 1.34742833988145 4 - 0.0555555555555556 0.958964636170855 HCT116-unstranded 10.0 5923 AGAAGGCGCTAGACCTGGACTCCAGCTGTAAGGAGGCGGCAGACGGCTACCAGCGCTGTATGATGGCGCAGTACAACCGGCACGACAGCCCCGAAGATGTGAAGCGACGAGCCATGGCCGACCCTGAGGTGCAGCAGATCATGAGTGACCCAGCCATGCGCCTTATCCTGGAACAGATGCAGAAGGACCCCCAGGCACTCAGCGAA|TCGCAAGCAGGACTGGTCAGACCATGCTATTTGGTGGGAACAGAAGAGGCAGTGGCTGCTGCAGACCCACTGGACACTGGACAAGTACGGGATCCTGGCCGACGCACGCCTCTTCTTTGGGCCCCAGCACCGGCCCGTCATCCTTCGGTTGCCCAACCGCCGCGCACTGCGCCTCCGTGCCAGCTTCTCCCAG 8 1.0 0.30048495382532203 0.575617589419135 Y Y 3.40914161958398 3.7255184510618697 3.40914161958398 0 0.0 0.0 Y 0.0 N Y 29998 1161 ENSG00000168439 ENSG00000149781 + - 11 11 63972015 63991354 coding coding STIP1 FERMT3 63952744 63974150 + + 0.0 63971094 63978083 + - N - - N SA470 2 0.0 1.81818181818182 1 9 2 N Y 0.0 0.0 11 1.30208219382774 1.12069760961293 1.30208219382774 1.12069760961293 4 - - 0.918590709510134 HCT116-unstranded 10.0 1033838 CGGCGCGCTACGTGCTGCCCGACGAGGCGGCGCGCGCGCGGCTCCTGCAGGAGGGCGGCGGCGGCGTCGCGGCCGTGGTGGTGCTGGACCAGGGCAGCCGCCACTGGCAGAAGCTGCGAGAGGAGAGCGCCGCGCGTGTCGTCCTCACCTCGCTACTCGCTTGCCTACCCGCCGGCCCGCGGGTCTACTTCCTCAAAGG|AAGGTACTGGTCCTCGTGTTATTTCTGCTTTTGTGGAGATTATTTTTGATAATTCAGACAACCGGTTACCAATCGATAAAGAGGAAGTTTCACT 8 0.0021755512558967 0.333110021821306 0.8237201290005091 N Y 3.3400005565891804 3.5597647729410897 3.3400005565891804 4 0.0 0.0 Y 0.0 N Y 3245 6252 ENSG00000138166 ENSG00000108055 + - 10 10 112271302 112364394 coding coding DUSP5 SMC3 112257596 112327449 + + 0.0 112258258 112337179 + - N - - N SA470 1 0.0 1.0 1 0 3 N N 0.0 0.0 23 1.15956573480182 1.20491188085552 1.20491188085552 1.15956573480182 4 - - 0.9561063075070472 HCT116-unstranded 10.0 1037362 GTCTGAATTATCAAAAATAATCTCCACAAAAGCAGAAATAACACGAGGACCAGTACCTTCATGCAATAAAGCCAACCGCTGTTCTGGACGAAGATGACTAAACTCATCACTGAGAACAAACTGAATTGC|AATGAAGTCTATTGCTTCTTGAAAGTGGGAGCTAATGTCAGCCGTGTGGCTGTCTTCCACAGGGATCCATTTGTAGTGTAGGTGGGTCGCGCAGGCCTCGGAGGTCCGTCGGGAGACATTCAGCAGGGCTGTGATGTGCAGGTTGGCGAGGAACTCGCACTTGGATGCATGGTAGGCACTTCCAAGGTAGAGGAAGGGAAGGATTTCAACTGGGCCACCCTG 6 0.859822147231977 0.7665270678599309 0.7894727336198059 N Y 3.26464233693271 3.472331195140661 3.26464233693271 1 0.0 0.0 Y 0.0 N Y 6252 3245 ENSG00000108055 ENSG00000138166 - + 10 10 112364394 112271302 coding coding SMC3 DUSP5 112327449 112257596 + + 0.0 112335094 112266912 - + N - 1.16423751191029 N SA470 1 0.0 1.0 1 0 3 N N 0.0 0.0 6 1.01057125491108 1.19843385999071 1.19843385999071 1.01057125491108 4 - 81.3333333333333 0.9932609216694972 HCT116-unstranded 10.0 1033836 GGGGCGGCGCGGTGTCGGCGCGCTACGTGCTGCCCGACGAGGCGGCGCGCGCGCGGCTCCTGCAGGAGGGCGGCGGCGGCGTCGCGGCCGTGGTGGTGCTGGACCAGGGCAGCCGCCACTGGCAGAAGCTGCGAGAGGAGAGCGCCGCGCGTGTCGTCCTCACCTCGCTACTCGCTTGCCTACCCGCCGGCCCGCGGGTCTACTTCCTCAAAGG|AAGGTACTGGTCCTCGTGTTATTTCTGCTTTTGTGGAGATTATTTTTGATAATTCAGACAACCGGTTACCAATCGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCAGT 9 1.0 0.28546172701752004 0.7920125877900301 N Y 3.3400005565891804 3.5597647729410897 3.3400005565891804 4 0.0 0.0 Y 0.0 N Y 3245 6252 ENSG00000138166 ENSG00000108055 + - 10 10 112271302 112364394 coding coding DUSP5 SMC3 112257596 112327449 + + 0.0 112258258 112337179 + - N - - N SA470 1 0.05 1.0 1 0 3 N N 0.05 0.0 5 0.90692292107405 0.7190603159944251 0.90692292107405 0.7190603159944251 4 - - 0.9832354976317208 HCT116-unstranded 10.0 1033665 TAAGAAATACTGATCCTTTTTGGCACCAATAACTCTTCGAAGTGAAACTTCCTCTTTATCGATTGGTAACCGGTTGTCTGAATTATCAAAAATAATCTCCACAAAAGCAGAAATAACACGAGGACCAGTACCTTC|CTGGTCATAAGCTGGCCTGTAGCTGACATTTACCACTGGTTTTCCACACTGGCTGATGAGGGCTCTCTCACTCTCAATCTTCTCTTGTGAAATGGGTTTTACATCCACGCAACACTCAGGATATTCCGAGTAGAAAGTCTCATATCCCCCTACAAAAACAAACAAAAAGG 5 0.0329416653144812 0.7024990998860561 0.41217510850564704 N Y 3.54040868314203 3.6691455988438704 3.54040868314203 0 0.0 0.0 Y 0.0 N Y 6252 3245 ENSG00000108055 ENSG00000138166 - + 10 10 112364394 112271302 coding coding SMC3 DUSP5 112327449 112257596 + + 0.0 112337179 112262627 - + N - 0.91931156869798 N SA470 1 0.0 1.0 1 0 3 N N 0.0 0.0 5 1.17252177653145 0.72553833685924 1.17252177653145 0.72553833685924 4 - 132.6 0.989329078699684 HCT116-unstranded 10.0 6208 AAACATATCAAGGAGAATGACTATTATACTCCAACTGGGGAGTTCCGTGTGGACCGTGAAGGTTCTCCAGTGCTGCTCAACTGCCTCATGTACAAGATGTGTTACTATCGCTTTGGACAGGTTTACACAGAAGCCAAGCGTCCTCCAGGCTTTGACCGTGTCCGAAATGCTGAGATTGGGAATAAAGACTTTGAGCTTGATGTCCTGGAGGAAGCATATACCACAGAACATTGGCTGGTCAGGATATACAAG|AGCCAGACATAGGCATGCCTGAACCAGATGCTCAGAGATTCTTCCATCAACTCATGGCAGGGGTGGTTTATCTGCATGGTATTGGAATAACTCACAGGGATATTAAACCAGAAAATCTTCTGTTGGATGAAAGGGAT 5 0.134761710926113 0.574977899399499 0.27506412780261896 Y Y 3.64759957832565 3.53568860456667 3.53568860456667 0 0.0 0.0 Y 0.0 N Y 17158 5121 ENSG00000134910 ENSG00000149554 + - 11 11 125495110 125546150 coding coding STT3A CHEK1 125461607 125495036 + + 0.0 125490021 125499127 + - N - - N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 5 0.8486207332907181 0.699626253399981 0.8486207332907181 0.699626253399981 4 - - 0.922731132209504 HCT116-unstranded 10.0 6084 GCAGCTCTATTACATGGGCCGGTGGAAACTGGACTCGGGGATCTTCCGCCGCATCCTCCACGTGCTCTACACAGACTGCATCCGGCAGTGCAGCGGGCCGCTCTACGTGGACCGCATGGTGCTGCTGGTCATGGGCAACGTCATCAACTGGTCGCT|CTTTCCCCAGACATGGCCAACAAGGGTCCTTCCTATGGCATGAGCCGCGAAGTGCAGTCCAAAATCGAGAAGAAGTATGACGAGGAGCTGGAGGAGCGGCTGGTGGAGTGGATCATAGTGCAGTGTGGCCCTGAT 4 0.0205749566179601 1.0 0.87764040851875 Y Y 3.31629511057535 3.5587317031712 3.31629511057535 0 0.99261796042618 0.0 Y 0.0 N Y 5617 1235 ENSG00000149577 ENSG00000149591 + - 11 11 117068160 117075498 coding utr5p SIDT2 TAGLN 117049449 117070037 + + 0.0 117063582 117073718 + - N - - N SA470 1 0.0 1.0 1 0 2 N Y 0.0 0.0 7 1.29560417296293 0.796796566372201 1.29560417296293 0.796796566372201 4 - - 0.990048082771178 HCT116-unstranded CGHSA0410 10.0 6083 GTGGTCTGGGGCTTCGCGCTCTTCTTCTTCTTCCAGGGACTCAGCACCTGGCAGAAAACCCCTGCAGAGTCGAGGGAGCACAACCGGGACTGCATCCTCCTCGACTTCTTTGACGACCACGACATCTGGCACTTCCTCTCCTCCATCGCCATGTTCGGGTCCTTCCTG|CTTTCCCCAGACATGGCCAACAAGGGTCCTTCCTATGGCATGAGCCGCGAAGTGCAGTCCAAAATCGAGAAGAAGTATGACGAGGAGCTGGAGGAGCGGCTGGTGGAGTGGATCATAGTGCAGTGTGGCCCTGATGTGGGCCGCCCAGACCGTGGGCGCTTGGGCTTCCAG 5 0.800422728523741 0.3416989573980481 0.677592896045438 Y Y 3.23887075137909 3.5587317031712 3.23887075137909 0 0.99406512605042 0.0 Y 0.0 N Y 5617 1235 ENSG00000149577 ENSG00000149591 + - 11 11 117068160 117075498 coding utr5p SIDT2 TAGLN 117049449 117070037 + + 0.0 117066631 117073718 + - N - - N SA470 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 9 0.8745328167499771 1.11421958874812 1.11421958874812 0.8745328167499771 4 - - 0.9879419795883492 HCT116-unstranded CGHSA0410 10.0 670754 GAACATATCTTTTTTTCAGAGCCTCTGTGTGCTGGGTTACTGTATACTTCCCTTGACAGTAGCAATGCTGATTTGCCGGCTGGTACTTTTGGCTGATCCAGGACCTGTAAACTTCATGGTTCGGCTTTTTGTGGTGATTGTGATGTTTGCCTGGTCTATAGTT|GTGCTTCCCATTGCTGCAGGTGAAGAAGAACGCTGAAGCCGAGGCCAAAAGAGCATGTGAGTGGCTTCAAGCAACAGGATTCCCTCAGTATGTGCAGCTTTTTGAAGAAGGTTCGTTTCCCCTGGATATTGGCTCTGTGAAGAAAAACCACGGTTTTCTGGACGAGGACTCTTTGGGGGCCC 7 1.0 0.273017778448559 0.6296469318162221 N Y 3.11910998451155 3.612079893993029 3.11910998451155 0 0.0 0.0 Y 0.0 N Y 4785 838 ENSG00000181704 ENSG00000130052 + - X X 67757127 67945684 coding coding YIPF6 STARD8 67718165 67867508 + + 0.0 67742759 67885341 + - N - - N SA470 1 0.0 1.0 1 0 1 N N 0.0 0.0 5 1.0235272966407098 1.19843385999071 1.19843385999071 1.0235272966407098 4 - - 0.963010096646646 HCT116-unstranded 10.0 1037365 GCCAGATCCTGAAAGACATCACGGTGGAGGACATGAACGAGCTAGAGCGACAGTTTCTTGAATTGCTGCAGTTCAACATCAATGTTCCTTCCAGTGTCTATGCCAAGTATTATTTTGATCTTCGTTCTCTGGCAGAAGCGAACAACCTGAGCTTTCCCTTGGAGCCCCTGAGCAGGGAGAGGGCTCACAAGCTTG|AGGAAAGCTCTGGTTCGTCCTCACGATGCTGCTGCGGATGCTGGTGATTGTCTTGGCGGGGCGACCCGTCTACCAGGACGAGCAGGAGAGGTTTGTCTGCAACACGCTGCAGCCGGGATGCGCCAATGTTTGCTACGACGTCTTCTCCCCCGTGTCTCACCTGCGGTTCTGGCTGATCCAGGGCGTGTGCGTCCTCCTCCC 16 0.794859481887693 0.57800931458917 0.3589776336462411 Y Y 3.1912757089025097 3.62464976567696 3.1912757089025097 4 0.0 0.0 Y 0.0 N Y 4326 357 ENSG00000108100 ENSG00000177291 + - 10 10 35860852 35897863 coding intron CCNY GJD4 35535953 35894338 + + 0.0 35855113 35896506 + - N - 0.0697754556300654 N SA470 1 0.0 1.0 1 0 3 N Y 0.0 0.0 14 1.30208219382774 1.25025802690923 1.30208219382774 1.25025802690923 4 - 0.642857142857143 0.980819506842528 HCT116-unstranded 10.0 381273 ATGAAACCCTGGATCATCTCATCAAAGGAAGGCTTAAGGAAAACCTATATCCTTATTTAGGCCCCAGCACACTCAGAGACAGACCTCAGGATATCATTGTGTTTGTAATTGGAGGAGCCACCTATGAAGAGGCTCTAACAGTTTATAACCTGAACCGCACCACTCCTGGAGTGAGGATTGTCCTGGGAGGCACCACAGTGCACAACACGAAAA|GGCTTCCACCTCTACCTCGGATGGGATGCTGACCTTGGACTTGATCCAAGAGGAAGACCCTTCCCCTGAGGAACCAACCTCTTGTGCTGAGAGCTTTCGGGTTGACCTGGACAAGTCTGTGGCCCAGCTGGCAGGGAGCCGGCGGAGAGCGGACTCAGACCGCATCCAGCCCTCCGCAGACCGGGCAAGCAGTCTCTCCCGAC 7 0.362133335859389 0.535189343800857 0.275704318914683 Y Y 3.55553920790569 3.45078517462244 3.45078517462244 0 0.0 0.0 Y 0.0 N Y 1749 195 ENSG00000136631 ENSG00000023902 + - 1 1 150117505 150132260 coding coding VPS45 PLEKHO1 150039369 150121373 + + 0.0 150082742 150131014 + - N - - N SA470 1 0.0 1.0 1 0 2 N Y 0.0 0.0 6 1.15956573480182 1.1077415678833 1.15956573480182 1.1077415678833 4 - - 0.978333827798312 HCT116-unstranded 10.0 382405 TTCATTATTGCAGACCTCAGGATATCATTGTGTTTGTAATTGGAGGAGCCACCTATGAAGAGGCTCTAACAGTTTATAACCTGAACCGCACCACTCCTGGAGTGAGGATTGTCCTGGGAGGCACCACAGTGCACAACACGAAAAG|GGACCTCAGGATGGAAACCAGCAGCCTGCACCGCCCGAGAAGGTCGGCTGGGTCCGGAAATTCTGCGGGAAAGGGATTTTCAGGGAGATTTGGAAAAACCGCTATGTGGTGCTGAAAGGGGACCAGCTCTACATCTCTGAGAAGGAGGTAAAAGATGAGAAAAATATT 6 0.644964225454692 0.702644788890713 0.628468152471843 Y Y 3.55553920790569 3.40591861909494 3.40591861909494 0 0.0 0.0 Y 0.00318471337579607 N Y 1749 195 ENSG00000136631 ENSG00000023902 + - 1 1 150117505 150132260 coding coding VPS45 PLEKHO1 150039369 150121373 + + 0.0 150082742 150123102 + - N - - N SA470 1 0.0 1.0 1 0 2 N Y 0.0 0.0 6 0.829186670696274 0.7514504203184991 0.829186670696274 0.7514504203184991 4 - - 0.994848257334812 HCT116-unstranded 10.0 368302 TTCTGGCTGAGGACGAGGAGATGAACCGAATGCATGAAAGCATGAAACTGTTTGACAGCATTTGTAATAACAAATGGTTTACAGAAACTTCAATCATTCTCTTCCTTAACAAGAAAGACCTTTTTGAGGAAAAAATAAAGAGGAGTCCGTTAACTATCTGTTATCCAGAATACACAG|TGCCAGGGCAGGGGCCCTTGGAGTGACTTGGCTGGGGTCTGTGGCCCGATCCCCCTGCCGTCCCTCAGGACCCGGGCTTTCTGCTGTACAGACTTCTCGTGGGCAGCCTCCCCTCGGAACTCGGGCATCATGGCCTCAGGCCCAGCCACCAT 12 0.589620287746426 0.300438498605568 0.742226930699649 N Y 3.77530342425761 3.1531555186968 3.1531555186968 0 0.0 0.0 Y 0.0 N Y 10477 5399 ENSG00000065135 ENSG00000116337 + - 1 1 110136975 110174673 coding utr5p GNAI3 AMPD2 110091233 110158726 + + 0.0 110129504 110162762 + - N - - N SA470 1 0.0 1.0 1 0 3 N N 0.0 0.0 10 0.9781811505870108 0.971703129722196 0.9781811505870108 0.971703129722196 4 - - 0.983121965202944 HCT116-unstranded 10.0 796379 CAGTCCTGCACAAAGTTCTGAAACAGCTGGAAGAACTGCTGAGTGACATGAAAGCTGATGTGACTCGACTCCCAGCTACCATTGCCCGAATTCCCCCAGTTGCTGTGAGGTTACAGATGTCAGAGCGTAACATTCTCAGCCGCCTGGCAAACCGGGCACCCGAACCTACCCCACAGCA|GTACCATGGGGCGCAAGTTGGACCCTACGAAGGAGAAGCGGGGGCCAGGCCGAAAGGCCCGGAAGCAGAAGGGTGCCGAGACAGAACTCGTCAGATTCTTGCCTGCAGTAAGTGACGAAAATTCCAAGAGGCTGTCTAGTCGTGCTCGAAAGAGGGCAGCCAAGAGGAGATTGGGCTCT 3 0.9141178296031428 0.769004940814349 0.239001901806682 Y Y 3.07060985334107 3.65488030998075 3.07060985334107 0 0.0 0.0 Y 0.0 N Y 28863 24422 ENSG00000111642 ENSG00000111641 + - 12 12 6716642 6677857 coding utr5p CHD4 NOP2 6679249 6666029 - - 0.0 6680035 6677088 - + N - - N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 12 1.16604375566664 0.997615213181455 1.16604375566664 0.997615213181455 4 - - 0.975403568174282 HCT116-unstranded 10.0 1135176 GGTCGATAAGTCTTCCGAACCTCTGAGCTCCGGACAGGCTCTGGAAGTGCTTTAGCTTCTTTCCTACACAGCGGCACCCGCCGGCTTCCAGGCTTCACACTTGTGAACTCTTCGGCTGCCTCTGACAGTTTATGTAATCCTGGGATGTCATTCAGTTCCCTCCTCTGTGAACCCTGATCACCTCCCCACCTCTCTTCCTCCGAGCCAGCCCCCTTCCTTTCC|GTAGCGGGCCCAGAGCTTGGGCTGCACATCGGAGCATTCGCGGATTAGGATGGGTAGGTCGGGATTCGCCTTCTTCAGCTCCACGTAGCGTTTCTCAATGAAGTCCCTGCGGGGCCGGAGAGAGCGCCGCGCGTGCTGTGGGCGGGGGCTTCCCTCAACTTCAGGGAGGTCGA 51 0.890095276616588 0.9241263042843272 0.456679247186786 Y Y 2.71419614744645 3.51935717616377 2.71419614744645 0 0.994234250014597 0.0 Y 0.0 N Y 1537 4831 ENSG00000170458 ENSG00000131495 - + 5 5 140013286 140027370 utr5p coding CD14 NDUFA2 140011313 140018325 - - 0.0 140012877 140026841 + - N - 0.258672854785137 N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 40 1.39925250679996 1.15308771393701 1.39925250679996 1.15308771393701 4 - 72.85 0.983364709700248 HCT116-unstranded 10.0 1136037 GAAGACCTGGAATTGGCGACTTCGATATTAACAAGGATGGCGGCGGCCGCAGCAAGTCGAGGAGTCGGGGCAAAGCTGGGCCTGCGTGAGATTCGCATCCACTTATGTCAGCGCTCGCCCGGCAGCCAGGGCGTCAGGGACTTCATTGAGAAACGCTACGTGGAGCTGAAGAAGGCGAATCCCGACCTACCCATCCTAATCCGCGAATGCTCCGATGTGCAGCCCAAGCTCTGGGCCCGCTAC|GGAAAGGAAGGGGGCTGGCTCGGAGGAAGAGAGGTGGGGAGGTGATCAGGGTTCACAGAGGAGGGAACTGAATGACATCCCAGGATTACATAAACTGTCAGAGGCAGCCGAAGAGTTCACAAGTGTGAAGCCTGGAAGCCGGCGGGTGCCGCTGTGTAGGAAAGAAGCTAAAGCACTTCCAGAGCCTGTCCGGAGCTCAGAGGT 51 0.210739352193902 0.9241263042843272 0.456679247186786 Y Y 3.51935717616377 2.71419614744645 2.71419614744645 1 0.9951089810924372 0.0 Y 0.0 N Y 4831 1537 ENSG00000131495 ENSG00000170458 + - 5 5 140027370 140013286 coding utr5p NDUFA2 CD14 140018325 140011313 - - 0.0 140026841 140012877 - + N - - N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 7 1.17899979739626 0.932835004533309 1.17899979739626 0.932835004533309 4 - - 0.9305572357946952 HCT116-unstranded 10.0 1134935 GGCGACTTCGATATTAACAAGGATGGCGGCGGCCGCAGCAAGTCGAGGAGTCGGGGCAAAGCTGGGCCTGCGTGAGATTCGCATCCACTTATGTCAGCGCTCGCCCGGCAGCCAGGGCGTCAGGGACTTCATTGAGAAACGCTACGTGGAGCTGAAGAAGGCGAATCCCGACCTACCCATCCTAATCCGCGAATGCTCCGATGTGCAGCCCAAGCTCTGGGCCCGCTACG|GAGCGCGCGTCCTGCTTGTTGCTGCTGCTGCTGCCGCTGGTGCACGTCTCTGCGACCACGCCAGAACCTTGTGAGCTGGACGATGAAGATTTCCGCTGCGTCTGCAACTTCTCCGAACCTCAGCCCGACTGGTCCGAAGCCTTCCAGTGT 8 1.0 0.535926147774514 0.202058368703064 Y Y 3.51935717616377 2.9553825931372004 2.9553825931372004 0 0.993350831146107 0.0 Y 0.0 N Y 4831 1537 ENSG00000131495 ENSG00000170458 + - 5 5 140027370 140013286 coding coding NDUFA2 CD14 140018325 140011313 - - 0.0 140026841 140012565 - + N - 3.36513100154282 N SA470 1 0.0 1.0 1 0 2 N Y 0.0 0.0 11 1.502900840637 0.945791046262938 1.502900840637 0.945791046262938 4 - 21.0909090909091 0.9764099760440592 HCT116-unstranded 10.0 791717 GCCGGGAAGCGACGGGATGGCTGCGGCCGGCGGCGGCGGCGGCGGGGCGGCGGCGGCGGGCCGAGCCTACTCGTTCAAGGTGGTGCTGCTGGGGGAAGGCTGCGTGGGGAAGACGTCGCTGGTGCTGCGCTACTGCGAGAACAAGTTTAACGACAAGCACATCACCACTCTGCAGGCATCATTCTTAACAAAGAAGTTAAATATTGGTGGGAAAAGAGTAAACCTTGCCATATGG|ATTATATATGAACAAGAAGGAGTATATATTCACTCATCTTGTGGAAAGACCAATGACCAAGACGGCTTGATTTCAGGAATATTACGTGTTTTAGAAAAGGATGCCGAAGTAATAGTGGACTGGAGACCATTGGATGATGCATTAGATTCCTCTAGTATTCTCTATGCTAGAAAGGACTCCAGTTCAGTTGTAGAATGGACTCAGGCCCCAAAAGAAAGAG 23 0.620430276076236 0.44982105153445706 0.7824968643457549 N Y 3.40319013214585 3.438245808162049 3.40319013214585 0 0.0 0.0 Y 0.0 N Y 4728 2402 ENSG00000080371 ENSG00000121749 + - 12 12 72184699 72320629 coding coding RAB21 TBC1D15 72148654 72233487 + + 0.0 72163639 72265850 + - N - - N SA470 1 0.16494845360824698 1.0 1 0 2 Y N 0.16494845360824698 0.0 20 1.25673604777404 1.25673604777404 1.25673604777404 1.25673604777404 4 - - 0.985782421210455 HCT116-unstranded 10.0 652802 ACTCTACTTCTTGGCTTATGAGGATAAAAATGACATCCCTAAAGAAAAAGATGAAAAAATAGCCTGGGCGCTCTCCAGAAAAGCTACACTTGAGCTGACACACAATTGGGGCACTGAAGATGATGAGACCCAGAGTTACCACAATGGCAATTCAGACCCTCGAGGATTC|GAACAACGACTATCGTCTATTCCACAAGATGAGTAACAGCCACCCTCTTCGCCCCTTTACTGCAGTGGGGGAAATTGATCATGTGCACATTTTGTCTGAACATATTGGTGCCTTGTTGATTGGGGAAGAATATGGCGACGTCACATTCGTGGTGGAAAAGAAACGTTTTCCTGCCCACAGGGTAATTTTAGCAGCCAGGTGCCAATATTTTCGAGCATTATTAT 10 0.713091834716075 0.873502625922547 0.242965023756193 Y Y 3.7297745213208 3.7308075910906897 3.7297745213208 0 0.0 0.0 Y 0.0 N Y 31757 3209 ENSG00000124767 ENSG00000183826 + - 6 6 38670917 38607924 coding utr5p GLO1 BTBD9 38643719 38136227 - - 0.0 38650584 38565897 - + N - - N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 11 1.0235272966407098 1.43164261112404 1.43164261112404 1.0235272966407098 4 - - 0.957811958162314 HCT116-unstranded 10.0 616075 GCGCCAAGGAGCAGCGTGAGCAATGCGTCCCTGCGTAGGCGCAGCCTCCTCCTCATCTCCGCGCGGCCTGCGCCCTCCCTCCCCTGTAAGGGTCGCAGTCGGCAGCAGGGGGCAGCGAGCCCCGCCCTCCCCAGCTGAGGGGGCGGGAGGCCACGCCCCGGGGGGGGCTCCAGCGACCGACGGTTGAGCCCCTTGCGTTGTTCTCCTCCTCCCGGCCGTGTCGCACCGCCGGGACCGGCAGCCTG|GCCGCCTCGGCGGGGCCTGGGTTCCCACGCCCGCCAGGCTCCGCTCTACTCCGCCGCTTCCGGGTGTGCGCGGAGGCGCTGGGGCGGTGCCCTAGCCCGAGCC 34 0.9418647834338578 0.646390291546636 0.722324426507282 Y Y 3.2442133245704103 3.02188845513875 3.02188845513875 0 0.0 0.0 Y 0.0 N Y 1401 453 ENSG00000237172 ENSG00000102871 - + 16 16 67185117 67194201 intron utr5p B3GNT9 TRADD 67182008 67188083 - - 0.0 67184574 67193741 + - N 13.5615015693549 6.05731512206397 N SA470 1 0.0 1.0 1 0 2 N Y 0.0 0.0 18 0.7773625037777572 0.453461460537025 0.7773625037777572 0.453461460537025 4 0.388888888888889 1.05555555555556 0.982770448525014 HCT116-unstranded 10.0 221421 GCATCCCTACCATGGCTCGGGCCGTCGTCGTCAATGCTGCCCAGCTCGCCTCCTACTCCCAATCCAAGCAGTTCTTACTGGACTCAGGCTACTTCTCTGACAACATCTTGTGCCACTTCTGTGCCAGCATGATCAGCGGTCTTGTCACCACTGCTGCCTCCATGCCTGTGGACATTGCCAAGACCCGAATCCAGAACATGCGGATGATTGATGGGAAGCCGGAATACAAGAACGGGCTGG|CAGGGGTGTGGGGAAGAACGAGGAACTGCGTCTTTATCACCATCTCTTCAACAACTATGACCCAGGAAGCCGGCCAGTGCGGGAGCCTGAGGATACTGTCACCATCAGCCTCAAGGTCACCCTGACGAATCTCATCTCACTGAATGAAAAAGAGGAGACTCTCACCAC 14 0.7369837176428721 0.4778694541139861 0.5418483954795039 N Y 3.4278353619737403 3.56129235625094 3.4278353619737403 0 0.0 0.0 Y 0.00244498777506108 N Y 4849 253 ENSG00000108528 ENSG00000108556 + - 17 17 4843546 4806369 coding coding SLC25A11 CHRNE 4840425 4801069 - - 0.0 4841318 4806058 - + N - - N SA470 1 0.0 1.0 1 0 1 N N 0.0 0.0 14 1.5482469866907 0.932835004533309 1.5482469866907 0.932835004533309 4 - - 0.969114190179688 HCT116-unstranded 10.0 1037007 GGAATTCATACCTAGTGGCTGTGTAGAGGCCTCCATCAATGATGAGGCCTGTGAAGCCACGGGCTGGGTCATAAGGACACTTCTCCTTCCCCTCCTCGAAGCTGGTTGGCAAGGTGAAGGCCTCAGCATCAATGGCTGCACAGAGGGGCTGGAAGGCGTGAGTCCCACATGCATAGAGGTGGGTAGAATTGAGCCGCTGCAGGAACCGCACATGGTTAAAGCACTCCGT|TGTAGCAGGGATCCTAGGTGAAGGGGGTGGGTATGAATTCCTGAAACTTGAGCAGGTTCCCTGAAGCAAGAGAACTCTGGCCTAGTCAAGTTGTCCTGCTTACTGTTCAATGTGGCAGCATTTCTGTTCCTGCTTTGCCATCTCCATCTCTGGTTTGCCCAGCACTTTCCCTTTAGGTGGTGTGGTCTTTATTTTGG 6 0.5048444167415611 0.7343582380733641 0.5 Y Y 3.78105657260285 3.3619172994679904 3.3619172994679904 2 0.0 0.00740617458600334 Y 0.00740617458600334 N N 2892 1618 ENSG00000095539 ENSG00000119906 - + 10 10 102745628 102724893 coding downstream SEMA4G FAM178A 102729275 102672720 + + 0.0 102737389 102726570 - + N - - N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 6 1.0235272966407098 0.984659171451826 1.0235272966407098 0.984659171451826 4 - - 0.974304511345354 HCT116-unstranded 10.0 1037378 GAGACTTCTCTGTGTACAGTGCCAGCACCCACAAGTTCTTGTACTATGATGAGAAGAAGATGGCCAATTTCCAGAACTTTAAGCCGAGGTCCAACAGGGAAGAAATGAAATTTCATGAGTTCGTTGAGAAACTGCAGGATATACAGCAGCGAGGAGGGGAAGAG|AGGTTCCCCTTATTATTATAGTGCCGCCCCCCGGGGCTCCGCCCCTGCCGCTGCTGCCGCTGCCTATGACCGCCACTAGTTACCGCGGGGACCACATCAAGCTTCAGGCCGACAGCTTCGGCCTCCACATCGTCCCCGTCTGACCCCACCCCGGAGGGAGGGAGGACCGACGCGACGCGATGCCTCCCGGCCACCGCCCCAGCCTC 10 1.0 0.970117693288369 0.787081414144636 Y Y 3.1897082727993102 3.20699822305859 3.1897082727993102 0 0.0 0.0 Y 0.0 N Y 477 646 ENSG00000166135 ENSG00000075891 + - 10 10 102309763 102589698 coding intron HIF1AN PAX2 102288829 102495360 + + 0.0 102296418 102587300 + - N - 0.202196991223994 N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 6 0.796796566372201 1.27617011036848 1.27617011036848 0.796796566372201 4 - 2.66666666666667 0.992455626252426 HCT116-unstranded 10.0 1136446 GTTCCTGGTTATCCTCTTCTGCTGTTCTGGAAAGAAACAGACCAGTGGTATGGAGTATAAGAAAACTGATGCACCTCAACCGGATGTGAAGGAAGAGGAAGAAGAGAAGGAAGAGGAAAAGGACAAGGGAGATGAGGAGGAGGAAGGAGAAGAGAAACTTG|CATCTTCATGATACAGTTAAGAGGAATCTTGACAGCGCCACTTCCCCTCAGAATGGCGATCAACAGAATGGCTACGGGGACCTCTTTCCTGGGCATAAGAAGACTCGCCGGGAGGCCCCTCTGGGAGTTGCCATCTCTTCCAATGGACTGCCTCCAGCCTCCCCCCTCGGTCAGTCT 20 0.903498890885874 0.885967338538332 0.578418478251618 Y Y 2.7017222770634706 3.82080182197087 2.7017222770634706 0 0.0 0.0 Y 0.0 N Y 81139 11945 ENSG00000127022 ENSG00000161021 + - 5 5 179157926 179223512 coding coding CANX MAML1 179105629 179159851 + + 0.0 179151784 179192327 + - N - - N SA470 1 0.4220779220779221 1.0 1 0 4 N Y 0.4220779220779221 0.0 11 0.997615213181455 1.17252177653145 1.17252177653145 0.997615213181455 4 - - 0.985174585380296 HCT116-unstranded 10.0 1136277 GCCCCAGAGAGTGCTTCCCACTGGACTGCAGGGCGTCGGCTCCAGAAGGCTTGTCAGACTGACCGAGGGGGGAGGCTGGAGGCAGTCCATTGGAAGAGATGGCAACTCCCAGAGGGGCCTCCCGGCGAGTCTTCTTATGCCCAGGAAAGAGGTCCCCGTAGCCATTCTGTTGATCGCCATTCTGAGGGGAAGTGGCGCTGTCAAGATTCCTCTTAACTGTATCATGAAGATGC|TCAGCAGCCCCATCAGCAGCTTTCTTCAGGCCCCATCCATCATTGGCCCAATCATCAACTATTCTTCGATCAGCACAAATGATAAAGTTGTCAAAAAAAATGTCAGAGGTCATGGACCACAGCTCCAAACCAATAGCACTAAAAGGAGTCATTCTGAAAGGTTCCAGATCTTCAAAGAAATCTGGATTTGGTATTTTCCTGGGTTTCCAGATT 95 1.0 0.648619372526409 0.564185054074317 Y Y 3.84271856484967 2.8482315507469305 2.8482315507469305 0 0.0 0.0 Y 0.00223713646532442 N Y 11945 81139 ENSG00000161021 ENSG00000127022 - + 5 5 179223512 179157926 coding coding MAML1 CANX 179159851 179105629 + + 0.0 179192327 179150020 - + N - 0.829610552783296 N SA470 1 0.0 1.0 1 0 4 Y Y 0.0 0.0 100 1.52233490323144 1.48994479890737 1.52233490323144 1.48994479890737 4 - 42.38 0.980554975803131 HCT116-unstranded 10.0 1136449 TTTTTTGACAACTTTATCATTTGTGCTGATCGAAGAATAGTTGATGATTGGGCCAATGATGGATGGGGCCTGAAGAAAGCTGCTGATGGGGCTGCTGAGCCAGGCGTTGTGGGGCAGATGATCGAGGCAGCTGAAGAGCGCCCGTGGCTGTGGGTAGTCTATATTCTAACTGTAGCCCTTCCTGTGTTCCTGGTTATCCTCTTCTGCTGTTCTGGAAA|GCATCTTCATGATACAGTTAAGAGGAATCTTGACAGCGCCACTTCCCCTCAGAATGGCGATCAACAGAATGGCTACGGGGACCTCTTTCCTGGGCATAAGAAGACTCGCCGGGAGGCCCCTCTGGGAGTTGCCATCTCTTCCAATGGACTGCCTCCAGCCTCCCCCCTCGGTCAGTCTGACAAGCCTTCTGGAGCCGACGCCCTGCAGTC 62 1.0 0.894136420355843 0.693996018418522 Y Y 3.1746082532591804 3.84271856484967 3.1746082532591804 0 0.0 0.0 Y 0.0 N Y 81139 11945 ENSG00000127022 ENSG00000161021 + - 5 5 179157926 179223512 coding coding CANX MAML1 179105629 179159851 + + 0.0 179150780 179192327 + - N - - N SA470 1 0.0 1.0 1 0 4 Y Y 0.0 0.0 64 1.4445986528536698 1.35390636074626 1.4445986528536698 1.35390636074626 4 - - 0.994848257334812 HCT116-unstranded 10.0 1134800 GAGTACGTACCTGATCCAGACGCAGAGAAACCTGAGGATTGGGATGAAGACATGGATGGAGAATGGGAGGCTCCTCAGATTGCCAACCCTAGATGTGAGTCAGCTCCTGGATGTGGTGTCTGGCAGCGACCTGTGATTGACAACCCCAATTATAAAGGCAAATGGAAGCCTCCTATGATTGACAATCCCAGTTACC|AGCATCTTCATGATACAGTTAAGAGGAATCTTGACAGCGCCACTTCCCCTCAGAATGGCGATCAACAGAATGGCTACGGGGACCTCTTTCCTGGGCATAAGAAGACTCGCCGGGAGGCCCCTCTGGGAGTTGCCATCTCTTCCAATGGACTGCCTCCAGCCTCCCCCCTCGGTCAGTCTGACAAGCCTTCTGGAGCCGACGCCCTGCAGTCCAGTG 76 1.0 0.966291902384035 0.5714461898543229 Y Y 3.7061623612628 3.75016368088976 3.7061623612628 0 0.0 0.0 Y 0.0 N Y 81139 11945 ENSG00000127022 ENSG00000161021 + - 5 5 179157926 179223512 coding intron CANX MAML1 179105629 179159851 + + 0.0 179147561 179192327 + - N - 0.789032805333112 N SA470 1 0.0 1.0 1 0 4 Y Y 0.0 0.0 73 1.30208219382774 1.43164261112404 1.43164261112404 1.30208219382774 4 - 2.34246575342466 0.994848257334812 HCT116-unstranded 10.0 166360 ACTATTGATCCTAATGAGAGCAGAGTACCTGTGCCAGATGAAAGGTTTGACTTTCTTTGTCAATACCACAAACCAGCAAGCAAAATTCCTGCCTTTCTAAATGTGGTGGATATTGCTGGCCTTGTGAAAGGAGCTCACAATGGGCAGGGCCTGGGGAATGCTTTTTTATCTCATATTAGTGCCTGTGATGGCATCTTTCATCTAACAC|ACAGGTGATTTGGCTTCTGCACAGTTAGGAGGAGCACCAAACCGATGGGAGGTTTTGTCAGCCACACCTACAACTATAAAAGATGAAGCTGGTAATCTAGTCCAGATTCCAAGTGCTGCTACTTCAAGTGGGCAGTATGTTCTTCCCCTTCAGAATTTGCAGAATCAACAAATATTTTCCGTTGCACCAGGATCAGATTCATCAAATGGTACAGTGTCCAGTGTTCAATATCAAGT 80 0.682175913321299 0.7424591286974379 0.221667614762416 N Y 3.612079893993029 3.63721963736088 3.612079893993029 1 0.0 0.0 Y 0.0 N Y 12717 10845 ENSG00000138430 ENSG00000172845 + - 2 2 175113426 174830430 coding coding OLA1 SP3 174937175 174771187 - - 0.0 175087761 174820960 - + N - - N SA470 6 0.0166666666666667 3.47435897435897 1 74 2 N N 0.0 0.0166666666666667 78 1.36038438161107 1.55472500755551 1.55472500755551 1.36038438161107 4 - - 0.914180846438294 HCT116-unstranded 10.0 383644 ATTTGATGGTAGAGTGGTGGCAAAGCTTCCTTTTACCCCTCTTTCTTACATCCAAGGACTGTCTCATCGAAATCTGCTGGGAGATGACACCACAGACTGTTCCTTCATTTTCCTGTATATTCTCTGTACTATGTCGATTCGACA|GGAACGGGAGGATGAAATTGCTACTATGGAGTGCATCAACAATGGCAAGTCCATCTTTGAGGCCCGCTTGGACATTGACATTTCCTGGCAGTGCCTGGAGTATTATGCGGGCTTGGCTGCATCCATGGCTGGTGAACACATCCAGCTCCCAGGTGGATCGTTTGGTTATACCAGAA 6 0.4399774355876021 0.8100465465006429 0.476237400141566 Y Y 3.3901562521455086 3.60103760561896 3.3901562521455086 2 0.0 0.0 Y 0.0 N Y 7652 5147 ENSG00000143183 ENSG00000143149 + - 1 1 165796992 165668100 coding coding TMCO1 ALDH9A1 165693530 165631453 - - 0.0 165712404 165652347 - + N - - N SA470 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 5 0.8615767750203471 0.7449723994536841 0.8615767750203471 0.7449723994536841 4 - - 0.97613905433443 HCT116-unstranded 10.0 222950 CCTGAGTGCCGCTATGTGGCCAGCAGCTCCAAGGATGGCAGTGTGCGGATCTGGGACACAACTGCAGGCCGCTGTGAGCGCATCCTCACCGGGCACACCCAGTCGGTCACCTGTCTCCGGTGGGGAGGGGACGGGCTTCTCTACTCTGCCTCCCAGGACCGCACCATCAAAGTCTGGAGAGCTCATGAC|GTGACCAACCACATAACTCGAGACAGGGACAGCGGGAGGCTCAAACCTGCCCTCGGACGCTCCTGGAGCTTTGTGCCCAGCACTCGGATTCTCCTGGACACCATCGAGGGAGCAGGAGCATCAGGCGGCCGGCGCATGGCGTGTCTGGCCAAATCTTCCCGACAGCCAACAGGTTTCCAGGAGATGGTAGACATTG 6 0.555655057668902 0.788204163926828 0.452559032145426 Y Y 3.53039946453785 3.48912663185998 3.48912663185998 0 0.0 0.0 Y 0.0 N Y 9976 1557 ENSG00000073536 ENSG00000185379 + - 17 17 33469334 33448541 coding coding NLE1 RAD51D 33455772 33426811 - - 0.0 33464020 33428384 - + N - - N SA470 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 5 1.0623954218296 0.8680547958851621 1.0623954218296 0.8680547958851621 4 - - 0.994848257334812 HCT116-unstranded 10.0 222951 TGTGGGATGGCAGGACGGGCAAGTACCTGGCTTCCCTACGCGGCCACGTGGCTGCCGTGTACCAGATTGCGTGGTCAGCTGACAGTCGGCTCCTGGTCAGCGGCAGCAGTGACAGCACACTGAAGGTGTGGGATGTGAAGGCCCAGAAGCTGGCCATGGACCTGCCCGGCCACGCGGATGA|GGTGACCAACCACATAACTCGAGACAGGGACAGCGGGAGGCTCAAACCTGCCCTCGGACGCTCCTGGAGCTTTGTGCCCAGCACTCGGATTCTCCTGGACACCATCGAGGGAGCAGGAGCATCAGGCGGCCGGCGCATGGCGTGTCTGGCCAAATCTTCCCGACAGCCAACAGGTTTCCAGGAGATGGTAGACATTGGGACCTGGGGGACCTCAGAGCAGAGTGCCA 8 0.680800490971426 0.95512736842189 0.443137420707929 Y Y 3.35463656781289 3.45720067037699 3.35463656781289 0 0.0 0.0 Y 0.0 N Y 9976 1557 ENSG00000073536 ENSG00000185379 + - 17 17 33469334 33448541 coding coding NLE1 RAD51D 33455772 33426811 - - 0.0 33460358 33428384 - + N - - N SA470 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 17 1.14660969307219 1.25025802690923 1.25025802690923 1.14660969307219 4 - - 0.9937791697056568 HCT116-unstranded 10.0 728163 CGCGGATGGTGGGGAAGAACGTGAAGCTGTACGACATGGTGCTGCAGTTTCTGCGCACGCTCTTCCTGCGCACGCGGAATGTGCACTACTGCACGCTGCGGGCTGAGCTGCTCATGTCCCTGCACGACCTGGACGTGGGTGAAATCTGCACCGTGGACCCGTGCCACA|AGGGAGGGCGACCTGTATGCGGAGCGCCGTTCCTGCGACATGGACCGCGGCCAGCCCAGCCTGGAGCCTGCTGCCGCGGCCCCCCGAGCCTCGGGCCGGTGCGTGATCGCGCCCGTGCGCGCTGTGCTCCGCCTGCGCCGCCGGGTGTGTGTCCTACGCAAACGGCGCCTCCTGCAGCCGGGTGGGGGGC 11 0.894307937719772 0.962080123973922 0.626285351737645 Y Y 3.35872480420248 3.57233464462502 3.35872480420248 0 0.0 0.0 Y 0.0 N Y 11796 12617 ENSG00000188986 ENSG00000198113 + - 9 9 140167998 140177093 coding intron COBRA1 TOR4A 140149625 140172201 + + 0.0 140157674 140173105 + - N 1.33553592926623 0.193896198441967 N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 11 1.13365365134256 1.28912615209811 1.28912615209811 1.13365365134256 4 137.181818181818 26.4545454545455 0.9942315411823952 HCT116-unstranded 10.0 167496 TGCCACTCTTCAACATCCTGGCTAAGTTCAATGGCATCACTGAGAAGGAATATAAGACTTACAAGGAGAACTTTCTGAAGCGCTTCCAGCTTACCAAGTTGCCTCCATATCTAATCTTTTGTATCAAGAGATTCACTAAGAACAACTTCTTTGTTGAGAAGAATCCAACTATTGTCAATTTCCCTATTAC|GTCTGGTCTTCTCTCGTCTGAGCCCTGAGTACTACGACCTGGCAAGAGCCCACCTGCGTGATGAGGAGAAATCCTGCCCGTGCCTGGCCCAGGAGGGCCCCCAGGGTGACCTGTTGACCAAAACACAGGAGCTGGGCCG 9 0.608253347443579 0.979613260212503 0.7728756521413891 N Y 3.5110433747387795 3.36079094374226 3.36079094374226 0 0.0 0.0 Y 0.0 N Y 15876 110 ENSG00000168883 ENSG00000115523 + - 2 2 85876406 85925977 coding coding USP39 GNLY 85829979 85912298 + + 0.0 85868241 85922443 + - N - - N SA470 1 0.0 1.0 1 0 3 N N 0.0 0.0 14 1.21786792258515 0.855098754155533 1.21786792258515 0.855098754155533 4 - - 0.9932609216694972 HCT116-unstranded 10.0 164204 CTGGCTAAGTTCAATGGCATCACTGAGAAGGAATATAAGACTTACAAGGAGAACTTTCTGAAGCGCTTCCAGCTTACCAAGTTGCCTCCATATCTAATCTTTTGTATCAAGAGATTCACTAAGAACAACTTCTTTGTTGAGAAGAATCCAACTATTGTCAATTTCCCTATTAC|GTACAAAGTCCTACCAATTCTTCCTGAAATATGTTTCCTTATCAAAAAGTCCTGCAAAGCCGTGCGTGGTTGCTCATGCCTATAATCCCAGCACTTTGGAGGCTGGGAGGATCGCTTGAGTCCAGGAGTTCGAGACCAGCCTGGACAACATATGGAGACCCATCTCTACCAAAAATTTTAAAATCAGCAGGGGTGGTAGTGGCAAGCAC 8 0.817302502344837 0.265206419811939 0.244699263274448 N Y 3.5110433747387795 3.41679307359967 3.41679307359967 0 0.0 0.0 Y 0.0 N N 15876 110 ENSG00000168883 ENSG00000115523 + - 2 2 85876406 85925977 coding intron USP39 GNLY 85829979 85912298 + + 0.0 85868241 85919936 + - N - 0.154063060753653 N SA470 1 0.7224880382775121 1.0 1 0 3 N N 0.0 0.7224880382775121 6 0.952269067127752 1.12069760961293 1.12069760961293 0.952269067127752 4 - 0 0.980216139974979 HCT116-unstranded 10.0 167497 GGAGAACTTTCTGAAGCGCTTCCAGCTTACCAAGTTGCCTCCATATCTAATCTTTTGTATCAAGAGATTCACTAAGAACAACTTCTTTGTTGAGAAGAATCCAACTATTGTCAATTTCCCTATTAC|GTCTGGTCTTCTCTCGTCTGAGCCCTGAGTACTACGACCTGGCAAGAGCCCACCTGCGTGATGAGGAGAAATCCTGCCCGTGCCTGGC 9 9.650413296965556e-07 0.979613260212503 0.7728756521413891 N Y 3.5110433747387795 3.36079094374226 3.36079094374226 0 0.0 0.0 Y 0.0 N Y 15876 110 ENSG00000168883 ENSG00000115523 + - 2 2 85876406 85925977 coding coding USP39 GNLY 85829979 85912298 + + 0.0 85868241 85922443 + - N - - N SA470 1 0.0 1.0 1 0 3 N N 0.0 0.0 6 1.08830750528886 0.984659171451826 1.08830750528886 0.984659171451826 4 - - 0.987994885374266 HCT116-unstranded 10.0 166749 ATCTCATTTTGGCCATGCTGGGGGAACAGTTCATGGTTGGGGAGGAGATCTGTGGGGCTGTGGTGTCTGTCCGCTTTCAGGAAGACATTATTTCAATATGGAATAAGACTGCCAGTGACCAAGCAACCACAGCCCGAATCCGGGACACACTTCGGCGAGTGCTTAACCTACCTCCCAACACCATTATGGAATACAAAACTCACACCGACAGCATCAA|TGTTGGCTGCATACAGTGACTCCCTTCCAGCGAGTGCAGCGTGGAAAGGAGATCACAAGTGTAAAGCTGAGAATGGAGGAAGCTGAGCAATCCTGCCTCAGCCAGGTGGCCAGGTCAGCAGCGACAGGGAGAAGTCACGTGGTGGTGTGTACCCTTGACACGGTGTGATGAGGGAGGCACTTTACTTCTGTGGTCTTCTTTCTAAACATGCC 8 0.5654597553276199 0.57362831599026 0.21575326695149696 Y Y 3.4152256374964702 3.64400585547602 3.4152256374964702 1 0.0 0.0 Y 0.00703159280386123 N N 6280 477 ENSG00000135930 ENSG00000115468 + - 2 2 233448354 233547491 coding upstream EIF4E2 EFHD1 233414762 233470767 + + 0.0 233431924 233460244 + - N - - N SA470 2 1.0 1.1875 1 3 3 N Y 0.0 1.0 16 1.2632140686388602 1.15956573480182 1.2632140686388602 1.15956573480182 4 - - 0.906885053981466 HCT116-unstranded 10.0 796406 AGAGCAGAGCGCTTTGGGATTGCCTGATGAAAAGTTCCTGATACTTTCTGTTCTCCAGTGTTTTCCATTTCTCTCCTTCTTCTTGGTCACATATATGCCTAAATGCACAGTCATGTGCCTACGTCCTGCCTCGCAATGAGGGAGCATGTACCCCAGG|CCTGTGCAGTGGGACTGATTGCCGTGGGTGTCGGGGCACAGCTTGTCCTGAGTCAGACCATAATCCAGGGGGCTACCCCTGGCTCTCTGTTGCCAGTGGTCATCATCGCAGTGGGTGTCTTCCTCTTCCTGGTGGCTTTTGTGGGCTGCTGCGGGGCCTGCAAGGAGAACTATTGTCTTATGATCACG 8 0.617013775820722 0.284999065708115 0.396580728058502 N Y 3.69681549006792 3.37188666527882 3.37188666527882 0 0.0 0.00289017341040454 Y 0.0 N Y 3631 25879 ENSG00000205323 ENSG00000135404 + - 12 12 56211540 56123491 utr3p coding SARNP CD63 56146247 56119107 - - 0.0 56151167 56121123 - + N - - N SA470 2 0.0 1.14285714285714 1 1 2 N N 0.0 0.0 7 1.27617011036848 1.08182948442405 1.27617011036848 1.08182948442405 4 - - 0.970672685182422 HCT116-unstranded 10.0 730906 AAAAGGGGAGGCTGGACATGTAAAAGTCTGCAGTTCAGTGAGTCTTCCTTCCCTTGAAAGCAGGGAGCTCATATGTATAGAGGATATGTGAGCTTTCTTCAGTGGCAGGATGATACGATGTTCTTCTGAATGAGCTAGGCAAATTCTGCTTCTCTGATCATATTCCAAGTGATGAAAGGTCATCCCT|CTCCGTCCTTGCCACCAGGATGCAGTCCTGTTGCTGCCAAGCTGGCGATGGCATTCATGGTAGGCTGAACGTCTCCAGTGGCAGATCCCAGAATGTCAGACACCAACACACACGCAGACTTATCTAGCACCACTTCTTGGGC 7 0.921931702607519 0.494770727868711 0.7153821274207149 N Y 3.49168728493972 3.6282434885265897 3.49168728493972 0 0.992979086641058 0.0 Y 0.0 N Y 1913 1913 ENSG00000080608 ENSG00000080608 - + 9 9 2844241 2844241 intron coding KIAA0020 KIAA0020 2720469 2720469 - - 0.0 2720532 2811361 + - N 0.0182780880539639 0.206934517181539 N SA470 2 0.0 1.16666666666667 1 1 3 Y N 0.0 0.0 6 0.524719690049986 0.7708844829129431 0.7708844829129431 0.524719690049986 4 0.666666666666667 16 0.9672851839489748 HCT116-unstranded 10.0 733280 TCCTGCTTTCTCACCTCTAAAAGGGGAGGCTGGACATGTAAAAGTCTGCAGTTCAGTGAGTCTTCCTTCCCTTGAAAGCAGGGAGCTCATATGTATAGAGGATATGTGAGCTTTCTTCAGTGGCAGGATGATACGATGTTCTTCTGAATGAGCTAGGCAAATTCTGCTTCTCTGATCATATTCCAAGTGATGAAAGGTCATCC|TTTTGGGCCATTGGAGTTAGAATCTGTTTCATTTCATCCATAATAAGTTCTAATTTTTCTGGCTGTACCTCTAACACTTTGTCCAGAGTTCGGTGATCTGCTGACTGCAACAAAACAAAACAATCA 25 0.54339423339102 0.26348635330052 0.7005791236384 N Y 3.54400240599166 3.3519080808638 3.3519080808638 0 0.992087542087542 0.0 Y 0.0 N Y 1913 1913 ENSG00000080608 ENSG00000080608 - + 9 9 2844241 2844241 intron coding KIAA0020 KIAA0020 2720469 2720469 - - 0.0 2720532 2828675 + - N 0.0181442167212159 0.257964864391966 N SA470 2 0.184 1.23529411764706 1 4 3 Y N 0.184 0.0 17 0.8097526081018299 0.699626253399981 0.8097526081018299 0.699626253399981 4 0.235294117647059 8.88235294117647 0.955878763326419 HCT116-unstranded 10.0 733279 TGCTTTCTCACCTCTAAAAGGGGAGGCTGGACATGTAAAAGTCTGCAGTTCAGTGAGTCTTCCTTCCCTTGAAAGCAGGGAGCTCATATGTATAGAGGATATGTGAGCTTTCTTCAGTGGCAGGATGATACGATGTTCTTCTGAATGAGCTAGGCAAATTCTGCTTCTCTGATCATATTCCAAGTGATGAAAGGTCATCCCT|TGTAAAGCTGAAATGTGTTCCCATAGAGCTCTTCCGTCAGCATGTTCCTCTGCTCCAAAATGGCTTTGTCATTGTATGCGTACTCCACGATGGCTGATGCTTCCGCATGCCGCAGCATCTTCCTCACGTGGCCTTTAAAACTTCTGATTATCTCTGCAATCTGTGGTTTACTT 58 1.0 0.7635596572845891 0.595473347723641 N Y 3.49168728493972 3.52614339427891 3.49168728493972 1 0.994235026442012 0.0 Y 0.0 N Y 1913 1913 ENSG00000080608 ENSG00000080608 - + 9 9 2844241 2844241 intron coding KIAA0020 KIAA0020 2720469 2720469 - - 0.0 2720532 2829774 + - N 0.0182780880539639 0.290325845375668 N SA470 1 0.141666666666667 1.0 1 0 3 Y N 0.141666666666667 0.0 46 0.7773625037777572 1.14660969307219 1.14660969307219 0.7773625037777572 4 0.0869565217391304 6.34782608695652 0.994848257334812 HCT116-unstranded 10.0 294846 CAGGCTGATGTCGAGTATGAGCTCCGGTGCCTCCTCAATAAGCCAGAAAAGGACTGGACGGAGGAGGACCGGGCCCGGGAGAAGGTGCTGATGCAGGAGCTTGTGACCCTCATTGAGCAGCGCAACGCTATCATCAACTGCCTGGATGAGGACCGGCAGAGGGAGGAAGAGGAAGACAAGATGTTGGAAGCCATGATCAAGAAGAAAG|TTTTGATGGCGACGACTTTGATGATGTGGAGGAGGATGAAGGGCTAGATGACTTGGAGAATGCCGAAGAGGAAGGCCAGGAGAATGTCGAGATCCTCCCCTCTGGGGAGCGACCGCAGGCCAACCAGAAGCGAATCACCACACCATACATGACCAAGTACGAGCGAGCCCGCGTGCTGGGCACCCGAGCG 11 1.0 0.34831648106787605 0.43061075695659706 Y Y 3.21588108593705 3.0929278238039903 3.0929278238039903 0 0.0 0.0 Y 0.0 N Y 3493 8017 ENSG00000100139 ENSG00000100142 + - 22 22 38338829 38437113 coding coding MICALL1 POLR2F 38301664 38348614 + + 0.0 38333799 38352780 + - N - - N SA470 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 9 1.11421958874812 1.06887344269442 1.11421958874812 1.06887344269442 4 - - 0.952316606196859 HCT116-unstranded 10.0 941225 ATTATGAAATATAGCATGCTAGGAACTTACTCTGATGAATTTGGGAACCTAGATTTTGAGCGATCCCAGCATGGTTCTGGAATGAGCAACAGGTCAACAGCGAAAAGATTTATTTCTGCTCTCAACAACGTTGCTGAAAGAACTTATAATAATATATTTCAATTTCATCAACTTCGGCAGATTGCCAAAGAACTAAACATTCA|GTATGAAAACCCATGGACAATCCCGAATATGTTGTCAATGACGAGAATTGGCTTGGCCCCAGTTCTGGGCTATTTGATTATTGAAGAAGATTTTAATATTGCACTAGGAGTTTTTGCTTTAGCTGGACTAACAGATTTGTTGGATGGATTTATTGCTCGAAACTGGGCCAATC 8 0.8820593139123442 0.8482748554508671 0.244699263274448 N Y 3.55231620741665 3.3148913184448703 3.3148913184448703 0 0.994234985664126 0.0 Y 0.0 N Y 1674 3438 ENSG00000125885 ENSG00000088766 + - 20 20 5975852 6020699 coding coding MCM8 CRLS1 5931298 5986736 + + 0.0 5974341 5990421 + - N - - N SA470 1 0.0 1.0 1 0 2 Y N 0.0 0.0 12 1.26969208950367 1.10126354701849 1.26969208950367 1.10126354701849 4 - - 0.992339981631 HCT116-unstranded 10.0 6717 TATTAATTATCGAATCCAGTGTTCTGTCAGCGCGCTCAACCAGGGTCAAGTCTGGATTGGAGGCAGGATCACAGGCTC|GAGAATGATGCCCCCCATCTGGAGAGCCTAGAGACACAGGCAGACCTAGGCCAGGATCTGGATAGTTCAAAGGAGCAGGAGAGAGACTTGGCTCTGACGGAGGAGGTGATTCAGGCAGAGGGAGAGGAGGTCAAGGCTTCTGCCTGTCAAGACAACTTTGAGGATGAGGAAGCCATGGAGTCGGAC 5 3.65671328294522e-05 0.6785411066994029 0.677592896045438 Y Y 3.52208566311286 3.33676820853032 3.33676820853032 1 0.0 0.0 Y 0.0 N Y 252 70 ENSG00000186652 ENSG00000156575 + - 11 11 57158130 57148623 coding intron PRG2 PRG3 57154267 57144242 - - 0.0 57156050 57147280 - + N - 7.27283215653699 N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 12 1.1077415678833 1.03648333837034 1.1077415678833 1.03648333837034 4 - 0.416666666666667 0.9329334310700508 HCT116-unstranded 10.0 951115 GGGTGGAGCTACCCATGAACAGCAGCAATGGCAATGATAATGGCAATGGGAAAAATGGGGGGCTGGAACACGTACCATCCTCATCCTCCATCCACAATGGAGACATGGAGAAGATTCTTTTGGATGCACAACATGAATCAGGACAGAGTAGTTCCAGAGGCAGTTCTCACTGTGACAG|GCAAATAGGAGAAAATCTGATTGTGCCAGGAGGAGTGAAGACCATCGAGGCCCACTCCCGGATGGTGATCCCCGGAGGAATTGACGTCCACACTCGTTTCCAGATGCCTGATCAGGGAATGACGTCTGCTGATGATTTCTTCCAAGGAACCAAGGCGGCCCTGGCT 4 1.0 0.179692951305463 0.139394504180559 Y Y 3.4131060647942 3.41103992525442 3.41103992525442 0 0.0 0.0 Y 0.0 N Y 2410 4444 ENSG00000104765 ENSG00000092964 + - 8 8 26363152 26515694 coding coding BNIP3L DPYSL2 26240414 26371791 + + 0.0 26248942 26441315 + - N - - N SA470 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 8 1.05591740096479 1.07535146355923 1.07535146355923 1.05591740096479 4 - - 0.9408972747566908 HCT116-unstranded 10.0 374608 CCCTTGAGGACATCAGCTTTGGCCTCAGGGTCCTAATGGCAGCAGAACCACTGACAGAGCTAGAGGAGTCCATTGAGACCGTGGTCACCACCTTCTTCACCTTTGCAAGGCAGGAGGGCCGGAAGGATAGCCTCAGCGTCAACGAGTTCAAAGAGCTGGTTACCCAGCAGTTGCCCCATCTGCTCAA|GGATGCTCAGGAATTCAGTGATGTGGAGAGGGCCATTGAGACCCTCATCAAGAACTTTCACCAGTACTCCGTGGAGGGTGGGAAGGAGACGCTGACCCCTTCTGAGCTACGGGACCTGGTCACCCAGCAGCTGCCCCATCTCATGCCGGTATGGACGGAGCACACCCCACCTCAGCCAGTACCCTGACTTCCC 22 1.0 0.8033581893677941 0.388737377298 Y Y 3.52936639476796 3.41952156054875 3.41952156054875 0 0.0 0.0 Y 0.0 N Y 4275 6343 ENSG00000189171 ENSG00000189334 + - 1 1 153606873 153589462 coding intron S100A13 S100A14 153591263 153586731 - - 0.0 153598796 153587857 - + N - 2.84604882529248 N SA470 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 16 1.25025802690923 1.21138990172034 1.25025802690923 1.21138990172034 4 - 102.625 0.990940289148492 HCT116-unstranded 10.0 615494 CAGATCTTGGAGCTGCTGGTGTTAGAGCAGTTCCTGACCATCCTGCCCCAGGAGATCCAGAGCAGGGTGCAGGAGCTGCATCCGGAGAGCGGCGAAGAAGCGGTGACCCTTGTGGAGGATATGCAGAGAGAGCTTGGGAGACTGAGACA|ACAGGGTTAAAGCTCAAAAACGACACTGAAAATCATCAGCCTGTGTCTCTTTCTGACTTAGAAATACAAGCATCAGCAGGCGTCATATCAAAAAAGGCCAAAGTAAAAGTTCCCCAGAAAACAGCAGGCAAAGAAAATCATTTTGATATGCACAGAGTGGGAAAATGGCACCAAGATTTTCCAGTGAAGA 15 0.419586749168516 0.34919860212318604 0.424265818766376 Y Y 3.18717812494311 3.35832357661836 3.18717812494311 0 0.993308330043427 0.0 Y 0.0 N Y 13493 835 ENSG00000006194 ENSG00000162086 + - 16 16 3351401 3368852 coding coding ZNF263 ZNF75A 3313743 3355406 + + 0.0 3334205 3367190 + - N - - N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 16 0.9781811505870108 1.22434594344997 1.22434594344997 0.9781811505870108 4 - - 0.9094607120343 HCT116-unstranded 10.0 4517 CGAGGGGCCTGCGGGTGCCGGGGCGGGATGGCCTGCAGGTGGAGGGAGCAGGAAGCAGGTTGGCGACTCTTTTCTAGCCTTCCACTCGTCTGACCTGCAGATTGGGTTCTCTACACAACCTAGAAGTTCCTGAATTCTAACCACGACTGGGAAGAGAG|TTAAAACTAGTCCTCGAAAACCTCGTGGGAGACCTAGAAGTGGCTCTGACCGAAATTCAGCTATCCTCTCAGATCCATCTGTGTTTTCCCCTCTAAATAAATCAGAGACCAAATCTGGAGATAAGATCAAGAAGAAAGATTCTAAAAGTATA 3 0.589632272835835 0.8786265209297751 0.470743723550873 N Y 3.59528445727371 3.3755202409218 3.3755202409218 2 0.0 0.0 Y 0.00321543408360125 N N 10772 18416 ENSG00000167283 ENSG00000118058 + - 11 11 118302211 118397539 intron coding ATP5L MLL 118271869 118307205 + + 0.0 118272679 118342377 + - N 1.64969512830406 0.0654008145895949 N SA470 1 0.0 1.0 1 0 1 N N 0.0 0.0 6 0.855098754155533 0.8680547958851621 0.8680547958851621 0.855098754155533 4 993.166666666667 13 0.97613905433443 HCT116-unstranded 10.0 365963 GACGCTCAGTGTCATGCAGTCCCTGATCATGGTGTTCGCTCATCTGGTGCACACTCAGCTAGAACCTCTCTTGGAGTTCCTGTGTAGCCTCCCAGGACCTACTGGCAAACCTGCTCTAGAGTTTGTGATGGCTGAGTGGACAAGCCGACAGCACCTGTTCTATGGACAGTATGAAGGCAAAGTCAG|GAAAGCGTTTCTTTCCCTTGCTGGGGATTAAGAGACCAGCTTGGTGAGCGGGGGGTATTCCTGCCTGCCCTTACCTAGAGAAGGTGTAGTGAAGCCCTTCCAGGCCTGAAGATTTAGACAACTTCTTCCAGGGCCCCCAGTCCTCC 7 0.9171321421222758 0.301368713855047 0.31215266969435995 Y Y 3.707857778442 3.4921512932561405 3.4921512932561405 0 0.0 0.0 Y 0.0 N N 17931 1381 ENSG00000198700 ENSG00000198892 + - 1 1 201853422 201861434 coding upstream IPO9 SHISA4 201798269 201857808 + + 0.0 201840455 201855667 + - N - - N SA470 1 0.0 1.0 1 0 4 N Y 0.0 0.0 6 0.913400941938865 0.932835004533309 0.932835004533309 0.913400941938865 4 - - 0.987189628515871 HCT116-unstranded 10.0 294715 GGCCCCCACCCCCGCTGCCCCCCAGCCCCTGCAGATGGGGCCCTGCGCCTACGAGATCAGGCAGTTCCTGGACTGTTCCACCACTCAGAGTGACCTGTCCCTGTGTGAGGGCTTCAGCGAGGCCCTGAAGCAGTGCAAGTACTACCATG|TTTCCCAGACAGTCCTGGCCCAGCTGGATGCACTGCTGGTCTTCCCAGGCCAAGTGGCTCAACTCTCCTGCACGCTCAGCCCCCAGCACGTCACCATCAGGGACTACGGTGTGTCCTGGTACCAGCAGCGGGCAGGCAGTGCCCCTCGATATCTCCTCTACTACCGCTCGGAGGAGGATCACCACCGGCCT 22 0.9593989738023232 0.7997284758551679 0.532177650335673 Y Y 3.74656995804013 3.39487633072086 3.39487633072086 0 0.0 0.0 Y 0.0 N Y 4852 118 ENSG00000250479 ENSG00000128218 + - 22 22 24110630 24096655 coding coding CHCHD10 VPREB3 24108021 24094930 - - 0.0 24108315 24095385 - + N - - N SA470 2 0.0 1.34615384615385 1 9 2 Y Y 0.0 0.0 26 0.8939668793444209 1.22434594344997 1.22434594344997 0.8939668793444209 4 - - 0.970497309134106 HCT116-unstranded 10.0 294714 CTTTTTTGCGCCGGCTGTGACAAGCGCTGCGGCATTTGTCCCCGCGACAGCACCGCTGCCGCCGTCTCTAAGGTCGCCCGGGTCCCACCGCCGCCACCATGCCTCGGGGAAGCCGCAGCGCGGCCTCCCGGCCAGC|CAGTTTCCCAGACAGTCCTGGCCCAGCTGGATGCACTGCTGGTCTTCCCAGGCCAAGTGGCTCAACTCTCCTGCACGCTCAGCCCCCAGCACGTCACCATCAGGGACTACGGTGTGTCCTGGTACCAGCAGCGGGCAGGCAGTGCCCCTCGATATCTCCTCTACTACCGCTCGGAGGAGGATCACCA 4 0.987931630283608 0.848001196429025 0.8693147687471221 Y Y 3.15206901576442 3.38230645903694 3.15206901576442 1 0.0 0.0 Y 0.0 N Y 4852 118 ENSG00000250479 ENSG00000128218 + - 22 22 24110630 24096655 coding coding CHCHD10 VPREB3 24108021 24094930 - - 0.0 24110021 24095385 - + N - - N SA470 1 0.0 1.0 1 0 2 N Y 0.0 0.0 11 0.796796566372201 0.952269067127752 0.952269067127752 0.796796566372201 4 - - 0.990819863539721 HCT116-unstranded 10.0 294716 CGCACCCACCGCCCTCGGCAGCCGCCCCAGCCCCCGCCCCTTCGGGCCAGCCGGGGCTCATGGCTCAGATGGCGACCACGGCCGCAGGGGTAGCCGTGGGCTCGGCTGTGGGACACGTCATGGGCAGCGCCCTGACCGGAGCCTTCAGCGGGGGGAGCTCGGAGCCCTCCCAGCCTGCTGTCCAGCAGGCCCCCACCCCCGCTGCCCCCCAGCCCCTGCAGATGGGGCCCTGCGCCTACGAGATCAGGCAGTTCCTGGACTGTTCCACCACTCAGAGTGACCTGTCCCTGTGTGAGGGCTTCAGCGAGGCCCTGAAGCAGTGCAAGTACTACCATG|TTTCCCAGACAGTCCTGGCCCAGCTGGATGCACTGCTGGTCTTCCCAGGCCAAGTGGCTCAACTCTCCTGCACGCTCAGCCCCCAGCACGTCACCATCAGGGACTACGGTGTGTCCTGGTACCAGCAGCGGGCAGGCAGTGCCCCTCGATATCTCCTCTACTACCGCTCGGAGGAGGATCACCACCGGCCTGCTGACATCCCCGATCGATTCTCGGCAGCCAAGGATG 20 1.83957767632328e-08 0.963237112060704 0.582713280772946 Y Y 3.74656995804013 3.39487633072086 3.39487633072086 0 0.0 0.0 Y 0.0 N Y 4852 118 ENSG00000250479 ENSG00000128218 + - 22 22 24110630 24096655 coding coding CHCHD10 VPREB3 24108021 24094930 - - 0.0 24108315 24095385 - + N - - N SA470 2 0.21505376344086 1.29411764705882 1 5 2 Y Y 0.21505376344086 0.0 17 1.20491188085552 1.50937886150181 1.50937886150181 1.20491188085552 4 - - 0.968244183667883 HCT116-unstranded 10.0 6449 CGCCAGTGGAAGGTGACCTCTGAAGACCTGATCTTAATTGGAAATGAACTAGACCTTGCGTGTGGAGAGAGAATTCGACTGGAGAAGGTCCTGCTGGTTGGGGCAGACAACTTCACGCTGCTTGGCAAGCCACTCCTCGGAAAGGATCTTGTTCGAGTAGAAGCCACAGTCATTGAAAAGACAGAATCATGGCCAAGAATCATTATGAGATTCAGGAAAAGGAAAAACTTCAAGAAGAAAAGAAGTA|CTCTCTGAAGATGGCAGAAGCTCACCAAGCTGTGGCCTTTCAGTTCACGGTCACTCCGGACGGGATTGACCTGCGGCTGAGCCATGAAGCTCTTAGACAAATCTATCTCTCTGGACTTCATTCCTGGAAAAAGAAGTTCATCAGATTCAAGAACGGCATCATCACTGGCGTGTACCCGGCAAGCCCCTCCAGT 10 0.4824772620624129 0.992525282080668 0.617388441012113 N Y 2.90508956893507 3.5465630590714 2.90508956893507 0 0.0 0.0 Y 0.0 N Y 1904 11045 ENSG00000197345 ENSG00000110090 + - 11 11 68671303 68611878 coding utr5p MRPL21 CPT1A 68658744 68522088 - - 0.0 68660358 68582955 - + N - - N SA470 2 0.0 1.14285714285714 1 1 1 N N 0.0 0.0 7 1.22434594344997 0.9781811505870108 1.22434594344997 0.9781811505870108 4 - - 0.931934866210563 HCT116-unstranded 10.0 6919 GTACACGCCAGTGATGATGCCGTTCTTGAATCTGATGAACTTCTTTTTCCAGGAATGAAGTCCAGAGAGATAGATTTGTCTAAGAGCTTCATGGCTCAGCCGCAGGTCAATCCCGTCCGGAGTGACCGTGAACTGAAAGGCCACAGCTTGGTGAGCTTCTGCCATCTTCAGAGAGT|ACCTTCTCCAGTCGAATTCTCTCTCCACACGCAAGGTCTAGTTCATTTCCAATTAAGATCAGGTCTTCAGAGGTCACCTTCCACTGGCGGCTGGCAAAGTGCACCACGGCAAAGAGCCTGCCATACTGCCCCGTGACGATCATCTCATTCACCTTCTTCACGACCTCTGCAGGGGAAGGCGGGTGGGTGGGCAGTCACCCTCA 11 0.783615957946499 0.962080123973922 0.583797841904777 N Y 3.63080414160633 3.56695221864035 3.56695221864035 1 0.0 0.0 Y 0.0 N Y 11045 1904 ENSG00000110090 ENSG00000197345 - + 11 11 68611878 68671303 utr5p utr3p CPT1A MRPL21 68522088 68658744 - - 0.0 68582955 68663983 + - N - 0.277666206041657 N SA470 1 0.0 1.0 1 0 1 Y N 0.0 0.0 12 1.12717563047775 1.29560417296293 1.29560417296293 1.12717563047775 4 - 71.5833333333333 0.9927735180064732 HCT116-unstranded 10.0 941453 AAATGGAATCGCGTTCCATCCTGTTCATGGCACCCTTGCAACTGTGGGATCTGATGGTAGATTCAGCTTCTGGGACAAAGATGCCAGAACAAAACTAAAAACTTCGGAACAGTTAGATCAGCCCATCTCAGCTTGCTGTTTCAATCACAATGGAAACATATTTGCATACGCTTCCAGCTACGACTGGTCAA|AGGTGACCATGGCCGACCGGGCGGCAGCTGAGAGGGCTTGCAAAGACCCGAACCCCATCATCGACGGCCGCAAGGCCAACGTGAACCTGGCATATCTGGGCGCCAAGCCGCGGAGCCTCCAGACGGGCTTTGCCATTGGGGTGCAGCAGCTGCACCCCACCTTGATCCA 4 1.0 0.878131276361254 0.4680278779405681 Y Y 3.7574444125448494 3.40591861909494 3.40591861909494 7 0.0 0.0 Y 0.0 N Y 5509 7342 ENSG00000101146 ENSG00000132819 + - 20 20 55954267 55984389 coding utr5p RAE1 RBM38 55926066 55966463 + + 0.0 55949857 55967710 + - N - - N SA470 1 0.0 1.0 1 0 4 Y Y 0.0 0.0 5 0.8680547958851621 1.06887344269442 1.06887344269442 0.8680547958851621 4 - - 0.989073379051814 HCT116-unstranded 10.0 941642 AGGACATTTATGCGGTAAATGGAATCGCGTTCCATCCTGTTCATGGCACCCTTGCAACTGTGGGATCTGATGGTAGATTCAGCTTCTGGGACAAAGATGCCAGAACAAAACTAAAAACTTCGGAACAGTTAGATCAGCCCATCTCAGCTTGCTGTTTCAATCACAATGGAAACATATTTGCATACGCTTCCAGCTACGACTGGTCAAA|GGCTGACCCCGCACTACATCTACCCACCAGCCATCGTGCAGCCCAGCGTGGTGATCCCAGCCGCCCCTGTCCCGTCGCTGTCCTCGCCCTACATTGAGTACACGCCGGCCAGCCCGGCCTACGCCCAGTACCCACCGGCCACCTATGACCAGTACCCATACGCCGCCTCG 10 0.989267671645752 0.7715640506036221 0.36004135392892705 Y Y 3.67320333000993 3.4378445805779303 3.4378445805779303 0 0.0 0.0 Y 0.00263852242744067 N Y 5509 7342 ENSG00000101146 ENSG00000132819 + - 20 20 55954267 55984389 coding coding RAE1 RBM38 55926066 55966463 + + 0.0 55949857 55982599 + - N - - N SA470 1 0.0 1.0 1 0 4 N Y 0.0 0.0 12 1.36686240247589 1.01057125491108 1.36686240247589 1.01057125491108 4 - - 0.993718818353945 HCT116-unstranded 10.0 941451 GAAGGATATTGAAGTAACATCATCTCCTGATGATAGCATTGGTTGTCTGTCTTTTAGCCCACCAACCTTGCCGGGGAACTTTCTTATTGCAGGATCATGGGCTAATGATGTTCGCTGCTGGGAAGTTCAAGACAGTGGACAGACCATTCCAAAAGCCCAGCAGATGCACACTGGGCCTGTGCTTGATGTCTGCTGGAGTGACG|CTGACCCCGCACTACATCTACCCACCAGCCATCGTGCAGCCCAGCGTGGTGATCCCAGCCGCCCCTGTCCCGTCGCTGTCCTCGCCCTACATTGAGTACACGCCGGCCAGCCCGGCCTACGCCCAGTACCCACCGGCCACCTATGACCAGTACCCATACGCCGCCTCGCCTGCCACGGCTGCCAGCTTCGTGGGCTACAGCTAC 5 0.82347888715444 0.4897142739591479 0.38581426923386297 Y Y 3.39593990571429 3.38656252929588 3.38656252929588 1 0.0 0.0 Y 0.0 N Y 5509 7342 ENSG00000101146 ENSG00000132819 + - 20 20 55954267 55984389 coding coding RAE1 RBM38 55926066 55966463 + + 0.0 55931594 55982599 + - N - - N SA470 1 0.0 1.0 1 0 4 N Y 0.0 0.0 9 1.16604375566664 1.21786792258515 1.21786792258515 1.16604375566664 4 - - 0.989006818533532 HCT116-unstranded 10.0 89956 GCGGCGTAGAGCACTGCAGCAGCAATGACGGAGGGCACGTGTCTGCGGCGCCGAGGGGGCCCCTACAAGACCGAGCCCGCCACCGACCTCGGCCGCTGGCGACTCAACTGCGAGAGGGGCCGGCAGACGTGGACCTACCTGCAGGACGAGCGCGCCGGCCGCGAGCAGACCGGCCTGGAAGCCTACGCCCTGGGGCTGGACACC|TTCCAGATTTCGGAAGGTTCACGAGTGTTGCCGACACGCCCTCCCAACTGCAGACATCCTCCCTGGAGGACCTGCTGTGCTCACATGCCCCCCTGTCCAGCGAGGACGACACCTCCCCGGGCTGTGCAGCCCCCTCCCAGGCACCCTTCAAGGCCTTCCTCAGTCCCCCAG 11 1.0 0.62528128908726 0.950217617314149 Y Y 3.31336373513502 3.6491271616355 3.31336373513502 0 0.0 0.0 Y 0.0 N Y 10247 211 ENSG00000160285 ENSG00000160284 + - 21 21 47648738 47604390 coding coding LSS C21orf56 47608360 47581062 - - 0.0 47648348 47588572 - + N - - N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 9 1.3150382355573702 0.939313025398123 1.3150382355573702 0.939313025398123 4 - - 0.983053352002121 HCT116-unstranded 10.0 222959 GTGCTGCTGAGCATCCCGTTTGTGAGTGTCCCTGTCGTCTGGACCCTCACCAACCTCATTCACAACATGGGCATGTATATCTTCCTGCACACGGTGAAGGGGACACCCTTTGAGACCCCGGACCAGGGCAAGGCGAGGCTGCTAACCCACTGGGAGCAGATGGATTATGGGGTCCAGTTCACGGCCTCTCGGAAGTTCTTGACCATCACACCCATCGTGCTG|CGCAATGTTCAGCGTATTTGAGGAAATCACAAGAATTGTAGTTAAGGAGATGGATGCTGGAGGGGATATGATTGCCGTTAGAAGCCTTGTTGATGCTGATAGATTCCGCTGCTTCCATCTGGTGGGGGAGAAGAGAACTTTCTTTGGATGCCGGCACTACACAAC 9 0.7728011097900408 0.739743645021417 0.919106627021197 Y Y 3.71720464963688 3.58424216889964 3.58424216889964 1 0.0 0.0 Y 0.0 N Y 1286 318 ENSG00000172057 ENSG00000073605 + - 17 17 38083854 38077313 coding utr5p ORMDL3 GSDMB 38077294 38060848 - - 0.0 38079365 38073574 - + N - 8.18023950392536 N SA470 1 0.0 1.0 1 0 2 N Y 0.0 0.0 15 1.30208219382774 1.0623954218296 1.30208219382774 1.0623954218296 4 - 2.53333333333333 0.9921004685957132 HCT116-unstranded 10.0 108792 CTGGAGGCCTTCAGCTTGGCCCTGCTCAGGTAGAGCTTCCGCCACGACAGGGCCTGTACCGAGTGGTGGTTAGAGGTGACCAGTTCCAGGTAGCTGCGGCGGACCCAGTCCCGGTAATCCATGCCCTTATGGCCGGGCTCAGGGCAGGCAGGAGCAGAGGGGTCGATAGGCACGTTAAGCTCAGCACTCATGGTGGGAGCCAGG|CTTCTCAGCCATGGCATCCATGTAGTCCTGTCGCTGATATTCTCTCCGGCGCAGATGTCTGTACACGTGGAACTCTCCACTGCCGGCCCCAGCACTTGAACCTGTAGCCAGAACAGTCCACAGTTCTAGATGAAATTCAGTTACCAACACAGGTCACCCTTAA 10 0.5166258648572299 0.721928407016052 0.7693200712911751 Y Y 3.7340000863562 3.60632674564779 3.60632674564779 0 0.9938817017871427 0.0 Y 0.0 N Y 4602 3422 ENSG00000160991 ENSG00000128563 - + 7 7 102097268 102067123 utr5p coding ORAI2 PRKRIP1 102073553 102004319 + + 0.0 102079391 102040095 - + N - 2.31367147778285 N SA470 1 0.0 1.0 1 0 6 Y Y 0.0 0.0 6 1.01057125491108 1.03000531750553 1.03000531750553 1.01057125491108 4 - 14.5 0.985782421210455 HCT116-unstranded 10.0 106704 CCAGAATTTGTCCGAGATGTCATGGGTTCAAGTGCTGGGGCCGGCAGTGGAGAGTTCCACGTGTACAGACATCTGCGCCGGAGAGAATATCAGCGACAGGACTACATGGATGCCATGGCTGAGAAGCAAAAATTGGATGCAGAGTTTCAGAAAAGACTGGAAAAGAATAAAATTGCTGCAGAGGAGCAGACCGCAAAGCGCCGGAAGAAGCGCC|TGGCTCCCACCATGAGTGCTGAGCTTAACGTGCCTATCGACCCCTCTGCTCCTGCCTGCCCTGAGCCCGGCCATAAGGGCATGGATTACCGGGACTGGGTCCGCCGCAGCTACCTGGAACTGGTCACCTCTAACCACCACTCGGTACAGGCCCTGTCGTGGCGGAAGCTCTACCTGAGCAGGGC 14 0.493643789329343 0.794861014925215 0.885125564612041 Y Y 3.1107563302932 3.787842790717991 3.1107563302932 1 0.9945788384003492 0.0 Y 0.0 N Y 3422 4602 ENSG00000128563 ENSG00000160991 + - 7 7 102067123 102097268 coding utr5p PRKRIP1 ORAI2 102004319 102073553 + + 0.0 102045130 102079391 + - N - - N SA470 1 0.0 1.0 1 0 6 Y Y 0.0 0.0 13 1.29560417296293 1.19843385999071 1.29560417296293 1.19843385999071 4 - - 0.9787236876879392 HCT116-unstranded 10.0 106706 AGAGAATATCAGCGACAGGACTACATGGATGCCATGGCTGAGAAGCAAAAATTGGATGCAGAGTTTCAGAAAAGACTGGAAAAGAATAAAATTGCTGCAGAGGAGCAGACCGCAAAGCGCCGGAAGAAGCGC|CTGGCTCCCACCATGAGTGCTGAGCTTAACGTGCCTATCGACCCCTCTGCTCCTGCCTGCCCTGAGCCCGGCCATAAGGGCATGGATTACCGGGACTGGGTCCGCCGCAGCTACCTGGAACTGGTCA 12 5.669869962447599e-08 0.9679847349866793 0.9580263933097 Y Y 3.13011242009227 3.76592604783919 3.13011242009227 0 0.992156268927923 0.0 Y 0.0 N Y 3422 4602 ENSG00000128563 ENSG00000160991 + - 7 7 102067123 102097268 coding utr5p PRKRIP1 ORAI2 102004319 102073553 + + 0.0 102045130 102079391 + - N - - N SA470 1 0.0 1.0 1 0 6 Y Y 0.0 0.0 7 1.12717563047775 1.3862964650703302 1.3862964650703302 1.12717563047775 4 - - 0.9860580710831792 HCT116-unstranded 10.0 692097 ATCTTCTGTATGCATGGGACAGGAAGATAATATGACCTCAGTAACAAACCACTTTTCTCAATCAAAGCTGGACTCCCCAGAGGAATTGGAACCTGACAGAGAAGAGGATTCTTCTAGCTGTATTGATATTCAAGAAGTTCTTTCTTCATCAGAATCAGATTCATGCAAT|AGGGTGGACCCAGCAGATCCGTCCGTGGAGTCTCCAGGAGTGGAGCCCCGGGCGCCCCTACACCCTCCGACACGCCGGATCCGGCCCAGCCGCGCCAAGCCGTAAAGGGCTCGAAGGCCGGGGCGCACCGCTGCCGCCAGGGTCATGGAGGGCGCGCTC 11 0.00016609991828243898 0.7920581961947121 0.5548850218426989 Y Y 3.16203838157526 3.36654409208751 3.16203838157526 1 0.993729808262125 0.0 Y 0.0 N Y 1925 1613 ENSG00000070950 ENSG00000180914 + - 3 3 9005457 8811314 coding utr5p RAD18 OXTR 8817088 8792094 - - 0.0 8940578 8810015 - + N - - N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 9 1.35390636074626 1.36686240247589 1.36686240247589 1.35390636074626 4 - - 0.9624104877684307 HCT116-unstranded 10.0 692096 AGAAAAGCTATCTTCTGTATGCATGGGACAGGAAGATAATATGACCTCAGTAACAAACCACTTTTCTCAATCAAAGCTGGACTCCCCAGAGGAATTGGAACCTGACAGAGAAGAGGATTCTTCTAGCTGTATTGATATTCAAGAAGTTCTTTCTTCATCAGAATCAGATTCATGCAAT|AGGGTGGACCCAGCAGATCCGTCCGTGGAGTCTCCAGGAGTGGAGCCCCGGGCGCCCCTACACCCTCCGACACGCCGGATCCGGCCCAGCCGCGCCAAGCCGTAAAGGGCTCGAAGGCCGGGGCGCACCGCTGCCGCCAGGGTCATGGAGGGCGCGCTCGCAGCCAACTGGAGCGCCGAGGCAGCCAACGCCAGCGCCGCGCCGCCGGGGGCCGAGGGCAACCGCACCGCCGGAC 11 0.775119946762091 0.7920581961947121 0.5548850218426989 Y Y 3.16203838157526 3.36654409208751 3.16203838157526 1 0.9943955924659392 0.0 Y 0.0 N Y 1925 1613 ENSG00000070950 ENSG00000180914 + - 3 3 9005457 8811314 coding utr5p RAD18 OXTR 8817088 8792094 - - 0.0 8940578 8810015 - + N - - N SA470 1 0.10096153846153802 1.0 1 0 1 Y Y 0.0 0.10096153846153802 13 1.22434594344997 1.34742833988145 1.34742833988145 1.22434594344997 4 - - 0.9927735180064732 HCT116-unstranded 10.0 795797 CGCCTCTTTGGCAGCTGGTCACATGGTGAGGGTGGGGGTGAGGGGGCCTCTCTAGCTTGCGGCCTGTGTCTATGGTCGGGCCCTCTGCGTCCAGCTGCTCCGGACCGAGCTCGGGTGTATGGGGCCGTAGGAACCGGCTCCGGGGCCCCGATAACGGGCCGCCCCCACAGCACCCCGGGCTGGCGTGAG|AATCGTCGGGGTAGTGACTCCGAGAAACGAAGCTTGGATAGTCGGGGAGAGACAACAGGGAGTGGGCGAGCCATCCCCATCAAACAGAGCTTCCTACTAAAACGAAGTGGCAATTCCTTGAACAAAGAATGGAAGAAGAAATATGTAACCCTGTCCAGTAATGGCTTTCTAC 8 0.95790696065546 0.865943275601726 0.8687134937216271 Y Y 3.2876854355372407 3.64553343878587 3.2876854355372407 1 0.9942021071566228 0.0 Y 0.0 N Y 19589 2296 ENSG00000135446 ENSG00000135439 + - 12 12 58149796 58135940 utr5p coding CDK4 AGAP2 58142034 58118981 - - 0.0 58145958 58125425 - + N - - N SA470 1 0.0 1.0 1 0 2 N Y 0.0 0.0 11 1.08830750528886 1.08182948442405 1.08830750528886 1.08182948442405 4 - - 0.9921004685957132 HCT116-unstranded 10.0 967273 GTATGCCTTTTTCTGTGTATGGGAATGCAATGATTCCTCCAGTAGCACCTATCCCTGATGGTGCTGGAGGACCCATATTTAATGGCCCTCATGCTGCAGACCCTTCTTGGAACTCACTGATAAAGATGGTTTCCAGCTCCACGGAAAATAATGGCCCTCAAACGG|CTCACTTATCTAAAGAATATGAGGAGGCTAATTTCAGAGCTATATGTGCGAGATAACTGCCACCCTTTCAAAGCCACTGTGTTGGTTTGGATTCAGCTTCCAATGTGGATCTTCATGTCTTTTGCTCTCCGGAATTTAAGCACGGGGGCAGCACATTCAGAAGGTTTTTCTGTTCAGGAACAGTTAGCTACTGGTGGAATTCTGTGGTTTCCTGACCTCACTGCACCC 27 1.0 0.35910535804672705 0.610587571282238 Y Y 3.588962247475 3.4471914517728104 3.4471914517728104 2 0.0 0.0025380710659898 Y 0.0025380710659898 N Y 16624 1057 ENSG00000132466 ENSG00000163626 + - 4 4 74124515 73935472 coding coding ANKRD17 COX18 73939093 73921797 - - 0.0 73942657 73931130 - + N - - N SA470 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 17 1.03000531750553 1.3862964650703302 1.3862964650703302 1.03000531750553 4 - - 0.987144059482032 HCT116-unstranded 10.0 372630 CGAGGAGCATATCGACAAAGTCTTCAAACACAAGGACCTACAACAGCAGCTGGTGGATGCCAAGCTCCAGCAGGCCCAGGAGATGCTAAAGGAGGCAGAAGAGCGGCACCAGCGGGAGAAGGATTTT|GCCTGAGGCCCAGCCAGCGCCCAATGGATGACAAAAAGAAGAAACGGAGTCCCAAGCCCTGCCTGGCCCAGCCAGCCCAGGCCCCAGGCACACTACGGAGGGTCCCTGTGCCTACCAGCCACAGCGGCTCCTTGGCCCTAGGA 4 0.0067296722444609896 0.61823981087236 0.436262861348108 Y Y 3.01654588194744 3.1955012739379103 3.01654588194744 0 0.952930237963797 0.0 Y 0.0 N Y 6439 552 ENSG00000084652 ENSG00000160050 + - 1 1 32663886 32670988 coding utr5p TXLNA CCDC28B 32645287 32665987 + + 0.0 32658031 32667514 + - N - - N SA470 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 6 1.21786792258515 0.9781811505870108 1.21786792258515 0.9781811505870108 4 - - 0.9676490891405553 HCT116-unstranded 10.0 377023 GAGCCTATGCCGTGAGCTGCAGCGGCACAACCGCTCCCTCAAGGAAGAAGGTGTGCAGCGGGCCCGGGAGGAGGAGGAGAAGCGCAAGGAGGTGACCTCGCACTTCCAGGTGACACTGAATGACATTCAGCTGCAGATGGAACAGCACAATGAGCGCAACTCCAAGCTGCGCCAAGAGAACATGGAGCTGGCTGAGAGGCTCAAGAAGCTGATTGAGCAGTATGAGCTGCGCGAGG|AGGCCTGAGGCCCAGCCAGCGCCCAATGGATGACAAAAAGAAGAAACGGAGTCCCAAGCCCTGCCTGGCCCAGCCAGCCCAGGCCCCAGGCACACTACGGAGGGTCCCTGTGCCTACCAGCCACAGCGGCTCCTTGGCCCTAGGACTTCCTCATCTGCCATCCCCCAAGCAGCGGGC 19 1.0 0.9294776730771972 0.745845516038124 Y Y 3.50268972052044 3.1987242744269504 3.1987242744269504 0 0.994363929146538 0.0 Y 0.0 N Y 6439 552 ENSG00000084652 ENSG00000160050 + - 1 1 32663886 32670988 coding intron TXLNA CCDC28B 32645287 32665987 + + 0.0 32655850 32667514 + - N - - N SA470 1 0.0 1.0 1 0 2 N Y 0.0 0.0 12 1.49642281977218 1.15956573480182 1.49642281977218 1.15956573480182 4 - - 0.994848257334812 HCT116-unstranded 10.0 654846 CGCCTGCCGCGGTCGGGTCCGCGGCCTGCGCTGTAGCGGTCGCCGCCGTTCCCTGGAAGTAGCAACTTCCCTACCCCACCCCAGTCCTGGTCCCCGTCCAGCCGCTGACGTGAAGATGAGCAGCTCAGAGGAGGTGTCCTGGATTTCCTGGTTCTGTGGGCTCCGTGGCAATGAATTCTTCTGTGAA|ACAACATGCAGGCCATCTATGTGGCCTTGGGGGAGGCAGTAGAGCTGCCATGTCCCTCACCACCTACTCTACATGGGGACGAACACCTGTCATGGTTCTGCAGCCCTGCAGCAGGCTCCTTCACCACCCTGGTAGCCCAAGTCCAAGTGGGCAGGCCAGCCCCAG 28 1.0 0.7575024979659909 0.7866076348846179 N Y 3.418448637985509 3.5597647729410897 3.418448637985509 1 0.0 0.0 Y 0.0 N Y 21323 125 ENSG00000204435 ENSG00000204424 + - 6 6 31638120 31685581 coding coding CSNK2B LY6G6F 31633013 31674640 + + 0.0 31634680 31675235 + - N - 0.0629441925739549 N SA470 1 0.0 1.0 1 0 1 N N 0.0 0.0 18 1.22434594344997 1.06887344269442 1.22434594344997 1.06887344269442 4 - 0.111111111111111 0.992455626252426 HCT116-unstranded 10.0 732648 CATTTCCAGCAAGAGGGAGAGGGTGAAGATTCTCTACAAAAAGATTGAAGATCTGATCAAGTACCTGGATCCTGAGTACATCGACCGCATTGCCATACCTGATGCCTCTAAGCTGCAATTCATCCTAGCA|GTGGGCAGCGAGAGTCACAGACAAGACAGCAAGCAGGATGGAGCACTACCGGAAAGCTGGCTCTGTAGAGCTCCCAGCGCCTTCCCCAATGCCCCAGCTACCTCCTGATACCCTTGAGATGCGGGTCCGAGATGGCAGCAAAATTCGCAACCTGCTGGGGTTGGCTCTGGGTCGGTTGGAGGGCGGCAGTGCTCGGCATGTAGTGTTCTCAGG 8 0.9932169024776658 0.685365348564398 0.708238625483703 Y Y 3.5231187328827502 3.20075056117338 3.20075056117338 0 0.0 0.0 Y 0.0 N Y 4381 4415 ENSG00000137100 ENSG00000164967 + - 9 9 34620515 34612101 coding utr5p DCTN3 RPP25L 34613548 34610483 - - 0.0 34617882 34611329 - + N - - N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 14 1.1919558391258898 1.10126354701849 1.1919558391258898 1.10126354701849 4 - - 0.986468253716583 HCT116-unstranded 10.0 655226 CCACCAACTGGGGACAGCCATGCCTATGTCGGTGGAGGAAGGGCCTGAGTGCCAGGGACCTGTGGTTGACAGGCGCTGCCCTCGATGTGGTCATGAAGGAATGGCATACCACACCAGACAGATGCGTTCAGCCGATGAAGGGCAAACTGTCTTCTACACCTGTACCAACTGCAA|AGAAACCCAGACCAAACAAGGAAAGGGAAATAGGCCACGGTAGGGTCATTACTATTGCTCCTTAAGCTTCCTCGCCGGTCCACCTACCCAGACAAGGCAAACGGAAATCTGCAGCAGGACTCAGCTTGGTGCACACAACTCCGCCCTCGCCACACCCACTCTGCAGCGTCTGGCCCGGCAATACCCATCTGGGCGCCCCTCCTGCTTCCTCTAGG 3 0.986803817716835 0.787019351961376 0.932206681424489 Y Y 3.54719490125717 2.93446422490813 2.93446422490813 1 0.994267609784851 0.0 Y 0.0 N N 1217 1426 ENSG00000066379 ENSG00000204619 + - 6 6 30032686 30038110 coding utr5p ZNRD1 PPP1R11 30026676 30034486 + + 0.0 30030110 30034570 + - N - 0.0420034735224617 N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 5 1.04296135923516 1.22434594344997 1.22434594344997 1.04296135923516 4 - 0.8 0.9802491171835932 HCT116-unstranded 10.0 381182 TGAGGTCTTGAAGCAGCTGGCTGAGAAACGAGAGCACGAGAAAGAAGTGCTTCAGAAGGCAATAGAAGAGAACAACAACTTCAGTAAAATGGCAGAAGAGAAACTGACCCACAAAATGGAAGCTAATAAAGAGAACCGAGAGGCACAAATGGCTGCCAAACTGGAACGTTTGCGAGAGAAG|ACACATTTAATCAAACCAGGCACCAAAATGCTAACACTCCTTCCTGGAGAAAGAAAGGCTAATATTTATTTTACTCAAAGAAGAGCTCCATCTACAGGCATTCACCAGAGAAGCATTGCTTCCTTCTTCACCTTGCAGCCAGGAAAGACAAATGGCAGTGACCAGAAGAGTGTTTCATCTCATACAGAAAGTCAGATCAACAAAGA 3 0.8945545729219609 0.663821668100057 0.944115653105106 N Y 3.46807512488172 3.23061038311659 3.23061038311659 0 0.9944893774562852 0.0 Y 0.0 N Y 48505 2078 ENSG00000117632 ENSG00000127423 + - 1 1 26233482 26185903 coding coding STMN1 AUNIP 26210672 26158414 - - 0.0 26227982 26164045 - + N - - N SA470 1 0.0 1.0 1 0 1 Y N 0.0 0.0 5 0.816230628966645 1.21138990172034 1.21138990172034 0.816230628966645 4 - - 0.983053352002121 HCT116-unstranded 10.0 381887 GGCCAAAGTGGGTGGGAGCGCGTGCTGTTGGGAGTTGCTTGGAGGTTGGCGGCGCGGGGCTGAAGGCTAGCAAACCGAGCGATCATGTCGCACAAACAAATTTACTATTCGGACAAATACGACGACGAGGAGTTTGAGTATCGGTTAGTGCTGGCGCGGGAGCAATAGCGAGGGTCGTGAGCTTTGGCCGCTGAGGGCACAAGGAATTAGTAACAGGAACTGAGGCGATAGAATTGGCGCATGCGTACGAG|GGACACACTCAGGACACCAACACCTTCTTTCTGTGCCGGACACTGCGCTCCCTAGGGGTCCAGGTTTGCCGAGTCTCAGTTGTACCTGATGAGGTAGCCACCATTGCAGCTGAGGTCACTTCTTTCTCCAACCGCTTCACCCATGTCCTCACAGCAGGGGGCATCGGCCCCACTCATGATGATGTGACCTTTGAGGCAGTGGCACAGGCCTTT 3 1.36923399689291e-05 0.733356642258077 0.96295210983188 Y Y 3.66016945000958 3.4529352525482406 3.4529352525482406 0 0.995315260740068 0.0 Y 0.0 N Y 14687 5480 ENSG00000173207 ENSG00000160688 + - 1 1 154951725 154965587 coding coding CKS1B FLAD1 154947129 154955814 + + 0.0 154947388 154960581 + - N - 0.579263321893332 N SA470 4 0.0 3.19230769230769 2 26 4 N Y 0.0 0.0 26 0.595977919562947 1.07535146355923 1.07535146355923 0.595977919562947 4 - 29.2307692307692 0.925289088370611 HCT116-unstranded 10.0 381888 GGGTCGTGAGCTTTGGCCGCTGAGGGCACAAGGAATTAGTAACAGGAACTGAGGCGATAGAATTGGCGCATGCGTACGAGACATGTCATGCTGCCCAAGGACATAGCCAAGCTGGTCCCTAAAACCCATCTGATGTCTGAATCTGAATGGAGGAATCTTGGCGTTCAGCAGAGTCAGGGATGGGTCCATTATATGATCCATGAACC|AGGGACACACTCAGGACACCAACACCTTCTTTCTGTGCCGGACACTGCGCTCCCTAGGGGTCCAGGTTTGCCGAGTCTCAGTTGTACCTGATGAGGTAGCCACCATTGCAGCTGAGGTCACTTCTTTCTCCAACCGCTTCACCCATGTCCTCACAGCAGGGGGCATCGGCCCCACTCATGATGATGTGACCTTTGAGGCA 26 1.0 0.8909581154833149 0.361003754194776 Y Y 3.4816780663355296 3.40740634961144 3.40740634961144 1 0.995012285012285 0.0 Y 0.0 N Y 14687 5480 ENSG00000173207 ENSG00000160688 + - 1 1 154951725 154965587 coding coding CKS1B FLAD1 154947129 154955814 + + 0.0 154950590 154960581 + - N - 0.580095533230875 N SA470 8 0.0 4.35294117647059 1 10 4 N Y 0.0 0.0 17 1.22434594344997 1.3215162564221898 1.3215162564221898 1.22434594344997 4 - 44.3529411764706 0.9402105446717508 HCT116-unstranded 10.0 655806 GTGCAGGTTCGCAGCCCTGTCAACCAGCTCCGAGCCGGCAGCGAAACCTGAAGTGGACCCTGTGGAAAATGAAGCTGTCGCCCCAGAATTCACCAACCGGAACCCCCGGAACCTGGAGCTTTTATCTGTAGCCAGGAAAGAGCGGGGCTGGCGGACGGTGTTTCCCTCCCGTGAGTTCTGGCACAG|CTCTCCGGATAAAGACCAAATCAAGGTGGTGATTGACGAAGTGACGCGGTGGCTGGAGCTGGCCAAGGAAGGCGACTGGATGACTCTTCCTGGGATCACTGGTAGGCAGGGCCTGTTCCTCCCAACGCAGGAGCATTGGGACAGGTCACTGTCACCTGCCAGGAGTTGGGGGAAAC 4 0.921931702607519 0.409832119700562 0.0743610370915246 Y Y 3.46807512488172 3.66488952858494 3.46807512488172 0 0.0 0.0 Y 0.0 N Y 4200 102 ENSG00000112110 ENSG00000146453 + - 6 6 160219468 160241736 coding coding MRPL18 PNLDC1 160210844 160221301 + + 0.0 160212158 160227015 + - N - 0.371445676468765 N SA470 1 0.0 1.0 1 0 4 Y Y 0.0 0.0 6 1.0235272966407098 1.00409323404627 1.0235272966407098 1.00409323404627 4 - 1.5 0.98660755015233 HCT116-unstranded 10.0 655229 AGAAAAGGGTGCAGGTTCGCAGCCCTGTCAACCAGCTCCGAGCCGGCAGCGAAACCTGAAGTGGACCCTGTGGAAAATGAAGCTGTCGCCCCAGAATTCACCAACCGGAACCCCCGGAACCTGGAGCTTTTATCTGTAGCCAGGAAAGAGCGGGGCTGGCGGACGGTGTTTCCCTCCCGTGAGTTCTGGC|ACAGTGACTTGAATCCCACCAAGAATTCTGGACCAGAGATTGTTCACGCGAGCAGGTGTGAGAAATATGTTGAGACAAAGTGCCCCCACG 6 0.0766115546114237 0.788204163926828 0.61714702411419 Y Y 3.21063179870157 3.4952810077893504 3.21063179870157 0 0.0 0.0 Y 0.0 N Y 4200 102 ENSG00000112110 ENSG00000146453 + - 6 6 160219468 160241736 coding coding MRPL18 PNLDC1 160210844 160221301 + + 0.0 160212158 160237001 + - N - - N SA470 1 0.0 1.0 1 0 4 Y Y 0.0 0.0 8 0.699626253399981 0.913400941938865 0.913400941938865 0.699626253399981 4 - - 0.991240892989256 HCT116-unstranded 10.0 655807 TCCGAGCCGGCAGCGAAACCTGAAGTGGACCCTGTGGAAAATGAAGCTGTCGCCCCAGAATTCACCAACCGGAACCCCCGGAACCTGGAGCTTTTATCTGTAGCCAGGAAAGAGCGGGGCTGGCGGACGGTGTTTCCCTCCCGTGAGTTCTGGCACAGGT|ATATAGCCCATTCTTGTAACTTCTATCTCTTCCCTACAACGTTTGGGATTTTGGACTCAGAATTCTCCTTCCAGGCTTCCAGTGTTCAGTTTTTGAATCAGTATGGCTTCAACTATAACAAGGTATGG 4 0.26279965255872 0.954145849731894 0.5637371386518921 Y Y 3.42424163912411 3.33528047801382 3.33528047801382 0 0.0 0.0 Y 0.0 N Y 4200 102 ENSG00000112110 ENSG00000146453 + - 6 6 160219468 160241736 coding coding MRPL18 PNLDC1 160210844 160221301 + + 0.0 160212158 160224997 + - N - 0.124654525121815 N SA470 1 0.0 1.0 1 0 4 Y Y 0.0 0.0 6 0.829186670696274 0.72553833685924 0.829186670696274 0.72553833685924 4 - 0.666666666666667 0.993049012416119 HCT116-unstranded 10.0 731334 CCAGGAGTGCAACCTGGGAAAGGATAAACTGCTCCTCTGCTAGGATGAATTGCAGCTTAGAGGCATCAGGTATGGCAATGCGGTCGATGTACTCAGGATCCAGGTACTTGATCAGATCTTCAATCTTTTTGTAGAGAATCTTCACCCTCTCCCTCTTGCTGGAAATGTTCCCCAAAGCCACCTGCACCTTGACCAGGCCGTCAGCCACCT|GCTTGAATTGTTCCTCGTAGGTCCACTCGTGGGGATGGAGTCCAGGGGGCTGGCTAGAAGGCGAGCTGGGGCCCTGGGCCCCTGGACGGCTCTCCTCAGCTGCCTCCTCCTCTGCCCCGGCTTCCTCCCGCTTCTCCTCATCTTCTTCAGCATCTTCCTCTTCCTCAGCCCCAACATTCCCCAAGGCCCCCTCAGGGGCCTGTAGG 37 0.938885638782598 0.8197723873590559 0.6312627321311899 Y Y 3.29590595100639 3.75847748231474 3.29590595100639 0 0.0 0.0 Y 0.0169262648133921 N Y 4381 53 ENSG00000137100 ENSG00000205143 - + 9 9 34620515 34628104 coding coding DCTN3 ARID3C 34613548 34621376 - - 0.0 34618757 34627694 + - N - 0.282107925363958 N SA470 1 0.344036697247706 1.0 1 0 1 Y Y 0.0 0.344036697247706 29 1.27617011036848 1.41220854852959 1.41220854852959 1.27617011036848 4 - 0.275862068965517 0.9934295473671392 HCT116-unstranded 10.0 1098221 ATCTTTGCTGATGTGGCCCAGCCAGACCAGACCCGGATTGTGGCCCTGAATGCCCACACCTTCCTGCGTAATGGAGGACACTTTGTGATTTCCATTAAGGCCAACTGCATTGACTCCACAGCCTCAGCCGAGGCCGTGTTTGCCTCCGAAGTGAAAAAGATGCAACAGGAGAACATGAAGCCGCAGGAGCAGTTGACCCTTGAGCCATATGAAAGAGACCATGCCGTGGTCGTGGGAGTGTACAGG|TATTGCCTGATGTGCGGCTACTGCCTCGGAGGCTGCCCCTGGCCTTCCGGGATGCAACCTCAGCCCCGCTGCGTAAGCTCTCTGTGGACCTCATCAAGACCTACAAGCACATCAATGAGGTATACTATGCGA 44 0.308631083879066 0.6414881916410871 0.5021251515756621 Y Y 3.50848272165904 3.4246428667082296 3.4246428667082296 0 0.0 0.0 Y 0.0 N Y 34026 2368 ENSG00000105202 ENSG00000105204 + - 19 19 40337054 40324841 coding coding FBL DYRK1B 40325094 40315993 - - 0.0 40325308 40321423 - + N - - N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 11 0.7579284411833129 0.7708844829129431 0.7708844829129431 0.7579284411833129 4 - - 0.96749707914466 HCT116-unstranded 10.0 1098220 ATCTTTGCTGATGTGGCCCAGCCAGACCAGACCCGGATTGTGGCCCTGAATGCCCACACCTTCCTGCGTAATGGAGGACACTTTGTGATTTCCATTAAGGCCAACTGCATTGACTCCACAGCCTCAGCCGAGGCCGTGTTTGCCTCCGAAGTGAAAAAGATGCAACAGGAGAACATGAAGCCGCAGGAGCAGTTGACCCTTGAGCCATATGAAAGAGACCATGCCGTGGTCGTGGGAGTGTACAGG|TATTGCCTGATGTGCGGCTACTGCCTCGGAGGCTGCCCCTGGCCTTCCGGGATGCAACCTCAGCCCCGCTGCGTAAGCTCTCTGTGGACCTCATCAAGACCTACAAGCACATCAATGAGGTATACTATGCGAAGAAGAAGCGGCGGGCCCAGCAGGCGCCACCCCAGGATTCGAGCAACAAGAAGGAGAAGAAGGTCCTGAACCATGGTTATGATGACGACAACCATGACTACATCGTGCGCAGTG 44 1.24720567144084e-07 0.6414881916410871 0.5021251515756621 Y Y 3.50848272165904 3.4246428667082296 3.4246428667082296 0 0.0 0.0 Y 0.0 N Y 34026 2368 ENSG00000105202 ENSG00000105204 + - 19 19 40337054 40324841 coding coding FBL DYRK1B 40325094 40315993 - - 0.0 40325308 40321423 - + N - - N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 6 0.855098754155533 0.64132406561665 0.855098754155533 0.64132406561665 4 - - 0.953426923891888 HCT116-unstranded 10.0 793586 ATAAATCACTGATACTCACGTTCCACCTCTGTCTCTCCTCAGAGTGCCTTGAGACACTCTGGCCCATTGCCTCTCCTCTTTGTCATCCCACATCCTCCACCACGATCTCCACAGGGTACCAGGGGACCCCAGGACAAGTGCT|TTCTGCAGGGAGCAAGGGTCCAGAGCAGATATGGACCCCTCTGCACAGGCCTCCCGAAGTCCTGAAGCTGGGCGGCAGTGAGGTGTCACCCCCCTCCAGCTGAGGAGACCAGGCCCAGTGGCAGGGGTTTCTCTGTCTGTCCGTGGGCAGAGCCCGCGTCTGGTCCAGA 9 0.552656421443562 0.995923209576945 0.663845871931804 Y Y 3.48487056160104 3.5000010863647097 3.48487056160104 0 0.0 0.0 Y 0.0 N N 74 319 ENSG00000161798 ENSG00000086159 + - 12 12 50359434 50370922 downstream intron AQP5 AQP6 50355653 50360977 + + 0.0 50359588 50367920 + - N - 1.78022998336051 N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 6 0.686670211670352 0.6283680238870201 0.686670211670352 0.6283680238870201 4 - 0 0.985473616323782 HCT116-unstranded 10.0 733636 AGCATGCCCTTCACTGCAGTGTCAGGCCTTTAGATGGGACCCAGCGAAAATGTGGCCCTTCTGAGTCACATCACCGACACTGAGCAGTGGAAAGGGGCTATATGTGTATGAATAGACCACATTGAAGGAGCACAATGCCCTCCTGTGTTGATGCCACTTCCCAGGGTGGAGACAGTGGAAAAGAACCGAGGACAGGAAAGGATTGG|ATGTTTGGCTGTGGCTCCGTGGCCCAGGTTGTGCTCAGCCGGGGCACCCACGGTGGTTTCCTCACCATCAACCTGGCCTTTGGCTTTGCTGTCACTCTGGGCATCCTCATCGCTGGCCAGGTCTCTGGGGCCCACCTGAACCCTGCCGTGACCTTTGCCA 5 1.0 0.877290894915488 0.24196265975668 Y Y 3.1033476175621098 3.2610087612897303 3.1033476175621098 1 0.0 0.0 Y 0.0 N N 15238 1327 ENSG00000165271 ENSG00000165272 + - 9 9 33473928 33447609 utr3p coding NOL6 AQP3 33461439 33441152 - - 0.0 33462038 33443890 - + N - - N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 6 1.09478552615367 0.7644064620481279 1.09478552615367 0.7644064620481279 4 - - 0.975403568174282 HCT116-unstranded 10.0 729489 CAGCGCGCCAGCAGGATGGCCCACAAGCAGATCTACTACTCGGACAAGTACTTCGACGAACACTACGAGTACCGGCATGTTATGTTACCCAGAGAACTTTCCAAACAAGTACCTAAAACTCATCTGATGTCTGAAGAGGAGTGGAGGAGACTTGGTGTCCAACAGAGTCTAGGCTGGGTTCATTACATGATTCATGAGCCA|GGCAGAAAATATATACTGAAGACATGGCCTTTGGAGCTTCAACTTTTCCACCTCAGTATTTATCTTCTGAGATAACTCTTCATCCATATGCCTATTCTCCTTATACCCTTGACTCCACACAGAATGTTTACTCAGTGCCTGGCTCCCAGTATCTTTATAACCAACCCAGTTGTTACCGAGGTTTTCAAACAGTGAAGCATCGAA 14 1.0 0.6579802482993821 0.5773688719398571 Y Y 3.64656650855576 3.59681204058356 3.59681204058356 0 0.0 0.0 Y 0.0 N Y 7293 2848 ENSG00000123975 ENSG00000187742 + - 9 9 91931618 91974557 coding intron CKS2 SECISBP2 91926113 91933421 + + 0.0 91930212 91940342 + - N - 0.357180666435266 N SA470 2 0.0 1.58823529411765 1 10 2 Y Y 0.0 0.0 17 1.29560417296293 1.2826481312333 1.29560417296293 1.2826481312333 4 - 9.11764705882353 0.950091080360378 HCT116-unstranded 10.0 729490 TGTTGCCTGGGCTGGACGTGGTTTTGTCTGCTGCGCCCGCTCTTCGCGCTCTCGTTTCATTTTCTGCAGCGCGCCAGCAGGATGGCCCACAAGCAGATCTACTACTCGGACAAGTACTTCGACGAACACTACGAGTACCGGCATGTTATGTTACCCAGAGAACTTTCCAAACAAGTACCTAAAACTCATCTGATGTCTGAAGAGGAGTGGAGGAGACTTGGTGTCCAACAGAGTCTAGGCTGGGTTCATTACATGATTCATGAGCCA|GGCAGAAAATATATACTGAAGACATGGCCTTTGGAGCTTCAACTTTTCCACCTCAGTATTTATCTTCTGAGATAACTCTTCATCCATATGCCTATTCTCCTTATACCCTTGACTCCACACAGAATGTTTACTCAGTGCCTGGCTCCCAGTATCTTTATAACCAACCCAGTTGTTACCGAGGTTTTCAAACAGTGAAGCATCGAAATGAGAACACATGCCCTCTCCCACAAGAAATGAAAGC 14 1.38561128342972e-05 0.6579802482993821 0.5773688719398571 Y Y 3.64656650855576 3.59681204058356 3.59681204058356 0 0.0 0.0 Y 0.0 N Y 7293 2848 ENSG00000123975 ENSG00000187742 + - 9 9 91931618 91974557 coding intron CKS2 SECISBP2 91926113 91933421 + + 0.0 91930212 91940342 + - N - 0.357180666435266 N SA470 2 0.0 1.14285714285714 1 1 2 Y Y 0.0 0.0 7 1.36038438161107 0.997615213181455 1.36038438161107 0.997615213181455 4 - 22.1428571428571 0.97550247946169 HCT116-unstranded 10.0 615942 ATGTGTGCTGGTTTACATGACTCCAGAGCAGTCCGCAAACCTCCTGAAGTGGGCAGCCAACAGTTTTGAGAGAGCCATGTTCATAAACTACGAACAGGTGAACATGGGTGATCGGTTTGGGCAGATCATGATTGAAAACCTGCGGAGACGCCAGTGTGACCTGGCGGGAGTGGAGACCTGCAAGTCATTAGAGTCACAG|ATAGCCATGTGTGAGCCTGAATTTGGCAATGACAAGGCCAGGGAGCCGAGCGTGGGTGGCAGGTGGCGAGTGTCCTGGTACGAACGGTTTGTGCAGCCATGTCTGGTCGAACTGCTGGGCTCTGCTCTCTTCATCTTCATCGGGTGCCTGTCGGTCATTGAGAATGGGACGGACACTGGGCTGCTGCAGCCGGCCCTGGCCCACGGGCTGGCTTTGGGGCTCGTGATTGCCACGCTGGGGAATA 10 0.954600958030017 0.7787400423414351 0.7181468118147559 N Y 3.71976530271662 3.5465630590714 3.5465630590714 0 0.0 0.0 Y 0.0 N Y 1532 202 ENSG00000205629 ENSG00000103375 + - 16 16 25189552 25240261 coding coding LCMT1 AQP8 25123050 25227052 + + 0.0 25180534 25228519 + - N - 0.0389925629616582 N SA470 1 0.0 1.0 1 0 3 Y N 0.0 0.0 9 1.27617011036848 1.54176896582589 1.54176896582589 1.27617011036848 4 - 0.111111111111111 0.994848257334812 HCT116-unstranded 10.0 614041 TGATAGCTGAATGTGTGCTGGTTTACATGACTCCAGAGCAGTCCGCAAACCTCCTGAAGTGGGCAGCCAACAGTTTTGAGAGAGCCATGTTCATAAACTACGAA|CAGTGGTGGACACTTCAACCCTGCGGTGTCCCTGGCAGCCATGCTGATCGGAGGCCTCAACCTGGTGATGCTCCTCCCGTACTGGGTCTCACAGCTGCTCGGGGGGATGCTCGGGGCTGCCTTGGCCAAGGCGGTGAGTCCTGAGGAGAGGTTCTGGAATGCATCTGGGGCGGCCTTTGTGACAGTCCAGGAGCAGGGGCAGGTGGCAGGGGCGTTGGTGGCAGAGATCATCCTGACGACGCTGCTGGCCCTGGCTGTATGCATGGGTGCCATC 1 0.440845848982779 0.759467704316953 0.8450714846585029 N Y 3.63296356710195 3.5110433747387795 3.5110433747387795 0 0.0 0.0 Y 0.0 N Y 1532 202 ENSG00000205629 ENSG00000103375 + - 16 16 25189552 25240261 coding coding LCMT1 AQP8 25123050 25227052 + + 0.0 25176039 25232778 + - N - - N SA470 1 0.0 1.0 1 0 3 N N 0.0 0.0 6 1.09478552615367 0.958747087992567 1.09478552615367 0.958747087992567 4 - - 0.990466625190776 HCT116-unstranded 10.0 614040 CCGCAAACCTCCTGAAGTGGGCAGCCAACAGTTTTGAGAGAGCCATGTTCATAAACTACGAACAGGTGAACATGGGTGATCGGTTTGGGCAGATCATGATTGAAAACCTGCGGAGACGCCAGTGTGACCTGGCGGGAGTGGAGACCTGCAAGTCATTAGAGTCACAGG|GGCCCTGTGTCTGGAGGCTGCATGAATCCCGCCCGTGCTTTTGGACCTGCGGTGGTGGCCAACCACTGGAACTTCCACTGGATCTACTGGCTGGGCCCACTCCTGGCTGGCCTGCTTGTTGGACTGCTCATTAGGTGCTTCATTGGAGATGGGAAGACCCGCCTCATCCTGAAGGCTCGGTGAAGCAGAGCTCGTGGGATTCCTGCTGCTCCAGGTGTCCTCAGCTCACCTGTCCCAGACTGAGGACAGGGGAGTTCCTGCATTTCCTGCCAGGGCAGAGGCCCAGAGGAGCGACCCCCTGCTTCCACTGCTTGGGCCTGCTT 4 2.6624576722814397e-07 0.5914869677936619 0.7648628104871291 N Y 3.68783934123363 3.40744620240479 3.40744620240479 0 0.0 0.00797280294231495 Y 0.00203252032520329 N Y 1532 202 ENSG00000205629 ENSG00000103375 + - 16 16 25189552 25240261 coding coding LCMT1 AQP8 25123050 25227052 + + 0.0 25180534 25238389 + - N - - N SA470 1 0.0 1.0 1 0 3 Y N 0.0 0.0 6 1.05591740096479 0.667236149075908 1.05591740096479 0.667236149075908 4 - - 0.991240892989256 HCT116-unstranded 10.0 369533 CTTTGGCAGAAAGAAGAAGAGTAAGAATCATGCCCAGGAGAGGGATGAGGTCTCCGGTTTGGTGAGCGGCCTCATGCGCACATCCGTTGGCCATCAGGATGCCAGGCCAGAGGCTCCAGCAGCTTCTGGCCCAGCCCCTGTCAGCCTGGTAGAGACAGCACCTGAAGACAGCTCACCCCGTGGGACACTGGCAAGCAGTGGAGATGG|TGGCCGTAACCTTTGGCCTGGGGCAGCTGCAGGAGCGCTGCGTGGCTTTCATAGAGGCCCACAGCCAGGTACTGCTCCCTTCATACTCCTCACCCTACGCACCGCATTCTGCTCCTCCCTGACCCATTTGCCGGCTCGCAGGAGGCCCTCCGGACCCGAGGCTTCCTGGAGCTGTCGGCGGCCGCGCTGCTGCCCCTGCTCCGCAGCGACAAGCTCTGCGTGGACGAG 6 0.12923108858977805 0.470852748760685 0.4290482331961261 Y Y 3.49847350305486 3.3635728638538303 3.3635728638538303 1 0.0 0.0 Y 0.0 N Y 3119 460 ENSG00000173846 ENSG00000222009 + - 1 1 45271662 45281257 coding coding PLK3 BTBD19 45265897 45274154 + + 0.0 45269696 45278668 + - N - 1.16012126117325 N SA470 1 0.0 1.0 1 0 2 N Y 0.0 0.0 13 1.2373019851796 1.3150382355573702 1.3150382355573702 1.2373019851796 4 - 1.76923076923077 0.977585789729135 HCT116-unstranded 10.0 374174 GGGAGCCCTCCCTTTGAGACGGCTGACCTGAAGGAGACGTACCGCTGCATCAAGCAGGTTCACTACACGCTGCCTGCCAGCCTCTCACTGCCTGCCCGGCAGCTCCTGGCCGCCATCCTTCGGGCCTCACCCCGAGACCGCCCCTCTATTGACCAGATCCTGCGCCATGACTTCTTTACCA|AGGTGGCCGTAACCTTTGGCCTGGGGCAGCTGCAGGAGCGCTGCGTGGCTTTCATAGAGGCCCACAGCCAGGTACTGCTCCCTTCATACTCCTCACCCTACGCACCGCATTCTGCTCCTCCCTGACCCATTTGCCGGCTCGCAGGAGGCCCTCCGGACCCGAGGCTTCCTGGAGCTGTCGGCGGCCGCGCTGCTGCCCCTGCTCCGCAGCGACAAGCTCTGC 6 1.0 0.7343582380733641 0.8946393759045859 Y Y 3.46298432394578 3.41103992525442 3.41103992525442 0 0.0 0.0 Y 0.0 N Y 3119 460 ENSG00000173846 ENSG00000222009 + - 1 1 45271662 45281257 coding intron PLK3 BTBD19 45265897 45274154 + + 0.0 45268825 45278668 + - N - 1.16155073654268 N SA470 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 20 1.1919558391258898 1.2373019851796 1.2373019851796 1.1919558391258898 4 - 1.15 0.9921004685957132 HCT116-unstranded 10.0 732885 GTTGGCTCAGGATGCACTGGAAGGGCTCAGAGGGCTCCTCCATAGTCTGCAAGGGCTCCCTGCAGCTGTTCCTGTTCTTCCCTTGGAGCTGACTGTCACCTGCAACTTCATTATCCTGAGGGCAAGCTTGGCCCAGGGTTTCACAGAGGATCAGGCCCAGGATATCCAGCGGAGCCTAGAGAGA|GTTCAAAAGGTGATGACCTATCAACAGCCATTCTCAAACAGAAGAACCGTCCCAATCGGTTAATTGTTGATGAAGCCATCAATGAGGACAACAGTGTGGTGTCCTTGTCCCAGCCCAAGATGGATGAATTGCAGTTGTTCCGAGGTGACACAGTGT 2 0.928161223811952 0.441394935549635 0.716907133644677 Y Y 3.1191006369417296 3.6035982586987 3.1191006369417296 0 0.9936085419956392 0.0 Y 0.0 N Y 3211 44176 ENSG00000221829 ENSG00000165280 + - 9 9 35080013 35073246 coding utr5p FANCG VCP 35073832 35056061 - - 0.0 35078602 35068359 - + N - - N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 9 0.8486207332907181 0.615411982157391 0.8486207332907181 0.615411982157391 4 - - 0.982687126240132 HCT116-unstranded CGHSA0717 10.0 914207 ACAGACTCTTATCGATTATGCATCAGATATTGGGCGTGTACCAGATTTTATCCTGGAAAAGATACCAGCCATGTTGGGTATTGATGGTCTCTGTGCTACTCCATCACTGGAAGGCTTTGAAGAAGGTGAATATGAAACTCCTGGTGAATATAAGAGAAAGAGAAGACAAAGTGTAGGAG|GTTGACAATGGTCTCCAGGATGGTCTCTACCATGCTATCTGGCCTACTGTTTTGGCTGGCATCTGGATGGACTCCAGCATTTGCTTACAGCCCCCGGACCCCTGACCGGGTCTCAGAAGCAGATATCCAGAGGCTGCTTCATGGTGTTATGGAGCAATTGGGCATTGCCAGGCCCCGAGTGGAATATC 54 0.8855774937580531 0.609626394178459 0.7096943499748192 Y Y 3.12907935032238 3.70889084821189 3.12907935032238 0 0.0 0.0 Y 0.0 N Y 14337 357 ENSG00000198826 ENSG00000166922 + - 15 15 32932150 32989299 coding utr5p ARHGAP11A SCG5 32907345 32933877 + + 0.0 32917834 32935787 + - N - 0.0914707926782174 N SA470 2 0.0 1.8723404255319096 1 41 2 N Y 0.0 0.0 47 1.2826481312333 1.24378000604441 1.2826481312333 1.24378000604441 4 - 0.0425531914893617 0.9177484090119808 HCT116-unstranded 10.0 914764 AACATTCCTAAGGACTTTAGTGAGGATCAGGGGTACCCAGACCCTCCAAATCCCTGTCCTGTTGGAAAAACAGCAGATGATGGATGTCTAGAAAACACCCCTGACACTGCAGAGTTCAGTCGAGAGTTCCAGTTGCACCAGCATCTCTTTGATCCGGAACATGACTATCCAGGCTTGGGCAAGTGG|TATGAGCCGCACAGCCTACACGGTGGGAGCCCTGCTTCTCCTCTTGGGGACCCTGCTGCCGGCTGCTGAAGGGAAAAAGAAAGGGTCCCAAGGTGCCATCCCCCCGCCAGACAAGGCCCAGCACAATGACTCAGAGCAGACTCAGTCGCCCCAGCAGCCTGGCTC 6 0.955225553756908 0.42028649287780107 0.34923071765096503 Y Y 3.7574444125448494 3.64553343878587 3.64553343878587 0 0.0 0.0 Y 0.0 N Y 357 260 ENSG00000166922 ENSG00000166923 + - 15 15 32989299 33026870 coding utr5p SCG5 GREM1 32933877 33010175 + + 0.0 32976870 33022891 + - N - 0.0926223214908913 N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 5 1.17899979739626 0.984659171451826 1.17899979739626 0.984659171451826 4 - 0 0.9815200603597192 HCT116-unstranded 10.0 108303 AAAGAACTGTAGATCTTTGTCAAAAGGCTGAAGCAACAGGAGTTTCATGGATTACAGTCCATGGAAGAACTGCTGAAGAAAGACATCAGCCAGTGCACTATGATTCCATTAAAATAATTAAGGAAAATATGTCTATACCTGTAATTGCTAATGGAGACATCAGAAGCTTAAAGGAAGCAGAAAATGTGTGGCGGATTACTGGGACAGATG|CCCATGGACGGGAACGGGAACGCCTACGGAATATGTTGTGACATACAGTTGATCCTAGGTTCTCCAGAACAAAATGCTGCACGACCACCTCATCCTGGCCCTTTATTAAATATAGCTTAATTCTGGACACAAACAGTTCCCACCATGAAGAGAGAGTAGGTGACCGGAAAGGAGTGCGTCTTAAGCGCGTTCGCTGAATTTGCACCACCCAATCCAGCCCCG 17 1.0 0.801229731214797 0.789789802018184 Y Y 3.47655676017605 3.4555052531978 3.4555052531978 0 0.0 0.0 Y 0.0 N N 282 2362 ENSG00000105865 ENSG00000075790 + - 7 7 107218906 107269615 coding upstream DUS4L BCAP29 107203929 107220422 + + 0.0 107217037 107220181 + - N 0.709626588140383 - N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 21 1.3150382355573702 1.36686240247589 1.36686240247589 1.3150382355573702 4 2.14285714285714 - 0.992455626252426 HCT116-unstranded 10.0 294930 GTGTGTGATTTGTGACTCCTATGTGCGTCCCTGCACTCTGGTGCGCATATGTGATGAGTGTAACTATGGATCTTACCAGGGGCGCTGTGTGATCTGTGGAGGACCTGGGGTCTCTGATGCCTATTATTGTAAGGAGTGCACCATCCAGGAGAAGGAC|AGCCGCCTGGAGCCCAAGGCTGTACACGTGCCCTGTGCTGATTCTCTGCCTAGGAAAGGACCATGCAGCTAGAGATCAAAGTGGCCCTGAACTTCATCATCTCCTACTTGTACAACAAGCTGCCCCGGCGCCGGGCAGACCTGTTTGGGGAGGAGCTAGAGCGGCTTTTGAAAAAGAAATATGAAGGCCACTGGTACCCTGAGAAGCC 26 0.9974482500636752 0.8088396328687191 0.344887523852499 Y Y 3.79465951405667 3.35975787397237 3.35975787397237 0 0.0 0.0 Y 0.0 N Y 9563 10643 ENSG00000100410 ENSG00000183864 + - 22 22 41864729 41843027 coding utr5p PHF5A TOB2 41855721 41829496 - - 0.0 41863452 41833411 - + N - - N SA470 4 0.0 1.68181818181818 1 10 1 N Y 0.0 0.0 22 1.05591740096479 1.25673604777404 1.25673604777404 1.05591740096479 4 - - 0.9231003765429208 HCT116-unstranded 10.0 164195 CAGCCTATTGAGATGACTGTAAAAAAAACCTTATCCAATTTCCGAAGGACTCACCATGACAACTGGCAGGAACATAAACAGCAATTCACTGATGACCAACTGCTTGTTCTCACCGATCTTCTTGTGTCACCATGCTATTATGCATAGAAAG|GTTTTGGCTATTTCAGGGAGCTTGAGTTCCCCAAACAGCAAAACTGCGAGCCTGAAAAACCTGGCTCAAGCGCCCCTCGTGAGGCGGGCAGCGGGAGTGGCCGGGCTCTGGGCCCCAGGAGGCAGGCGACGGAGGCGCGGAGGGTGCGGGGCGCAGGCGGGACGCCAGGCCCGGGTGTCCGGCGGAGGGGGCGGTGCCCTCGGCGTCTCCGTGACTGCGCCTCTGCGCCCGCGTC 13 1.0 0.677493064169614 0.14743589473848998 Y Y 3.7297745213208 3.4189524990952904 3.4189524990952904 0 0.0 0.0 Y 0.0 N N 7054 1123 ENSG00000068878 ENSG00000115239 + - 2 2 54197977 54087297 utr3p upstream PSME4 ASB3 54091204 53759810 - - 0.0 54093222 54087336 - + N - - N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 15 0.939313025398123 1.47051073631292 1.47051073631292 0.939313025398123 4 - - 0.981554313748411 HCT116-unstranded 10.0 383289 CACTACTGGGTGTGAAGGGGGATGGCAAATCCAAGAAGAAGCAAGCAGGCCGGCCTAAAGGATCAAAAGGTAAAGAGAAAGATTCTCCATTTAAACCGAAACTCTACAAAGGGGACAGAGGTTTACCTCTGGAAGGATCAGCGAAGGGTAAAGTGCAGGCGGAACTCAGCCAGCCCTTGACAG|GATATCTCATGTCAAAGGAATCAAGTTATGATTTATAGAGGATTCAGCTGGAATACCTTGTGGGTGCTGGCTGAGGGTGGCAAAACGCCTACCGAGACATGAAGGTTTTAGCCACTAGTTTTGTCCTTGGGAGCCTGGGGTTGGCCTTCTACCTG 26 0.8412941689044559 0.315385671126585 0.322791890116667 Y Y 3.51935717616377 3.29227237536341 3.29227237536341 0 0.0 0.0 Y 0.0 N N 1049 337 ENSG00000117222 ENSG00000174529 + - 1 1 205091143 205053645 coding intron RBBP5 TMEM81 205055270 205052258 - - 0.0 205064001 205053546 - + N - - N SA470 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 19 1.10126354701849 1.0235272966407098 1.10126354701849 1.0235272966407098 4 - - 0.9679438434903148 HCT116-unstranded 10.0 731906 CTTGAGCTTGTCGATAAGGAGAGGTTTGCAGATGTACTCCTGGACCACCGCTGGCCTGCTCTGGAGGGTCCCTGCCAGGCGGATGTCACTGGGGTCTTTAATGAGGTAGATTCCATCACCCTGACAACCACCATCAGGTTTCACGATAAAAGTGGGCTTCCAGGAGGGGTCATCGTCTTTCACCATTTGAA|CCTTTGACAGTTCTCCCAGGTCAGGCCGCACCCAGCCCAGTTTGTCCAGCACACACTCGTCAAACTTTGCCTGCTGTTTGCGACAGTGACGAAATAACTGCTGGCCAGTATAATCAATGCAAGTCCAATATTCTGTAAAAGGCTCTGCACAGTGACGTTTTATCTGCC 3 1.0 0.860133563416507 0.938385565576966 N Y 3.48383749183115 3.25000632570901 3.25000632570901 1 0.0 0.0 Y 0.0 N Y 143 5436 ENSG00000175764 ENSG00000119421 - + 9 9 124855885 124922098 coding intron TTLL11 NDUFA8 124584207 124894745 - - 0.0 124752049 124910391 + - N - 0.307547371735361 N SA470 1 0.0 1.0 1 0 1 N N 0.0 0.0 8 0.7449723994536841 1.13365365134256 1.13365365134256 0.7449723994536841 4 - 277.25 0.991157737720567 HCT116-unstranded 10.0 6381 CCTTTTGGCCAGGTTAGGGAGGGGGCGACGCTGAGATGGGGGCGGCGGCGGCGGAAGCGGATCGCACTCTCTTTGTGGGCAACCTTGAAACGAAAGTGACCGAGGAGCTCCTTTTCGAGCTTTTCCACC|AGGGCACTTGATGACATTAGTGAAAGCATCAAAGAGCTTCAGTTTTACCGAAATAACATCTTCAAGAAAAAAATAGATGAAAAGAAGAGGAAAATTATAGAAAATGGGGAAAATGAGAAGACCGTGAGTTGATGCCAGTTATCATGCTGCCACTACATCGTTATCTGGA 3 0.430479258042724 0.663821668100057 0.606084631643272 Y Y 3.4268022922038504 3.4780843434859 3.4268022922038504 0 0.992273988229499 0.0 Y 0.0 N Y 1978 3010 ENSG00000076053 ENSG00000076043 + - 11 11 114284925 114321001 coding coding RBM7 REXO2 114270752 114310108 + + 0.0 114271489 114320568 + - N - - N SA470 2 0.0 1.125 1 1 1 Y Y 0.0 0.0 8 0.686670211670352 0.9198789628036792 0.9198789628036792 0.686670211670352 4 - - 0.9772535572327952 HCT116-unstranded CGHSA0393 10.0 1136722 CGTGACCGCAGCCCCAGCGCGGCGGGGCCGGCGTCTCCTGGCTGCCGTCACTTCCGGTTCTCTGTCAGTCGCGAGCGAACGACCAAGAGGGTGTTCGACTGCTAGAGCCGAGCGAAGC|GAATTAGAAGCTCCTACTTAACAGTGAAGATTTCGGGATCACAGTGCATAATCTGAATATAAATGACCCAGAAGCTGAAACATTACCCATAATCACATTGACGGTTCCAGAAAGAGCGATAAGGAGAGTGCTGTTAAGGGAGGCGAGCGCTGACGCCAGAAGTTGCCATATCCCCAGAAACCCCAGTTTGCCTTTTCACCGTCGCAAGTGA 24 0.500566976192391 0.515085051305632 0.8977990568977899 N Y 3.56591914887046 3.64553343878587 3.56591914887046 0 0.0 0.0 Y 0.0 N N 15810 1310 ENSG00000113387 ENSG00000113389 + - 5 5 32604185 32791819 utr5p utr5p SUB1 NPR3 32531739 32689176 + + 0.0 32585731 32709712 + - N - - N SA470 1 0.0 1.0 1 0 2 N N 0.0 0.0 10 0.615411982157391 0.8097526081018299 0.8097526081018299 0.615411982157391 4 - - 0.9921004685957132 HCT116-unstranded 10.0 1136969 CGTAATCCTCCATATTGAGCCCTTGTTTCTCAACTGAACTTTTCACCTCCATGGAAAACTTCTCAAACTCAGGTTTCACTGTCCTCAGTAGAGTGACTGTCTGGAGGGACGAGTATGCTTGCTTAGCTTCAAAGTCGTGTTTGTCTCCTCTCTTCCATGAGCCATCTC|GCTTCGCTCGGCTCTAGCAGTCGAACACCCTCTTGGTCGTTCGCTCGCGACTGACAGAGAACCGGAAGTGACGGCAGCCAGGAGACGCCGGCCCCGCCGCGCTGGGGCT 4 0.107499225214112 0.3378826955622619 0.7648628104871291 N Y 3.26041677189731 3.56591914887046 3.26041677189731 0 0.0 0.0 Y 0.0 N Y 1310 15810 ENSG00000113389 ENSG00000113387 - + 5 5 32791819 32604185 coding utr5p NPR3 SUB1 32689176 32531739 + + 0.0 32738970 32585731 - + N - 1.11681901739583 N SA470 1 0.0 1.0 1 0 2 N N 0.0 0.0 6 0.82270864983146 0.5052856274555421 0.82270864983146 0.5052856274555421 4 - 669 0.981431150834053 HCT116-unstranded 10.0 693481 GCGGACCGGCGTCCCCGGCGCGAAGAGGCTGGACTCGGATTCGTTGCCTGAGCAATGGCTGCCATCCGGAAGAAACTGGTGATTGTTGGTGATGGAGCCTGTGGAAAGACATGCTTGCTCATAGTCTTCAGCAAGGACCAGTTCCCAGAGGTGTATGTGCCCACAGTGTTTGAGAACTATGTGGCAGATATCGAGGTGGATGGAAAGC|AGGAGAACGCCAAGAACGAAGAGATTCTGAATTCCCTCAAGTACGTCCGGCCTGGTGGTGGGTTCGAGCCCAACTTCATGCTCTTCGAGAAGTGCGAGGTGAACGGTGCGGGGGCGCACCCTCTCTTCGCCTTCCTGCGGGAGGCCCTGCCAGCTCCCAGCGACGACGCCACCGCGCTTATGACCGACCCCAAGCTCATCACCTGGTCTCCGGTGTGTCG 42 1.0 0.784906793962952 0.557504605191843 Y Y 3.49847350305486 3.46973068926756 3.46973068926756 0 0.0 0.0 Y 0.00233100233100225 N Y 99570 50456 ENSG00000067560 ENSG00000233276 + - 3 3 49450431 49396033 coding utr3p RHOA GPX1 49396578 49394609 - - 0.0 49412867 49395180 - + N - - N SA470 3 0.0 2.2051282051282097 1 34 1 Y Y 0.0 0.0 39 1.35390636074626 1.41868656939441 1.41868656939441 1.35390636074626 4 - - 0.9271585651851908 HCT116-unstranded 10.0 796100 GCCGTGCTCGGCGGCCTCTCGCAGACCGACCCCAGGGCCGGCGGCGGCGGCGGCGGCGACTACGGACTGGTGACGGCCGGCTGCGGCTTCGGGAAGGACTTCCGTAAGGGCCTCCTCAAGAAGGGCGCGTGCTACGGGGACGACGCGTGCTTCGTGGCCCGGCACCGTTCCGCGGACGTG|CTCGAGCACCTACTGTGCCACCATGGTCCAGCACTGTGAAGCCCTCAACCGGTCTGTCCAAGTTGTAAACCTGGATCCAGCAGCAGAACACTTCAACTACTCCGTGATGGCTGACATCCGGGAACTGATCGAGGTGGATGATGTAATGGAGGATGATTCTCTGCGATTCGGTCCCAACGGAGGATTGG 8 0.6779207988502671 0.8131696160011209 0.863568398985043 Y Y 3.2740197133511297 3.6769648867289 3.2740197133511297 2 0.0 0.00271002710027102 Y 0.00271002710027102 N Y 7122 2409 ENSG00000196850 ENSG00000111231 + - 12 12 111021125 110907019 coding coding PPTC7 GPN3 110969120 110890289 - - 0.0 111020614 110903019 - + N - - N SA470 2 0.112359550561798 1.2 1 1 1 N Y 0.112359550561798 0.0 5 1.0623954218296 1.08182948442405 1.08182948442405 1.0623954218296 4 - - 0.9272198246090728 HCT116-unstranded 10.0 540848 TTCCTTGTATCGTCATTCCAGTTCTGCTCTGGATCTACAAAAAATTCCTGGAGCCATATATATACCCTCTGGTTTCCCCCTTCGTTAGTCGTATATGGCCTAAGAAAGCAATACAAGAATCCAATGATACAAACAAAGGCAAAGTAAACTTTA|AGGTTGTCTTTTGGAAATGCAGGTTTAAGGACAAATTATCTGCTTAAGCTAGAAGATGGGATCGAATAGCAGCAGAATCGGCGATCTTCCTAAAAATGAGTACTTGAAAAAGTTATCAGGCACGGAATCTATCTCTGAGAATGACCCGTTCTGGAATCAGCT 4 0.7248842803596859 0.490184179689511 0.5794807238940799 N Y 3.26725642317494 3.42576922243396 3.26725642317494 1 0.0 0.0 Y 0.0 N Y 3566 1919 ENSG00000177576 ENSG00000141627 + - 18 18 47013622 46987717 coding utr5p C18orf32 DYM 47008028 46570039 - - 0.0 47009954 46956817 - + N - - N SA470 1 0.0 1.0 1 0 1 N N 0.0 0.0 6 0.8939668793444209 0.900444900209235 0.900444900209235 0.8939668793444209 4 - - 0.964702699698024 HCT116-unstranded 10.0 692662 CCCGCGCCTGTGTCCCCAGGGCGCAGGGCCGCGCGTCCAGCCCCAGACCCGCCGGGGTCCCTGGGGACGCGCCAGCCCGGCAGTGGCTCGACGATGGAGGAGCCGCAGCGCGCCCGCTCGCACACAGTCACCACCACCGCCAGCTCCTTCGCAGAGAACTTCTCCACCAGCAGCAGCAGCTTCGCCTACGACCGGGAGTTCCTCCGCACCCTGCCCGGCTTCCTCATCGTGGCCGAGATC|ATGCAGCCGTCTGATGAGGCCACAACCCCTAGGCCCCTCAGGAGCTTTGCAGAGAGGAGGACGTGTACTCCAGGCGAGGCCTCTGGACCTGTGTTCCTGTGCCAAAGTCCTGTCAGGCTGGTGGGCACCAGGAAAGGCCTGCACCCTCTTCCTGCTCTCCCAGGAAGCCAGCTCCCTGAGC 3 1.0 0.680963058596127 0.3568122542010449 Y Y 3.4471914517728104 3.58424216889964 3.4471914517728104 1 0.0 0.0 Y 0.0 N Y 588 4309 ENSG00000170293 ENSG00000153551 + - 3 3 32411817 32524559 coding coding CMTM8 CMTM7 32280171 32433163 + + 0.0 32280611 32495733 + - N - - N SA470 1 0.0352422907488987 1.0 1 0 3 Y Y 0.0352422907488987 0.0 8 1.25025802690923 1.12069760961293 1.25025802690923 1.12069760961293 4 - - 0.989006818533532 HCT116-unstranded 10.0 690690 GCTGGAACTGAGTACTTCCGGGTCCCCGCATTTGGCTGGGTCATGTTTGTAGCTGTATTTTACTGGGTCCTCACCGTCTTCTTCCTCATTATCTACATAACAATGACCTACACCAGGATTCCCCAGGTGCCCTGGACAACAG|TGGTCACCCTGCTGATTGCCTTCATCTGTGTGCGGAGCTCCCTGTGGACCAACTACAGCGCCTACAGCTACTTTGAAGTGGTCACCATTTGCGACTTGATAATGATCCTCGCCTTTTACCTGGTCCACCTCTTCCGCTTCTACCGCGTGCTCACCTGTATCAGCTGGCCCCTGTCGATGCAGCCG 2 0.8140789022064621 0.975433098222357 0.0487308471514095 Y Y 3.5310618119471497 3.50844286886569 3.50844286886569 0 0.0 0.0 Y 0.0 N Y 588 4309 ENSG00000170293 ENSG00000153551 + - 3 3 32411817 32524559 coding coding CMTM8 CMTM7 32280171 32433163 + + 0.0 32399038 32483332 + - N - - N SA470 1 0.0 1.0 1 0 3 Y Y 0.0 0.0 5 0.647802086481464 1.05591740096479 1.05591740096479 0.647802086481464 4 - - 0.992339981631 HCT116-unstranded 10.0 692661 GCCGCGCGTCCAGCCCCAGACCCGCCGGGGTCCCTGGGGACGCGCCAGCCCGGCAGTGGCTCGACGATGGAGGAGCCGCAGCGCGCCCGCTCGCACACAGTCACCACCACCGCCAGCTCCTTCGCAGAGAACTTCTCCACCAGCAGCAGCAGCTTCGCCTACGACCGGGAGTTCCTCCGCACCCTGCCCGGCTTCCTCATCGTGGCCGAGATCG|TCACCCTGCTGATTGCCTTCATCTGTGTGCGGAGCTCCCTGTGGACCAACTACAGCGCCTACAGCTACTTTGAAGTGGTCACCATTTGCGACTTGATAATGATCCTCGCCTTTTACCTGGTCCACCTCTTCCGCTTCTACCGCGTGCTCACCTGTATCAGCTGGCCCCTGTCG 1 0.5701579062224978 0.688869451422929 0.7944870480535601 Y Y 3.4546400172972502 3.43039601505348 3.43039601505348 0 0.0 0.0 Y 0.0 N Y 588 4309 ENSG00000170293 ENSG00000153551 + - 3 3 32411817 32524559 coding coding CMTM8 CMTM7 32280171 32433163 + + 0.0 32280611 32483332 + - N - - N SA470 2 0.0 1.11111111111111 1 1 3 Y Y 0.0 0.0 9 1.12069760961293 0.829186670696274 1.12069760961293 0.829186670696274 4 - - 0.987022129904811 HCT116-unstranded 10.0 951431 CGTGGGCGGCGGGCTCTGCCTCCGCCGAGGGACAGCCGGATCGCCCCTCTGCTTCCCGCAACTGCCCTGATCACCCCCCGTCCCAGCCCTTGAGTGAACGTCCTTCTGAGCGGCTTCCTGGGGTCCTCCCCACGTCCCAAAGGCCGGCAAGATGGTGTCCTGGATGATCTGTCGCCTGGTGGTG|GTGCTGGAGGAGGAAACCGGCGGAGCAGCTTCCCCACTCTCAGTTGCGCTTCTGGCGATGGCGATCAGAGGTCCTGCTGCGCTCTCCGCCGCGCTCTACCTCCATTAGCCGCGCTGCGCGGTGCTGCGCCCTCGCCGGTGCCTCTCTCCTGGGTCCCAGGATCGGCCCCCACCATCCAGGCAC 4 0.928161223811952 0.466398233936494 0.15797365877066002 Y Y 3.43312450200257 3.51782959285392 3.43312450200257 2 0.0 0.0 Y 0.0 N Y 3360 1588 ENSG00000168476 ENSG00000168453 + - 8 8 21999464 21990897 coding utr5p REEP4 HR 21995533 21971928 - - 0.0 21998964 21988565 - + N - - N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 9 1.15308771393701 1.14013167220738 1.15308771393701 1.14013167220738 4 - - 0.9775239364318872 HCT116-unstranded 10.0 540863 GTCGGGCCCCGGGCCGCCACCGTCACCTCGGCCGCTGCCGCTGTCGCCATCGCCTTGTTTCCCCATCCCCCGCCATGGCCGAGGACCTCTCTGCGGCCACGTCCTACACCGAAGATGATTTCTACTGCCCCGTCTGTCAGGAGGTGCTCAAAACGCCCGTGCGGACCACGGCCTGTCAGCACGT|GTTCTGGTTTCTTCATGCATTTCGATAGCAGCTCTGTAAATGTGGGGGCCACAGCAGTGCTGGAAAGTAGAACGCTGTACCCTAAAAGAGGATTTCAGTGCCTGCAATTTTACTTATATAACAGTGGCAGTGAAAGTGATCAACTGAACATCTATATCAGGGAGTATTCTG 18 0.9417765077925072 0.8880727322516041 0.8042048806972891 Y Y 3.4378445805779303 3.45872825368684 3.4378445805779303 0 0.9941684736185028 0.0 Y 0.031966620671529 N Y 4004 459 ENSG00000134758 ENSG00000141434 + - 18 18 29711524 29800367 coding coding RNF138 MEP1B 29671818 29765032 + + 0.0 29672849 29790464 + - N - 0.0677236245597189 N SA470 1 0.221052631578947 1.0 1 0 2 N Y 0.221052631578947 0.0 22 1.23082396431478 1.13365365134256 1.23082396431478 1.13365365134256 4 - 0.181818181818182 0.9932609216694972 HCT116-unstranded 10.0 540878 CGGGCCCCGGGCCGCCACCGTCACCTCGGCCGCTGCCGCTGTCGCCATCGCCTTGTTTCCCCATCCCCCGCCATGGCCGAGGACCTCTCTGCGGCCACGTCCTACACCGAAGATGATTTCTACTGCCCCGTCTGTCAGGAGGTGCTCAAAACGCCCGTGCGGACCACGGCCTGTCAGCACGTA|AATACCCACTGGGAGCTGGCAACTTTATCATGTAACATTGAAAGTGACCAAGAAGTTTAGAGTGGTGTTTGAAGGACGCAAAGGCTCTGGTGCATCACTGGGTGGTCTGTCTATTGATGACATCAATCTTTCGGAAACACGGTGCCCTCATCATATCTGGCATATAAGGAATTTCACACAGT 12 1.0 0.426800972968778 0.753152906606251 Y Y 3.50848272165904 3.53871326596283 3.50848272165904 0 0.9945205068155892 0.0 Y 0.0 N Y 4004 459 ENSG00000134758 ENSG00000141434 + - 18 18 29711524 29800367 coding coding RNF138 MEP1B 29671818 29765032 + + 0.0 29672849 29793079 + - N - - N SA470 2 0.23333333333333306 1.125 1 1 2 N Y 0.23333333333333306 0.0 8 1.16604375566664 1.08830750528886 1.16604375566664 1.08830750528886 4 - - 0.9878703294093172 HCT116-unstranded 10.0 4718 TTTCCTTATCGCCGTGGCCCGGGGATGGGAGTCCATGTCCCAGCCACACCTCAGGGCTCTCCTATGAAAGATCGCCTCAACCTCCCAAGTGTACTAGTGTTGAACAGCTGTGGAATAACCTGTGCAGGAGATGAAAAAGAAATTGCTGCTTTCTGCGCTCATGTGTCGGAACTAGATCTTTCTGACAACAAACTCGAAGACTGGCATGAG|ATGGGAGAGCCTTCGTCGCCCCATTTTGGGCAGATGTGCACAATGGAATTCGAGGCGAGATCTATTACAGAGAGACCATGGAGCCTGCCATCTTGAAAAGAGCCACCAAGGACATCAGGAAGTACTTCAAAGACATGGCAACCTTCTCTGCCACTTGGGTTTTCATTGTGAC 5 0.0247272642000915 0.7885611698598209 0.798589273973524 Y Y 3.46042367086604 3.39640391403072 3.39640391403072 0 0.0 0.0 Y 0.00261096605744116 N N 847 2285 ENSG00000154114 ENSG00000109927 + - 11 11 120961484 121062202 coding coding TBCEL TECTA 120894781 120971882 + + 0.0 120918376 120979993 + - N - 0.0730669175163451 N SA470 1 0.0 1.0 1 0 2 N Y 0.0 0.0 11 1.30856021469256 1.47051073631292 1.47051073631292 1.30856021469256 4 - 2.18181818181818 0.987994885374266 HCT116-unstranded 10.0 6728 AACAGACAATAACCTCCAAGACTGGACTGAAATACGAAAGTTAGGAGTTATGTTTCCTTCACTGGATACCCTCGTCCTGGCCAACAATCATTTGAATGCTATTGAGGAGCCTGATGATTCATTGGCCAGGTTGTTTCCTAATCTTCGATCCATCAGCCTCCACAAGTC|AGGTCAATAACAACGGAGTTGTTTCCTTCAATGTGCTAGTGAGCCAGTTCACGCCAGAATCCTTTCCCCTGACAGATGGGAGAGCCTTCGTCGCCCCATTTTGGGCAGATGTGCACAATGGAATTCGAGGCGAGATCTATTACAGAGAGACCATGGAGCCTGCCATCTTGAAAAGAGCCACCAAGGACATCAGGAAGTACTTCAAAGACATGGCAACCTTCTCT 6 0.3974924621607221 0.470852748760685 0.148476424046866 Y Y 3.64549358599252 3.78105657260285 3.64549358599252 0 0.0 0.0 Y 0.0 N Y 847 2285 ENSG00000154114 ENSG00000109927 + - 11 11 120961484 121062202 coding intron TBCEL TECTA 120894781 120971882 + + 0.0 120926017 120979920 + - N - 0.0355400461929855 N SA470 1 0.0 1.0 1 0 2 N Y 0.0 0.0 9 1.0235272966407098 1.327994277287 1.327994277287 1.0235272966407098 4 - 0.666666666666667 0.9814788668870608 HCT116-unstranded 10.0 914358 AGTACGATGTCAGCTCGGCCGCGCAGCCCGGCTGCTCAGTCCTCGACGAGGCCTTCCAGCGCTATCGTGACCTGCTTTTCGGTTCCGGGTCTTGGCCCCGTCCTTACCTCACAGG|AGGAAGTCTCTACAGCCTGGAAGGTCCTCCGGACAGAACCTATTGTGTTGAGGCTGCGATTTTCTCTCTCCCAGTACCTAGATGGACCAGAACCATCCATTGAGGTTTTCCAGCCATCAAATAAGGAAGGATTTGGGCTGGGTCTTCAGTTGAAAAAGATCCTGGGTATGTTTACATCCCAACAATGGAAACATCTGAGCAATGATTTCTTGAAGACCCAGCAGGAGAAGAGGCACAGTTGGTTCAAGGCAAGTGGTACCATCAAG 6 0.0964444950886484 0.388423980734458 0.3942728174238039 Y Y 3.31233066536513 3.61567361684267 3.31233066536513 0 0.0 0.0 Y 0.0 N Y 212 2563 ENSG00000260729 ENSG00000137817 + - 15 15 72668322 72565340 intron coding RP11-106M3.2 PARP6 72577068 72533522 - - 0.0 72668061 72557512 - + N - - N SA470 1 0.0 1.0 1 0 2 N Y 0.0 0.0 5 1.04943938009997 0.7579284411833129 1.04943938009997 0.7579284411833129 4 - - 0.9877684846659592 HCT116-unstranded 10.0 914557 GCCTCAGAACTTCCAAACCTCCGACCAGCGCTACGTCCTTTACCCGAACAACTTTCAATTCCAGTACGATGTCAGCTCGGCCGCGCAGCCCGGCTGCTCAGTCCTCGACGAGGCCTTCCAGCGCTATCGTGACCTGCTTTTCGGTTCCGGGTCTTGGCCCCGTCCTTACCTCACAGG|ACAGTGACTTGTTACCACCGCAACAGCAGAGCCTGCCATCCCCAACAGATCACCAGTTGTCCCTGACATCGTGCCCTACCTTGTCTCCCTTTGTGGTCTCCTAAATGCCCATCTCGTTGGCCTTGGTTCGGCTAGTGGTATGGAGGGGTGCTGCCTAGCACTGACCTGAGAGTGTGTGTGACCCACTGACCCAATGGACATCAAAGGCCAGTTCTGGAATGATGACGACTCGGAGGGAGATAATGAATCAGAGGAATTTCTCTATGGCGTTCAGGGGAGCTGTGCAGCTGACCTGTATCGACACCCACAGCTTGATGCAGACATTGAAG 1 8.12649597308827e-11 0.688869451422929 0.7944870480535601 Y Y 3.31233066536513 3.64759957832565 3.31233066536513 0 0.0 0.0 Y 0.0 N Y 212 2563 ENSG00000260729 ENSG00000137817 + - 15 15 72668322 72565340 intron utr5p RP11-106M3.2 PARP6 72577068 72533522 - - 0.0 72668061 72560012 - + N - - N SA470 1 0.0 1.0 1 0 2 N Y 0.0 0.0 5 0.796796566372201 0.660758128211094 0.796796566372201 0.660758128211094 4 - - 0.9885914286038612 HCT116-unstranded 10.0 220458 TGAACTGGCTGAAGAAGCGCACGGGCCCGGCTGCCACCACCCTGCCTGACGGCGCAGCTGCAGAGTCCTTGGTGGAGTCCAGCGAGGTGGCTGTCATCGGCTTCTTCAAGGACGTGGAGTCGGACTCTGCCAAGCAGTTTTTGCAGGCAGCAGAGGCCATCGATGACATACCATTTGGGATCACTTCCAACAGTGACGTGTTCTCCAAATACCAGCTCGACAAAGATGGGGTTGTCCTCTTTAAGAAG|GGTGACCTGGAGCAGGTGGGGCGCTTCATCCGGACTCGGAAAGTCTCCCTGGCCACCATCCACCCCTCAGGCCTGGCCGCCTTGCATGAAGCCGTGCTCTCTGGAAACCTGGAATGCGTGAAGCTGCTGGTCAAATACGGGGCTGACATTCACCAGCGAGATGAGGCGGGCTGGACACCCCTGCACATTGCCTGCAGCGATGGGTACCCTGACATAGCC 16 0.7232139633745329 0.716957716251848 0.369024986370947 Y Y 3.72448538129198 3.5748554449114103 3.5748554449114103 0 0.0 0.0 Y 0.0385883776294736 N N 234411 190 ENSG00000185624 ENSG00000182676 + - 17 17 79818570 79792926 coding coding P4HB PPP1R27 79801035 79791368 - - 0.0 79813018 79792709 - + N - - N SA470 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 15 1.56120302842033 1.39277448593515 1.56120302842033 1.39277448593515 4 - - 0.93085894173072 HCT116-unstranded 10.0 1098218 CGACGCCAGCGACCGGAAGCAGAATAGAGGCGCCAGAAGATGCGCCATCAGGATACACATTGGCCAATCAGCTTCAGCAATGGAGCGTGCAAAACACCAGTGAGCTTCTGTCTTGCTGGAGGGTCGGCTTTGGGCGGAACTGGCTTTGTTGACCGGGAGAAACGAGATGGGGGTGAAGCTGGAGATATTTCGG|GTATGAGACCACCGGGCTGAGCGAGGCGCGGGAGAAGGCCGTCTTGCTGGACGAGGACGATGACTTGTGGGTGGAGCTTCGCCACATGCATATCGCAGATGTGTCCAAGTGCGTGCACACGGGGACCGGATCCCCCCCCCACCGCCCACTGTGGGCCTGGTAGCGGCCTTGGGATCCCTGGCTGCTGCCAAGTCTTTGGCCCTCATGAGCACCCCTCGTGTGACTCCAGACTGGCCTCCAATTTCACCCCACCTCTCCCTGTCCC 5 0.359893768498818 0.993513967462518 0.640029403573805 Y Y 3.1840484104099 3.38656252929588 3.1840484104099 0 0.994829941187759 0.0 Y 0.0 N Y 1360 8235 ENSG00000229833 ENSG00000076944 + - 19 19 7696509 7712758 coding coding PET100 STXBP2 7694671 7701991 + + 0.0 7694746 7707315 + - N 0.934525786699591 0.938705604082268 N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 5 1.04296135923516 1.39925250679996 1.39925250679996 1.04296135923516 4 258.2 283 0.979516972813601 HCT116-unstranded 10.0 6774 TTCCCCAGACCAGTCCCATCAAGTGACTGGTAACCACCAGCAGCCTCCTCAGCAGAACACTGGATTTCCACGTAGCAATCAGCCCTATTACAATAGTCGTGGTGTGTCTCGTGGAGGCTCCCGTGGTGCTAGAGGCTTGATGAATGGATACCGGGGCCCTGCCAATGGATTCAGAGGAGGATATGATGGTTACCGCCCTTCATTCTCTAACACTCCAAACAGTGGTTATACACAGTCTCAGTTCAGTGCTCCCCGGGATTACTCTGGCTATCAACG|GTAATAATTTTTCACCATGCATCGGAAAAAGGTGGATAACCGAATCCGGATTCTCATTGAGAATGGAGTAGCTGAGCGGCAAAGATCTCTCTTTGTTGTAGTTGGGGATCGAGGAAAAAAAAAAAAAAAAA 4 0.24533292925258304 0.833012196212688 0.698979418134304 Y Y 3.7329670165863122 3.4744906206362702 3.4744906206362702 0 0.893391707828169 0.0 Y 0.0 N Y 16429 6384 ENSG00000135387 ENSG00000135372 + - 11 11 34122703 34169217 coding intron CAPRIN1 NAT10 34073230 34127149 + + 0.0 34118843 34129758 + - N - - N SA470 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 7 1.29560417296293 0.693148232535167 1.29560417296293 0.693148232535167 4 - - 0.980464572216104 HCT116-unstranded 10.0 792807 AGTGGTGAATACTTTTTGAAGGCAAATCAGAAGAAGCGGCAGAAAATGGAAGCAATAAAGGCTAAACAAGCAGAAGCCATCAGTAAGAGACAAGAGGAAAGAAACAAAGCATTTATTCCACCTAAGGAAAAACCAATTGTGAAACCTAAGGA|AGGATGCAAAGTATTGTTCCTGGGTGTGTCTGTGAGAGTATTGCCAAAGGAGAGCAGTGAACTGGGAAAAGCAGACCCACCTCAATGTGGGTGGGCAACATCCAATCGGCTGCCAGCTAGAATAAACCAGGCAGGAGAAGATGGAAGAGCCGACTTGCTGAATCTT 6 0.7974490968369571 0.909943829165554 0.9100375839631252 N Y 3.48064499656564 3.37184681248547 3.37184681248547 0 0.0 0.0 Y 0.0 N Y 13093 173 ENSG00000111615 ENSG00000180881 + - 12 12 75905416 75784708 coding intron KRR1 CAPS2 75890684 75669759 - - 0.0 75895503 75765262 - + N - 1.99305253188061 N SA470 1 1.0 1.0 1 0 1 N N 0.0 1.0 5 0.608933961292576 0.7708844829129431 0.7708844829129431 0.608933961292576 4 - 2.4 0.985803465773154 HCT116-unstranded 10.0 671592 ATGAGGAATTTGGGAATCAGGTCAACATTCCAGTCTCGGCCTCGGCCCATCGACTCAGGGGGCCCCTCCAGCAACTGAAAACGCTTATACAGCTCCTCCAGGGGTGTGATGGAGGAGCTCTCGCCCCCGTAGTAGGGGTTCCGGTCCATGTGCAGCACCTTCTTCCCGTTCACAGACATGATGCCCGACAGGATGCATT|CCTGGAAGTCCTGAAGCATCATCTGCCAGGGAGAGGGCTGCGTGCGGGCCACGAGGAGACTACCCTTCTTGCTCAGGCTGCTGACATACTCGCAGTGGAAGGAGTAGATGCTGGGCCCTGTGACCTGGGAAGCATTGAAGTAGGCGACGGAGCCATTGCTGTGGACTTCGAGGCGCTCCATGGTAAACCAGTGCCGGGC 3 0.994454062416208 0.473639180289162 0.209723533750946 Y Y 3.53039946453785 3.38912318237562 3.38912318237562 2 0.0 0.0 Y 0.00250626566416035 N Y 24195 15284 ENSG00000203879 ENSG00000071553 - + X X 153671814 153664862 coding intron GDI1 ATP6AP1 153665266 153656978 + + 0.0 153666869 153663851 - + N - 0.471977007654285 N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 6 0.932835004533309 1.25025802690923 1.25025802690923 0.932835004533309 4 - 353.333333333333 0.981554313748411 HCT116-unstranded 10.0 1101386 TGGCGGCTACAGCGTGCAGCATAGCACTCACTGCTGCATTTTCAGCCCCGGAGGTGTCACTGTCCAGGGCCACTGGTGTTGCCTCAGCTGCTTCCACTTTGTCCTGGGGTTTAGATGGGACTGGTGTCCGGCTCAGCTCACCCCAGTGCCCAGGTCCAGGCTCTATGCAG|CCTGTGGAGGGCTGTAGCTGCTGACGGTGGGGGTGCTGGTATTGGCGCTTGAGCCAGGGATGTTGCTGTTCTTATTGTAGGTGCTGGCCCCTGGGGGGTTCCGAGCAGGGCTGTAGCTGGGTGGTGGCGGTGGCTGCTGGGGTGGTGGCTGTGGTGGCGGAGGCTGCTGTGGTGGCGGCTGTTGCTGGGGAGCCCGGTTGTAGCTGCCTCTGTTGTTGGAG 6 0.8015268286141959 0.329265658316224 0.452559032145426 Y Y 3.25207246524879 2.96270317758565 2.96270317758565 2 0.994132653061225 0.0 Y 0.0 N Y 5756 25039 ENSG00000142039 ENSG00000105323 - + 19 19 41830785 41813811 coding intron CCDC97 HNRNPUL1 41816094 41768391 + + 0.0 41822289 41810166 - + N - 2.70107289911122 N SA470 1 0.324324324324324 1.0 1 0 1 N Y 0.0 0.324324324324324 6 1.0235272966407098 1.04943938009997 1.04943938009997 1.0235272966407098 4 - 260.166666666667 0.944583864126447 HCT116-unstranded 10.0 1102524 CCGCTGGAACCGCGGGAATGAGTCTTTGCCGGAGAGGGCGGAGGCCGTGGGAGAGACGCTCACGCTGCCGGGTCTGGTATCCGCGGATAACGGCACCTACACTTGCGAGGCGTCCAATAAGCACGGCCATGCGAGGGCGCTCTACGTACTTGTGGTCTACGACCCTGGTGCGGTGGTAGAGGCTCAGACGTCGGTTCCCTATGCCATTGTGGGCGGCATCCTGGCGCTGCTGGTGTTTCTGATCATATGTGTGCTAGTGGGCATGGTCTGGTGCTCGGTACGGCAGAAGG|CATCCCTCTCTACCTGCCAACATCCTGTATTAGAGAACTTGTGGCCGGAGGTGTGGCTGTGGAGAGCTGGCCGGGGAGGGACGCTGCTCAGCTGCTGCTCTGCTCCTGTCTCCTGTCCCCTCCCCCGGTCATGACAGAGACCCGTGAGCCAGCTGAGACTGGGGGCTACGCCAGCTTGGA 1 2.4523718834410198e-06 0.7955762302690391 0.866982149435789 Y Y 3.5027295733137898 3.5978451103534503 3.5027295733137898 0 0.99445623967917 0.0 Y 0.0 N Y 3196 2651 ENSG00000105767 ENSG00000131116 + - 19 19 44143991 44124014 coding utr5p CADM4 ZNF428 44126522 44111377 - - 0.0 44128266 44118586 - + N - - N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 6 0.945791046262938 0.803274587237016 0.945791046262938 0.803274587237016 4 - - 0.972182788815588 HCT116-unstranded 10.0 793035 TGCGGATGGAGCGCATGCACTTCACGGCGGCAATCCCGTTGTTGGCAATAAGCACCTTCTCGATGACCCGATCCCCCCCAAAGCGTGTGACAAACTCAGCGGGAGAAGCCACGGTAAAGTCTCTGTGCAGGTCCAGCTTCTTGTGTTCCCGTCCCCTCTTCACCAGGTGGAGTCCCGACATGCTCGG|CCTGAAAAGGGAGGAAACAGGAATCATTAGGCCAGGTTCTCAGAAGCCTCCCAAACCTTGCCACGTGGAACCATCCAGCTCCACATCCAGCATGTGGGTCCTGCCTTTGCAGAGGCAGGCTCCTCAGTGTTGAATGCTCTTGTTCCTCTTTGTGGCCTGGAAAGTTCAATATCCACTCAGACATTCTCTCCACTGGGAAATGTCTTCTTTCCTGGGCTGACCCAGCCGTTGCTGCCTTTTTGTTCC 8 0.681626182228886 0.36198283117109903 0.259918448773988 Y Y 3.46873747229103 3.4948797802052303 3.46873747229103 1 0.0 0.0 Y 0.0 N Y 2808 54 ENSG00000076555 ENSG00000256139 - + 12 12 109706031 109563369 coding intron ACACB RP11-443D10.3 109554400 109549023 + + 0.0 109604666 109551220 - + N - 3.36643729385617 N SA470 1 0.0 1.0 1 0 2 N Y 0.0 0.0 6 0.7190603159944251 1.33447229815182 1.33447229815182 0.7190603159944251 4 - 1 0.992339981631 HCT116-unstranded 10.0 791029 GGTCAGCCCAGGAAAGAAGACATTTCCCAGTGGAGAGAATGTCTGAGTGGATATTGAACTTTCCAGGCCACAAAGAGGAACAAGAGCATTCAACACTGAGGAGCCTGCCTCTGCAAAGGCAGGACCCACATGCTGGATGTGGAGCTGGATGGTTCCACGTGGCAAGGTTTGGGAGGCTTCTGAGAACCTGGCCTAATGATTCCTGTTTCCTCCCTTTTCAG|ATTTTCTGAATGGTCTTGCTTCTTTGTCTATCTTGTCTGATTTTCTCCTGTCTGACCTTTTCCTGGTTAAAAATCTGGGGGAAAATGACGGACTCCAAGCCGATCACCAAGAGTAAATCAGAAGCAAACCTCATCCCGAGCCAGGAGCCCTTTCCAGCCTCTGATAACTCAGGGGAGACACCG 24 1.0 0.683330390677454 0.7521326344661909 Y Y 3.47552369040616 3.02228968272288 3.02228968272288 0 0.0 0.0 Y 0.0 N Y 54 2808 ENSG00000256139 ENSG00000076555 + - 12 12 109563369 109706031 intron utr5p RP11-443D10.3 ACACB 109549023 109554400 + + 0.0 109551220 109577202 + - N 3.37470410015881 0.0408292558315387 N SA470 1 0.0 1.0 1 0 2 N Y 0.0 0.0 26 1.27617011036848 1.21138990172034 1.27617011036848 1.21138990172034 4 0.230769230769231 0.115384615384615 0.980554975803131 HCT116-unstranded 10.0 381365 TGTCTCGGCTGAGGCAGCCATCTTTCTCTTGCCGCGTGCTGGTGTTGGAGGACCCTCCCTGCTTCAGGGTACAGCTCGCAGAAAGAAGAAGGTGGTACATAGAACAGCCACAGCTGATGACAAAAAGCTTCAGAGTTCTCTAAAAAAACTGGCTGTGAATAATATAGCTGGTATTGAAGAG|AAATAATCATTGCTGGGCCGGGCGCGGTGGCTTACGCCTGTAATCCCAGTGCTTTGGGAGCCTGAGGCAGGCAGATCACCTGAAGTTGGGAGTTCGATACCAGCCTTACCAACATGGAGAAACCCTGTCTCCACTAAAAAT 5 1.0 0.9805479597458292 0.53401608634036 Y Y 3.25360004855864 3.41679307359967 3.25360004855864 0 0.7949630019981121 0.0 Y 0.0 N N 1477 498 ENSG00000134717 ENSG00000157077 + - 1 1 52556388 52812358 coding intron BTF3L4 ZFYVE9 52521797 52608046 + + 0.0 52530610 52646351 + - N - 0.445649146131399 N SA470 43 0.9112903225806452 14.2 2 5 4 N Y 0.0 0.9112903225806452 5 0.90692292107405 0.803274587237016 0.90692292107405 0.803274587237016 4 - 1.8 0.9148666059087388 HCT116-unstranded 10.0 167479 CAGCGCAGCGGCGCTGTCTTCATCTCCATTGATGCTCATCATCGCTTTGGTCGCTGCAGTGAGAGGGTTTTCCAGGAAGGATTTCCAGGCCTCATCCTCACTAGTGTAGGACCGCCGCTGTGGATAAAGTGCTTCATTCTGAAGAACCAACACTGGCCGTTTG|CATCTGCAGAATTTCTGTGTACTAAGCCAATATAATGAATTCTTAGTCAGCAGTGATTGGCCTTTCTCTTTCAGGACTCCCTGAAGGCTGTGTCCATGGAAACACGTTCTATCAGTGTCCTCTTCAGTCCAGTTGAACTGAAAACTTGAAGGGCTTTTTTTTCCAGCAGTTGCTGTTGACTCGACCAGTGTGCTAAATTGTTT 7 1.0 0.94506938772822 0.724295681085317 Y Y 3.7574444125448494 3.54400240599166 3.54400240599166 3 0.0 0.0 Y 0.0 N Y 384 743 ENSG00000134317 ENSG00000115750 - + 2 2 10142411 10074537 coding coding GRHL1 TAF1B 10085341 9983483 + + 0.0 10095044 10059949 - + N - 0.580594172505802 N SA470 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 6 1.04296135923516 1.06887344269442 1.06887344269442 1.04296135923516 4 - 16.1666666666667 0.994848257334812 HCT116-unstranded 10.0 914312 AGAGGCTGCCTGTCGCCCCTTCCTCCTCCCCTTCTTGGGCACTGTGGGAGCTTCTGGGTCCTGCTGGAGGCTGGTCCCCTCAGGCCGCTGGGTTGCAGTCCTCTTAGGAAGGTCTCTCTTTGCCCTTCGTGTCCTGGAAGGGGCCTTGCTTGGAGGCAAAGCGTC|TTCATTTTTTCAGAAGCAGAAGTCAGGAGTGGAGTCAGTAAGTATCTCTTTTGATGTTCAAATTGTCCCATCTTTGGCCAGTGGAACAAGCCATTATTCTTCGATAGGTTCCTTAAGATACTCCAGGCGAGTCCTCCTTGTACCCTCCATGTGCCAA 5 1.0 0.8901206215464941 0.943836078668152 Y Y 3.49168728493972 3.17821132367863 3.17821132367863 0 0.993650292835874 0.00309597523219829 Y 0.00309597523219829 N N 319 9954 ENSG00000140398 ENSG00000140365 - + 15 15 75647592 75634268 coding utr3p NEIL1 COMMD4 75639296 75628232 + + 0.0 75646994 75633828 - + N - 72.1871720485061 N SA470 1 0.8508771929824559 1.0 1 0 1 N Y 0.0 0.8508771929824559 7 0.8421427124259041 0.738494378588869 0.8421427124259041 0.738494378588869 4 - 30.4285714285714 0.989858881574724 HCT116-unstranded 10.0 1037401 GTGAAAATAAAAGAGTTTTACTTCTCTGGACTGATCCTATTCACAGCTTCCTCATGAACTTTTCTAATAGAACAAGGAAAGCTCTCCAACCATGTCTGGCGTTGAGAAGCCAAGAGTCTCTGTCAACTCTCTCATTGCCCAGTGGTGACATGTGCTCTTCTCCACACTGTTGGGAGGTAATGCTGCCCCACGTGCTGGTGCAG|TGCCTGATTTGAGATGGGGTCCCAGGTCTCGGTGGAATCGGGAGCTCTGCACGTGGTGATTGTGGGTGGGGGCTTTGGCGGGATCGCAGCAGCCAGCCAGCTGCAGGCCCTGAACGTCCCCTTCATGCTGGTGGACATGAAGGACTCCTTCCACCACAATGTGGCTGCTCTCCGAGCCTCCGTGGAGACAGGGTTCGCCAAA 22 0.901880377115472 0.962529635909118 0.664188189646891 N Y 3.50997045217554 3.42424163912411 3.42424163912411 2 0.995061698288055 0.0 Y 0.990123396576111 N N 7399 3541 ENSG00000079332 ENSG00000042286 + - 10 10 71930279 71892690 utr3p utr5p SAR1A AIFM2 71909960 71857979 - - 0.0 71912019 71883853 - + N - - N SA470 3 0.0 1.3636363636363602 1 6 2 N N 0.0 0.0 22 1.17899979739626 1.30856021469256 1.30856021469256 1.17899979739626 4 - - 0.981682197619476 HCT116-unstranded CGHSA0378 10.0 1037402 GCCTCGTGGAATCCAAAGTTGAGCTTAATGCTTTAATGACTGATGAAACAATATCCAATGTGCCAATCCTTATCTTGGGTAACAAAATTGACAGAACAGATGCAATCAGTGAAGAAAAACTCCGTGAGATATTTGGGCTTTATGGACAGACCACAGGAA|AGTGCCTGATTTGAGATGGGGTCCCAGGTCTCGGTGGAATCGGGAGCTCTGCACGTGGTGATTGTGGGTGGGGGCTTTGGCGGGATCGCAGCAGCCAGCCAGCTGCAGGCCCTGAACGTCCCCTTCATGCTGGTGGACATGAAGGACTCCTTCCACCACAATGTGGCTGCTCTCCGAGCCTCCGTGGAGAC 3 0.941090419139453 0.35339858577210403 0.7131874756316541 N Y 3.64450036901598 3.4048855493250496 3.4048855493250496 1 0.9937286100808108 0.0 Y 0.0 N Y 7399 3541 ENSG00000079332 ENSG00000042286 + - 10 10 71930279 71892690 coding utr5p SAR1A AIFM2 71909960 71857979 - - 0.0 71913594 71883853 - + N - - N SA470 2 0.0 1.42857142857143 1 3 2 N N 0.0 0.0 7 0.8615767750203471 1.01057125491108 1.01057125491108 0.8615767750203471 4 - - 0.932152284592872 HCT116-unstranded CGHSA0378 10.0 794549 CATGGAGATTTATCTGGGTGGGCCAAGCAAGGTGTTCTCCTTCTCAACGCTGTCCTCACGGTTCGTGCCCATCAAGCCAACTCTCATAAGGAGCGAGGCTGGGAGCAGTTCACTGATGCAGTTGTGTCCTGGCTAAATCAGAACTCGAATGGCCTTGTTTTCTTGCTCTGGGGCTCTTATGCTCAGAAGAAGGGCAGTGCCATTGATAGG|CTTGGGAGCTATTGGAAAACAGGCATCTGGAACCACAGTCTGCAGACCCCTGTGTGTACTCACTGTCAGTGCGGTGGGAACAAAAAGGCAGCAACGGCTGGGTCAGCCCAGGAAAGAAGACATTTCCCAGTGGAGAGAATGTCTGAGTGGATATTGAACTTTCCAGGCCACAAAGAGGAAC 18 0.7577985646070358 0.5772964758948511 0.475943647029619 Y Y 3.57489529770476 3.66745018166468 3.57489529770476 0 0.0 0.0 Y 0.0 N Y 8172 54 ENSG00000076248 ENSG00000256139 + - 12 12 109548797 109563369 coding intron UNG RP11-443D10.3 109535379 109549023 + + 0.0 109541416 109550900 + - N - 0.474510250923542 N SA470 1 0.370731707317073 1.0 1 0 1 N Y 0.0 0.370731707317073 19 1.2826481312333 1.327994277287 1.327994277287 1.2826481312333 4 - 0.789473684210526 0.9426734354712673 HCT116-unstranded 10.0 381476 GTTCAAGGTACGACACCGAGCTTCTGGTCAGGTGATGGCTCTTAAGATGAACACATTGAGCAGTAACCGGGCAAACATGCTGAAAGAAGTACAGCTCATGAATAGACTCTCCCATCCCAACATCCTTAGGTTCATGGGTGTATGTGTTCATCAAGGACAATTGCATGCACTTACAGAG|GCCATCATGAGGAAGCCACGAGCAGCCGTGGGAAGTGGTCACAGGAAGCAGGCAGCCAGCCAGGAAGGGAGGCAGAAGCATGCTAAGAACAACAGTCAGGCCAAGCCTTCTGCCTGTGATGGAGGTGAATCAACTCTGGGCTGGCCTGGGCTACTATTCT 3 0.742716311383472 0.630068797486714 0.338732563898727 Y Y 3.64081336021051 3.54400240599166 3.54400240599166 0 0.0 0.0 Y 0.0 N Y 898 1015 ENSG00000070759 ENSG00000132781 + - 1 1 45956872 45806142 coding coding TESK2 MUTYH 45809555 45794835 - - 0.0 45851584 45800183 - + N - - N SA470 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 5 1.0623954218296 0.816230628966645 1.0623954218296 0.816230628966645 4 - - 0.9422143718561709 HCT116-unstranded 10.0 6923 CCGGTGCAATGGGTTTGAGGACTGTCCCGATGGCAGCGATGAAGAGAACTGCACAGCAAACCCTCTGCTTTGCTCCACCGCCCGCTACCACTGCAAGAACGGCCTCTGTATTGACAAGAGCTTCATCTGCGATGGACAGAATAACTGTCAAGACAACAGTGATGAGGAAAGCTGTGAAAGTTCTCA|AGGTGTTGGCTACGTTTGTGGTTTTAAGAAAGCCTGAGGGCCTGAAGGCAGCCCCTGGAGAAGCCCTTTCCGAGGGCATTCGGAACCTTCTGGTCCTAGAGGTGAAGCTGAACTGTCACCAGGACTTATGACCCGCGGCTTCGCTCCCATTCTGCCCGTCGAGTTCCACAAGATGGGCTCCTTCCGCAGGCCTAGACCGCGCTTCA 5 0.846101335855431 0.954634774970838 0.520425064527504 N Y 3.37399265761195 3.2761486336232104 3.2761486336232104 0 0.9946373361788292 0.0 Y 0.0 N Y 2865 156 ENSG00000179241 ENSG00000135362 + - 11 11 36253686 36486754 coding utr5p LDLRAD3 PRR5L 35965531 36317838 + + 0.0 36120011 36422547 + - N - - N SA470 1 0.0 1.0 1 0 1 Y N 0.0 0.0 11 1.17899979739626 1.25025802690923 1.25025802690923 1.17899979739626 4 - - 0.9927735180064732 HCT116-unstranded 10.0 223112 ACAACCTGTGAGGAAGAACAAAATGGCCTCTAATATCTTTGGGACACCTGAAGAAAATCAAGCTTCTTGGGCCAAGTCAGCAGGTGCCAAGTCTAGTGGTGGCAGGGAAGACTTGGAGTCATCTGGACTGCAGAGAAGGAACTCCTCTGAAGCAAGCTCCGGAGACTTCTTAGATCTGAAGGGAGAAGGTGATATTCATG|GATAAAGTGGCCAGTGTGTACGAAGCCCCGGGCTTTTTCCTGGACCTGGAGCCCATCCCGGGAGCCTTGGACGCTGTGCGGGAGATGAACGACCTACCGGACACGCAGGTCTTCATCTGCACCAGCCCCCTGCTGAAGTACCACCACTGTGTGGGTGAG 14 0.662412629472207 0.387407918334312 0.740712706806432 Y Y 3.43101850966944 3.5240772547391304 3.43101850966944 0 0.0 0.0 Y 0.0 N N 25559 7205 ENSG00000189159 ENSG00000125458 + - 17 17 73164376 73127890 coding coding HN1 NT5C 73131343 73126320 - - 0.0 73142761 73127376 - + N - - N SA470 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 6 1.28912615209811 0.99113719231664 1.28912615209811 0.99113719231664 4 - - 0.964603760603448 HCT116-unstranded 10.0 215365 TAGGGGCGGGGCAGCCACACCTTCTCACCCACACAGTGGTGGTACTTCAGCAGGGGGCTGGTGCAGATGAAGACCTGCGTGCTGCGGAGAAGGACGCGGTTACCGCCGGGAGCCAGGAGCCCGCCCAGGACTCCGCCCGCCCCCCTCTCTCCTTACTCCG|ATGTATCTTATTACTGTACCTCAGCCAGGCACAGCGGCTCACACCTGTAATCCCAGAATTTTGGGAGGCCAAGGCAGGAAGATCAACATGAACCCAGGACCAGCCGGGGGAAACATAGCAAAACCCTGTCTCTACAGAAACTACAAAAATTGGCCAAGCACGGTGGCTCACGCCTGTAATC 1 0.904012925550928 0.981208948402023 0.944735449367734 Y Y 2.9380884529813 3.7207983724865095 2.9380884529813 0 0.0 0.0 Y 0.0 N N 7205 25559 ENSG00000125458 ENSG00000189159 - + 17 17 73127890 73164376 coding intron NT5C HN1 73126320 73131343 - - 0.0 73127279 73136754 + - N 1.74678506939054 2.48158589314837 N SA470 4 0.8358208955223879 1.6 1 1 3 N Y 0.0 0.8358208955223879 5 0.7579284411833129 0.8680547958851621 0.8680547958851621 0.7579284411833129 4 443.6 1660.8 0.923156770690071 HCT116-unstranded 10.0 2888 CAGGTCCTCTGCTACCCAGGCCAGCTCAGAACCCGACCCCCACCACCGCCGTCAATTCCACTCGTCCATGACTCTCCAGCCCGGCATAGCAGAAAGGGGCTTCAGAGGAGCCAGACTTGCAGTCAGATCCTGGCTCTGCCTCCTTCTAGCTGTGGGACCCTGGCCAAGACACTTCAGTTTTCTGAACCTCCATTTCCTCAT|AAAGGAGGCAGGACAGGAAAGGGTTCAATGTTCAGTTTCCTTTAATGACCCCCATCTCCCTGAAGGGCAGGTGCAGGCAGCTAGGTGATGGCAAGAGATGTTCACTTGAAGATCTTGCCCTGATTGAAGGCTTTGCCCACATGCTGGAAGGCCCCCTCCCAGGAAAAGTACTCTCGAACCAGCGTCTGGGTCTCCT 18 1.0 0.919287623627524 0.5906705735921529 Y Y 3.47655676017605 3.23321088898968 3.23321088898968 0 0.0 0.0 Y 0.0 N N 41607 243388 ENSG00000124942 ENSG00000254772 - + 11 11 62323719 62342401 intron downstream AHNAK EEF1G 62201016 62327073 - - 0.0 62304316 62327050 + - N 16.4800621185104 - N SA470 4 0.6218905472636821 2.7727272727272703 1 18 1 N Y 0.6218905472636821 0.0 22 1.30208219382774 1.327994277287 1.327994277287 1.30208219382774 4 4.77272727272727 - 0.9206953249401758 HCT116-unstranded 10.0 376138 AGGAAGTGAGCTCACTGTCTTTATCACACCTCCCGAGGAGCCTGCCTTACCAGAGGGCAGTGAATCCACTCCCCAGTACTGCTATGATGGATTCCCAGAGCTACGGGCTGAGTTGTTTGAGTCTCTTCAAGAGCAACCTGGGGCCCTGCCTGTGCCAGGCCCTTCCCGTAGCGCCCCCAGCAGTCCTGCTCCTCGCCGTACCAAACAGGA|TGGATAGAATGACAGAAGATGCTCTTCGCTTGAATCTGTTGAAGCGGAGCTTGGACCCAGCAGATGAGCGAGATGATGTCCTGGCAAAGCGACTCAAAATGGAGGGGCATGAGGCCATGGAACGTCTGAAAATGTTGGCATT 5 0.750039489300189 0.32545030816906 0.493189748073925 Y Y 3.3880901126057297 3.64081336021051 3.3880901126057297 0 0.0 0.0 Y 0.0 N Y 3366 5261 ENSG00000198837 ENSG00000143614 + - 1 1 153919172 153895451 coding coding DENND4B GATAD2B 153901977 153777201 - - 0.0 153909964 153800824 - + N - - N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 6 0.7838405246425719 0.7061042742647959 0.7838405246425719 0.7061042742647959 4 - - 0.969218386828328 HCT116-unstranded 10.0 860616 ATAGAGATCAACCCATACCTGCTAGGCACCATGGCTGGGGGCGCAGCGGATTGCAGCTTCTGGGAACGGCTGTTGGCTCGGCAATGTCGAATCTATGAGCTTCGAAATAAGGAACGCATCTCTGTAGCAGCTGCCTCCAAACTGCTTGCCAACATGGTGTATCAGTACAAAGGCATGGGGCTGTCCATGGGCACCATGATCTGTGGCTGGGATAAGAGAGGCCCT|GACCCTACAGCTTGGGGCCTGGGCTCCTCTGACCATCCTCATTGAGAAAGGAAAGTGAGTCCAGAGAAGTTGATGCTTCCTACCTGTTGGAGCGGCCCAGCAGTGTAAGCGTGGTTGTTACTGCCCCATCCGCCATGTCCTTCAGTGCCACCATTCTCTTCTCCCCTCCCAGTGGCAGCGAGGCCAGATGCTGCTGCTGCGCCT 7 0.7612822052044749 0.7304710952202199 0.5369129034289299 Y Y 3.4268022922038504 3.28189243439864 3.28189243439864 1 0.995109439124487 0.0 Y 0.0023255813953488897 N Y 25587 455 ENSG00000100804 ENSG00000100802 + - 14 14 23504439 23479375 coding utr5p PSMB5 C14orf93 23485752 23456110 - - 0.0 23502577 23468365 - + N - - N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 17 1.2373019851796 1.28912615209811 1.28912615209811 1.2373019851796 4 - - 0.9927735180064732 HCT116-unstranded 10.0 382941 GCAGTGGCTGTATCCTCTTGGGGTCTCCACAGAGCTCATTGGCCTGTGCATCTGTTTCTTCTGTAGCAGTGGCTGTATCTTCTTGGGGTCTCCACCG|CAGTGTCAAACCAGAAGAGAAGTAAAATTCAACAAAAATTTATGTGTGGAGTTCCTTCTTAAAAGAAGAAAAAAGTGATTATTTAGACTATGGATCGGAGCAAACGGAATTCAATTGCAGGATTTCCTCCACGTGTGGAGCGTCTTGAAGAGTTTGAAGGAGGTGGTG 3 0.156568268400965 0.680963058596127 0.509760519950985 Y Y 3.54400240599166 3.08359030017893 3.08359030017893 0 0.0 0.0 Y 0.0 N Y 149 898 ENSG00000236624 ENSG00000070759 + - 1 1 45965751 45956872 coding utr5p CCDC163P TESK2 45959538 45809555 - - 0.0 45965017 45923543 - + N - - N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 5 0.829186670696274 0.680192190805537 0.829186670696274 0.680192190805537 4 - - 0.908817252758232 HCT116-unstranded 10.0 220487 AGCCAAAAACCTGTATATCATCTCCGTGAAGGGGATCAAGGGACGGCTGAACAGACTTCCCGCTGCTGGTGTGGGTGACATGGTGATGGCCACAGTCAAGAAAGGCAAACCAGAGCTCAGAAAAAAGG|GAAGCCTTCTGCCCCTCAACCTCACCAGCCCTTGGCTTTTCAGCCCAGAGTCTCAGGACACTTGTGGATTGCGTGTTCAGCATGGGGAATGCAAGTGACTACGCCTGGTTGGCATCCCATACCACACCCAGGGGAATGGGGAAGCCAAGAGGTGGGCTGAATGCAGGCTCAGGCCTCTCTCTCCTTGTCCCCAAGGGCATTCTCTCCAGCAGGTGACTGGGCAT 7 1.0 0.535189343800857 0.733069789235215 Y Y 2.99508379981525 3.22423474015539 2.99508379981525 0 0.0 0.0 Y 0.0 N N 73676 131 ENSG00000125691 ENSG00000214556 + - 17 17 37010096 36997708 coding intron RPL23 C17orf98 37004118 36991341 - - 0.0 37008857 36991794 - + N - 4.28994013062409 N SA470 8 0.0 4.0 2 5 3 Y Y 0.0 0.0 5 0.699626253399981 0.8421427124259041 0.8421427124259041 0.699626253399981 4 - 5.8 0.9076989870774872 HCT116-unstranded 10.0 222636 GTGTGGGTGACATGGTGATGGCCACAGTCAAGAAAGGCAAACCAGAGCTCAGAAAAAAGGTACATCCAGCAGTGGTCATTCGACAACGAAAGTCATACCGTAGAAAAGATGGCGTGTTTCTTTATTTTGAAGATAATGCAGGAGTCATAGTGAACAATAAAGGCGAGATGAA|AGGGCATTCTCTCCAGCAGGTGACTGGGCATGACCACTACAATGCTGATCTGAAACCGATCGATGGGTTCAATGGAAGGTTTGGCTACCGCAGGAACACTCCAGCCCTCCGTCAGAGCACGTCCGTCTTCGGAGAGGTCACCCACTTCCCTCTGTTCTAACAGCATCTTTTCCCTTCATAGCCATCGACCTGAAT 27 0.8838735155131591 0.7274435566894001 0.7474552739417291 Y Y 3.43953999775712 3.5429693362217702 3.43953999775712 1 0.0 0.0 Y 0.0 N Y 73676 131 ENSG00000125691 ENSG00000214556 + - 17 17 37010096 36997708 coding coding RPL23 C17orf98 37004118 36991341 - - 0.0 37006615 36991599 - + N - - N SA470 5 0.0 2.59259259259259 2 27 1 Y Y 0.0 0.0 27 1.13365365134256 1.30856021469256 1.30856021469256 1.13365365134256 4 - - 0.922518911032461 HCT116-unstranded 10.0 3488 AGAAGATCAAGTCAGACCATCCTGGCATCAGCATCACGGATCTTTCCAAGAAGGCAGGCGAGATCTGGAAGGGAATGTCCAAAGAGAAGAAAGAGGAGTGGGATCGCAAGGCTGAGGATGCCAGGAGGGACTATGAAAAAGCCATGAAAGAATATGAAGGGGGCCGAGGCGAGTCTTCTAAGAGG|TCTGCAGCCACCCCAGCTCATACCTCTCTGCCTCCCCGCTCTCAAGGAGGGTCTGCCGCATGTGATGAAAGTGTCTACTCTCAGGGAAAGCTCAGCCATGGCTTCCCCACTGCCCCGGGAGATGGAGGAGGAGCTGGTGCCTACTGGCTCTGAGCCAGGTGACACTCGGGCCAAACCCCCTGTCAAGCCCAAACCCCGGGCCCTGCCTG 9 0.82038886562519 0.25870513679439 0.233717316312284 Y Y 3.36551102231762 3.05224698051854 3.05224698051854 0 0.0 0.0 Y 0.0 N Y 58021 3573 ENSG00000149136 ENSG00000149115 + - 11 11 57103351 57092426 coding utr5p SSRP1 TNKS1BP1 57093459 57067112 - - 0.0 57094900 57089424 - + N - - N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 7 0.926356983668494 1.28912615209811 1.28912615209811 0.926356983668494 4 - - 0.9323197639072408 HCT116-unstranded 10.0 167919 TGAGCAACTTGCAGGTTATTCTCGTCATCGTGTCCGCTTTCAGTCGCATGGGCTGGAAGGATTGAATAAGGAAATAATGATGGAACTGGGTCGAATTTCTTCTAGAAATCTTGGTCGTGATGACAGAGTTATTGGTGATCATGGAAAAGAAGCAAG|GTTTGACTGATATTACAAAGGATCCAGACTTTAATGAAATCTATGATGAAGACGTGAATGAAGATCCAACATATGATCCCAACAGCCCTGAAGAAACAGCTGTATTTATGAAATATGCTGAAAATATTATGCTAAAGTTAACATTCAGTACCACACAAATTCAACAG 11 0.350114203626891 0.459874216955092 0.771947401275644 Y Y 3.4001654707496898 3.3844963897561 3.3844963897561 0 0.0 0.00308641975308632 Y 0.00308641975308632 N Y 2463 97 ENSG00000138381 ENSG00000151687 + - 2 2 190535557 190625919 coding coding ASNSD1 ANKAR 190526146 190539016 + + 0.0 190532671 190554253 + - N - - N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 7 0.738494378588869 0.932835004533309 0.932835004533309 0.738494378588869 4 - - 0.97685775443224 HCT116-unstranded 10.0 796363 AGACAGTGGCCAAGAACAAGGACCAGGGCACCTATGAGGATTATGTCGAAGGACTTCGGGTGTTTGACAAGGAAGGAAATGGCACCGTCATGGGTGCTGAAATCCGGCATGTTCTTGTCACACTGGGTGAGAAGATGACAGAGGAAGAAGTAGAGATGCTGGTGGCAGGGCATGAGGACAGCAATGGTTGTATCAACTATGAAG|GCCGAGTGACCAAGACAAAGGACGGGCATGAGGTTCGGACCTGCAAAGTGGCGGACAAAACAGGCAGCATCAATATCTCTGTCTGGGACGATGTTGGCAATCTGATCCAGCCTGGGGACATTATCCGGCTCACCAAAGGGTACGCTTCAGTTTTCAAAGGTTGTCTGACACTATATACTGGCCGTGGGGGTGATCTGCAGAAG 12 0.860284181159516 0.6300723380190429 0.588015456978037 N Y 3.59528445727371 3.5010341561346 3.5010341561346 0 0.0 0.0 Y 0.0 N Y 31931 5100 ENSG00000092841 ENSG00000139579 + - 12 12 56557280 56623638 coding coding MYL6 NABP2 56551945 56615799 + + 0.0 56554104 56619157 + - N - - N SA470 2 0.0 1.09090909090909 1 1 1 Y N 0.0 0.0 11 1.16604375566664 1.29560417296293 1.29560417296293 1.16604375566664 4 - - 0.985231059099993 HCT116-unstranded 10.0 941787 GCAGTGTGTGGGCTACAGCCGCAGCACAGCGGCCCCCCTCACGATGACTATGTGCCTGCCTGACCTGAAGGAGATCCAGAGGGCTGTGAAGCTCTGGGTGAGGTCGCTGGATGCCCAGTCGGTCTACGTTGCTACTGATTCCGAGAGTTATGTGCCTGAGCTCCAACAGCTCTTCAAAGGGAAG|ATGGGAAACTGAGGCACGAGATACCAGAGGATGGAGTCAGGCCACGTTGTGCGCCACTCTCCCCGCTTAGGTGGGTGAGGAGACCGAGGTGTGTTGGGCCCCCGCTAAACACCAGCACCGACCTGAGCCCCGCCCAGACCCCTCCAGCCGGCTTTCCCTGTCCTCTG 2 0.888823126173312 0.600631311216706 0.8607315860137059 Y Y 3.62617734898681 3.41997622129536 3.41997622129536 0 0.0 0.0 Y 0.0 N N 5951 5440 ENSG00000101346 ENSG00000101350 + - 20 20 30826470 30922814 coding upstream POFUT1 KIF3B 30795683 30865467 + + 0.0 30818864 30865201 + - N - - N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 5 0.7708844829129431 0.576543856968503 0.7708844829129431 0.576543856968503 4 - - 0.989660604587084 HCT116-unstranded 10.0 966492 GGTCCGCGGCTTCTCGCTGCTCCGCGGCCGCCTTGGCCGAGCGCCGGCGTTGGGCAGAAGCACAGCACCCTCCGTAAGGGCACCGGGAGAGCCCGGGAGTGCGTTCCGGGGCTTTCGGAGCAGCGGTGTGAG|GTAACAGGAAACCAGTGTTTCAAAAGAAAACTTGATCACATTGCTAGATAATACAGGTATCCTAACCAAGTGCGTGAGCGCCCAGAGGCTTTCTGCTGCTGCCAGAAGTACATATTTTTTTGA 2 0.0181795412152904 0.295108057946385 0.5 Y Y 3.27039548527796 3.32320511986986 3.27039548527796 0 0.991901676829268 0.0 Y 0.0 N N 1303 355 ENSG00000163738 ENSG00000182585 + - 4 4 75168816 75181024 coding upstream MTHFD2L EPGN 74979891 75174190 + + 0.0 75023998 75174002 + - N - - N SA470 1 0.0 1.0 1 0 3 N Y 0.0 0.0 5 0.7449723994536841 0.686670211670352 0.7449723994536841 0.686670211670352 4 - - 0.9857161316060832 HCT116-unstranded 10.0 1136373 GTTGATATTCTTGCTCAGAGGCCGTAACTTTGGCCTTCTGCTCAGGGAAGACTCTGAGTCCGACGTTGGCCTACCCAGTCGGAAGGCAGAGCTGCAATCTAGTTAACTACCTCCTTTCCCCTAGATTTCCTTTCATTCTGCTCAAGTCTTCGCCTGTGTCCGATCCCTATCTACTTTCTCTCCTCTTGTAGGCAAGCCTCAGACTCCAGGCTTG|AGGAGACCCCCTTCCCACAGAAAGCCGACTCATGAACAGCTGTCTCCAGGCCAGGAGGAAGTGCCAGGCTGATCCCACCTGCAGTGCTGCCTACCACCACCTGGATTCCTGCACCTCTAGCATAAGCACCCCACTGCCCTCAGAGGAGCC 11 0.6002399961164909 0.459874216955092 0.6192968042370961 N Y 3.4529352525482406 3.32743068490526 3.32743068490526 0 0.0 0.0 Y 0.0 N Y 482 75 ENSG00000158402 ENSG00000146013 + - 5 5 137674044 137610360 utr5p intron CDC25C GFRA3 137620954 137588068 - - 0.0 137667284 137600237 - + N - 5.21445718858362 N SA470 1 0.0 1.0 1 0 2 N N 0.0 0.0 5 1.14660969307219 0.7644064620481279 1.14660969307219 0.7644064620481279 4 - 0.4 0.994090006793282 HCT116-unstranded 10.0 374684 GCAAAATGGAGCTAGAGCCCCAGCATTATGACGTGGACATCAATAAGGAGCTCTCCACTCCAGACAAAGTCCTCATCCCTGAACGGTACATTGACCTGGAGCCTGACACTCCCCTGAGCCCTGAGGAGTTGAAGGAGAAGCAGAAGAAGGTGGAGAGGATCAAGACACTCATTGCCAAATCCAG|CTGTTCCGGAGACTTCAAGGCACTAGCTCGATGGTCTGAAAAACAGAGATGAGCTCCTTGAACTTGGATCATTGGTTGAGGGGGCTAGAGGGAGAATGGGAACCACCCCCTCAGTCCCCTGCACTGACTCACTCCCCGACATATCCGGACCTCCCCAAGTCCAGAAGGAAGGAATGGAGCTGAGCAACTGACGTCAA 7 0.906033700960774 0.855859737703186 0.14785082427877402 Y Y 3.51529944499772 3.85272778345386 3.51529944499772 0 0.0 0.0 Y 0.0 N Y 1748 114 ENSG00000143850 ENSG00000174567 + - 1 1 204346793 204183220 coding coding PLEKHA6 GOLT1A 204190349 204167288 - - 0.0 204197856 204167624 - + N - - N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 5 1.09478552615367 1.12717563047775 1.12717563047775 1.09478552615367 4 - - 0.988958290693176 HCT116-unstranded 10.0 222808 GGAAGGGCACATGACCCAATGTATGACCAGTAAAAATCCTCCACAGTGTTGTTTGTTTCTAGCTTTGTGGAGAGTGTGAGACGCCTTTCTGTTCTCTTGAGAGCTCAAGCTGGGTATCAGCTTGTCCATCTTTCATGTCCAGGAGATCGCTGT|CCGAGTGAATGACAGGGACCATCAGGCGACAGATTGAAGGGCAGAGGGAGGCAGCACCCTCCGAGAGTTGGCCCGGACCCAAGGGTGGGCTGAGACCTGGGCCAGGGGCAGCCGTTCCGAGGGGTTATGCCTGAGCAGTTTGGAGATGAGGTCCTGGGCTCCCATGGGC 5 0.951698456876296 0.43053283483436505 0.5610615980426871 Y Y 3.56591914887046 3.50165665075055 3.50165665075055 0 0.0 0.0 Y 0.0 N N 1440 9226 ENSG00000196544 ENSG00000178999 - + 17 17 8093564 8113918 upstream utr3p C17orf59 AURKB 8091652 8108056 - - 0.0 8095818 8108168 + - N - 0.629316707944042 N SA470 2 1.0 1.14285714285714 1 1 2 N Y 1.0 0.0 7 0.8874888584796059 1.0235272966407098 1.0235272966407098 0.8874888584796059 4 - 113.857142857143 0.98267274455016 HCT116-unstranded 10.0 166423 GGGAAATTGTTCAGATTATTCTCTCCCGTGGTCACAGGACAAGCAGTTTTGTTGACTGGAAGGAGCTAAAACTTGTTTATAAAAG|TGATTATTTTCTCTTGGTTCTTTGAAAAACCTCGCTTGTGCTGGGGTTTGTGGCTGAACCCGGTGACGTCAGTGTGGCAGTGCGGAGTCAGGCGCAGCGGCTCCCTATAAGCAGAGGAGCTGTCCGTGTGCTGAAACGGCCCGAGAAGCTCGCCCGGAGAACGGGGAGGAATATGCTGTGGAGCTCCTCTGCCATATAAACA 4 0.1489490867494 0.618239810872359 0.531972122059432 N Y 3.23065023590994 3.2338028783821 3.23065023590994 7 0.0 0.0 Y 0.0 N N 2634 5973 ENSG00000152056 ENSG00000171951 + - 2 2 224702744 224467221 coding utr5p AP1S3 SCG2 224616403 224461658 - - 0.0 224642408 224467211 - + N - - N SA470 1 0.0 1.0 1 0 3 N N 0.0 0.0 8 0.9781811505870108 0.952269067127752 0.9781811505870108 0.952269067127752 4 - - 0.975952906301234 HCT116-unstranded 10.0 1098663 CAGGGAACTAGTCGCCATCAAGAAGGTTCTCCAGGACAAGAGGTTCAAGAACCGAGAGCTGCAGATCATGCGTAAGCTGGACCACTGCAATATTGTGAGGCTGAGATACTTTTTCTACTCCAGTGGCGAGAA|GACATCCGGCTCCGGGTTCGAGCAGAGTACTGCGAGCATGGGCCAGCCTTGGAGCAGGGCGTGGCATCCCGGCGGCCCCAGGCGCTGGCGCGGCAGCTGGACGTGTTTGGGCAGGCCACCGCAGTGCTGCGCTCAAGGGACCTGGGCTCTGTGGTTTGTGACATCAAGTTCTCAGAGCTCTCCTATCTGG 2 0.0174890120222204 0.8293337545952479 0.93696716815657 N Y 3.67167574670007 3.72655152083176 3.67167574670007 0 0.0 0.0 Y 0.0 N Y 6641 2642 ENSG00000105723 ENSG00000160570 + - 19 19 42746777 42721813 coding coding GSK3A DEDD2 42734338 42702752 - - 0.0 42741010 42703981 - + N - - N SA470 1 0.0 1.0 1 0 2 N N 0.0 0.0 5 1.09478552615367 1.03648333837034 1.09478552615367 1.03648333837034 4 - - 0.987994885374266 HCT116-unstranded 10.0 1099581 GAACTGCGATGTCTGGGAACCCAGCTGCCTAACAACCGCCCACTTCCCCCTCTCTTCAACTTCAGTGCTGGTGAACTCTCCATCCAACCGTCTCTCAACGCCATTCTTATCCCTCCTCACTTGAGGTCCCCAGCGGGCACTACCACCCTCACCCCGTCCTCACAAG|ACATCCGGCTCCGGGTTCGAGCAGAGTACTGCGAGCATGGGCCAGCCTTGGAGCAGGGCGTGGCATCCCGGCGGCCCCAGGCGCTGGCGCGGCAGCTGGACGTGTTTGGGCAGGCCACCGCAGTGCTGCGCTCAAGGGACCTGGGCTCTGTGGTTTGTGACATCAAGTTCTCAGAGCTCTCCTAT 7 0.795843482381635 0.7684566420119391 0.473614822550159 N Y 3.06316128781662 3.73912139251568 3.06316128781662 0 0.0 0.0 Y 0.0 N Y 6641 2642 ENSG00000105723 ENSG00000160570 + - 19 19 42746777 42721813 coding coding GSK3A DEDD2 42734338 42702752 - - 0.0 42736209 42703981 - + N - 3.4392035423062 N SA470 1 0.0 1.0 1 0 1 Y N 0.0 0.0 7 1.01057125491108 0.90692292107405 1.01057125491108 0.90692292107405 4 - 31 0.979217423911028 HCT116-unstranded 10.0 1100148 CAGATAGGAGAGCTCTGAGAACTTGATGTCACAAACCACAGAGCCCAGGTCCCTTGAGCGCAGCACTGCGGTGGCCTGCCCAAACACGTCCAGCTGCCGCGCCAGCGCCTGGGGCCGCCGGGATGCCACGCCCTGCTCCAAGGCTGGCCCATGCTCGCAGTACTCTGCTCGAACCCGGAGCCGGATGTCT|TGAACCTCTTGTCCTGGAGAACCTTCTTGATGGCGACTAGTTCCCTGGTCTCTGCCAGCCGTGCCTGGTACACGACCCCAAATGAGCCATTGCCAATCACTTTGATGTCCGTGTAAGCCACTTCTTGGGAGCGCTCTGGGCCTTGGCCTAGAGTGGCTACGACT 7 1.0 0.551812886677041 0.331124106603563 N Y 3.6852786881538906 3.650822578814701 3.650822578814701 0 0.0 0.0 Y 0.0 N Y 2642 6641 ENSG00000160570 ENSG00000105723 - + 19 19 42721813 42746777 intron coding DEDD2 GSK3A 42702752 42734338 - - 0.0 42703981 42744107 + - N 3.44377354250285 4.49918573327131 N SA470 1 0.0 1.0 1 0 1 Y N 0.0 0.0 6 1.12069760961293 0.8356646915610891 1.12069760961293 0.8356646915610891 4 35.8333333333333 224.166666666667 0.981554313748411 HCT116-unstranded 10.0 941865 GAACCCAAGAAACTAGAGGAGAATGAGGTTATCCCCAAGAGAATCTCACCCGTTGAAGAGAGTGAGGATGTGTCCAACAAGGTGTCAATGTCCAGCACTGTGCAGGGCAGCAACATCTTTGAGAGAACGGAGGTCCTGG|CAGGTCCCAGGTGTCACACTGGGCCCCTGGATCTGGTGTTCGTGATTGACAGCTCCCGCAGCGTGCGCCCTTTCGAGTTCGAGACCATGCGGCAGTTCCTCATGGGCCTCCTCCGAGGCCTGAACGTGGGTCCCAACGCCACGCGCGTTGGCGTGATCCAGTATTCGAGTCAAGTGCAG 6 0.5107581370473161 0.6107496789519499 0.26572461449676504 Y Y 3.60103760561896 3.31233066536513 3.31233066536513 0 0.0 0.0 Y 0.0 N Y 11364 1075 ENSG00000124145 ENSG00000124159 + - 20 20 43977064 43937169 coding coding SDC4 MATN4 43953928 43922085 - - 0.0 43959006 43933437 - + N - - N SA470 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 5 0.913400941938865 0.9198789628036792 0.9198789628036792 0.913400941938865 4 - - 0.925091895808605 HCT116-unstranded 10.0 732357 AAGTTACAGTTTGGTCGTTATCCAGGAGCTTTTGACAGGCCAGAGTTACAGCAAGTTACTGTTGATGGACTGGAAGTTCTCATTCCAAAGGATCCAATGCACTTTGTAGAAGAAGTACCACACTCTAGGTTTATTGAGTGTAGGTATAAAGAAGCTCGAGCATTCTTTCAG|GAACTCAAACATGACCAGGAAGATCTTCACAAATACCAGGGAGCGGTGGAGGCAGCAGAATGTCAACAGCGCCTTTGCCAAGCTGAGGAAGCTCATCCCCACTCACCCTCCAGACAAAAAGCTGAGCAAAAATGAAACGCTTCGCCTGGCAATGAGGTATATCAACTTCTTGGTCAAGGTCTTGGGGGAGCAAAGCCTGC 5 0.946349813924152 0.279770003537127 0.359970596426195 Y Y 3.5455299893015098 3.38912318237562 3.38912318237562 0 0.0 0.0 Y 0.0 N N 2700 58 ENSG00000106692 ENSG00000186051 + - 9 9 108403399 108425367 coding utr5p FKTN TAL2 108320411 108424738 + + 0.0 108370232 108424768 + - N - 0.133818687250351 N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 5 0.803274587237016 1.25673604777404 1.25673604777404 0.803274587237016 4 - 0.8 0.981848598418504 HCT116-unstranded 10.0 384432 CAAGCACCTCAAATTTGCCATGCTGGCTGGTGGAAGAGTTTGTGGTAGCAGAAGAGTGCTCTCCATGCTCTAATTTCCGGGCTAAAACTACCCCTGAGTGTGGTCCCACAGGATATGTAGAGAAAATCACATGCAGCTCATCTAAGAGAAATGAGTTCAAA|AGGTCTGAGAGTCACTGGAGCTACCAGAAGCATCATGGGGCCCTGGGGAGAGCCAGAGCTCCTGGTGTGGCGCCCCGAGGCGGTAGCTTCAGAGCCTCCAGTGCCTGTGGGGCTGGAGGTGAAGTTGGGGGCCCTGGTGCTGCTGCTGGTGCTCACCCTCCTCTGCAGCCTGGTGCCCATCTGTGTGCTGC 19 0.945049828160997 0.997859016635146 0.606550404849593 Y Y 3.3091076648760898 3.56591914887046 3.3091076648760898 0 0.993806415286893 0.0 Y 0.0 N Y 10540 5117 ENSG00000143543 ENSG00000143570 + - 1 1 153950164 153940188 coding utr5p JTB SLC39A1 153946745 153931575 - - 0.0 153948302 153935223 - + N - - N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 8 1.0623954218296 0.952269067127752 1.0623954218296 0.952269067127752 4 - - 0.9942315411823952 HCT116-unstranded 10.0 692022 CATGTAGAGACTGCTGGCCACAATATTGACACCTGTTACCATGTATCAATCACAGAGAAGACCTGCCGAGGATTCCTCATCAAAATGGGTGGGAAAATTAAAACGTGGAAAAAACGTTGGTTTGTTTTTGATCGGAACAAGCGAACATTCTCTTATTATGCAGACAAGCATGAAACTAAATTGAAAGGAGTAATATACTTTCAAGCCATTGAAGAAGTCTATTATGATCACCTCAAGAATGCTAATAAGA|TTCTTGTTGGATCTAGCCTTGGAGGGTGGCTTATGCTTCATGCTGCAATTGCACGACCAGAGAAGGTCGTGGCTCTTATTGGTGTAGCTACAGCTGCAGATACCTTAGTGACAAAGTTTAATCAGCTTCCTGTTGAGCTAAAAAAGGAAGTAGAGATGAAAGGTGTGTGGAGCATGCCATC 3 0.31958065514699296 0.860133563416507 0.804087644195504 Y Y 3.53568860456667 3.45144752203174 3.45144752203174 0 0.0 0.0 Y 0.0 N Y 13261 4835 ENSG00000144824 ENSG00000144827 + - 3 3 111695364 111712210 coding coding PHLDB2 ABHD10 111451344 111697857 + + 0.0 111692664 111705761 + - N - - N SA470 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 5 1.0623954218296 1.07535146355923 1.07535146355923 1.0623954218296 4 - - 0.973332444171362 HCT116-unstranded 10.0 1096848 GCTGCCATAAGGAGTCTGTGACTAGAGATGGGAGGTGGTGGCCACGGCCTCTCGCTGTATGCTGTGTGGAAGGTCGAATCATCATCATCATAAAACTTAATATTGCCCTTATGTGCCAGGAACTACT|ATCTCAGCAATGGAGATGTGGTGCTTGGCCGCAATCGTGAATCGGCCCTGGAGGGGACACAGGAAGGGGCTGCCTGCGACTCATGACCTCCTGCGTGCCTGCCTGCTGACCTATGACCCTTCAAGTTCCCACCCCTCAGCCACGCCTGTGAGGAGGTATGAAGAAGACCTGAGGTGTGAAGAAGATCGAGAGGTGGGGGAACACAGGAGTGAGAAGGGAGGGCC 13 0.7100412374624449 0.8779138450759999 0.7148899368930441 Y Y 3.5816815158199 3.66273010308932 3.5816815158199 0 0.9921483536148892 0.0 Y 0.638824266284896 N N 1267 9049 ENSG00000118162 ENSG00000105402 - + 19 19 47987521 48018497 upstream coding KPTN NAPA 47978400 47990891 - - 0.0 47987781 47996704 + - N - 1.49020176550666 N SA470 1 0.15841584158415806 1.0 1 0 1 N Y 0.15841584158415806 0.0 5 0.654280107346279 0.492329585725913 0.654280107346279 0.492329585725913 4 - 268.8 0.9811172776726008 HCT116-unstranded 10.0 616009 ATGGGAAAATTAAAATGATTGACATGCCCGTGGAAAGGATGCATCCCCATCTGTCCAAAGGCTATGCGTACGTAGAGTTTGAGAATCCAGATGAAGCCGAGAAGGCGCTGAAGCACATGGATGGAGG|GGTCGCTGTGATGAAATTCAAGAACCCCCCAGTGAACAGCCTGAGCCTGGAGTTTCTGACGGAGCTGGTCATCAGCCTGGAGAAGCTGGAGAATGACAAGAGCTTCCGCGGTGTCATTCTGA 17 9.03871958616214e-06 0.828817239340406 0.382788473201078 Y Y 3.3514042197540297 3.57063922744582 3.3514042197540297 3 0.99183606557377 0.0 Y 0.0 N Y 40719 8864 ENSG00000205937 ENSG00000167969 + - 16 16 2318413 2302301 coding coding RNPS1 ECI1 2303117 2289396 - - 0.0 2312279 2296987 - + N - - N SA470 2 0.112299465240642 1.9 1 9 2 Y Y 0.0 0.112299465240642 10 1.33447229815182 1.21138990172034 1.33447229815182 1.21138990172034 4 - - 0.9186632250182292 HCT116-unstranded 10.0 215785 CAAGAGTGAAGTACCTGAATGTAGAAACAATGAGGATGGACCTGGTTTAATAATGGAAGAACAGCACAAGTGTTCTTCAAAGAGCCTTGAACATAAAACACAGACACTTCCTGTGGAGGAGAATGTAACTCAGAAAATTAGTGACCTGGAAATTTGTGCTGATGAGTTTCCTGGATCCTCAGCCACCTACCGAATACTGGAGGTTGGCTGTGGTGTGGGAAACACAGTCTTTCCAATTTTACAAACGAACAATGACCCAGGACTCTTTGTTTATTGCTGTGATTTTTCTTCCACAGCTATAGAACTGGTC|CAGAAATGATGGAAGAATTGCATAGCCTGGACCCACGACGGCAGGAATTATTGGAGGCCAGGTTTACTGGAGTAGGTGTTAGTAAGGGACCACTTAATAGTGAGTCTTCCAACCAGAGCTTGTGCAGCGTCGGATCCTTGAGTGATAAAGAAGTAGAGCGACGAGTAGAACAGCCCCTCTATGGTTTAGATGGCAGTGCTGCAAAGGA 2 4.29210178572484e-05 0.8293337545952479 0.957377285353531 Y Y 3.63296356710195 3.51360402781852 3.51360402781852 0 0.0 0.0 Y 0.0 N Y 3309 2989 ENSG00000087995 ENSG00000146872 + - 17 17 60527454 60692842 coding utr5p METTL2A TLK2 60501228 60536019 + + 0.0 60512653 60558485 + - N - - N SA470 8 0.0 5.6 4 5 2 N Y 0.0 0.0 5 1.14660969307219 1.06887344269442 1.14660969307219 1.06887344269442 4 - - 0.9343095537338 HCT116-unstranded 10.0 222913 TGAAGTACCTGAATGTAGAAACAATGAGGATGGACCTGGTTTAATAATGGAAGAACAGCACAAGTGTTCTTCAAAGAGCCTTGAACATAAAACACAGACACTTCCTGTGGAGGAGAATGTAACTCAGAAAATTAGTGACCTGGAAATTTGTGCTGATGAGTTTCCTGGATCCTCAGCCACCTACCGAATACTGGAGGTTGGCTGTGGTGTGGGAAACACAGTCTTTCCAATTTTACAAACGAACAA|GCCAACTGTGATTTGAGACGGCAGATTGATGAACAGCAAAAGATGCTAGAGAAATACAAGGAACGATTAAATAGATGTGTGACAATGAGCAAGAAACTCCTTATAGAAAAGTCAAAACAAG 3 0.88226676487177 0.613472033482227 0.5871409592840799 Y Y 3.3170507439404906 3.45297510534159 3.3170507439404906 0 0.0 0.0 Y 0.0 N Y 3309 2989 ENSG00000087995 ENSG00000146872 + - 17 17 60527454 60692842 coding coding METTL2A TLK2 60501228 60536019 + + 0.0 60505198 60637377 + - N - - N SA470 6 0.0 5.75 4 8 2 N Y 0.0 0.0 8 1.19843385999071 0.6283680238870201 1.19843385999071 0.6283680238870201 4 - - 0.921318277033394 HCT116-unstranded 10.0 690544 CAAATGCAGTTACACCTTCTGTTCTCTCAGGACTCTTTGGCCCAAGCTGTGACCCTATGTTTAACTCAAGTACAGCTTTCTGGCAACTCATAATGGCTTCACCTTTTCTCAGTTGCCTTCAACTATTTCTATAAGGATGGATCTTCTTTTTCCTTCAACAGGTG|CTTGATTGTCTGCAGAAACCTCACTCTGTCATTGATCTCATCTGGGATCTTACTGAGAATTTGTTTAAGTGCTCGTGCCTTTTCGTTTAGGTCTTGGAATTCTGGCTCTGGTCGTTCAATCATATACTCTGATAAAATAAATACATAATA 8 0.910112207108352 0.506687682779376 0.755300736725552 Y Y 3.44359772892318 3.3833700340303703 3.3833700340303703 0 0.0 0.0031746031746031607 Y 0.0031746031746031607 N Y 89 759 ENSG00000174776 ENSG00000114209 - + 3 3 167371771 167452727 utr5p intron WDR49 PDCD10 167196472 167401086 - - 0.0 167371287 167413384 + - N - 0.834090597087925 N SA470 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 7 1.01057125491108 0.9781811505870108 1.01057125491108 0.9781811505870108 4 - 14 0.9913592679763628 HCT116-unstranded 10.0 692727 GTCTCACACAAGACATCATTATGAAAATTTTAGAGAAAAAAAGCGTGGAAGTTAACTTCACGGAGTCCCTTCTTCGTATGGCAGCTGATGATGTAGAAGAGTATATGATTGAACGACCAGAGCCAGAATTCCAAGACCTAAACGAAAAGGCACGAGCACTTAAACAAATTCTCAGTAAGATCCCAGATGAGATCAATGACAGAGTGAGGTTTCTGCAGACAATCA|AGTAATCAGCTCTGATACAGGGTCTACTGTTTCCTTCTGGATGATAGACACTGGGCAGAAAATCAAACAGTTTACTGGTTGCCACGGCAACGCAGAAATCAGCACTATGGCCCTTGATGCAAATGAGACTCGGCTTTTGACTGGCAGC 3 0.769939442529169 0.445128111105557 0.7455606945267449 Y Y 3.3646059336237206 3.57489529770476 3.3646059336237206 0 0.0 0.0 Y 0.0 N Y 759 89 ENSG00000114209 ENSG00000174776 + - 3 3 167452727 167371771 coding utr5p PDCD10 WDR49 167401086 167196472 - - 0.0 167413384 167278016 - + N - - N SA470 1 0.0925925925925926 1.0 1 0 1 Y Y 0.0 0.0925925925925926 5 1.04943938009997 1.0235272966407098 1.04943938009997 1.0235272966407098 4 - - 0.985231059099993 HCT116-unstranded 10.0 1101231 CCCTGCGGGTGAAGAACTTCGGGATCTGGCTGCGCTATGACTCCCGGAGCGGCACCCACAACATGTACCGGGAATACCGGGACCTGACCACCGCAGGCGCTGTCACCCAGTGCTACCGAGACATGGGTGCCCGGCACCGCGCCCGAGCCCACTCCATTCAGATCATGAAGGTGGAGGAGATCGCGGCCAGCAAGTGCCGCCGGCCGGCTGTCAAGCAGTTCCAC|GGCCCTGCTCATCAACCAGGTCGGCCTGTTCCTGATCGTGTCCAGCGCTGCCTGCTGTGGCATCGTCATGTTTGTGTTCTACACTGACTGCGACCCTCTCCTCCTGGGGCGCATCTCTGCCCCAGACCAGTACATGCCTCTGCTGGTGCTGGACATCTTCGAAGATCTGCCTGGAGTCCCCGGGCTTTTCCTGGCCTGTGCTTACAGTGGCACCCT 33 0.7952183121424599 0.8729157919123749 0.645374401669989 Y Y 3.46141688784258 3.64656650855576 3.46141688784258 1 0.0 0.0 Y 0.0 N Y 215216 2233 ENSG00000105640 ENSG00000105641 + - 19 19 17974962 18005982 coding coding RPL18A SLC5A5 17970730 17982782 + + 0.0 17973836 17988773 + - N - - N SA470 9 0.0 4.1025641025641 2 39 9 N Y 0.0 0.0 39 1.4381206319888502 1.40573052766478 1.4381206319888502 1.40573052766478 4 - - 0.957494350298986 HCT116-unstranded 10.0 374623 AGCTTCCTCATGCTTCCAGTAAACCACCCCGGATTTCAGGAAGCCTTGTGGACACTTCATATAAAACATTAAGATTTGCATTCAGAGCATCACTGAAAACTGCCATCTATCGAATAACTACTACATTTGGTGAACATCTGAA|TGAATGGGAGCTACGGACACCGTACCCCGGGCTCAGAGAAGAGCCTGCTGGACCTGGACCTTGCTGAGGGCCCTGGCCCCACCTGCTGCCAGGGCCTGTTTCTCCCTGCAGGAAGCCCACCGCCCCGGGCTCACCCCCAAGCTTGTGAGAGGCTGCTGCATTTCCCCCACCCTGACAGGTCACCTAGACCCCAGGCCACGTATGTGA 4 0.923288519126914 0.61823981087236 0.78879744097589 Y Y 3.54400240599166 3.58064844605001 3.54400240599166 0 0.0 0.00285714285714278 Y 0.0 N Y 9184 52 ENSG00000058804 ENSG00000174332 + - 1 1 54304533 54199877 coding utr5p TMEM48 GLIS1 54231133 53971910 - - 0.0 54238002 54065951 - + N - - N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 5 0.82270864983146 0.8097526081018299 0.82270864983146 0.8097526081018299 4 - - 0.9905002223888258 HCT116-unstranded 10.0 616066 CGCCCTGTGGGTCTGTTCCTGGCCTCTGACGTCCAGCAGCTGCGGCAGGCGATCGAGGAGTGCAAGCAGGTGATTCTGGAGCTGCCCGAGCAGTCGGAGAAGCAGAAGGATGCCGTGGTGCGACTCATCCACCTCCGGCTGAAGCTCCAGGAGCTGA|AGTGGTTATGGCCAGTGAGAATGTGCGGTGTTGCATTGCAGAAGAAGCTAGGAAAGCTCATCTGGCCTCCTGTTCCAGTGCTTCCAGGGGATCCACGTTCAGAAGCTGACTCTGCAGGCAAGACCGACGTTATTTTCCTGGTGGCTGTGTTCAAAACCACCCAAAGGGTTTGA 5 0.657887226378661 0.469514659685865 0.9166584280452752 N Y 3.64759957832565 3.40631984667906 3.40631984667906 0 0.99364981622953 0.0 Y 0.00302114803625364 N Y 9545 10551 ENSG00000140995 ENSG00000223959 + - 16 16 90034468 90068569 coding intron DEF8 AFG3L1P 90014333 90038994 + + 0.0 90024068 90044047 + - N - - N SA470 2 0.0 1.2 1 1 2 N N 0.0 0.0 5 1.04296135923516 0.82270864983146 1.04296135923516 0.82270864983146 4 - - 0.953489763481805 HCT116-unstranded 10.0 1136849 CACGGTTTATGAGGACAAGAGTGGCAAGCAGCGGTACTCCTACCAGTACACGGTGGCCAACAAGGAATACGTCGCCTACAGCCACACGGGCCGCATCATCCCTGCAATCTGGTTCCGCTACGACCTCAGCCCCATCACGGTCAAGTACACAGAGAGACGGCAGCCGCTGTACAGATTCATCACCACGA|GGGTCACCATGAAGTTCAATCCCTTCGTTACCTCGGACCGCAGTAAAAACCGCAAACGTCACTTCAATGCCCCCTCACACGTGCGCAGGAAGATCATGTCATCCCCGCTCTCCAAGGAGCTGCGGCAGAAGTACAATGTCCGCTCCATGCCCATCCGCAAGGACGACGA 12 0.8468587259319029 0.8851160275793759 0.671801336489643 Y Y 3.5969798744529102 3.64553343878587 3.5969798744529102 3 0.0 0.0 Y 0.0 N Y 16293 4425 ENSG00000113719 ENSG00000037241 + - 5 5 172379688 172396774 coding utr5p ERGIC1 RPL26L1 172261278 172385732 + + 0.0 172362313 172386868 + - N - - N SA470 3 0.0 2.45454545454545 2 11 2 Y Y 0.0 0.0 11 1.14660969307219 0.945791046262938 1.14660969307219 0.945791046262938 4 - - 0.941950958874028 HCT116-unstranded 10.0 1134848 CAAATTACTTTGCTCAAAAAACGTGAAGCTGAAGCAAAAATGATGGTTGCTAACAAACCAGATAAAATACAGCAAGCTAAAAATGAAATAAGAGAGAAAGAACGAGTGAAGGATTTTAAAACCGTTATCATCAAGTACTTAGAATCACTAGTTCAAACACAA|CAACAGGTGTTTAAGATAGAAGTGCTAATGAATGGAAGAAAACATTTTGTTGAAAAGAGATACAGCGAATTTCATGCTTTGCACAAAAAGCTTAAGAAATGTATAAAAACTCCAGAAATCCCTTCTAAACATGTTAGGAACTGGGTCCCCAAAGTCTTGGAACAGCG 6 0.779223917745886 0.6206934421561651 0.511887751367701 N Y 3.39271690522525 3.37717580530765 3.37717580530765 0 0.0 0.0 Y 0.0 N Y 1688 337 ENSG00000205302 ENSG00000064652 + - 5 5 122165803 122365049 coding intron SNX2 SNX24 122110691 122179134 + + 0.0 122163341 122272429 + - N - - N SA470 1 0.0 1.0 1 0 1 Y N 0.0 0.0 7 0.90692292107405 1.08830750528886 1.08830750528886 0.90692292107405 4 - - 0.984429675782622 HCT116-unstranded 10.0 1136168 AGGCCATACCCTAAATCACCTTCTGTCATGTCATCCTCTTCTGTTTCCCAGAGCTGCACGTCTGACTCACTTGATGATCTTGCCACCTTGCTCATGAGCCAAATGCCGTCTTTATCATAAGAAAAAATGGGCTGT|CTGGCTTTCGATGACACATTTCCGTCGCAAAGTTGGAGGGTGGGCATAACTCGGGTCGGTACTTCGGGTCAGGCAGTGCGCTGGATGCCTAAGTCACACACTCCTTCGGTGGTCCCCGCCCTTCGCTTGCGCCGACCAGTCTGGAAGGTCCCCGGGAGGCC 5 0.542849313052539 0.726756370958496 0.5610615980426871 N Y 3.45087846057827 3.58217602935986 3.45087846057827 1 0.0 0.0 Y 0.0 N Y 792 16004 ENSG00000183323 ENSG00000085231 - + 5 5 68628636 68665840 utr5p coding CCDC125 TAF9 68576002 68646811 - - 0.0 68616407 68665484 + - N - 4.41477114054418 N SA470 1 0.0 1.0 1 0 1 N N 0.0 0.0 8 0.855098754155533 0.829186670696274 0.855098754155533 0.829186670696274 4 - 101 0.978306722328782 HCT116-unstranded 10.0 1136353 GCAAAGGGCACGTGAGCGAGGCGCCCGAAGCCGTCGCGGCGGGGACCATGTTGCTTCCGAACATCCTGCTCACCGGTACACCAGGGGTTGGAAAAACCACACTAGGCAAAGAACTTGCGTCAAAATCAGGACTGAAATACATTAATGTGGGTGATTTAGCTCGAGAAG|ACAGCCCATTTTTTCTTATGATAAAGACGGCATTTGGCTCATGAGCAAGGTGGCAAGATCATCAAGTGAGTCAGACGTGCAGCTCTGGGAAACAGAAGAGGATGACATGACAGAAGGTGATTTAGGGTATGGCCTCGGAAGGAAACCTGGTGGGATTTATGAAATAGAATTTTCACATAGGTCTAGAAAAAGATCAG 7 0.0302378855140244 0.702399571093687 0.589020273228712 N Y 3.54872248456702 3.45087846057827 3.45087846057827 0 0.0 0.0 Y 0.0 N Y 16004 792 ENSG00000085231 ENSG00000183323 + - 5 5 68665840 68628636 coding utr5p TAF9 CCDC125 68646811 68576002 - - 0.0 68662330 68616407 - + N - - N SA470 1 0.0 1.0 1 0 2 N N 0.0 0.0 14 0.90692292107405 0.9781811505870108 0.9781811505870108 0.90692292107405 4 - - 0.987458959244875 HCT116-unstranded 10.0 732780 TGGAAATGGTGCTAAGATATTTGCCTATGCCTTTGACAAGAACCGAGGAAGGGGCTCTGGGAGACTCCTTCATGAGCTGCTGTGGGAGCGGCACCGGGGGGGCGTGGCCCCGGGCTTCCAGGTGGTGCACCTCAACGCTGTGACCGTGGACAATCGCCTGGACAACCTGCAACTGGTGCCGTGGGGCTGGCGGCCCAAGGCTGAAGAGACCTCCAGCAAGCAGAGGG|GGCGACGATGGCCTTCTGAGGGGCTGGGACACCAGGGTACCCGGCAAATTTCTCTTCACCAGCAAAAGGTAACTGCCCAAGGGCCAGCACTCGGTGCCCACACCAGCCCCCGCGTTCCCTGGGTCACCAGCCCTCCCGTTCCCTGGGTGGGTCTGTGTGCTGGACACTGGTTCAGAAGCCGCC 24 0.628690153966233 0.9170523984055609 0.592233838896571 Y Y 3.2509995426855403 3.5000010863647097 3.2509995426855403 1 0.0 0.0 Y 0.0024330900243309 N Y 5167 6311 ENSG00000165724 ENSG00000148399 + - 9 9 140484942 140473387 coding coding ZMYND19 WDR85 140476531 140449356 - - 0.0 140481419 140459606 - + N - - N SA470 1 0.0 1.0 1 0 2 N Y 0.0 0.0 6 1.23082396431478 0.7773625037777572 1.23082396431478 0.7773625037777572 4 - - 0.994848257334812 HCT116-unstranded 10.0 729800 ATGAGCTGCTGTGGGAGCGGCACCGGGGGGGCGTGGCCCCGGGCTTCCAGGTGGTGCACCTCAACGCTGTGACCGTGGACAATCGCCTGGACAACCTGCAACTGGTGCCGTGGGGCTGGCGGCCCAAGGCTGAAGAGACCTCCAGCAAGCAGAGGG|GGCGACGATGGCCTTCTGAGGGGCTGGGACACCAGGGTACCCGGCAAATTTCTCTTCACCAGCAAAAGACACACCATGGGTGTGTGCAGCATCCAGAGCAGCCCTCATCGGGAGCACATCCTGGCCACGGGAAGCTATGATGAACACATCCTACTGTGGGACACACGAAACATGAAGCAGCCGTTGGCAGATACGCCTGTGCAGGGTGGGGTATGGAGAATCAAGTGGCACCCTTTCCACCACCAC 23 0.723328100483041 0.7953110753355491 0.65632198633716 Y Y 3.2509995426855403 3.5000010863647097 3.2509995426855403 0 0.0 0.00248138957816391 Y 0.00248138957816391 N Y 5167 6311 ENSG00000165724 ENSG00000148399 + - 9 9 140484942 140473387 coding coding ZMYND19 WDR85 140476531 140449356 - - 0.0 140481419 140459606 - + N - - N SA470 1 0.0 1.0 1 0 2 N Y 0.0 0.0 11 1.0235272966407098 1.50937886150181 1.50937886150181 1.0235272966407098 4 - - 0.9937791697056568 HCT116-unstranded 10.0 673357 TTAGACCCAGTGTTCTTGGTCCTCTTAAAAGAAAAGGTGAAATGGAGACAGAAAGTCAGCCCAAGAGACTCTTCCAAGGCACTACCAATATGTTATCTCCAGATGCCGCGCAACTGTCTGATCTCAGTTCAT|GAAATCCTCACTGGACGGCTTCCTGTTTCCTGTGGTTCATTATCTGATTGGCTGCAGGGATGAAAGTTTTTAAGTTCATAGGACTGATGATCCTCCTCACCTCTGCGTTTTCAGCCGGTTCAGGACAAAGTCCAATGACTGTGCTGTGCTCCATAGACTGGTTCATGGTCACAGTGCACCCCTTC 8 0.16032865719555098 0.367937680626812 0.7911603209157421 Y Y 3.7207983724865095 3.52105259334297 3.52105259334297 1 0.0 0.0 Y 0.0 N Y 17364 187 ENSG00000156504 ENSG00000170965 + - X X 133931262 133898352 coding utr5p FAM122B PLAC1 133903596 133699868 - - 0.0 133915851 133700770 - + N - - N SA470 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 6 0.7190603159944251 1.36686240247589 1.36686240247589 0.7190603159944251 4 - - 0.9686031224814 HCT116-unstranded 10.0 672436 CCATCGAGACAAGGTATATGAGCAGCTGGCCAAATACCTTCAACTGAGAAATGTCATTGAGCGACTCCAGGAAGCTAAGCACTCGGAGTTATATATGCAGGTGGATTTGGGCTGTAACTTCTTCGTTGACACAGTGGT|GTACCCCTGGGATGGCGTGAGCACTCCCCCAGCGATGGACCCATCTGTGACGCTGTGGCAGTTTCTGCTGCAGCTGCTGAGAGAGCAAGGCAATGGCCACATCATCTCCTGGACTTCACGGGATGGTGGTGAATTCAAGCTGGTGGATGCAGAGGAGGTGGCCCGGCTGTGGGGGCTACGCAAGAACAAGACCAACATGAATTACGACAAGCTC 5 0.42759904521729 0.7389903329939441 0.231428048719698 Y Y 3.5597647729410897 3.45447218342791 3.45447218342791 0 0.0 0.0 Y 0.0 N Y 4438 6075 ENSG00000126756 ENSG00000126767 + - X X 47518560 47510003 coding utr5p UXT ELK1 47511197 47494920 - - 0.0 47516971 47500874 - + N - 8.53195021635051 N SA470 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 6 1.12717563047775 1.15308771393701 1.15308771393701 1.12717563047775 4 - 68.5 0.951787572088404 HCT116-unstranded 10.0 671070 CGCGGTTCCTACCAACCGTTCTTATTGCTGGCGGCCTGAGGAGCCCATCATGGCGACGCCCCCTAAGCGGCGGGCGGTGGAGGCCACGGGGGAGAAAGTGCTGCGCTACGAGACCTTCATCAGTGACGTGCTGCAGCGGGACTTGC|GGTACCCCTGGGATGGCGTGAGCACTCCCCCAGCGATGGACCCATCTGTGACGCTGTGGCAGTTTCTGCTGCAGCTGCTGAGAGAGCAAGGCAATGGCCACATCATCTCCTGGACTTCACGGGATGGTGGTGAATTCAAGCTGGTGGATGCAGAGGAGGTGGCCCGGCTGTGGGGGCTACGCAAGAACAAGACCAACATGAATTACGACAAGC 4 0.713895620666217 0.75909302346344 0.84202634122934 Y Y 3.68783934123363 3.44190231174398 3.44190231174398 1 0.0 0.0 Y 0.0027777777777778802 N Y 4438 6075 ENSG00000126756 ENSG00000126767 + - X X 47518560 47510003 coding utr5p UXT ELK1 47511197 47494920 - - 0.0 47518229 47500874 - + N - - N SA470 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 17 1.15956573480182 1.1919558391258898 1.1919558391258898 1.15956573480182 4 - - 0.973332444171362 HCT116-unstranded 10.0 113086 AAGTACAAGTTGTGCAAAGTGAGGAAGATTACTGTGGGAGTGAAGGGAATCCCTCACCTGGTGACTCATGATGCTCGAACCATCCGCTACCCAGATCCTGTCATCAAGGTGAACGATACTGTGCAGATTGATTTAGGGACTGGCAAGATAATCAACTTTATCAAATTTGATACAGG|AGCTGATGCTACACACATGGATGGTGATCAGATTGTTGTGGAAATACAAGAAGCAGTTTTTGTTTCTAATATTGTGGATTCTGACATAACTGTGCATAACTTTGTTCCTGATGACCCAGACTCAGTTGTAATCCAAGATGTTGT 3 1.0 0.9906257528050992 0.6612674361012719 Y Y 3.4268022922038504 3.4618274629965096 3.4268022922038504 0 0.0 0.0 Y 0.0 N Y 3001 226 ENSG00000129824 ENSG00000067646 + - Y Y 2734997 2850547 coding coding RPS4Y1 ZFY 2709527 2803112 + + 0.0 2722812 2829115 + - N - - N SA470 6 0.0 2.5 1 5 1 Y Y 0.0 0.0 6 0.8745328167499771 0.9198789628036792 0.9198789628036792 0.8745328167499771 4 - - 0.9149687546428692 HCT116-unstranded 10.0 693415 AGTTTTGTGCAAAGATTCCGAGAGGCTGAGTCCTTCACACAACTTTCTGAAGAAATCCAGATGGCAGTTGTATGGTGCAGGAGCAAAAAACTCAAGGCTCAGGCCATTTTTCTGGGTAACAAACTTCTTAAAAGCAACCGGCTTAAACATCTGGAAGCTCAAGGTACTAG|GGCTTCATACAGGAAATCTATTGCTGTGTCAAGTTCCAGAGAAAAGCTTCTGTTCGTCCAAGTTACTAACCAGGCTAAACCACATAGACGTGAAGGAAGGGGCTAGAAGGAAGGGAGTGCCCCACTGTTGATGGGGTAAGAGGATCCTGTACTGAGAAGTTGACCAGAGAGGGTCTCACCATGCGCACAGTTCCTTCTGTACCTGTGTGGAGGAAAAGTACTGAGTGAA 18 0.623012097509541 0.481617781676728 0.641324001134316 Y Y 3.64553343878587 3.75169126419961 3.64553343878587 0 0.9941323529411772 0.0 Y 0.0 N N 6546 839 ENSG00000163608 ENSG00000163606 + - 3 3 112738708 112693969 coding utr5p C3orf17 CD200R1 112721287 112640056 - - 0.0 112727018 112693956 - + N - - N SA470 1 0.0 1.0 1 0 2 N Y 0.0 0.0 21 1.10126354701849 1.502900840637 1.502900840637 1.10126354701849 4 - - 0.989111948034816 HCT116-unstranded 10.0 366547 TGTTTTTGTAATCTTCCCAGATCCAAGGTAATAAAATGCGTGGACATTGGAACCATGCTGCAACTATGTTGAACTCTTCTTGGAGCATGTCAGGTGTTCCAAGAACACACGTTATTCATCCAAGCTTTGAATAAATTCGTGGTTTTGTGGTATAGTAGACAGTCCTGGCT|AGATTTCCATGAAGGGGACTTCTCTCCCCCTCTTTGGCCTCCAACTCAGAATCTGCAGGCCCTGCCCCTTGGGAGGGCCGCCTTAAGGCCAGCTAACTTCCATCCAGGTTCTGTCATAAACTCAGGAAAGAAGCTTCTTCCCTTCAGTCCCTGAGAGTGTGCTGGGATTAGGGGTGCCATTCTA 9 1.0 0.7708138480569259 0.22712434785861105 N Y 3.6161681303826296 3.18768198605288 3.18768198605288 0 0.994134217067109 0.0 Y 0.0 N N 2567 2567 ENSG00000143303 ENSG00000143303 + - 1 1 156706752 156706752 intron downstream RRNAD1 RRNAD1 156698234 156698234 + + 0.0 156699497 156706887 + - N 1.35504567173582 - N SA470 1 0.0641025641025641 1.0 1 0 1 N N 0.0641025641025641 0.0 6 1.01057125491108 1.12717563047775 1.12717563047775 1.01057125491108 4 37 - 0.988958290693176 HCT116-unstranded 10.0 733786 GAGAGTGCCATTGAAGATGCGAGGAGGCAGGTGGAACAAACCAAGGAGCACGCACTCTCCAAGGAGCGAGCAGCCCAGAACAAAATCCTGGACCTTGAGACCCAGCTGAGCAGAACCAAAACGGAATTGAGCCAGCTGCGGCGGAGCCGTGATGAT|GATGTTTTAGAAGAATGTATGTCTCTTCCCAAGCTATCTTCTTATTCTGGATGGGTGGTAGAGCACGTCCTACCCCATATGCAGGAGAACCAACCTCTGTCTGAGACTTCGCCATCCTCTACGTCAGCTTCAGCCCTAGATCAACCCTCATTTGTTCCCAAATCTCCTGACGCAAGCTCTGCCTTTTCCCCAGCCTCCCCTGCAAC 8 0.9405795125692 0.30048495382532203 0.275613799693065 Y Y 3.55401162459584 3.46232197653647 3.46232197653647 0 0.0 0.0 Y 0.00275482093663904 N Y 7670 3837 ENSG00000136811 ENSG00000119392 + - 9 9 131263239 131304567 coding coding ODF2 GLE1 131217466 131266979 + + 0.0 131261405 131271155 + - N - - N SA470 1 0.17391304347826098 1.0 1 0 1 Y Y 0.17391304347826098 0.0 5 0.7190603159944251 1.00409323404627 1.00409323404627 0.7190603159944251 4 - - 0.9849369497667548 HCT116-unstranded 10.0 656308 GGAAACTGCTCCGCGCGCGCCGCGGGAGGAGGAACCGCCCGGTCCTTTAGGGTCCGGGCCCGGCCGGGCCATGGATTCAATGCCTGAGCCCGCGTCCCGCTGTCTTCTGCTTCTTCCCTTGCTGCTGCTGCTGCTGCTGCTGCTGCCGGCCCCGGAGCTGGGCCCGAGCCAGGCCGGAGCTGAGGAGAACGACTGGGTTCGCCTGCCCAGCAAATGCGA|AGTCATCGAAGAAGCCAACTGGATGACTCTGGACAAAGATGTGCCCCAGTCAGCAGAGGGTGGCTTTGATGCTGTCATCTGCCTTGGAAACAGTTTCGCTCACTTGCCAGACTGCAAAGGTAAGAGAGGGTGTGGCCTT 9 0.803711292227804 0.62731074420851 0.8434276310781279 N Y 3.54872248456702 3.55913293075533 3.54872248456702 0 0.9928257950742472 0.0 Y 0.8421674916334342 N Y 6697 70 ENSG00000137161 ENSG00000124713 + - 6 6 42907025 42931618 coding intron CNPY3 GNMT 42896938 42928496 + + 0.0 42897459 42930500 + - N - 0.316714995051922 N SA470 1 0.14594594594594598 1.0 1 0 1 Y N 0.14594594594594598 0.0 5 1.17252177653145 0.8680547958851621 1.17252177653145 0.8680547958851621 4 - 2.8 0.9815097884157208 HCT116-unstranded 10.0 374952 CTTCCGCCTGGAGAATGAACATCTGAATAACTGTGGTGAATTCCGTGCTGTGCGGGACATCTCTGTGGCCCCCCTGAACGCAGATGATCAGACTCTCCTAGAACAGATGATGGACCAGGATGATGGGGTACGAAACCGCCAGAAGAATCGGTCATGGAAGTACAACCAGAGCATATCCCTGCGCCGGCCTCGCCTCGCTTCTCA|AGGGCCCAAGACAGGGAGTGGAACAGCCAGCCCCGTGGAGGGGACCTCAGCTGTGGAGTGGAGTGGTCCTGAGCCACAGCTGGATAACGGACACCCCCCAAGACCCTGGCCTTGCCCTCAGGAAAACAGAACATCCAGCCTGATGGCCCCCCAGCC 2 1.0 0.975433098222357 0.694951188464579 N Y 3.42953077915294 3.0918642488105603 3.0918642488105603 0 0.993607500532708 0.0 Y 0.0 N Y 3253 1646 ENSG00000143324 ENSG00000135835 + - 1 1 180859387 180920750 coding coding XPR1 KIAA1614 180601140 180882290 + + 0.0 180849433 180885290 + - N - 0.101497408051436 N SA470 1 0.0 1.0 1 0 1 Y N 0.0 0.0 5 0.926356983668494 1.01057125491108 1.01057125491108 0.926356983668494 4 - 0 0.987065558127842 HCT116-unstranded CGHSA0367 10.0 382483 CAATAGCCACACTGGTTGGGTCTTCCCCAGTAGCCACTGCACCTTCCTGAATCTGCACTGTCCCCTCTTCCGTTTCAGCTGTTTTCTGCTGCCCCTTCATCTCTCTGTGAGGGGGCACATCCGAGGAACTGGTCCTTTTTTGGAGGTCTTTGTATCTCCTGATTCACAGGCCTGAGTGCTAAGTCCT|GAGGCCCAACTCCCAGGAGCTCCTCCAGGTAGCCCATCCCAGGGTCGTCCTCCCCAGGGGAGAAGGCTGCTCCTGCTGCTTCTGCCTGGGCCACCTCCCCATCCTCTGCCCCCACCCACTCAGGTTCTGAGCTGCTTGAGTCCTCTAGGAAGGAGAAGGAGTCCTGCACCTCCTGGGACAGCGAGTC 8 1.0 0.761231165984443 0.8045894166740799 Y Y 3.6684832514345698 3.22064101730576 3.22064101730576 0 0.0 0.0 Y 0.0 N Y 2717 2496 ENSG00000158773 ENSG00000186517 - + 1 1 161015767 161039760 utr5p coding USF1 ARHGAP30 161009041 161016736 - - 0.0 161013150 161019214 + - N - 2.02478927666333 N SA470 1 0.0 1.0 1 0 2 N Y 0.0 0.0 6 1.12717563047775 0.952269067127752 1.12717563047775 0.952269067127752 4 - 12.6666666666667 0.9932609216694972 HCT116-unstranded 10.0 382482 AAGGTGGCAGCTGACTGGATGCTGGCAATAGCCACACTGGTTGGGTCTTCCCCAGTAGCCACTGCACCTTCCTGAATCTGCACTGTCCCCTCTTCCGTTTCAGCTGTTTTCTGCTGCCCCTTCATCTCTCTGTGAGGGGGCACATCCGAGGAACTGGTCCTTTTTTGGAGGTCTTTGTATCTCCTGATTCACAGGCCTGAGTGCTAAGTCC|TGGGGGGCCAGGGCCAAGGCCAGGGCCAGGGCCAGGGCCAGAGGCAGGGCTTGGCCGGTGCTGTAGAGCAGGGCACTCAAGGCCACGGGTGAGCCTGGCCAAGGAAACGTTAGAGATGATGTTCGGGGGCACACTGAGGATAGAGGTGATGTGTAGCGGGAGGTTGACATTGTAGGGGTCTGAGATGTGGACACCAGCACAGCGTTCT 4 0.753178327687006 0.969419844065634 0.260500069295566 Y Y 3.6759318169590096 2.3661360957701696 2.3661360957701696 1 0.0 0.0 Y 0.0 N Y 2717 2496 ENSG00000158773 ENSG00000186517 - + 1 1 161015767 161039760 utr5p coding USF1 ARHGAP30 161009041 161016736 - - 0.0 161013150 161021104 + - N - 2.11763893081734 N SA470 2 0.17647058823529396 1.11111111111111 1 1 2 N Y 0.0 0.17647058823529396 9 1.33447229815182 1.21138990172034 1.33447229815182 1.21138990172034 4 - 20.3333333333333 0.967727904767213 HCT116-unstranded 10.0 951204 GAAGGACTTCTTTGCAGGGCCAGTGGTTTCTGTCAGATTTTCGCCGGTCACGACTGCTGAATATGAGACGATCTGCAGCACCAAGTCAGTTGCAGGGGAATTCCTTCAAAAAACCAAAATTTATACCTCCAGGAAGAAGTAATCCAGGTCTGAATGAAGAGATTACAAAACTGAATCCAGATATAAAATTATTTGAGG|ACTCAACGATGACTCTGAATAATGTCACCATGCGCCAGGGCACTGTGGGCATGCAGCCACAGCAGCAGCGCTGGAGCATCCCAGCTGATGGCAGGCATCTGATGGTCCAGAAAGAGCCCCACCAGTACAGCCACCGCAACCGCCATTCTGCTACCCCTGAGGACCACTGCCGCCGAAGCTGGTCCTCTGACTCCA 4 0.975237508457932 0.478208782666629 0.31513268864404903 N Y 3.2829653569618795 3.68783934123363 3.2829653569618795 1 0.0 0.0 Y 0.0 N Y 922 1409 ENSG00000197275 ENSG00000164949 + - 8 8 95487337 95274578 coding utr5p RAD54B GEM 95384188 95261481 - - 0.0 95479633 95272740 - + N - - N SA470 1 0.0 1.0 1 0 2 Y N 0.0 0.0 5 0.997615213181455 1.00409323404627 1.00409323404627 0.997615213181455 4 - - 0.984655113154098 HCT116-unstranded 10.0 795787 GCCGAGCGGCCGCCGCTGCCGCTGTCGCCGCCGCCGCCGCCACCGCGCCAGGTTCCGGCCGCGGCCACCCTCCGCCGTCCAGGGCCCCTCCGTCTCGGCCCCGGGACCCCGGCTCCCCGCCAGCCCCGGCCCCGGCCCCGGCACCATGTCGGAGAAAAGCGTGGAGGCAGCGGCCGAGTTGAGCGCCA|AGGTCTGGAGCCCCCAACTCCCTTGACAGTGTACGCTGGAGCAGGTTCCAGGGTGGGGCTGCCCTGCCGCCTGCCTGCTGGTGTGGGGACCCGGTCTTTCCTCACTGCCAAGTGGACTCCTCCTGGGGGAGGCCCTGACCTCCTGGTGACTGGAGACAATGGCGACTTTACCCTTCGACTAGAGGATGTGAGCC 2 0.92904856414074 0.241937739030934 0.399374272112046 Y Y 3.29760136818559 3.5832090991297503 3.29760136818559 0 0.0 0.0 Y 0.0 N Y 39560 93 ENSG00000159335 ENSG00000089692 + - 12 12 6880116 6887621 coding intron PTMS LAG3 6874682 6881678 + + 0.0 6875916 6884439 + - N 0.267591347226233 0.579294553780734 N SA470 1 0.25268817204301103 1.0 1 0 1 N Y 0.25268817204301103 0.0 5 0.816230628966645 0.952269067127752 0.952269067127752 0.816230628966645 4 1448.2 2.4 0.970398506807302 HCT116-unstranded 10.0 690923 AGCAACGGCAGCCTTTAACAGTTGAGCACATGTATGAAGACATCAGTCAGGATCATGTGAAGAAAACAGTGACCATTGAAAATCACCCTCATCTGCCACCACCTCCCATGTGTTCAGTTCACCCATGCAGGCATGCTGAGGTGATGAAGAAAATCATTGAGACTGTTGCAGAAGGAGGGGGAGAACTTGGAGTTCATATGTATCCTTCCCT|TTATTTCACAGATGCCACTGGGGTAGGTAAACTGACCCAACTCTGCAGCACTCAGAAGACGAAGCAAAGCCTTCTACTTGAGCAGTTTTTCCATCACTGATATGTGCAGGAAATGAAGACATTGCCTGCCATGCTTGGAACTGGGAAATTATTTTGGGTCTTCTTCTTAATCCCATATCTGGACATCTGGAACATCCATGGTAAG 11 0.9847039782795608 0.318101303130079 0.547604004916426 N Y 3.51935717616377 3.5570362859920097 3.51935717616377 0 0.0 0.0 Y 0.00239808153477217 N N 3317 154 ENSG00000144848 ENSG00000186265 + - 3 3 112280893 112218408 coding utr5p ATG3 BTLA 112251356 112182815 - - 0.0 112253104 112218317 - + N - 4.52003232019611 N SA470 1 0.0 1.0 1 0 1 Y N 0.0 0.0 6 0.9781811505870108 1.04943938009997 1.04943938009997 0.9781811505870108 4 - 0.166666666666667 0.9862428749654192 HCT116-unstranded 10.0 653010 AGAGACGTTCAGGTGGTGTCATGGGGAGAACCTGCTGTGCGGAGCCCCTGGGCCCGGACGCTCAGGTCCCTTTATAGAGGAAGCGGCAGTGGCAGCGTGGCAGGCAGCGGGCGGGTTCTAGGTCGGGGCTGGGGCCCGGGGAAGCCCCCAGGGCTTAGAAGATACTGCTGTTTCAGTCAAAGGCAGGAAAGGCTGAGGC|CTGTTCTCCCTCTTTTTCATCGTCACCTGGACCACTGCCCACAGGATGCAGTCCAATCTCTGACCTTGACTTTCTGTGGTCCTTTCTTCATCACATGTTCCCTCACACCTGTGCTTCTTCTCCCTCAGGACGCTCCTTTCCCAGAACATACTGCATTTTCTGACTTGTCAGGCTCGCTCAAGACGTGTTATTCGCCTATGG 10 0.934728528968643 0.9626495286915532 0.302361970395332 Y Y 3.42936294528359 3.2038455805864303 3.2038455805864303 0 0.994987405857216 0.0 Y 0.0 N N 276 458 ENSG00000226979 ENSG00000204498 - + 6 6 31542101 31526606 utr5p downstream LTA NFKBIL1 31539831 31514647 + + 0.0 31539912 31529046 - + N - - N SA470 1 0.7944444444444441 1.0 1 0 3 N Y 0.0 0.7944444444444441 13 1.14013167220738 1.16604375566664 1.16604375566664 1.14013167220738 4 - - 0.9901656856054672 HCT116-unstranded 10.0 222705 CTGTGGTGCTGAGCTACGGGGCAGAGGACCATCGGGCCCTGGAAATTCCTGGTGAGGAGCTGCCAGGTGTGTGCTCCGCCCGGGCCTTCGTGGGCTGGTACAACGGGCTTCCTGAGAACCAGG|AGGTGGGGCGCTGGGAGCATGGCGTCCTATACATGAAGTACCCCGTGTGGCCTCGCTACAGTGCCTCTCTGCAGCCTGTGGTGGACAGTCGGCACCTGACGGTGGCCACGCTGGAAGAGCGGCCCTTTGTCATCGTGGAGAGCCCTGACCCTGGCACAGGAGGCTGTGTCCCCAACACCGTGCCCTGCCGCAGGCAGAGCAACCACACCTT 4 1.0 0.377944239925794 0.670480102536301 Y Y 3.7061623612628 3.61360747730288 3.61360747730288 0 0.0 0.0 Y 0.0 N Y 10427 796 ENSG00000161513 ENSG00000161509 + - 17 17 72869156 72857627 coding intron FDXR GRIN2C 72858619 72838162 - - 0.0 72862253 72846906 - + N - 4.21399961011776 N SA470 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 6 0.699626253399981 0.8097526081018299 0.8097526081018299 0.699626253399981 4 - 4.83333333333333 0.994848257334812 HCT116-unstranded 10.0 222704 GTCCCCCGCCCGAGGAAGCGGCTGACGGAACTGCTGCTTCGAACGGCCACAGAGAAGCCAGGGCCGGCGGAAGCTGCCCGCCAGGCATCGGCCTCCCGTGCCTGGGGCCTCCGCTTTTTCCGAAGCCCCCAGCAGGTGCTGCCCTCACCAGATGGGCGGCGGGCAGCAGGTGTCCGCCTAGCAGTCACTAGACTGGAGG|AGCCGGGCTCCGCCTTCCTGCAGCTGGGCGTGTCCCTGGAGCAGCAGCTGCAGGTGCTGTTCAAGGTGCTGGAAGAGTACGACTGGAGCGCCTTCGCCGTCATCACCAGCCTGCACCCGGGCCACGCGCTCTTCCTGGAGGGCGTGCGCG 9 0.861679930039886 0.2105275110773981 0.172694282953882 Y Y 3.5339931873874804 3.2123272158807703 3.2123272158807703 2 0.0 0.0 Y 0.0 N Y 10427 796 ENSG00000161513 ENSG00000161509 + - 17 17 72869156 72857627 coding coding FDXR GRIN2C 72858619 72838162 - - 0.0 72860270 72848750 - + N - 12.0876603565467 N SA470 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 7 1.10126354701849 0.8810108376147909 1.10126354701849 0.8810108376147909 4 - 1.14285714285714 0.935505713570152 HCT116-unstranded 10.0 222350 AGAGAAGCCAGGGCCGGCGGAAGCTGCCCGCCAGGCATCGGCCTCCCGTGCCTGGGGCCTCCGCTTTTTCCGAAGCCCCCAGCAGGTGCTGCCCTCACCAGATGGGCGGCGGGCAGCAGGTGTCCGCCTAGCAGTCACTAGACTGGA|GGTGGGGCGCTGGGAGCATGGCGTCCTATACATGAAGTACCCCGTGTGGCCTCGCTACAGTGCCTCTCTGCAGCCTGTGGTGGACAGTCGGCACCTGACGGTGGCCACGCTGGAAGAGCGGCCCTTTGTCATCGTGGAGAGCCCTGACCCTGGCACAGGAGGCTGTGTCCCCAACACCGTGCCCTGCCGCAGGCAGAGCAACCACACCTTCAGCAGCGGGGACGTGGCCCCCTACACCAAGCTCTG 3 0.6359964179511639 0.613472033482227 0.5871409592840799 Y Y 3.54144175291192 3.63296356710195 3.54144175291192 0 0.0 0.0 Y 0.0 N Y 10427 796 ENSG00000161513 ENSG00000161509 + - 17 17 72869156 72857627 coding coding FDXR GRIN2C 72858619 72838162 - - 0.0 72860270 72846906 - + N - - N SA470 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 5 0.932835004533309 0.99113719231664 0.99113719231664 0.932835004533309 4 - - 0.9757902050538207 HCT116-unstranded 10.0 941525 CTGAGGCCCGGCTCGTGTCCCTGCAGGGCATGGCGGGTCAGTTCCGCAGCTACGTGTGGGACCCGCTGCTGATCCTGTCGCAGATCGTCCTCATGCAGACCGTGTATTACGGCTCGCTGGGCCTGTGGCTGGCGCTGGTGGACGGGCTAGTGCGAAGCAGCCCCTCGCTGGACCAGATGTTCGACGCCG|AGGACAACGAGACATTAGAGGTGCACCCACCCCCGACCACTACATATCAGGACGTCATCCTAGGCACTCGGAAGACCTATGCCATCTATGACTTGCTTGACACCGCCATGATCAACAACTCTCGAAACCTCAACATCCAGCTCAAGTG 4 0.7535691381997579 0.863041333862004 0.9136905911173828 Y Y 3.64400585547602 3.26676190963498 3.26676190963498 0 0.0 0.0 Y 0.0 N Y 2781 25539 ENSG00000204070 ENSG00000124155 + - 20 20 44005438 44054884 coding coding SYS1 PIGT 43990577 44044707 + + 0.0 43992333 44049168 + - N - - N SA470 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 5 0.8874888584796059 1.17252177653145 1.17252177653145 0.8874888584796059 4 - - 0.982700319236222 HCT116-unstranded 10.0 5600 GAGACCGGACTTGCCTCCGTGGGCGCCGGACCTTGGCTTGGGCGCAGGAATCCGAGGCAGCCTTTCTCCTTCGTGGGCCCAGCGGAGAGTCCGGACCGAGATACCATGCCAGGACTCTCCGGGGTCCTGTGAGCTGCCGTCGG|ATTCTCCTCGGACCCTCCTGAATAATCACACCGTGGACCCTCAGTCAGGACCTTCAAGGCCGCCTTGCTCTGAGGAAGTGGGCTCCCGTCCCAGGATATGTCCAAGGGGAGTCTCTAAAGGCTCGTCCACATCGGGGTCGTCTTCGTGCTCCATCAGCCTGGCAGGGAAAGTGGGCGGGGAGGTTAGCTTTGAGGCTG 9 1.0 0.509718440873212 0.352121280391002 Y Y 3.51207644450867 3.50848272165904 3.50848272165904 9 0.993027440395862 0.0 Y 0.0 N N 4169 6042 ENSG00000162194 ENSG00000162191 - + 11 11 62439727 62446567 utr5p intron C11orf48 UBXN1 62430287 62443970 - - 0.0 62439727 62445916 + - N 172.13601532567 0.634819344068134 N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 10 0.900444900209235 1.04296135923516 1.04296135923516 0.900444900209235 4 0 206.9 0.959536814461574 HCT116-unstranded 10.0 656246 GCCATGTGTATACCTTTGCCACCCGAAAACTGCAGCCCATGATCACCAGTGAGACCGGCAAGGCACTGATTCAGACCTGCCTCAACTCGCCAGACTCTCCACCCCGTTCAGACCCCACAACAGACCAGAGAATGAGTGCCACTGGCTTTGAAGAGACAGATCTCACCTACCAGGTGTCGGAGTCTGACAGCAGTGGGGAGACCAAGG|AGGTCAGGATGGTGGGGGAACGGCATGCTGGGGACCTCATGGTGCCCTTAGGGCCTCGGCTGCAGGCATATCCTGAAGAACTCATTCGACAGAGGCCTGGGCATGACGGGCATCCTGAATACCTGATCCGATGGAGTGTCCTGAAGTGTGGGGAAGTGG 6 1.0 0.6206934421561651 0.734275385503235 Y Y 3.49272035470961 3.38486711211668 3.38486711211668 0 0.0 0.0 Y 0.0 N Y 9020 3938 ENSG00000112658 ENSG00000112659 + - 6 6 43149243 43192325 intron utr5p SRF CUL9 43139037 43149913 + + 0.0 43141851 43152040 + - N 1.39406983315623 0.449992753543449 N SA470 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 6 1.03648333837034 0.965225108857382 1.03648333837034 0.965225108857382 4 190.166666666667 7.33333333333333 0.990328944408777 HCT116-unstranded 10.0 567515 ACCAGGTCCTGGAGTTGTTAATTCACCGAGATGGGGAATTTCAAGAACTAATGAAATTGGCACTTAATCAGGGAAAAATTCATCATGAAATGCAAGTTTTAGAAAAAGAAGTAGAGAAGAGAGACAGTGATATTCAGCAGCTACAAAAACAGCTAAAGGAAGCAGAACAAATACTG|TCTTGCTGGAGGTTTGTTAAATTTATTTATCTTTTCAAAAACCAGATCCTTGGCTGGGTGTGGTTGCCCACACCTGTCATCCCAGCACTTTGGGAGACTGAGGCAGGAGGATCGCTTGAACCCACGAGTTGGAGACCAGCCTGGGCAACATAGAGAGATTCTGTCCCTAAAAAAATAAAATAAAAAAATCAACCAAGCCTGGTGACACACATCTG 24 0.7623588496909369 0.9550091996773952 0.628018589750575 Y Y 3.0448781205808 3.1342939424377 3.0448781205808 0 0.0 0.0 Y 0.0 N N 659 4068 ENSG00000136146 ENSG00000136143 + - 13 13 48669267 48612125 coding intron MED4 SUCLA2 48627459 48510622 - - 0.0 48660418 48576736 - + N - 3.12501664982852 N SA470 62 0.7627906976744191 3.60377358490566 1 11 3 N Y 0.0 0.7627906976744191 53 1.15308771393701 1.39277448593515 1.39277448593515 1.15308771393701 4 - 0.0377358490566038 0.936320134474509 HCT116-unstranded 10.0 221542 GAGTTGGAGAAGTGTGGTTGGTATTGGGGGCCAATGAATTGGGAAGATGCAGAGATGAAGCTGAAAGGGAAACCAGATGGTTCTTTCCTGGTACGAGACAGTTCTGATCCTCGTTACATCCTGAGCCTCAGTTTCCGATCACAGGGTATCACCCACCACACTAGAATGGAGCACTACAGA|GCTGCCACTGGGCCCAAGAGATGGGTGCTCTCCTAGGCGCCCCTTCCCCTGGCAGGGGCCGAGGACGCTGCTGCTGTACAAAAGTCCCCAGGACGGCTTTGGCTTCACTCTGCGCCACTTCATCGTGTACCCACCCGAGTCGGCCGTG 4 0.926302288777062 0.9236498276215188 0.957723063018272 N Y 3.3524907226864 3.45872825368684 3.3524907226864 0 0.0 0.0030395136778115198 Y 0.0030395136778115198 N Y 569 2450 ENSG00000174111 ENSG00000225485 + - 17 17 36556019 36668628 coding coding SOCS7 ARHGAP23 36508111 36584662 + + 0.0 36523933 36614346 + - N - - N SA470 1 0.0 1.0 1 0 1 N N 0.0 0.0 6 0.570065836103689 0.958747087992567 0.958747087992567 0.570065836103689 4 - - 0.9921004685957132 HCT116-unstranded 10.0 951119 AAAAGCATTCTGCAGGATATTCTCTCCAAGGCACTTGAAAACAATATCTTGACCTGCATACTTTTCTTTGACAGATTCATCCATAGACCAGAAACAATGATCATAAGCAAACACCTTCGGCTGGCCCCGGGCATCTCCTTTGGAAAGATTCGTATTTACAGGATTAAGAATAACCTTGTTTGCATCCACATCCACCACACATTTGGTATGCAAGTCAGTCTCT|TTGAGCAGGCAGATGTCGGTGCGCTCGGCGTTGCGGCGCAGCGCCTGCACCACCAGCGACACGGTGCTGTCCTCGCGGAGGCTCTCGGCGCGCGGGCTGCGCTCGTCGTAGACGATGACCGCCGAGTAGAGGCCGGAGCGCAAGCGGGCGCGTACCTCCTCCTCGGCGGGCAGGATCTGCT 15 0.368606567442444 0.497691864181074 0.474618847374143 N Y 3.42886843174363 3.3424679237130897 3.3424679237130897 0 0.0 0.0 Y 0.0024691358024691 N Y 1274 190814 ENSG00000197892 ENSG00000120875 - + 8 8 29120641 29208185 coding coding KIF13B DUSP4 28924796 29190581 - - 0.0 29102956 29207363 + - N - 0.426292594774336 N SA470 1 0.0 1.0 1 0 1 N N 0.0 0.0 6 0.8356646915610891 1.20491188085552 1.20491188085552 0.8356646915610891 4 - 3371.5 0.9474781758232628 HCT116-unstranded 10.0 656540 ATAGAATACATGGGTGAACTGACCCAGTTCACTGAATCCCAGCTCCAGAGTCATTTTGGGGAGAAGAATGGGTCTTGGCTATATGCCATGTGCCGAGGGATTGAACATGATCCAGTTAAACCCAGGCAACTACCCAAAACCATTGGCTGTAGTAAGAACTTCCCAGGAAAAACAGCTCTTGCTACTCGGGAACAG|ATTTGGAGTGGTATGAGAAGTCCGAAGAAACTCACGCCTCCCAGATAGAACTACTTGAGACAAGCTCTACGCAGGAACCTCTCAACGCTTCGGAGGCCTTTTGCCCAAGAGACTGCATGGTACCAGTGGTGTTTCCTGGGCCTGTGAGCCAG 9 0.7119193206929431 0.9877651372863708 0.426858201452376 Y Y 3.39384326095097 3.716171579866991 3.39384326095097 0 0.993439957652753 0.0 Y 0.0 N Y 991 5223 ENSG00000170734 ENSG00000124688 + - 6 6 43586701 43608689 coding coding POLH MAD2L1BP 43543887 43597277 + + 0.0 43572475 43604118 + - N - - N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 7 1.13365365134256 0.8615767750203471 1.13365365134256 0.8615767750203471 4 - - 0.971027367734797 HCT116-unstranded 10.0 860666 AGAATAGAGGATCCTTACTTCAGTGCATCTTGATGTTCTGAGTGAAGGAACAGCACAGACCCTCTGGGAGACCATCCCTGTGTGTTAGTGAGGTCTTGCATTGTAAAGATCTTGAAGAAAGGAGACTGTGTCTGTGAGTCCTCAACAAAGCAGACACCTGATTGGAGTTAGGAGTCCAAAGGGTTTATCCGAAGTGGCA|CCTATCAATCATCGTGCTCCGCTGTCCAGTTGGCTGGCCAAGGGGGCGGGGCCGTCGTGTGACGTTTGCAGCCCGCCGGCCAGGAAGCCGCGAGATGCGTGACGAGCGAAGCGCGTGACGGAGGAGCGGTTGGCCAACGCAGTGGCGGCAGTCGGTGTAA 5 0.7372105468834351 0.7885611698598209 0.926642424315978 N Y 3.48487056160104 3.61567361684267 3.48487056160104 2 0.0 0.0 Y 0.00901041666666669 N Y 1842 56 ENSG00000215256 ENSG00000129535 - + 14 14 24458048 24584223 intron intron DHRS4-AS1 NRL 24407940 24549316 - - 0.0 24410367 24583931 + - N - 0.711320433256356 N SA470 1 0.106870229007634 1.0 1 0 1 N N 0.106870229007634 0.0 5 0.8486207332907181 0.7449723994536841 0.8486207332907181 0.7449723994536841 4 - 0.8 0.977837060564704 HCT116-unstranded 10.0 613664 GGGCGGCGTACAACCTGGTGCGCGACGACGGCTCGGCCGTCATCTGATGACGTCCGGTTGTTTGCCTTCGTGCGCTTCACCACCGGGGATGCCATGAGCAAGAGGTCCAAGTTTGCCCTCATCACGTGGATCGGTGAGAACGTCAGCGGGCTGCAGCGCGCCAAAACCGGGACGGACAAGACCCTGGTGAAGGAGGTCGTACAGAA|CCACGTCGGGGAAGCTCTTCCCCCAGAGATGGTCACCAGGCTGTATGATGGCATGCGGAGGGTCGACCTGACAGGGAAGGCGAAGGGACCCAGTGAGAACGTGTCCCAGGAGCAGTTCACAGCATCCATGTCCCACCTGTTGAAAGGA 3 0.881366600189202 0.69827081861471 0.239001901806682 Y Y 3.38912318237562 3.52614339427891 3.38912318237562 0 0.0 0.0 Y 0.0 N Y 60006 1024 ENSG00000103187 ENSG00000140950 + - 16 16 84651683 84587639 coding coding COTL1 KIAA1609 84599200 84511681 - - 0.0 84623711 84529519 - + N - 2.72875804718921 N SA470 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 5 1.25673604777404 0.8421427124259041 1.25673604777404 0.8421427124259041 4 - 20 0.9769662565015128 HCT116-unstranded 10.0 615428 GACAGTGTCAAACAATCCATGGACGAGACCGGACGTGCATCCCTCCCCGGCTTCCCCCGGAGTGGGTCACCACACTGTTTTTTATCATCATGGGAATCATTTCATTGACTGTCACATGTGGTTTGCTGGTGGCTTCCCACTGGCGAAGAGAAGCTACAAAATATGCTCGATGGATAGCATTCACTGGAA|AGGCTGCAGGGGAGTGAGACCCAGTCTTCAGATTGGGAGGACTCTGAAGACTGGCTTTCGGCTCACAGTTTAAAATGTCAGAAACTCACCTTGGCTGACCTGATAAGCCAGGGCACAGAAGTGCTGGAGGAGGGCACCAATGTCGTGCA 11 0.7288193806219829 0.920815858052513 0.394800696166765 Y Y 3.6272104187567 3.2793317813189 3.2793317813189 0 0.993308388271862 0.0 Y 0.0 N Y 829 187 ENSG00000185716 ENSG00000175267 + - 16 16 22098855 22168287 coding coding C16orf52 VWA3A 22018959 22103859 + + 0.0 22087020 22111515 + - N - - N SA470 2 0.0 1.06666666666667 1 1 1 N Y 0.0 0.0 15 1.01057125491108 0.926356983668494 1.01057125491108 0.926356983668494 4 - - 0.971027367734797 HCT116-unstranded 10.0 294752 GAGGCCGAGCTGCTGCCGTTTCTTCCTGCACAACGCTTACGTGCCTGGGCCCTTCCCATTGGATTGAGAACGCTATCCAGTGCCCCTGTCCTCGCCAGGCTCTCCCTGGATCCAGACGGGAAGACCCAACCTCCAGGAGCACTCGCTCATCTCCCCAGACAGCACTTCAGGCTGGGAAAGGAGCCAGGCTGCCCAGAAACGTCCAT|GCCCACTGAGATGTTCCTCTGTCTGCCATGCCTCACGGCCTGACTGACCGTACCAGTGAACCCAGCGTACCCCTGGCCCTGGCAGCCGGACGGCTGATGCATGCAAAGCGGGCATCTCCTTGCCCAGCCGCCTGACCGCCCTGGC 4 1.0 0.7445434758405441 0.301020581865696 N Y 3.38127338926705 3.51952501003312 3.38127338926705 0 0.0 0.0 Y 0.0 N N 3432 52 ENSG00000197077 ENSG00000244752 + - 22 22 25593415 25627836 utr3p upstream KIAA1671 CRYBB2 25421600 25615489 + + 0.0 25588635 25615269 + - N - - N SA470 1 0.0 1.0 1 0 1 N N 0.0 0.0 5 1.1919558391258898 0.90692292107405 1.1919558391258898 0.90692292107405 4 - - 0.988958290693176 HCT116-unstranded 10.0 1102534 CATTCAATTTCTGATTGTGTTGTGTTCCCTGGTGTAAGATATCTCCCAGGAGAGGGCCACACATTCCCCAGAGGTGGACCTTCTTGGTACATACACCTGTCCAATGTGTCCTGAGTGGGGACTCCTGTTGTATAGAAAGGGTCTGCTTAGAAGGTGTCTCGTCTTTTGCTCCATACCAACAACCTAGAGAAGATATAAGTGTCAGGTTCTCCAGCATCACGTCATGATAAAGGCATCTCTGAGCCTCACTAAGGAGACTCCATTCCTCCTGGGAAAAGTTCACAGCCACATCTTCAAAGGTCACAGTGC|CCTGAGCCGAGTCCCTCAGCGCGACTGCCGCCATTGAGCTCCGTGGACTAGGCGGGGAGCGGCGGCCGACCGGGGCGGGCATTCGAACACAACAGTCCCTATCCCGGGCCTGGCGCAGCTCACCCGAGGTGGTGTCGCAGAACCTCTGGCCCACTTTCGCGACTTCTCTGTCCCGTCCCTCAGTCGCGACCTCCACTGCAGAAACTGGCGGGCTGGACAAACAGGACAGAGGCCAAAAT 19 2.06649070936433e-11 0.874277466348055 0.9684061899685892 N Y 3.39380340815762 3.40951234194457 3.39380340815762 9 0.9958235208938272 0.0268803682618073 Y 0.761940690948167 N Y 5254 2762 ENSG00000152443 ENSG00000204519 - + 19 19 58269527 58201167 coding intron ZNF776 ZNF551 58258164 58193357 + + 0.0 58262153 58193612 - + N - 1.10184546521468 N SA470 1 0.0 1.0 1 0 3 N N 0.0 0.0 5 0.99113719231664 1.12717563047775 1.12717563047775 0.99113719231664 4 - 29.6 0.96940267701328 HCT116-unstranded CGHSA0166 10.0 1102660 CCTCGTGGCGGTCATTTTGGCCTCTGTCCTGTTTGTCCAGCCCGCCAGTTTCTGCAGTGGAGGTCGCGACTGAGGGACGGGACAGAGAAGTCGCGAAAGTGGGCCAGAGGTTCTGCGACACCACCTCGGGTGAGCTGCGCCAGGCCCGGGATAGGGACTGTTGTGTTCGAATGCCCGCCCCGGTCGGCCGCCGCTCCCCGCCTAGTCCACGGAGCTCAATGGCGGCAGTCGCGCTGAGGGACTCGGCTCAGG|GCACTGTGACCTTTGAAGATGTGGCTGTGAACTTTTCCCAGGAGGAATGGAGTCTCCTTAGTGAGGCTCAGAGATGCCTTTATCATGACGTGATGCTGGAGAACCTGACACTTATATCTTCTCTAGCATTTTATTTCTTTTAGGTTGTTGGTATGGAGCAAAAGACGAGACACCTTCTAAGCAGACCCTTT 19 0.36147128224740505 0.874277466348055 0.9684061899685892 N Y 3.40951234194457 3.39380340815762 3.39380340815762 1 0.994776189802368 0.0 Y 0.592542804584689 N Y 2762 5254 ENSG00000204519 ENSG00000152443 + - 19 19 58201167 58269527 coding coding ZNF551 ZNF776 58193357 58258164 + + 0.0 58193612 58262153 + - N - - N SA470 4 0.0 1.88888888888889 1 5 3 N N 0.0 0.0 9 1.33447229815182 1.1919558391258898 1.33447229815182 1.1919558391258898 4 - - 0.9343095537338 HCT116-unstranded CGHSA0166 10.0 653525 CTTCACCACTGTCTTAGAGAATGGAGCAGGCATGGTCTCTTCTACTTCCTTCAATGGAGGCGTCTCTCCTCACAACTGGGGAGATTCTGGTCCCCCCTGCAAAAAATCTCGGAAGGAGAAGAAGCAAACAGGATCAGGGCCATTAGGAAACAGCTATGTGGAAAGGCAAAG|TGGGGTCTGTGCTCCAAATGTGGCACATTGTGGACAAGTGCACTGAACTACTCCGAGAAGGCCGGGCCTCAGCTACCACCACCATCACTACTGCTGCAGCCACCTCTGTCACTGTCCCTGGTGCTGGGGTGCCATCCGGGAGTGGGGGCACTGTGGCCCCTGCTACCATGGGCTCTGCGCGCTCCCATGCCTCCAGCCGGGCCAGT 8 0.7296171024625279 0.874805628086867 0.770028596255984 Y Y 3.4451253122330296 3.38333952880683 3.38333952880683 0 0.0 0.0 Y 0.0 N N 11595 2369 ENSG00000204209 ENSG00000236104 + - 6 6 33297046 33285719 coding coding DAXX ZBTB22 33286335 33282183 - - 0.0 33286979 33284305 - + N - 1.43856256828639 N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 8 1.04296135923516 1.18547781826108 1.18547781826108 1.04296135923516 4 - 39.125 0.977186549662736 HCT116-unstranded 10.0 672471 GCTGCTGCTATGATGGAACTGGTCAGCTGCCTGCCAGTCATGACATCGTGGGAGGGTGTAAGGGCATCCCTGCATGACCATAGGTTGCATAAAAACCAAGGCTCATGGGGGGGATGAGGATAGGCAGTGCACCAACTATTGATCATTAAGCACCTCTTAGCTTTGTTGAGAGGAGTTAATTCATAGTTTCTGGCATTTAGTAGATATTCAAATGTTATCTATTACGATAGCCACTCACACGGCGAATATTATGTAG|CTGTAGCAAAAAGGAAACAGCGTAACTCAAGAAAGAAGGATGATGGACTACATTTAAACTGTTTTTATATTCAGCCACTCCAGTTTTTTCTAGGATTTCAGGGTCAATATATATTCCTTTCCCAAAGGGTTTGGACGTCCACA 5 0.133682743766763 0.82632206712044 0.359970596426195 N Y 3.73336824417043 3.20699822305859 3.20699822305859 0 0.0 0.0 Y 0.0 N Y 294 283 ENSG00000102385 ENSG00000102384 - + X X 100519486 100418670 utr5p coding DRP2 CENPI 100474758 100353178 + + 0.0 100479593 100403150 - + N - 2.57900554174647 N SA470 1 0.257281553398058 1.0 1 0 1 N N 0.257281553398058 0.0 7 1.00409323404627 0.8810108376147909 1.00409323404627 0.8810108376147909 4 - 0.142857142857143 0.951552375695177 HCT116-unstranded 10.0 615855 GAGCTTCCTGGAGAAGCGAGGCTGCCCGCGCACGGCGCTGGAGTACTGCAAGCTCATCCTGAGTCTCGAGCCGGATGAGGACCCCCTCTGCATGCTGCTGCTCATCGACCACCTGGCCTTGCGGGCCCGGAACTACGAGTACCTGATCCGCCTCTTCCAGGAGTGGGAG|TTCTGGGAAGTCATCAGTGATGAGCATGGCATCGACCCCAGCGGCAACTACGTGGGCGACTCGGACTTGCAGCTGGAGCGGATCAGCGTCTACTACAACGAGGCCTCTTCTCACAAGTACGTGCCTCGAGCCATTCTGGTGGACCTGGAACCCGGAACCATGGACAGTGTCCGCTCAGGGGCCTTTGGACAT 10 0.6641315128247111 0.378669186945556 0.4524587878081071 Y Y 3.73656073943594 3.5691116441359703 3.5691116441359703 0 0.0 0.0 Y 0.0 N Y 20799 11501 ENSG00000141002 ENSG00000258947 + - 16 16 89977792 90005169 coding coding TCF25 TUBB3 89940000 89987800 + + 0.0 89965280 89998979 + - N - - N SA470 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 9 1.0623954218296 1.17899979739626 1.17899979739626 1.0623954218296 4 - - 0.942638960555825 HCT116-unstranded 10.0 166918 CAGAGTGAAGTCACCCTGCTGAGAAATGAAGTGGCACAGCTGAAACAGCTTCTTCTGGCTCATAAAGATTGCCCTGTAACCGCCATGCAGAAGAAATCTGGCTATCATA|ATACAGATGAATATAGACCTCCTGTTTGGAAATCTTACTTATATCAGCTACAACAGGAAGCCCCTCATCCTCGAAGAATTACCTGTACTTGCGAGGTGGAAAACAGACCAAAGTATTATGGAAGAGAGTTTCATGGCATGATCTCCAGAGAAGCAGCCGACCAGCTCTTGATTGTGGCTGAGGGGAGCTACCTCATCCGGGAGAGCCAGCGGCAGCCAGGGACCTACACTTTGGCTTTAAGATTTGGAAGTCAAACC 5 1.0 0.4025708677761421 0.873669483381039 N Y 3.63552422018169 3.53039946453785 3.53039946453785 0 0.990850686198535 0.0 Y 0.990850686198535 N Y 2565 755 ENSG00000115966 ENSG00000128656 + - 2 2 176033110 175870097 coding coding ATF2 CHN1 175936978 175664091 - - 0.0 175945388 175816930 - + N - - N SA470 1 0.0 1.0 1 0 2 Y N 0.0 0.0 5 0.492329585725913 1.20491188085552 1.20491188085552 0.492329585725913 4 - - 0.989710716771805 HCT116-unstranded CGHSA0556 10.0 167412 ACGAAGATCCTGATGAAAAAAGGAGAAAGTTTTTAGAGCGAAATAGAGCAGCAGCTTCAAGATGCCGACAAAAAAGGAAAGTCTGGGTTCAGTCTTTAGAGAAGAAAGCTGAAGACTTGAGTTCATTAAATGGTCAGCT|GCAGATACAGATGAATATAGACCTCCTGTTTGGAAATCTTACTTATATCAGCTACAACAGGAAGCCCCTCATCCTCGAAGAATTACCTGTACTTGCGAGGTGGAAAACAGACCAAAGTATTATGGAAGAGAGTTTCATGGCATGATCTCCAGAGAAGCAGCCGACCAGCTCTTGATTGTGGCTGAGGGGAGCTACCTCATCCGGGAGAGCCAGCGGCAGCCAGGGACCTACACTT 12 0.262754373103492 0.20470000702295896 0.653046150754574 N Y 3.49168728493972 3.62361669590707 3.49168728493972 10 0.992824940047962 0.00984172661870497 Y 0.964124700239808 N Y 2565 755 ENSG00000115966 ENSG00000128656 + - 2 2 176033110 175870097 coding utr5p ATF2 CHN1 175936978 175664091 - - 0.0 175957789 175816930 - + N - - N SA470 1 0.0 1.0 1 0 2 N N 0.0 0.0 8 0.8486207332907181 1.15308771393701 1.15308771393701 0.8486207332907181 4 - - 0.91500178612773 HCT116-unstranded CGHSA0556 10.0 380786 CGCCCTCCGACCCGCCCCGCGGCGCATTGTGGGATCTGTCGGCTTGTCAGGTGGTGGAGGAAAAGGCGCTCCGTCATGGGGATCCAGACG|TGTCTACCATCAGAGGGAGATCTCTGCCCCCTGGGGCTGAGAGACCCCAACCTTTCCCCAAGCTGAAGCTGCAGGGTATTGAGGTACCAGCCAGATGTCTTCCCACAAAGGATCTGTGGTGGCACAGGGGAATGGGGCTCCTGCCAGTAACAGGGAAGCTGACACGGTGGAACTGGCTGAACTGGGACCCCTGCTAGAAGAGAAGGGCAAACGGGTAATCGCCAACCCACCCAAAGCTGA 9 0.9850679470444208 0.410611593267442 0.798173671664837 Y Y 3.5455299893015098 3.31063524818594 3.31063524818594 0 0.0 0.0 Y 0.0 N Y 432 16555 ENSG00000159348 ENSG00000159346 + - 1 1 202936408 202927700 coding utr5p CYB5R1 ADIPOR1 202930997 202909951 - - 0.0 202936319 202920292 - + N - - N SA470 2 0.158536585365854 1.14285714285714 1 1 1 N Y 0.158536585365854 0.0 7 0.5311977109148011 1.2826481312333 1.2826481312333 0.5311977109148011 4 - - 0.972592391150405 HCT116-unstranded 10.0 293777 TGGACAGCCAGTGCTCATTGGTGGCACCATGGGAACCTGTAGTTATGTTCTTACTGGCACTGAACAGGGCATGACTGAGACCTTTGGAACAACCTGTCATGGAGCGGGCCGTGCATTGTCCCGAGCAAAATCTCGACGTAATTTAGATTTCCAGGATGTCTTAGACAAATTGGCAGATATGGGAATTGCGATCCGTGTTGCCTCACCCAAACTGGTTATGGAAG|AGGTACAACCACAGGGCTCCCCATGAGGTGATGTCATCGAATTTTCCTGGCTGAAGAGTCGTCCTTTGTGTACACACATGGGAGTTTATTTTTTCATCTGCATATGGACGCATTCCTGAGACTTCAGAAAC 8 0.955598515888078 0.919321723887389 0.5095089336672051 N Y 3.76745363114904 3.6193911308716697 3.6193911308716697 0 0.0 0.0 Y 0.0 N Y 6701 358 ENSG00000100220 ENSG00000205853 + - 22 22 32808242 32778039 coding utr5p C22orf28 RFPL3-AS1 32783569 32755893 - - 0.0 32788227 32777242 - + N - - N SA470 1 0.990825688073395 1.0 1 0 2 N N 0.0 0.990825688073395 6 1.1077415678833 0.7061042742647959 1.1077415678833 0.7061042742647959 4 - - 0.993381186507095 HCT116-unstranded 10.0 294686 GGGGTCAAAAGGTGATATGATGAGGGCCGTGCATTGTCCCGAGCAAAATCTCGACGTAATTTAGATTTCCAGGATGTCTTAGACAAATTGGCAGATATGGGAATTGCGATCCGTGTTGCCTCACCCAAACTGGTTATGGAAG|AGTTCCCCCAGAAGATCAATGGAAGGTGGATTCCAAAGAGTGGGCAAGTGAGGACCCCTTCTCTGTTACCAAGGTGACCCCAAGGAACACAGTAAATGTGGCGGCTTATTTGGCCTCCCCAGGACGGACTGGAGCATCAGTAGTGCCTGAGTTCATCAAAGGACAGATGCTCAAGACACCTTGATCACCATTAGGTGGAATTGAAGGAGCCAAAAATGGGCGCAG 4 0.423963486695471 0.466398233936494 0.7770122216811609 N Y 3.76745363114904 3.21488786896051 3.21488786896051 0 0.0 0.0 Y 0.0 N Y 6701 358 ENSG00000100220 ENSG00000205853 + - 22 22 32808242 32778039 coding coding C22orf28 RFPL3-AS1 32783569 32755893 - - 0.0 32788227 32764554 - + N - - N SA470 2 0.0188679245283019 1.4 1 2 2 N N 0.0188679245283019 0.0 5 0.686670211670352 1.08830750528886 1.08830750528886 0.686670211670352 4 - - 0.929978241015962 HCT116-unstranded 10.0 914128 CTCGAGGTGCCGGGTTGCAGGCGCTCAGGAGCGCTAGGGTTTGAGGCCTGCTTTCTGCTCGCGCCAGCAGAGCACTACCTGAGGCAGCGAGGCGCAGCGAGCCTAGCCTCCCCGCGCCCTGGGCAGTGTGGCCATGGAGAATCAGGTGTTGACGCCGCATGTCTACTGGGCTCAGCGACACCGCGAGCTATATCTGCGCGTGGAGCTGAGTGACGTACAG|GGTTGTGGATACCCCCTGGCTGGGCTTCATGGAGAAATCTTCTCTGATCACCAACCTGAATCCCAGAGTAGCCTCCATCTTAGGACAGAATGAGAGGCCTTCTGTAACCAGATATAACTGGCCAGCATGGGGAAATTGATCAGGATGGGGCCGCAAGAGAGGTGGTTACTCCGGACAAAGCGGCTTCATTGGAGTCGCCTCCTCTTCTT 22 0.898721018023908 0.550733937497651 0.8154912824447259 N Y 3.60632674564779 3.4425646591532897 3.4425646591532897 0 0.0 0.0 Y 0.0 N Y 11664 1342 ENSG00000074696 ENSG00000074621 + - 15 15 65870687 65953333 coding utr5p PTPLAD1 SLC24A1 65822756 65903704 + + 0.0 65823056 65916293 + - N - - N SA470 1 0.0 1.0 1 0 1 Y N 0.0 0.0 14 1.36038438161107 1.37981844420552 1.37981844420552 1.36038438161107 4 - - 0.9845865271048512 HCT116-unstranded 10.0 914129 AGAATCAGGTGTTGACGCCGCATGTCTACTGGGCTCAGCGACACCGCGAGCTATATCTGCGCGTGGAGCTGAGTGACGTACAG|GGTTGTGGATACCCCCTGGCTGGGCTTCATGGAGAAATCTTCTCTGATCACCAACCTGAATCCCAGAGTAGCCTCCATCTTAGGACAGAATGAGAGGCCTTCTGTAACCAGATATAACTGGCCAGCATGGGGAAATTGATCAGGATGGGGCCGCAAGAGAGGTGGTTACT 18 0.000249670756551318 0.3413950028966889 0.907800805540433 N Y 3.60632674564779 3.4425646591532897 3.4425646591532897 0 0.0 0.0 Y 0.0 N Y 11664 1342 ENSG00000074696 ENSG00000074621 + - 15 15 65870687 65953333 coding utr5p PTPLAD1 SLC24A1 65822756 65903704 + + 0.0 65823056 65916293 + - N - - N SA470 1 0.0 1.0 1 0 1 Y N 0.0 0.0 9 1.2373019851796 1.05591740096479 1.2373019851796 1.05591740096479 4 - - 0.919974466187568 HCT116-unstranded 10.0 967056 ATTAATCCTTGAAGGAAATGACATTGAGCTTGTTTCAAATTCAGCGGCTTTGATTCAGCAAGCCACAACAGTTAAAAACAAGGATATCAGGAAATTTTTGGATGGTATCTATGTCTCTGAAAAAGGAACTGTTCAGCAGGCTGATGAATAAGATCTAAGA|GGACATTCGGAAATTCTTTGGAGTAATACCAAGTGGAAAGAAACTTGTAAGTGAAACAGTAAAGAAGAATGAGAAAACAAAGTCTGATGAAGAAACTTTAAAAGCAAAGAAAGGAATAAAGGAAATCAAGGTAAATAGCTCCCGTAAAGAGGATGACTTCAAACAAAAGCAACCAAGCAAGAAAAAGAGGATCATCTATGATTCAGATTC 61 0.400893036189838 0.941814613563706 0.397610632962344 N Y 3.53465553479678 3.5899953172448904 3.53465553479678 2 0.0 0.00269541778975757 Y 0.00269541778975757 N Y 83822 10295 ENSG00000163682 ENSG00000035928 + - 4 4 39460568 39367995 utr3p coding RPL9 RFC1 39455744 39289076 - - 0.0 39456153 39353096 - + N - - N SA470 16 0.0 10.5769230769231 5 52 2 N N 0.0 0.0 52 1.03648333837034 1.39925250679996 1.39925250679996 1.03648333837034 4 - - 0.9286166245266492 HCT116-unstranded 10.0 968057 AAGGGCCCCAGAGGAACCCTGCGGAGGGACTTCAATCACATCAATGTAGAACTCAGCCTTCTTGGAAAGAAAAAAAAGAG|GGACATTCGGAAATTCTTTGGAGTAATACCAAGTGGAAAGAAACTTGTAAGTGAAACAGTAAAGAAGAATGAGAAAACAAAGTCTGATGAAGAAACTTTAAAAGCAAAGAAAGGAATAAAGGAAATCAAGGTAAATAGCTCCCGTAAAGAG 72 2.44754935589802e-05 0.954688926403963 0.848114382181227 N Y 3.33892763402594 3.5899953172448904 3.33892763402594 0 0.0 0.0 Y 0.0 N Y 83822 10295 ENSG00000163682 ENSG00000035928 + - 4 4 39460568 39367995 coding coding RPL9 RFC1 39455744 39289076 - - 0.0 39459814 39353096 - + N - - N SA470 9 0.0 5.75 4 8 2 Y N 0.0 0.0 8 0.932835004533309 0.99113719231664 0.99113719231664 0.932835004533309 4 - - 0.925289088370611 HCT116-unstranded 10.0 1136998 ATCCGAGTGAGGCGACGGGGTAGGGGTTGGCGCTCAGGCGGCGACCATGGCGTATCACGGCCTCACTGTGCCTCTCATTGTGATGAGCGTGTTCTGGGGCTTCGTCGGCTTCTTGGTGCCTTGGTTCATCCCTAAGGGTCCTAACCGGGGAGTTATCATTACCATGTTGGTGACCTGTTCAGTTTGCTGCTATCTCTT|ACAGCATCGCACAGAATTATTTTAAAAAAAAGCAGTGATCCAAGCAATTGAATTGGAAGCACTCTGGGGAAACCTGCTGTTTATTGTGGAAATCATCTTCGATCTTGGAATTGAAAGTAAAGCTGGAAAGGAATTTACAAACAAGAA 19 0.907067673780539 0.4414948921754209 0.36284514097879 N Y 3.52208566311286 3.2887185053071297 3.2887185053071297 0 0.0 0.0 Y 0.0 N Y 8732 1769 ENSG00000113732 ENSG00000164463 + - 5 5 172462448 172566291 coding utr5p ATP6V0E1 CREBRF 172410760 172483355 + + 0.0 172421825 172507588 + - N - - N SA470 2 0.0 1.11111111111111 1 1 4 N N 0.0 0.0 9 1.20491188085552 0.8745328167499771 1.20491188085552 0.8745328167499771 4 - - 0.983763942069384 HCT116-unstranded 10.0 733564 AGACACAATGATTGGCAAAGCAGTGGAACATATGTTTGAGACAGAGGATGGTTCTAAAGATGAGTGGAGGGGAATGGTCTTAGCACGTGCACCTGTCATGAACACATGGTTTTACATTACCTATGAGAAAGACCCTGTCTTGTACATGTACCAACTCTTAGATGATTACAAAGAAGGCGACCTTCGCATTATGCCTGATTCCA|CAGCCGGAGCCAACTAATACATGCGGCCACCTTCTCTCCATGCCTGCACTTTCTGTTCCAAGCCATCTGGTGGAAGCAATCCAATTGCCTGCAGAATCATCCGAAAGCATCACTGGGAAGAAGCTGGTGGAACTAAGAAGCAATTCTTTAGCCTGACAGCCAGTCTGTTTTTAGTATTTCTAAAC 8 0.989267671645752 0.991019001971872 0.443137420707929 N Y 3.75847748231474 3.72824693801095 3.72824693801095 0 0.0 0.0 Y 0.0 N Y 12011 89 ENSG00000106723 ENSG00000130045 + - 9 9 91093609 91199189 coding intron SPIN1 NXNL2 91003334 91150016 + + 0.0 91083520 91198914 + - N - - N SA470 1 0.112299465240642 1.0 1 0 3 N N 0.0 0.112299465240642 12 1.3215162564221898 1.21138990172034 1.3215162564221898 1.21138990172034 4 - - 0.994848257334812 HCT116-unstranded 10.0 733556 GGAACATATGTTTGAGACAGAGGATGGTTCTAAAGATGAGTGGAGGGGAATGGTCTTAGCACGTGCACCTGTCATGAACACATGGTTTTACATTACCTATGAGAAAGACCCTGTCTTGTACATGTACCAACTCTTAGATGATTACAAAGAAGGCGACCTTCGCATTATGCCTGATTCCA|CCATTGCTGTGAATTACGTGAGGGAAAGATATTGAAGAGGAGTTGGACACTCCGAGAGTGCAGCTGTTCTCCCCCCGCACCATCCGTGTCCTGCATTCTGCGAGTCTGTGCTCATTAACAATGTGCTGTGACCATGTGACTCAGCAATCCTGCTGCTGGGTATATACCCGAAAGAAAGGAAA 20 1.0 0.538823255501439 0.244321547285814 N Y 3.75847748231474 3.5110433747387795 3.5110433747387795 1 0.0 0.0027624309392264602 Y 0.0 N Y 12011 89 ENSG00000106723 ENSG00000130045 + - 9 9 91093609 91199189 coding utr3p SPIN1 NXNL2 91003334 91150016 + + 0.0 91083520 91190002 + - N - 0.112039608507467 N SA470 2 0.29050279329608897 1.05555555555556 1 1 3 N N 0.0 0.29050279329608897 18 1.12717563047775 1.14660969307219 1.14660969307219 1.12717563047775 4 - 0.0555555555555556 0.98660755015233 HCT116-unstranded 10.0 375068 AAAAGAACGATCCTCCACTTGACCAAGAAAAAAGTGATTCTCCCAGAAGCACAAAGCATACTCTTGCCCCTCAGGTGTTGCTTGTGTACATCGTACCCATCCATTCGGCTTCACCTGCAGCCAACGGCCTGGAATCGCAAAGAGACACCACTCTGGGCAGAGCAGAGCAGG|CTGGAACCCTACATGGATGAGAACTTCATCTCCAGAGCCTTTGCCACCATGGGGGAGACCGTAATGAGCGTCAAAATTATCCGAAACCGCCTCACTGGGATCCCAGCTGGCTACTGCTTTGTAGAATTTGCAGATTTGGCCACAGCTGAGAAGTGTTTGCATAAAATTAATGGGAAACCCCTTCCAGGAGCCACACCTGCGAAACGTTTTAAACTGAACTATGCCACTTACGGGAAACAACCAGATAACAGC 6 0.419419500785516 0.943639535804345 0.316754354116073 Y Y 3.2829255041685297 3.59850745776276 3.2829255041685297 0 0.988331678252234 0.0 Y 0.00235849056603776 N N 14985 1900 ENSG00000180198 ENSG00000180098 + - 1 1 28865708 28905051 utr3p coding RCC1 TRNAU1AP 28832455 28879597 + + 0.0 28865256 28880152 + - N - - N SA470 1 0.0 1.0 1 0 3 N Y 0.0 0.0 6 1.0235272966407098 0.8939668793444209 1.0235272966407098 0.8939668793444209 4 - - 0.991200847475167 HCT116-unstranded 10.0 615206 GCGGGTGCTGGTGGAGCCGGACGCGGGCGCAGGGGTCGCTGTGATGAAATTCAAGAACCCCCCAGTGAACAGCCTGAGCCTGGAGTTTCTGACGGAGCTGGTCATCAGCCTGGAGAAGCTGGAGAATGACAAGAGCTTCCGCGGTGTCATTCTGACCTCGGACCGCCCGGGTGTCTTCTCGGCCGGCCTGGACCTGACGGAGATGTGTGGGAGGAGCCCCGCCCACTACGCTGGGTACTGGAAGGCCGTTCAGGAGCTGTGGCTGCGGTTGTACCAGTCCAACCTGGTGCTGGTCTCCGCCATCAAC|GTACCGGGTGTCTGGTCCGAGCCGTGGAGATGGCCGCCCAGCGCCAGGCCGACATCATCGGGAAGCCCAGCCGCTTCATTTTCGACTGCGTGTCCCAGGAATACGGCATCAACCCCGAGCGCACCGTCATGGTGGGAGACCGCCTGGACACAGACATCCTCCTAGGCGCCACCTGTGGCCTGAAGACCAT 3 2.9291755214967196e-07 0.6468544151057449 0.8847043594544179 N Y 3.6769648867289 3.45720067037699 3.45720067037699 0 0.994747410695413 0.0 Y 0.0 N Y 8864 9734 ENSG00000167969 ENSG00000184207 + - 16 16 2302301 2264808 coding coding ECI1 PGP 2289396 2261998 - - 0.0 2294407 2264054 - + N - 0.450132415272708 N SA470 1 0.0 1.0 1 0 1 Y N 0.0 0.0 5 0.6348460447518349 0.803274587237016 0.803274587237016 0.6348460447518349 4 - 457.2 0.967577993648565 HCT116-unstranded 10.0 221186 CGACATCGCAGTCCCCAAGTTCAAACAGAGGAAGGGGGAGTCTGACGGGGCCTATATCCACCGCATGCAGCAAGAGGCCCAGCATGTGCTGTTCCTCAGCAAGAACCAGGCCATCCGGCAGCCAGAGGTGCAGGCAGCTCCCAAGGAGAAGT|CGTGGGCCGTGTCGGGGGCGGCTCCCCCAGGTCGCCTTTCCCATCCCGGGAGCTCACCTGTGCGAAGCGGTCAAGGACCCGAGCAGCTAAAGGGTGAGTCCCCGCCCCACTCCGGGTGCCCCCCGCGCCCCGGTCCCGTCCCCGCGCGGAAGGATATCCTGCAGCCGTTTCACCAGCAGCGTCTTCCCGACGCCCGTGGCCCCCAGCAGGAGACACATTCCGTGCTTCGCTCCACCCGGCACCCGTAGCTCGGCGCCGCGGCTCAAGGCCCGCCCAC 8 0.0305573839200832 0.874805628086867 0.923672068123908 N Y 3.3363135477837096 2.95382031470719 2.95382031470719 0 0.0 0.0 Y 0.0 N N 4321 23191 ENSG00000185298 ENSG00000185359 + - 17 17 79640934 79670168 coding utr5p CCDC137 HGS 79633394 79650356 + + 0.0 79637458 79650566 + - N - 0.0216588626476262 N SA470 1 0.0 1.0 1 0 1 N N 0.0 0.0 9 1.04296135923516 1.327994277287 1.327994277287 1.04296135923516 4 - 1.88888888888889 0.927541461000318 HCT116-unstranded 10.0 6693 TAGTATATGGTGCCAAAAACTTAGAAGATGCATTTTCCTTTGGACATGAAATATGAATGCTTTTCTTGTTTATTTCATTCACAGTAAATCCTTCTGAAGCTGTAACCTCTGGGATGCCATCTAGGCCAATTCCTTGACAAGTCAGGCTGCCATACAAAGATGGTTTC|CCTTTTCCAAGGTTCCGCTCATCCTTTGCTGCTGCGCGGCCTCTAGCTGTGCAAACCGAAGACCGGACCCTGCAGCCGCGTTCCCAGGGCGTCTGAAAACACTGAAGGAACGGCCTTGACCAGGTGCAGCAGCAATATCCCACCGAGA 4 0.7672091261140269 0.539645473788632 0.106842766593801 Y Y 3.71873223294673 3.3571972208926297 3.3571972208926297 1 0.0 0.00316455696202511 Y 0.00316455696202511 N Y 539 3359 ENSG00000175575 ENSG00000175581 - + 11 11 73638790 73576178 coding intron PAAF1 MRPL48 73587744 73498361 + + 0.0 73598399 73499037 - + N - 0.758777948089127 N SA470 1 0.0 1.0 1 0 2 N Y 0.0 0.0 7 0.796796566372201 0.680192190805537 0.796796566372201 0.680192190805537 4 - 105.285714285714 0.992339981631 HCT116-unstranded 10.0 222718 CTGAGGCTGGGCACAGGCAGGTGTCCCCCGACATCTCCCGCTGCAGGTAGATCACCACACGGCAGGAGGTAGGCTTGGAAGGCTCCGCCGTGGTGGAAAGGGTCACGAGTGAGTGGCCAGTGGAGGCCAGAGCCTCATAATCTCAGTG|CTCGACTGGGTAGAGCTCGCGCGGCAGCACCGCCTGCAGGTCCATGAACAGGGTGATGGGGATGTGGCTGAGGAAGTAGAGGCCCAGCAGCCACTCCACGCAGCGCCTGGTTGCCGGAGCCCCCATAGTCTGTCGGTTGGGCCTGGACCCGCTGATGTGAGAAGAGGGG 3 0.497049021808925 0.8786265209297751 0.270383753467255 Y Y 3.56016600052522 3.43780472778458 3.43780472778458 0 0.0 0.0 Y 0.0 N Y 13034 6179 ENSG00000109079 ENSG00000109084 - + 17 17 26674035 26655707 utr5p coding TNFAIP1 TMEM97 26662628 26646121 + + 0.0 26666434 26646391 - + N - 0.761574911379277 N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 5 0.7449723994536841 1.00409323404627 1.00409323404627 0.7449723994536841 4 - 174 0.959781114980106 HCT116-unstranded 10.0 567908 GGAATTACCAGCTGAGGACAGCCAAGACTTAACAAGCACTGACTACCGTTCCCTTGAGCTACCATTATCACAAGGGTTTGCCTTTCAATTAGTAAAGCTTTTTGGATCTCCAGGCGTTCCAATGGAATCCTTGTTGCCTGATGACTATGTGGTTCCCCTTGACTGGAAGACACTAAAGATGATCTACTTGCAATGGAAGATGTCAGTGGAGAA|GAAACATTCATGGTGTCTCAAGAGAAAAAATCCACCGAATGAAAGAACGGTATGAACACGATGTTACTTTTCACAGTGTGCTTCATGCAGAAAAGCCAAGCAGAATGAACAGAAACCAGGACAGGAATAATGCATTGCCTTCCAACAATGCCAGATACTGGAATTCCTACACAGAGTTTCCAAACCGGAGGGCCCACGGTGGATTTACAAATGAGAG 12 0.953864967427738 0.7972820209992478 0.8741949036559069 Y Y 3.5314325343077404 3.404223201915741 3.404223201915741 1 0.9953160572094591 0.0 Y 0.00232018561484915 N Y 808 610 ENSG00000139617 ENSG00000139597 + - 13 13 33054775 33007091 coding coding RP11-298P3.4 N4BP2L1 33006554 32974861 - - 0.0 33012789 32977337 - + N - - N SA470 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 15 1.3215162564221898 1.36038438161107 1.36038438161107 1.3215162564221898 4 - - 0.991157737720567 HCT116-unstranded 10.0 1101684 GCTGTCCCGGCACTCAAAGGGCCTGCAAATCTTGGGCCAGACGCTTCGGGCCTCCATGCGTGAGCTGGGCCTCCTCATCTTTTTCCTCTTCATCGGTGTGGTCCTCTTTTCCAGCGCCGTCTACTTTGCCGAAGTTGACCGGGTGGACTCCCATTTCACTAGCATCCCTGAGTCCTTCTGGTGGGCGGTAGTCACCATGACTACAGTTGG|TGGAGCTTAGAAGAGACGCCCCAACTCTGGAGTCACGACCCGCAGCGGCAGCCCTGTCTCTGCTCTTCCAGGCCGCCTCGAGCGCCGCACGGCGGGCCATGTCTCCGGCTCAGGAAACCTACAGCTCCTCGCCGCACCCGCTCCGCCGGCTCGACCGCTTCCGCCCGCTGGAGGCGACTTGGGGTGGCCCCCACTGGAAGCCCCTGCCGGGCATACACAGCGTCC 17 1.0 0.6589837154560171 0.774857768057195 Y Y 3.67849247003875 3.64656650855576 3.64656650855576 0 0.0 0.0 Y 0.0 N N 358 314 ENSG00000104848 ENSG00000196337 + - 19 19 49576198 49562117 coding utr5p KCNA7 CGB7 49570675 49557531 - - 0.0 49573612 49559809 - + N - - N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 26 1.17252177653145 1.53529094496107 1.53529094496107 1.17252177653145 4 - - 0.9845865271048512 HCT116-unstranded 10.0 1037067 TGTCAGTTATGATGCACTGAGAAAACTTCAGAGACCTAAACTTTTTCCAGAGAAGAGAAGCTTTACTGGTGTTCCAGCCCTAAGAAACCTTTGTTCAAGAAAACGGCAGATGCTCTGTTGAATCCACTGGAGATTGTTCTGATACTAAGGACAAGTATGCTCATATGACATTAACAGACAAGACACTTTTCAGAAAGAC|AGGCAACGTGTTGGACCTTCCGGAGCTTCTCAGAAGACAGAGGGTTTTCTTTTGAGGTAAATTTGATAGTACATTTTGATAGTACGGGAGGCGATACGGCATGGTGACAGAAAAGCGCCGGCTTGGTTAGCAGGACCACCTGGCAGGGCTGCAGGCTGTGCCACTTACCAGGCAGGGGACCTTGGGCCAGCTGCTTGGCCTC 94 0.7536737705517329 0.92823587419689 0.7000312633277389 Y Y 3.19656484893134 3.74337746277462 3.19656484893134 0 0.994987374684367 0.0 Y 0.834583364584115 N Y 613 425 ENSG00000225484 ENSG00000226381 + - 10 10 81586350 81546199 intron intron RP11-773D16.1 RP11-119F19.2 81563813 81524486 - - 0.0 81564241 81526080 - + N - 23.6490524781341 N SA470 9 0.527363184079602 4.2 3 5 2 N Y 0.0 0.527363184079602 5 0.790318545507386 0.965225108857382 0.965225108857382 0.790318545507386 4 - 0.2 0.926532649095666 HCT116-unstranded 10.0 950850 AGCAGGAGCAGAACAAGGACACCAGCGGGAGCTCCTTCATCTTCTCTTTGTAGGCAGCAAGGGTCATGTTTCTGGGATCTGGTGGCTGAATCTAGCTGAAAGTTACAGAGTGGGTCTGTCACCAGCTTGGGACGCTGTCACCA|ACCATGAGAAAAGAAACGTCGTCCTCCTTCATCTCCATCTGCAGCCGCTCGATCTCATGTGCCAGCACCTCCGTCTCCTCTGTGAGCTGCTTCATCTTCTCGTCGGCCAGAAGTTGCTTCTGCCTTGTCTCCTCGGCCATGGCATCCAGAATGGCCTGCTCCTCCACTCTCAAGAACTCGCGAAGCTTATCAAACTCCT 8 0.7345092598384849 0.398631461394378 0.5568625792920711 Y Y 3.53039946453785 3.40740634961144 3.40740634961144 14 0.0 0.0 Y 0.0 N Y 239 4923 ENSG00000015592 ENSG00000104228 - + 8 8 27115937 27168836 utr5p intron STMN4 TRIM35 27092840 27142404 - - 0.0 27101318 27151597 + - N - 0.503998377327628 N SA470 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 15 0.932835004533309 1.1919558391258898 1.1919558391258898 0.932835004533309 4 - 28.1333333333333 0.936338486233686 HCT116-unstranded 10.0 384186 GAGGAGAGATTCATGCCCCAAACACAGGCCAGCTGAGGAGGGCTTCGTCCTCCTTCCTTTGGCCCAGATGAGGGAGCGCCTTCCCAGAAGTCACATGAGGAAAAACCGTGCTCAGGTCAGAACTGGACCCAGCCTGTGCCTGGCTGGGTCTGGCTGGAAGTTGAT|CTGTCGAGGATGGGTTTCTCCTGCTCCTCCTCGGGGCTGGCGCTGCCCAGGATCCGCTTCCGGGCCTCGGCGTACTCGGCCTCTCGCTGTGCTAGGGACTTGACTGGAAGGGTGGGCCTGCTGGTGGAGTTGGGGCTGCTGACCACACCGTTGCTGGTGGGCCTCTTGAGG 5 1.0 0.928769459451736 0.5610615980426871 Y Y 3.38548960673263 3.14740237035155 3.14740237035155 1 0.0 0.0 Y 0.0 N Y 1511 39171 ENSG00000157191 ENSG00000055070 - + 1 1 16786573 16724640 coding coding NECAP2 SZRD1 16767167 16679070 + + 0.0 16785337 16719977 - + N - 0.301776629390287 N SA470 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 5 1.01057125491108 0.7061042742647959 1.01057125491108 0.7061042742647959 4 - 718 0.993294072393157 HCT116-unstranded 10.0 540843 GCCGGCTGAGCCCACCTCGCTGGGCCCTCCCTGGCGCCCCGCCTTGGGCGGCGGCGAGCGCGCGGGCCGCCATGTCGTACATGCTCCCGCACCTGCACAACGGCTGGCAGGTGGACCAGGCCATCCTCTCGGAGGAGGACCGCGTGGTCGTCATCCGCTTCGGCCACGACTGGGATCCTACGTGCATGAAGATGGACGAGGTCCTGTACAGCATCGCCGAGAAGGTT|TGGAAGGCGCTTTGAGTCCCCGCTGCTGTGGCAGAGCGCCATCATGATCCTGACCATGCTGCTGATGCTGAAGCTGTGCACCGAGGTCCGTGTGGCCAACGAGCTCAACGCCAGGCGCCGCTCCTTTACAGACTTCGACCCCCACCA 4 0.884924594912059 0.32830798031326 0.7394999307044341 N Y 3.81401560385573 3.34677742713451 3.34677742713451 0 0.0 0.0 Y 0.0 N Y 8321 3103 ENSG00000141759 ENSG00000122490 + - 18 18 77793949 77711664 coding coding TXNL4A PQLC1 77732867 77662420 - - 0.0 77748240 77703462 - + N - - N SA470 1 0.0 1.0 1 0 1 N N 0.0 0.0 10 1.12717563047775 0.8874888584796059 1.12717563047775 0.8874888584796059 4 - - 0.98280058431368 HCT116-unstranded 10.0 860381 CCCGTCTCAGGTATCAAACTAGCATGGCTCGCGCCTCCTAGCAGGACTTGGCATAATAAAACGACCATCAGCATTCGGTTACCAGGAATCATGGTGTCTTGACAGAAAACAAGGCATATAATAACAGTCCATGATTCTTGACAGCCAATCTTGAACAAACTTGCTGGAAAGGCTCAGGGAAGCTGCAGCAGTGCGTTGCTCGGGATGGCACTACGGAATGGCTC|GTGCCAAATGGCGAAGAAGATGAGCGCGGCAGTGAGCAGCAGCGCCAGCATGTAGCAGAAGGCCGCGAACGTGAACGCCATGGCTGGGGAGGAGGAGCGGGGAGCGGCGCCGTTGCCAGCGGAGAAAGGCGGCGCA 7 0.8348135047884481 0.295547711497109 0.42130650341108894 N Y 3.6684832514345698 3.22589030454123 3.22589030454123 0 0.0 0.0 Y 0.0 N Y 8152 7500 ENSG00000125378 ENSG00000100528 - + 14 14 54425479 54908149 utr5p coding BMP4 CNIH 54416454 54893654 - - 0.0 54420118 54907965 + - N - 1.4345976136953 N SA470 1 0.0 1.0 1 0 1 N N 0.0 0.0 10 1.15956573480182 0.686670211670352 1.15956573480182 0.686670211670352 4 - 129.7 0.9784468782101308 HCT116-unstranded 10.0 673387 AACTTAAAGAAGGGCCAGACCCATACCTTGGAAGACTTCCAGCGAGTTCTTGATGTGAATCTCATGGGCACCTTCAATGTGATCCGCCTGGTGGCTGGTGAGATGGGCCAGAATGAACCAGACCAGGGAGGCCAACGTGGGGTCATCATCAACACTGCCAGTGTGGCTGCCTTCGAGGGTCA|GGGTGCTGTGGAATCTATTGCCATGAAGAACCCCAAAGAGAGGACAGCTCTATTTGAAGAGATTAGTCGTTCTGGGGAGCTGGCGCAGGAGTATGACAAGCGAAAGAAGGAAATGGTGAAGGCTGAAGAGGACACACAGTTTAATTACCATCGCAAGAAAAATAT 1 0.467188161157793 0.759467704316953 0.8450714846585029 Y Y 3.6272104187567 3.54872248456702 3.54872248456702 0 0.9939568094740509 0.0 Y 0.00287356321839072 N Y 8813 21257 ENSG00000072506 ENSG00000072501 + - X X 53461320 53449677 coding coding HSD17B10 SMC1A 53458206 53401070 - - 0.0 53458936 53440385 - + N - - N SA470 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 5 0.803274587237016 0.6348460447518349 0.803274587237016 0.6348460447518349 4 - - 0.977837060564704 HCT116-unstranded 10.0 796359 GATGAACATTAGGAGTGCTTAGTCTTTTTTCTACTTGCTTTTCCAAACACTCACAGTATATACAACAGGCAGCGGATTGTCTATTGTTTGTTGTTCCAACTTCTGCTGTCGAGAAGTTTAAACAGAAAGCAGGAGTAATGTGCCGATTCTGAAGTTGCCACAAAAAATAAGACACTG|AGAAAATGGGGCAGAAAGCATCGCAACAGTTGGCTCTGAAGGACAGCAAAGAGGTGCCCGTCGTCTGTGAGGTGGTCAGTGAAGCTATAGTCCATGCAGCTCAGAAACTGAAGGAGTACCTTGGATTTGAATATCCTCCAAGTAAACTCTGCCCAGCTGCAAATACTCTGAATGAGATCTTCTTAATCCATTTCA 7 1.0 0.486888095907004 0.805210996151914 Y Y 3.62361669590707 3.44615838200292 3.44615838200292 0 0.0 0.0 Y 0.0 N N 3981 403 ENSG00000110841 ENSG00000174236 + - 12 12 27848497 27850566 utr3p utr5p PPFIBP1 REP15 27676364 27849428 + + 0.0 27846004 27849491 + - N - - N SA470 1 0.0 1.0 1 0 2 N Y 0.0 0.0 5 0.796796566372201 1.08182948442405 1.08182948442405 0.796796566372201 4 - - 0.9932609216694972 HCT116-unstranded 10.0 1102626 AGGTGTTCTTCAACGGTGCCAACGTCCGGCAGGTGGACGTGCCCACGCTGACCGGAGCCTTCGGCATCCTGGCGGCCCACGTGCCCACGCTGCAGGTCCTGCGGCCGGGGCTGGTCGTGGTGCATGCAGAGGACGGCACCACCTCCAAATACTTT|GATCCTCCGAGCGGCGGCGACGGCTGTTGCTAAGGGAGGGGACGCGCGAGGAAGCGCGACCCGGGCGGCAGACGGCACCCAGCGCCACCAGCCGAGCGGCGCCCCCTCCCCAGGACCCTTAACCGCGCCGCGTCCCGGTCGCGCCCGCCGCCCTTTGAAGGAGAAGCAAGTGCCGTCCCCACCCCCGGAAGGCGCCCCCAGGAGCCGGAGCGACCTCGG 4 0.9554732485818472 0.7737244255068101 0.7770122216811609 Y Y 3.716171579866991 3.5184919402632304 3.5184919402632304 0 0.9935655913978492 0.0 Y 0.0 N Y 24868 18861 ENSG00000099624 ENSG00000167470 + - 19 19 1244824 1259139 coding utr5p ATP5D MIDN 1241749 1248552 + + 0.0 1242608 1249889 + - N - 0.199469510749955 N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 6 1.01057125491108 0.8421427124259041 1.01057125491108 0.8421427124259041 4 - 41.8333333333333 0.992455626252426 HCT116-unstranded 10.0 951196 ACTTGCTCAAATATTGGCAGCTAGACAGTTAGAAATTAAACAGATTCCATCTGATGGCCACTGTATGTATAAAGCCATTGAAGATCAACTGAAAGAAAAGGATTGTGCTCTGACTGTGGTTGCCTTGAGAAGTCAGACCGCTGAGTATATGCAAAGCCATGTGGAAGACTTTCTGCCATTTTTAACAAACCCTAATACAGGAGATATGTATACTC|CAGCTTTGACATTGTAAACCACAGACGAATTGGAGCTTGGCATTGAAAGGAGGTGTTCTGCAATGATTTTTTTTCTTGTTTAGAGAAGTTTACTTCTACAAGAAGAAATCTGAAAAATGACAGGAGCAAAGAGGAAAAAGAAAAGCATGCTTTGGAGCAAGATGCATACCCC 6 0.524662304128779 0.8320423197922149 0.523762599858434 Y Y 3.34256120966892 3.61038447681384 3.34256120966892 0 0.0 0.0 Y 0.0 N Y 2621 162 ENSG00000155100 ENSG00000147606 + - 8 8 92099323 92410378 coding intron OTUD6B SLC26A7 92082424 92221722 + + 0.0 92090896 92261767 + - N - 0.204990296087024 N SA470 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 5 1.06887344269442 1.04296135923516 1.06887344269442 1.04296135923516 4 - 0.4 0.977623373365348 HCT116-unstranded 10.0 1097711 CGAGGACACGCTGCGCCGAGACCATCAGCTCAGGGAGGCCCCGGACACAGCCGAGAAAGCCAAGAGCCATCTGGAGGTGCCGCTGGAGGAGAACGTGAACCGCCGCGTGCTGGAGGAGGGCAGCGTGGAGGCGCGCACCATCGAGGACGCCATTGCAGTGCTCAG|GTCAGTGCAGGAGCCCAGCCGCTGAGCCATGCCGGGCCCCGGGCGGCC 3 1.38960418416103e-05 0.459261145618204 0.8300029693117499 Y Y 3.60888739872753 3.14740237035155 3.14740237035155 0 0.0 0.0254088785046731 Y 0.0254088785046731 N Y 18402 212 ENSG00000007080 ENSG00000105642 + - 19 19 18054793 18110893 coding utr5p CCDC124 KCNN1 18043824 18062111 + + 0.0 18054184 18084617 + - N - - N SA470 1 0.0 1.0 1 0 2 N Y 0.0 0.0 5 0.732016357724055 0.7708844829129431 0.7708844829129431 0.732016357724055 4 - - 0.9839125490473192 HCT116-unstranded 10.0 383863 CAGAATGGCAGCGGTCTCCTTGATAAGCGGGAAGGCAGATGACAAAATGATGATGACCATGAGGACAGTCAGGCTGGGGTCAATGTAACACTGCCAGTTACACGGGTCCTCACTCTTCAGGGGAAGCACATAGAATATGATGGCCGTGATGACCACAACCACGGACCCCAGGGCATCTCCCATCACATGCAAAAGTACACCT|TGTGAAAAGGGTGACCTGGATGTCTTCCAAAATAGCTTGAAGTTTAGTCTCTGCCTCATTTTCAGCAACTGTCAGCTTTTCTCCAGTATCTCGTCTGACGGCTACAAACTGACAGCTCTTCATATC 9 0.945049828160997 0.3711241598737621 0.7172937485388491 N Y 3.3289184154217595 3.51935717616377 3.3289184154217595 0 0.0 0.0 Y 0.0 N Y 291 25322 ENSG00000196660 ENSG00000136628 - + 1 1 220131989 220220000 coding coding SLC30A10 EPRS 219858769 220141943 - - 0.0 220091836 220146580 + - N - 0.661762533293837 N SA470 1 0.0 1.0 1 0 1 N N 0.0 0.0 8 1.0235272966407098 0.647802086481464 1.0235272966407098 0.647802086481464 4 - 122.625 0.992259841123585 HCT116-unstranded 10.0 1096136 TGCAAAATATCTTTCAAGATGGGGCCACATATGTCACAAGGGAGAGCCGTCTGTGCGGGCAAACCTGCCTTGGAAGTATTAACATGTGACACTGCTATAGAAATGCTCTGTTCAGAAGATGACTCTTCATCCTTCACTTCATGCCAACAACC|TGGGTCGGGGCCCTCAGTGCCGCCGCCATCGGACTCTGGGCGGAGCGGGCCGGGAGCGGTGGACGATCCGGGCGGAGACAAGAGCAAAGCTGTCACCACCGCCGGCGACCGTCAGGCCCCGGCTGTGCAGCTGAGAAAACGACTCTCCTCGCGCCTTCTCGCTGTCAGCACCTAGGTCCAGATCCGGCACCCGCGGATGGAACTGACACAAGCCAAAGTGCCCGCCAC 17 0.3952125719822701 0.629248662155467 0.9352677219624008 Y Y 3.4676111165652994 3.27870928670295 3.27870928670295 0 0.0 0.00918635170603677 Y 0.00918635170603677 N Y 3674 356 ENSG00000213762 ENSG00000183647 - + 19 19 58134721 58119637 coding coding ZNF134 ZNF530 58125628 58111253 + + 0.0 58131528 58111502 - + N - 0.945882026156398 N SA470 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 6 0.971703129722196 1.12069760961293 1.12069760961293 0.971703129722196 4 - 2.66666666666667 0.98436631263397 HCT116-unstranded 10.0 540139 TCAATGCGTATCTTTGATAGTGAAGAAATACTGGCAGGTTATAAAAGGGAAGGGATTGACCCCACTCCCTATTACTGGTATACGGATCAGAGAAAATACGGTACATGTCCCCATGGAGGATATGGCTTGGGCTTGGAACGATTCTTAACGTGGATTCTGAATAG|CTACTCTAGTCTGTGGCATACAGGACCCAGCCCAGACCTTGACCCTGGCTCACCAGGCTCCCTGTGAGCCGGCCCCTGCCCACCTCCAGGACTCAGTACTCACCTCGCTAAATCCTTCAGATCGTCCCTTCTCACTGACCAACCAGCAGCTGCAGAACCCATCTTGCTGTCACAGGGCTTGCTGCCCTCCTGACCTGCAAGGCCTG 16 1.0 0.7593941924621229 0.893271392985786 N Y 3.61464054707278 3.5497555543369104 3.5497555543369104 0 0.0 0.0 Y 0.0 N Y 17709 17709 ENSG00000134440 ENSG00000134440 + - 18 18 55289445 55289445 coding downstream NARS NARS 55267888 55267888 - - 0.0 55269587 55269015 - + N - - N SA470 1 0.0 1.0 1 0 1 Y N 0.0 0.0 12 1.0623954218296 1.34742833988145 1.34742833988145 1.0623954218296 4 - - 0.991157737720567 HCT116-unstranded 10.0 377566 ATATCAAAAACTTTGGGGAAGAGGTGGATGATGAGAGTCTGAAAGAGCTATTCAGTCAGTTT|GGTCTGCGCAGGCATGGCACTAAGTGTCCCATGGCACATTTGGCCCTCATGGAGGCCTCAAAAGGGCAGGACCAGCACCCTCTTCTACGGAGGAAGGAACGGGCACAGCAGGTACATGATGTGGTCAAATTAACAAGAGGCAGAGGCCGGGTAAGTGGC 4 6.0193802990969105e-05 0.659325059089922 0.832152639381623 Y Y 3.35975787397237 3.59528445727371 3.35975787397237 0 0.0 0.0 Y 0.0 N Y 43699 1531 ENSG00000090621 ENSG00000182109 + - 1 1 40042462 40011859 coding intron PABPC4 RP11-69E11.4 40026488 39987952 - - 0.0 40035535 39994836 - + N - 2.36109847505667 N SA470 1 0.9047619047619052 1.0 1 0 2 N Y 0.0 0.9047619047619052 8 0.90692292107405 0.952269067127752 0.952269067127752 0.90692292107405 4 - 6.375 0.9817504411356122 HCT116-unstranded 10.0 295184 GCCCTTCAGGATGGATTTGCCAATCTTGAATGTGTGAATGACAACTACTGGTTTGGGAGGGACAAAAGCTGTGAATATTGCTTTGATGAACCACTGCTGAAAAGAACAGATAAATACCGAACATACAGCAAGAAACACTTTCGGATTTTCAG|GATTCCTCTCTTTGGTGCTGACACTATTGGCCAGAGAAGTCCTGATGGACCGGTACTGAGCAAAGCTGAATTTGTTGAGAAAGTTCGTCAGAGTAATCAGGCCTGTCATGATGGAGATTTCCACACAGCTATTGTTCTGTATAATGAAGCCCTGGCTGTTGACCCTCAGAACTGCATCTTATACAGCAATAGATCTGCAGCCTACATGAAAATCCAGCAGTATGACAAGGCACTG 8 0.9894835412658208 0.9730663671563508 0.342655350974516 Y Y 3.43681151080804 3.71720464963688 3.43681151080804 0 0.0 0.0 Y 0.0 N Y 640 171 ENSG00000183765 ENSG00000100154 + - 22 22 29138410 29075853 coding intron CHEK2 TTC28 29083731 28374004 - - 0.0 29121231 29025818 - + N - 3.06888207775448 N SA470 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 5 0.8486207332907181 1.12069760961293 1.12069760961293 0.8486207332907181 4 - 0 0.990940289148492 HCT116-unstranded 10.0 796371 GATGAGGTTTGCTTCTGATTTACTCTTGGTGATCGGCTTGGAGTCCGTCATTTTCCCCCAGATTTTTAACCAGGAAAAGGTCAGACAGGAGAAAATCAGACAAGATAGACAAAGAAGCAAGACCATTCAGAAAAT|CCTATCAATGGCACTGCCCTTCTTCTGAGCATAAGAGCCCCAGAGCAAGAAAACAAGGCCATTCGAGTTCTGATTTAGCCAGGACACAACTGCATCAGTGAACTGCTCCCAGCCTCGCTCCTTATGAGAGTTGGCTTGATGGGCACGAACCGTGAGGACAGCGTTGAGAAGGAGAACACCTATA 6 1.0 0.396246879718052 0.8372924551301949 Y Y 3.02228968272288 3.57489529770476 3.02228968272288 0 0.0 0.0 Y 0.0 N Y 2808 8172 ENSG00000076555 ENSG00000076248 - + 12 12 109706031 109548797 utr5p coding ACACB UNG 109554400 109535379 + + 0.0 109577202 109541416 - + N - 0.837934442448811 N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 5 0.5311977109148011 0.8939668793444209 0.8939668793444209 0.5311977109148011 4 - 213.4 0.965838423409403 HCT116-unstranded 10.0 220131 GCTGCCCCAAAACAGCTCCATGGCGAGAGGCTTCAGCTGGGAGAGGTACCAGCTGGCTGTGACCCAGCGGAAGGAGGAGGAGCCCAGTAGCAGCAGCGTTTTCAATCAGAATGACCCTTGGGCCCCCACTGTGGATTTCAGTGACTTCATCAACAATGAGACCATTGCTGGAAAG|GTGAATGCATCATCTTCAAGGTCGGCTCGAACATCTCTTCCTGAGAAGTCTTCCTAGATGTGTCCAGGTTGGAGAGGATTCTTCCCCAGGTACACGAGGGAAGCACATCCCCCTTCTGGAACCCTCAGTCTCTTCCAGTTCCCCTCAGGACCTGGCTGCCCAAATGACAGTGGCTTTCCACATGTTTGTCACCTGGAAAAGAAGCCGCTCAGCCATTGGCTGTGAAGGAC 21 1.0 0.9745867584426208 0.394216974697602 Y Y 3.52361324642271 3.5737384367554905 3.52361324642271 0 0.0 0.0 Y 0.0 N N 4351 893 ENSG00000131471 ENSG00000260105 + - 17 17 41010147 41026386 coding intron AOC3 AOC4 41003201 41017939 + + 0.0 41007590 41018124 + - N - 0.0217989819838899 N SA470 1 0.294642857142857 1.0 1 0 2 N Y 0.0 0.294642857142857 17 1.1077415678833 1.45107667371848 1.45107667371848 1.1077415678833 4 - 0 0.993718818353945 HCT116-unstranded 10.0 109053 ATTCTGCCTGCAGAGCCAGAGGCTGAGCAGAAGAAGAATACAAACAGCAATGTGGCAATGGACGAAGAGGACCCAGCATAGAAGAGCACAGCTGGCCCCGGCGTTTCATGAAGTCAGAAGGCCTGGCAGCCATTTCCTGGACGTTGAGAGGATTGTTTATTTGATTTTTATCCTCATCCCAGCAGGCCTGGCTTTGTG|ATGTTGGTTATCTTTCTGAAGTAGACTGTCCATGGCCTGAACATTTTCCGAAAATCATTTTGAGCAAAATATCTGTTTAATAACAAGATAACCACATCAAGATGGTTGGAAAGCTGAAGCAGAACTTACTATTGGCATGTCTGGTGATTAGTTCTGTGACTGTGTTTTACCTGGGCCAGCATGCCATGGAATGCC 4 0.915366619230005 0.578314860916761 0.78879744097589 Y Y 3.2802368700128 3.6491271616355 3.2802368700128 11 0.0 0.0 Y 0.0 N N 3197 376 ENSG00000241258 ENSG00000169902 + - 7 7 65619555 65885530 utr3p utr5p CRCP TPST1 65579591 65670186 + + 0.0 65617461 65705312 + - N - 0.36425936978656 N SA470 1 0.0 1.0 1 0 2 N Y 0.0 0.0 5 1.25025802690923 1.09478552615367 1.25025802690923 1.09478552615367 4 - 7 0.97160783957411 HCT116-unstranded 10.0 1134219 AAAATCATGAAGTGGATACTAGTGTGTCTGGAGCGGGCTGCACTACATACAAGGAACCCTTGGATTTCCGAGAAGTAGGAGAAAAAATCTTGAAAAAGTATGTATCTGTGTGTGAAGGACCCCTGAAAGAACAAGAATGGAATACAACGAATGCAAAACAAATTTTAAACTTCTTTCATCATCGCTGTAACTA|CTATAGAATGTGCTGTCCATACACAAGAAGAGCTTCAAAATCCAGCCGTCCTATGTATGGAGCTGTCACTTCTTTTTTACACTCCCTGATCATTCAGAATGAACCACGATTTGCTATGTTTGGACCAGGTTTGGAAGAATTGAATACCTCTTTGGTGTTGA 7 0.6800462313025689 0.885450991847596 0.5992857181520601 Y Y 3.1238300630869 3.6272104187567 3.1238300630869 0 0.0 0.0 Y 0.0 N N 4525 361 ENSG00000205765 ENSG00000151876 + - 5 5 41921738 41941845 utr3p coding C5orf51 FBXO4 41904290 41925356 + + 0.0 41917400 41929799 + - N - 1.2173776630694 N SA470 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 6 1.20491188085552 1.0623954218296 1.20491188085552 1.0623954218296 4 - 13.1666666666667 0.975906977972976 HCT116-unstranded 10.0 5305 GATCCCTTCCAACCCATGAGTGGGCGGTTTAAGGACCGGGTGTCTTGGGATGGGAATCCTGAGCGGTACGATGCCTCCATCCTTCTCTGGAAACTGCAGTTCGACGACAATGGGACATACACCTGCCAGGTGAAGAACCCACCTGATGTTGATGGGGTGATAGGGGAGATCCGGCTCAGCGTCGTGCACACT|GGTGTTTATATCGTCTTTTCCTTGGAGATTCGTGCAGATGCCCATGTCCGAGGTTATGTTGGAGAAAAGATCAAGTTGAAATGCACTTTCAAGTCAACTTCAGATGTCACTGACAAACTTACTATAGACTGGACATATCGCCCTCCCAGCAGCAGCCACACAGTATCAGTAA 5 1.0 0.8390077821073721 0.27506412780261896 Y Y 3.5874651693886803 3.51782959285392 3.51782959285392 0 0.0 0.0 Y 0.0 N Y 640 1125 ENSG00000149573 ENSG00000160588 + - 11 11 118135251 118123065 coding intron MPZL2 MPZL3 118124118 118097409 - - 0.0 118133153 118111092 - + N - 1.05596301237128 N SA470 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 9 1.25025802690923 0.7708844829129431 1.25025802690923 0.7708844829129431 4 - 8.44444444444444 0.988958290693176 HCT116-unstranded 10.0 6962 GGAGCTGGTGTCCTGTTCTGACTGTGGCCGCTCAGGGCATCCATCTTGCCTCCAATTTACCCCCGTGATGATGGCGGCAGTGAAGACATACCGCTGGCAGTGCATCGAGTGCAAATGTTGCAATATCTGCGGCACCTCCGAGAATGACGACCAGTTGCTCTTCTGTGATGACTGCGATCGTGGCTACCACATGTACTGTCTCACCCCGTCCATGTCTGAGCCCCCTGAAGG|TGCCCCGGAGAGGCCATGGAGCTGAGCAGCAAGAAGAAGCTTCACGCCCTGTCCCTGGCCGAGAAGATCCAGGTGCTGGAACTCCTGGATGAGTCCAAGATGTCCCAGTCGGAGGTGGCCCGGCGCTTCCAGGTTTCCCAGCCCCAGATCTCG 30 0.405481854431177 0.588937086120602 0.7107606061473709 Y Y 3.4629538187222404 3.1295204306998503 3.1295204306998503 1 0.0 0.0 Y 0.0 N Y 4198 775 ENSG00000133884 ENSG00000173825 + - 11 11 65120720 65125084 coding utr5p DPF2 TIGD3 65101225 65122238 + + 0.0 65116402 65123264 + - N - 0.029459765691303 N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 6 1.1919558391258898 0.816230628966645 1.1919558391258898 0.816230628966645 4 - 1 0.967919108152111 HCT116-unstranded 10.0 1136111 ATAATGTCTCCTTTAGATTTCCCTGTAGCATCTTCAGAAAGCAGTGGGAGTTGGTATGATCATGAATACTGCTGCCATGTCCTTCACCCCAACAGAGAATCATCAGATTAAATTTTCCATTTCCTTGATCCACAAGATTTCGGGTA|TACTTTTTTTCTTGGTGTCGCCAGCAGGTTCCTCTGTTCCCGGGGAAACTGCAGCGGAAGACGGGGGCTCCGGGGTGGTTGTTTCTGGGGAGACATCCGTAAGTCCTTCCCCTCCAGCAGCAATTGAAGTAGGAAGCTGCAACACAGACTGCGGCTCCTCCGCCATCTTGCTTGGAGACACTCGAGAGCGG 5 0.8842374444505601 0.3097127641312189 0.574485043629794 Y Y 3.30960217841604 3.32423818963975 3.30960217841604 1 0.0 0.0 Y 0.0 N Y 178 10561 ENSG00000129596 ENSG00000145782 - + 5 5 115152651 115177555 coding coding CDO1 ATG12 115140430 115163893 - - 0.0 115148955 115177087 + - N - 0.601146013191505 N SA470 2 0.0 1.11111111111111 1 1 1 N Y 0.0 0.0 9 0.90692292107405 0.7838405246425719 0.90692292107405 0.7838405246425719 4 - 143.555555555556 0.978358353830773 HCT116-unstranded 10.0 671648 GAGCAGCAGCAGGCAGGTGAGACCTTTGAGCACTTCCGCCATGACCACAGCAGTGGTGGCAAAGAAGCGGTCCCCTGGCAACGTGCGGGCGTAGCGGATGCTGAGGATGAGGGAGGCATTCTGGACCACCAGCACAGCTAGGGATATGTACTTCAGGCGCCTGTGAG|CTTAGTAATACTGGACTTTAATGACTGGTAATGACCTGTAAAACCAAGTCAACAAATGTCCATCTATCCCTGTGACATGGCCATGGGATGGCTCTTCTGACCATTGGGGGCCAGGCCAGGCCAGGCCAGGCTTAGGGTAGCAAGGACCAGGCCAAAGGGGCAGGGCCTCCTTTGGAGGGGTTGAGGGGTACAT 8 1.0 0.628432513807496 0.452565661170384 Y Y 3.69784855983781 3.36145329115156 3.36145329115156 1 0.0 0.0 Y 0.0 N N 6058 537 ENSG00000102100 ENSG00000102096 - + X X 48769235 48776301 coding utr3p SLC35A2 PIM2 48760459 48770459 - - 0.0 48767273 48771277 + - N - 1.03327215123575 N SA470 1 0.12637362637362598 1.0 1 0 1 N Y 0.0 0.12637362637362598 6 1.12069760961293 1.16604375566664 1.16604375566664 1.12069760961293 4 - 15.5 0.984809465286853 HCT116-unstranded 10.0 651361 AACCTCCACAATGTTGAGTAGCTCCAGGCGGTCGATGCAGCCATTGCCATCCTTATCATAGATCTTGAATGTCCACTTCAGCTTGTGCTCCAGGGTGCCCCTCAGCACGAGATTCAGAGCTGCCACGTACTCCAGGAAGTCGATGGTGTTGTCCTGC|CAGAGGCGCCGGCACACAGCACCGAACGCTGTCCGCGCCGCCATCTTGCCGGTCCCGACCTCTCAGGATTGCTTCCGGGGTTACAGCGGCGTCCTCAGACCATAGAGTTCCGCAAAAGA 12 0.0238492191004242 0.948799073254346 0.379039776162391 Y Y 3.82402482245992 3.34520999103131 3.34520999103131 0 0.0 0.0 Y 0.0 N Y 660 3607 ENSG00000112599 ENSG00000048544 - + 6 6 42162654 42185603 intron coding GUCA1B MRPS10 42152139 42174539 - - 0.0 42156469 42185540 + - N 33.1596226593896 1.00773190933999 N SA470 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 8 0.99113719231664 0.576543856968503 0.99113719231664 0.576543856968503 4 0.375 46.5 0.951552375695177 HCT116-unstranded 10.0 1135861 GAGCTATGAGCATTGTTTCACAGCGGCCGAAGCTGTGGATTGGCTGCATGAGCTGCTGAGGTGCAGTCAAAACTTCGGCCCTGAAGTGACCCGCAAACAAACGGTCCAGCTGCTAAAAAAATTCCTGAAGAATCACGTTATTGAAGACATCAAGGGAAAATGGGGTGAGGAAGATTTTGAAGACAATCGTCACTTATACAG|TTCTGGATCAGCACAGAAAACTCTCTCCTTTGTCAGATTGAAAACCTGTAGCAGGGGGACAGCCAAGATGGCCGAATAGGAACAGCTCTGGTCTACAGCTTCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAG 6 1.0 0.23496067528824505 0.105360624095414 Y Y 3.57489529770476 3.472331195140661 3.472331195140661 0 0.0 0.009284255070771907 Y 0.009284255070771907 N N 1449 200 ENSG00000035499 ENSG00000113448 + - 5 5 59996017 59817947 coding intron DEPDC1B PDE4D 59892739 58264865 - - 0.0 59982789 59798489 - + N - 2.89710997280718 N SA470 2 0.386363636363636 1.16666666666667 1 1 3 N Y 0.0 0.386363636363636 6 0.72553833685924 0.7125822951296109 0.72553833685924 0.7125822951296109 4 - 0 0.934160172315942 HCT116-unstranded 10.0 383789 ACGGAGACTTCGCCCTTCATGTGGTCCAACCTGGGCATTGGCCTAGCTATCTCCCTGTCTGTGGTTGGGGCAGCCTGGGGCATCTATATTACCGGCTCCTCCATCATTGGTGGAGGAGTGAAGGCCCCCAGGATCAAGACCAAGAACCTGGTCAG|GCCAGCAGCCGGATGCCCGGGCCCACTGGGCGGGCCAGTGGCCGCCTGCGGGATGAGCAGACTGCTGGGGGGGACGCTGGAGCGCGTCTGCAAGGCTGTGCTCCTTCTCTGCCTGCTGCACTTCCTCGTGGCCGTCATCCTCTACTTTGACGTCTACGCCCAGCACCTGGCCTTCTTCAG 5 1.0 0.4025708677761409 0.7888519273478459 Y Y 3.37655331069169 3.0302022565637405 3.0302022565637405 9 0.0 0.0 Y 0.00297619047619047 N Y 9675 10052 ENSG00000117410 ENSG00000117411 + - 1 1 44443967 44456840 coding coding ATP6V0B B4GALT2 44440159 44444615 + + 0.0 44442051 44446781 + - N - - N SA470 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 6 0.952269067127752 0.7579284411833129 0.952269067127752 0.7579284411833129 4 - - 0.9405070868325748 HCT116-unstranded 10.0 1037376 GTCCAAATGAAAAGCCTTTGTACACTGCGGAACCAGTGACCCTGGAGGATTTGCAGTTACTTGCTGATCTATTCTACCTTCCTTACGAGCATGGACCCAAAGGAGCACAGATGTTACGGGAATTTCAATGGCTTCGAGCAAATAGTAGTGTTGTCAGTGTCAATTGCAAAGGAAAAGACTCTGAAAAA|CTCTGCCTCACCGAGGGAGCCAAAGACGAGTGTAATGTGGTAGAAGTTGTGGCCCGGAACCATGACCATCAGGAGATCGCAGTCCCTGTGGCCAACCTCAAGCTGTCCTGCCAACCCATGCTCAGTCTGGATGACTTCCAGCTCCAACCACCTGTAACCTTCCGCCTGAAGTCGGGCT 8 0.797997513956692 0.928261865962117 0.369297659998082 Y Y 3.2525669787887503 3.67423639977982 3.2525669787887503 0 0.0 0.0 Y 0.0 N Y 9397 8424 ENSG00000198408 ENSG00000107833 + - 10 10 103578696 103543170 coding coding MGEA5 NPM3 103544200 103541082 - - 0.0 103558599 103542354 - + N - - N SA470 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 15 1.23082396431478 1.14660969307219 1.23082396431478 1.14660969307219 4 - - 0.988659864702272 HCT116-unstranded 10.0 384472 TGCCAGTAAAGCAGTGGTGAATGCCGCAATTCCAGCCTATCACCTAAGAGACCTTATCAAAAGCATGCTTCATGATGATCCAAGCAGAAGAATTCCTGCTGAAATGGCATTGTGCAGCCCATTCTTTAGCATTCCTTTT|GGTTTACAGGTACATACATTACACCCCTATTTCTACAAAGCTTGGCTATTAGAGCATTATGAACATTAATGACCTCAAACTCACGTTGTCCAAAGCTGGGCAAGAGCACCTACTACGTTTCTGGAATGAGCTTGAAGAA 16 0.00595681848190606 0.590890077075008 0.5319880344300449 N Y 3.31998211938081 3.15000287622464 3.15000287622464 5 0.0 0.0 Y 0.0 N Y 13127 3191 ENSG00000152332 ENSG00000117143 + - 1 1 162499419 162569627 coding intron UHMK1 UAP1 162467041 162531321 + + 0.0 162482366 162535802 + - N - 0.181777479767356 N SA470 1 0.0 1.0 1 0 2 N N 0.0 0.0 10 1.36686240247589 0.9198789628036792 1.36686240247589 0.9198789628036792 4 - 17.4 0.9650694167693852 HCT116-unstranded 10.0 1037085 GATTCTGGTACGGGAGAATCTGTTATGGCACCAGTAGATGTAGACCTGAACCTGGTTTCAAATATATTGGAATCCTATAGCTCCCAAGCTGGACTGGCAGGACCTGCTTCCAATCTTTTACAAAGCATGGGAGTGCAGCTGCCTGACAACACCGATCACAGACCAACAAGT|GTGTGATCCTGTAAAATTAAATCTTCCAAGATGATCTGGTATATATTAATTATAGGAATTCTGCTTCCCCAGTCTTTGGCTCATCCAGGCTTTTTTACTTCAATTGGTCAGATGACTGATTTGATCCATACTGAGAAAGATC 10 0.5567080883615091 0.844084463961114 0.492059015208886 Y Y 3.46653819400206 3.40591861909494 3.40591861909494 1 0.992980174037858 0.0 Y 0.992980174037858 N Y 2298 1729 ENSG00000122882 ENSG00000122884 + - 10 10 74927853 74856732 coding utr5p ECD P4HA1 74889913 74766975 - - 0.0 74894361 74834673 - + N - - N SA470 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 6 0.90692292107405 0.7579284411833129 0.90692292107405 0.7579284411833129 4 - - 0.97613905433443 HCT116-unstranded CGHSA0381 10.0 796234 GACTGATGGACATACATTATCTGAGAAAAGAAACTACCAGGTGACAAACAGCATGTTTGGTGCTTCAAGAAAGAAGTTTGTAGAGGGGGTCGACAGTGACTACCATGACGAAAACATGTACTACAGCCAGTCTTCTATGTTTCCACATCGGTCAGAAAAAGAT|TGCTCCTATATCCCTCCCTGTAAGAGAGAAAATCAGAAGAATTTGGAAAGTGTCATGAATTGGCAACAGTACTGGAAAGATGAGATTGGTTCCCAGCCATTTACTTGCTATTTTAATCAACATCAAAGACCAGATGATGTG 9 0.31546305439113004 0.671428067059416 0.623439230177564 Y Y 3.57808779297027 3.2510393954789 3.2510393954789 0 0.0 0.00327868852459001 Y 0.0244855249389604 N Y 2430 368 ENSG00000111596 ENSG00000135643 + - 12 12 70748773 70828072 coding coding CNOT2 KCNMB4 70636774 70760056 + + 0.0 70704797 70793989 + - N - - N SA470 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 11 0.913400941938865 0.8356646915610891 0.913400941938865 0.8356646915610891 4 - - 0.97102894138966 HCT116-unstranded 10.0 914669 TGCCTTTTCTGTGGGGCTATACTATGTTCTCAGAACATTTGCTGCCAGGAAATTGTGAACGGGGAAGAGGTTGGAGCTTGCATTTTTCACGCACTTCACTGTGGAGCCGGAGTCTGCATTTTCCTAAAAATCAGAGAATGCCGAGTGGTCCTGGTTGAAGGTAAAGCCAGAGGCTGTGCCTATCCAGCTCCTTACTTGGATGAATATGGAGAAACAGACCCTGGCCTGAA|GTTAAATGGAAACCACCCTTGGGAACTGGATGCCTGTGTAGCTGTTCTACCATATCAGTGTATTGCAATGAGTGGGGGAGGAGAGCAGCTGGATATCCTGAGTGTTGGAATCCTAGTGAAAGAAAGATGGAAAGTGGGAAAAT 8 0.727811835690562 0.821914889446998 0.208839679084258 N Y 3.4210491438586 3.33833564463353 3.33833564463353 0 0.0 0.0 Y 0.0 N Y 1667 298 ENSG00000159459 ENSG00000128881 + - 15 15 43398311 43213007 coding utr5p UBR1 TTBK2 43235095 43030932 - - 0.0 43242460 43170882 - + N - - N SA470 1 0.0 1.0 1 0 1 Y N 0.0 0.0 8 1.39925250679996 0.8874888584796059 1.39925250679996 0.8874888584796059 4 - - 0.9648435617333472 HCT116-unstranded 10.0 6903 ACCAAAGCAAGAGAGGGTAAACTACAGCCACATGAATTCCAGGGTGGCACTTTTACGATCTCCAATTTAGGAATGTTTGGAATTAAGAATTTCTCTGCTATTATTAACCCACCTCAAGCATGTATTTTGGCAATTGGTGCTTCAGAGGATAAACTGGTCCCTGCAGATAATGAAAAAGG|ATTGAAGAATGTCCCGGATTCCACTGGGGAAGGTCCTCCTGAGGAATGTCATCCGGCACACAGATGCTCACAATAAGATTCAGGAGGAATCAGATATGTGGAAAATAAGAGAACTGGAAAAACAGATGGAAGATGCT 6 0.4563093442311 0.3730598946625801 0.41738010187291497 Y Y 3.48639814491089 3.55231620741665 3.48639814491089 0 0.0 0.0 Y 0.0 N Y 5505 6399 ENSG00000150768 ENSG00000150776 + - 11 11 111935114 111955874 coding utr5p DLAT C11orf57 111895538 111944810 + + 0.0 111931898 111946291 + - N - - N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 6 0.971703129722196 0.7644064620481279 0.971703129722196 0.7644064620481279 4 - - 0.966237949193434 HCT116-unstranded 10.0 380126 AATGGGGAGCATGATGCCTCCACCAGTAGGCATGGTTGCTCAGCCAGGAGCTTCTGGGATGGTTGCCCCCATGGCCATGCCTGCAGGCTATATGGGTGGCATGCAGGCATCAATGATGGGTGTGCCGAATGGAATGATGACCACCCAGCAGGCTGGCTACATGGCAGGCATGGCAGCTATGCCCCAGACTGTGTATGGGGTCCAGCCAGCTCAGCAGCTGCAATGGAACCTTA|CTCAGCATCTGCAGGGGCTGCTGAGAGTAAATACTTGGCGCCTCCAGCTGCTGGCCAAGGAGACAGATGGAGCTCAAGTTGGGAGATACGCCCTGAGAGCCGATGATAGACACAAGTCCAGATCTCGGATTTTGATACTGTATGTTCCCTGGGTTCCTGAGAGAGGACATTGAGGAGTAGGAGTCGGCGATTAAGGAGATCGGTA 21 1.0 0.26488877160322605 0.472731889758141 Y Y 3.65657572715995 3.5597647729410897 3.5597647729410897 1 0.0 0.0 Y 0.021745652536252 N Y 531 228 ENSG00000084070 ENSG00000187801 + - 1 1 40888998 40929390 coding intron SMAP2 ZNF643 40810522 40915774 + + 0.0 40882768 40916328 + - N - 0.0633473009613015 N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 18 1.39925250679996 1.3215162564221898 1.39925250679996 1.3215162564221898 4 - 0 0.977736406519806 HCT116-unstranded 10.0 383125 AGAGCAGCTCTCTTTGGACCATAATAATATTGAGAATCTGCCCTTGCAGCTTTTCCTATGCACTAAACTACATTATTTGGATCTAAGCTATAACCACTTGACCTTCATTCCAGAAGAAATCCAGTATCTGAGTAATTTGCAGTACTTTGCTGTGACCAACAACAAT|GTCATGCAAGACAAGATAATCTGCCTTCCGAAAAGAGTGCAGCCTGCTCAGAACCACTCTTCCCTTTCGAATGTCTCTCAAGCAGTTGCCAGTACCACTCCACTGCCTCCACCTAAACCATCTCCTGCTAACCCCATCACTGTGGAAATGAAAGGCCTGAAGACAGATTTGGACCTTCAGCAGTACAGCTTTATAAATCAGATGTGTTATGAGCGAGCCCT 11 0.915725881676802 0.825543243309715 0.71268911001313 Y Y 3.5497555543369104 3.67849247003875 3.5497555543369104 3 0.99399142963607 0.0 Y 0.0 N Y 3139 5054 ENSG00000197147 ENSG00000171488 + - 1 1 90063423 90398809 coding coding LRRC8B LRRC8C 89990395 90098631 + + 0.0 90050348 90178268 + - N - 0.815413784878799 N SA470 2 0.0 1.25 1 2 1 Y Y 0.0 0.0 8 1.08830750528886 1.23082396431478 1.23082396431478 1.08830750528886 4 - 35 0.972631174669374 HCT116-unstranded 10.0 540729 GGCTTCCGTAGGAAGGCGCCGGCCGTGGAGGCGCCACGTCCCTTGCGGCGGCGGGAGAGAAATCGCTTGGACTTCGGGGCGGCCTCGGACGGCCATGGCCTTTACCCTGTACTCACTGCTGCAGGCAGCCCTGCTCTGCGTCAACGCCATCGCAGTGCTGCACGAGGAGCGATTCCTCAAGAACA|GTTACGTGGTGCTTCTGTAATCATTAGGTTTGTGACCAATACAACCAAAGAGAGCAAGCAAGACCTGTTAGAAAGGTTGAGAAAATTGGAATTTGATATCTCTGAAGATGAAATATTCACATCTCTGACTGCAGCCAGAAGTTTACTAGAGCGGAAACAAGTCAGACCCATGCTGCTAGTT 13 1.0 0.6995640748039289 0.8373254727386229 Y Y 3.72824693801095 3.69784855983781 3.69784855983781 1 0.9944901922411072 0.0 Y 0.0 N Y 2268 1344 ENSG00000134049 ENSG00000167220 + - 18 18 44702745 44676871 coding coding IER3IP1 HDHD2 44681413 44633774 - - 0.0 44702558 44661075 - + N - - N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 11 1.21786792258515 1.14660969307219 1.21786792258515 1.14660969307219 4 - - 0.981959494271754 HCT116-unstranded CGHSA0518 10.0 6845 AGTCACAGCATACACTGGAACAGGAGCTGGGTCAGCCTCTGCAGCTGCCTCAGTTTCCCCAGGGACCCCACCCCCCTTTGGGGGTCAGGAACACTACACTGCACAGGAAGCCTTCACACTGGAAGGGGGACCTGCGCCCCCACATCTGAAACCT|GTTATGGCCACATGGCCCCACTATCGCCAGGCGGAAAGGCCTTCTGCATGGTCTATGCAGCCCTGGGGCTGCCAGCCTCCTTAGCTCTCGTGGCCACCCTGCGCCATTGCCTGCTGCCTGTGCTCAGCCGCCCACGTGCCTGGGTAGCGGTCCACTGGCAGCTGTCACCGGCCAGGGCTGCGCTGCTGCAGGCAGTTGCACTGGGACTGCTGGT 7 1.0 0.313238309367582 0.10428970462820596 Y Y 3.22639416565101 3.63040291402221 3.22639416565101 3 0.0 0.0 Y 0.0 N N 6268 351 ENSG00000173327 ENSG00000173338 + - 11 11 65382853 65363467 utr3p coding MAP3K11 KCNK7 65365226 65360326 - - 0.0 65365566 65361345 - + N - - N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 6 0.796796566372201 1.13365365134256 1.13365365134256 0.796796566372201 4 - - 0.9827452214188828 HCT116-unstranded 10.0 656181 GCTTCTGCCTAAGAAGACCGAGAGTCACCACAAGGCCAAGGGCAAGTGATTTGACAGGTATCTGAGCTCCCGGAAACGCTATCAAACCCAAAGGCTCTTTTCAGAGCCCCCCTACCGTTTCAAAGGAAGAGCTAACCTCACTGCTTGTAGGTAGAAGGAAAAAAGGCACTA|AGGGGAGAGACATGAAGACAGAGGAGAAATGAATGCATAAAATAACTGATAATATGAATCTATACATAGAACTTAGGAAGTCTCATCTGCCTGAAAATGACTGTGTGGATCCCACCCAAATCCAACTCATCCTGGTTTGCTGCACACTGGTTCATCAAAAGAAGGTTACCGAGGGGAAGGAACTAAAGGTGTTTGCACTTCATG 6 0.923288519126914 0.6107496789519499 0.965451168620511 N Y 3.50848272165904 2.95165154164176 2.95165154164176 0 0.0 0.0 Y 0.0 N Y 1916 3183 ENSG00000180573 ENSG00000158373 + - 6 6 26139336 26171577 intron intron HIST1H2AC HIST1H2BD 26124373 26158349 + + 0.0 26124977 26171203 + - N 1.8814967805403 1.73908201359396 N SA470 1 0.0 1.0 1 0 1 N N 0.0 0.0 5 1.03648333837034 0.971703129722196 1.03648333837034 0.971703129722196 4 38.6 193 0.968336281314528 HCT116-unstranded 10.0 1102672 TCCATAAAGTCACAGAGTTCCCCTCCATTGTGGATTTCTGCCATTTGTATGCCGTTTGATGTTTTGTTAAGCCAAAAAAAAATGTTGTTGAGGTGCTGACACTTTGGTTTTAACTTGCCATTCTTGGGGAACTCCGGTTGGCAATGTGCTCAACTTTTCCTTCTCCTCCTCCAGTCAAGAGACAGACTGAGTTTGAATAGGT|CCCACAGAGGCCAGGTTCATGTAGTTCTCCAGCATCACATCTCTGTAGAGGTATTTCTGAGTTGTGTCCAGTAAAGCCCACTCCTCTGGGGTGAACTCCACAGCCACATCATCAAACGTCACTGAATCCTAAGTCATCAAACACATGCTGGTTTGAGCCAATGAACAC 8 0.9652348255032048 0.761231165984443 0.747752670672597 N Y 3.5246463161926003 3.46079439322662 3.46079439322662 3 0.0 0.00269541778975735 Y 0.00269541778975735 N Y 16585 6530 ENSG00000197961 ENSG00000171466 - + 19 19 9695209 9785776 utr5p intron ZNF121 ZNF562 9671029 9759330 - - 0.0 9679758 9768685 + - N - 9.85240707743944 N SA470 3 0.0 2.5 2 6 1 Y N 0.0 0.0 6 1.24378000604441 0.99113719231664 1.24378000604441 0.99113719231664 4 - 13.8333333333333 0.9234067693288242 HCT116-unstranded 10.0 613748 GGCAAGATGGCGCCGGTGGGGGTGGAGAAGAAGCTGCTGCTAGGTCCCAACGGGCCCGCGGTGGCGGCCGCCGGCGACCTGACCAGTGAGGAGGAGGAAGGCCAGAGCCTATGGTCCTCCATTCTGAGCGAAGTGTCCACCCGCGCCAGGTCCAAGCTGCCGTCCGGCAAGAACATCCTGGTCTTCGGTGAAGATGGTTCTGGTAAAACAACCCTCATGACTAAACTACAAGGAGCTGAGCATGGCAAAAAAGGAAGAGGCCTAGAATATCTCTACCTCAGTGTCCATGATGAGGACCGAGAT|GATCTTGGCCCTGATTGCATTCATCTGCATAGAGACCATCATGGCATGCTCCCCGTGTGAAGGCCTCTACTTTTTTGAGTTTGTGAGCTGCAGTGCGTTTGTGGTGACTGGCGTCTTGCTGATTATGTTCAGTCTCAACCTGCACATGAGGATCCCCCAGATCAACTGGAATCTGACAGATTTGGTCAACACTGGACTCAGCGCTTTCCTTTTCTT 1 8.55946786190712e-11 0.723876107224215 0.820901430340625 Y Y 3.60888739872753 3.46335504630636 3.46335504630636 0 0.0 0.0 Y 0.0 N Y 4470 3663 ENSG00000135720 ENSG00000183723 + - 16 16 66785701 66730610 coding coding DYNC1LI2 CMTM4 66754796 66648653 - - 0.0 66783100 66670484 - + N - - N SA470 1 0.0 1.0 1 0 2 N Y 0.0 0.0 8 1.09478552615367 1.15956573480182 1.15956573480182 1.09478552615367 4 - - 0.98573822261571 HCT116-unstranded 10.0 615827 CTTGTACCACAAAGGCCTGCTGAAATTTGCAGTTTCTGCTGAATCCTTGCCAGAGACCCTCGTCATTTTTGTTGCAGACATGTCTAGACCTTGGACTGTGATGGAATCTCTGCAGAAATGGGCTAGTGTTTTACGTGAGCACATTGATAAAATGAAAATTCCACCAGAAAAAATGAGGGAGCTGGAACGGAAGT|ATCTTGGCCCTGATTGCATTCATCTGCATAGAGACCATCATGGCATGCTCCCCGTGTGAAGGCCTCTACTTTTTTGAGTTTGTGAGCTGCAGTGCGTTTGTGGTGACTGGCGTCTTGCTGATTATGTTCAGTCTCAACCTGCACATGAGGATCCCCCAGATCAACTGGAATCTGACAGATTTGGTCAACA 17 0.452662342503902 0.8242027706984121 0.9137103929907908 Y Y 3.358283723825 3.45400817511148 3.358283723825 3 0.0 0.0 Y 0.0 N Y 4470 3663 ENSG00000135720 ENSG00000183723 + - 16 16 66785701 66730610 coding coding DYNC1LI2 CMTM4 66754796 66648653 - - 0.0 66776341 66670484 - + N - - N SA470 1 0.0 1.0 1 0 2 N Y 0.0 0.0 6 1.08830750528886 1.04943938009997 1.08830750528886 1.04943938009997 4 - - 0.990466625190776 HCT116-unstranded 10.0 732720 CCTTCTTCGCCCCGGCGCCGGGGGCTGTAGCCCTGGTCCCCGCTCCTCTGTCGGGCCAGTCTGCAGGCGGAGAGAGTCGGACGGCGCCCGGAGCGCGGATCTCGCCTTGTGGAGGACAGCGCGTCGGCTGCGGTTCTCTCTCGACCCCTTCTGCCCGGCGCTTCGGCCCGGGCCGCTCAGGTGCAG|TAACAGTGTATCATGTATGCCACTGATTCCAGGGGACACTCCCCTGCTTTCCTCCAACCTCAGAATGGAAATAGTCGTCACCCATCTGGCTATGTTCCAGGGAAGGTTGTCCCATTGCGTCCCCCTCCTCCTCCAAAGAGTCAAGCTTCAGCCAAATTT 11 0.8659583426309471 0.27800614055062395 0.605199303833235 Y Y 3.13483249866763 3.6852786881538906 3.13483249866763 2 0.0 0.0 Y 0.0 N Y 1534 1493 ENSG00000107362 ENSG00000135048 + - 9 9 74525847 74431606 utr5p utr5p FAM108B1 TMEM2 74477368 74298282 - - 0.0 74525550 74365301 - + N - - N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 5 0.952269067127752 0.913400941938865 0.952269067127752 0.913400941938865 4 - - 0.972516063904538 HCT116-unstranded 10.0 107079 GAGGGCGAAGAGGCGTTCCTCTTGATCCAAAGTGAGAAGATGAAAAATGATTACATTTACCTCAGCTGGTTAGCTCGGTGCTATATTATGAATAAGAAACCAAGACTAGCCTGGGAACTTTATCTTAAGATGGAAACCTCCGGCGAGTCCTTCAGTCTCTTACAGCTCATTGCTAATGACTGCTACAAG|GAATTGACTTTGACCTCTTCTCAGCCTCCTTGAAGAGCCCCCACTACCCAACAAAAGCATTTTGGATTTTCCAAATTTACATGGAAATGCATAAGTAGGTGTGCTCTACCCCTAGTCCCTAGTGACAAAATTACTTTCTCATCACCTGCTCAGTCTCTGCTGGAAGAGACTGAACTAACTTTCAAATTGGTGATCGCAGCCAATTAGAAGTTTGTGAA 7 1.0 0.620719735416954 0.936022209668043 N Y 3.5371763350831698 3.3059151696105804 3.3059151696105804 10 0.0 0.0 Y 0.0 N N 745 1434 ENSG00000105948 ENSG00000157741 + - 7 7 138876732 138992981 coding upstream TTC26 UBN2 138818490 138915102 + + 0.0 138865944 138908823 + - N - - N SA470 1 0.169565217391304 1.0 1 0 1 N N 0.0 0.169565217391304 7 1.15956573480182 1.37981844420552 1.37981844420552 1.15956573480182 4 - - 0.9453582097063552 HCT116-unstranded 10.0 1037392 CCATCTTGCAGTGTGCCCTGAACCGCCCTGCCTTCTTTGCTGAGAGGCTCTACTATGCTATGAAAGGTGCTGGCACAGATGACTCCACCCTGGTCCGGATTGTGGTCACTCGAAGTGA|GAGAAATATTGAAATCAAAGAGTCGAGAAAGCAAAATGTAAAGGTGGAAACCTATGCACTTAAACCCAACTCTTGGCAAGGTAAAGCATCCGCGGAAACAGCAGGCTCTCGAAGTGAGGAGGCTGCAGCCGGCGCTAGGGCGCAGGCGCAGAAGCTCAGCGTCTCGCTCCCTGCTCCCGGCCCCAGAGGGTTATCGCGAGTCTTGGAATAAACTTGCTCGTGCGATGGCCAAAAAGAC 13 0.7750429587611141 0.5766656972783101 0.312857719276693 Y Y 3.59528445727371 3.05319192200579 3.05319192200579 0 0.0 0.0 Y 0.0 N Y 5644 636 ENSG00000138279 ENSG00000156042 + - 10 10 75173834 75119452 coding utr5p ANXA7 TTC18 75135203 75013517 - - 0.0 75138669 75118768 - + N - - N SA470 1 0.0 1.0 1 0 2 N Y 0.0 0.0 9 0.5894998986981321 1.12717563047775 1.12717563047775 0.5894998986981321 4 - - 0.980377424235642 HCT116-unstranded 10.0 940887 TTATTCCTGAATTTATTAGGAAGCAAAAGGAGGGTAATTTTGATATTGTCTCTGGAACTCGCTACAAAGGAAATGGAGGTGTATATGGCTGGGATTTGAAAAGAAAAATAAT|CAGGACTATCGGACAAAACCTTTCTGCTGCAGCGCTTGTCCATTTTCCTCAAAATTCTTCTCTGCCTACAAAAGTCATTTCCGCAATGTCCATAGTGAAGACTTTGAAAATAGGATTCTCCTTAATTGCCCCTACTGTACCTTCAATGCAGACAAAAAGACTTTGGAAACACACATTAAAATATTTCATGCTCCGAACGCC 7 0.156899772896276 0.702399571093687 0.758518065645046 Y Y 2.97999312784493 3.716171579866991 2.97999312784493 0 0.991099863512284 0.0 Y 0.0 N Y 3835 14378 ENSG00000000419 ENSG00000101126 + - 20 20 49575092 49547958 coding coding DPM1 ADNP 49551404 49505585 - - 0.0 49558568 49511049 - + N - - N SA470 1 0.0 1.0 1 0 4 Y Y 0.0 0.0 14 1.16604375566664 1.0623954218296 1.16604375566664 1.0623954218296 4 - - 0.96861463216283 HCT116-unstranded 10.0 940885 AGGGTAATTTTGATATTGTCTCTGGAACTCGCTACAAAGGAAATGGAGGTGTATATGGCTGGGATTTGAAAAGAAAAATAATCAGCCGTGGGGCCAATTTTTTAACTCAGATCTTGCTGAGACCAGGAGCATCTGATTTAACAGGAAGTTTCA|GAAACTATGTTCCAACTTCCTGTCAACAATCTTGGCAGTTTAAGAAAAGCCCGGAAAACTGTGAAAAAAATACTTAGTGACATTGGGTTGGAATACTGTAAAGAACATATAGAAGATTTTAAACAATTTGAACCTAATGACTTTTATTTGAAAAACACTACATGGGAGGATGTAGGACTGTGGGACCCATCACTTACGAAAAACCAGGACTATCGGACAAAACCTTTCTGCTGCAGC 4 0.609504568875127 0.5023157616672921 0.374142237638004 Y Y 3.61104682422314 3.65591337975064 3.61104682422314 0 0.993480768266386 0.0 Y 0.00255754475703329 N Y 3835 14378 ENSG00000000419 ENSG00000101126 + - 20 20 49575092 49547958 coding utr5p DPM1 ADNP 49551404 49505585 - - 0.0 49557402 49520538 - + N - - N SA470 1 0.0 1.0 1 0 4 N Y 0.0 0.0 8 0.8939668793444209 1.30856021469256 1.30856021469256 0.8939668793444209 4 - - 0.990997065100388 HCT116-unstranded 10.0 379862 GATATGAAAGGTGAGGTCTATCCATTTGGCATCGTTGGGATGGCCAACAAAGGGGATTGCCTGCAGAAAGGGGAGAGCGTCAAGTTCCAATTGTGTGTCCTGGGCCAAAATGCACAAACTATGGCTTACAACATCACACCCCTGCGCAGGGCCACAGTGGAATGTGTGAAAGATCAG|GATTCTTACAGAAAACAAGTGGTTATAGATGGTGAAACCTGTTTGTTGGACATACTGGATACAGCTGGACAAGAAGAGTACAGTGCCATGAGAGACCAATACATGAGGACAGGCGAAGGCTTCCTCTGTGTATTTGCCATCAATAATAGCAAGTCATTTGCGGATATTAACCTCTACAGGGAGCAGATTAAGCGAGTAAAAGACTCGGATGATGT 34 0.890627642459932 0.5910293678922621 0.8421346916964929 Y Y 3.4780843434859 3.59681204058356 3.4780843434859 1 0.994364658357413 0.0 Y 0.0 N Y 56892 18291 ENSG00000009307 ENSG00000213281 + - 1 1 115301297 115259515 coding coding CSDE1 NRAS 115259534 115247090 - - 0.0 115263160 115256599 - + N - - N SA470 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 21 1.15956573480182 1.39277448593515 1.39277448593515 1.15956573480182 4 - - 0.9861912899606672 HCT116-unstranded CGHSA0047 10.0 379860 CTATCCATTTGGCATCGTTGGGATGGCCAACAAAGGGGATTGCCTGCAGAAAGGGGAGAGCGTCAAGTTCCAATTGTGTGTCCTGGGCCAAAATGCACAAACTATGGCTTACAACATCACACCCCTGCGCAGGGCCACAGTGGAATGTGTGAAAGATCAG|GTTCTTGCTGGTGTGAAATGACTGAGTACAAACTGGTGGTGGTTGGAGCAGGTGGTGTTGGGAAAAGCGCACTGACAATCCAGCTAATCCAGAACCACTTTGTAGATGAATATGATCCCACCATAGAGGATTCTTACAGAAAACAAGTGGTTATAGATGGTGAAACCTGTTTGTTGGAC 30 0.822679557059854 0.26895159796948 0.448524143735127 Y Y 3.4780843434859 3.32783191248938 3.32783191248938 1 0.9937683823529408 0.0 Y 0.00294117647058822 N Y 56892 18291 ENSG00000009307 ENSG00000213281 + - 1 1 115301297 115259515 coding utr5p CSDE1 NRAS 115259534 115247090 - - 0.0 115263160 115258798 - + N - - N SA470 2 0.0 1.03703703703704 1 1 2 N Y 0.0 0.0 27 1.05591740096479 1.15308771393701 1.15308771393701 1.05591740096479 4 - - 0.984801219146016 HCT116-unstranded CGHSA0047 10.0 968016 GGCGGGGACGACTCGGACGAGGACTATGAGAAGGTGCCACTGCCCAACTCGGTCTTCGTCAACACCACGGAGTCCTGCGAAGTGGAAAGGTTGTTCAAGGCTACAAGCCCCCGGGGAGAGCCCCAGGATGGACTCTACTGCATCCGGAACTCCTCTACCAAGTCGGGGA|AGGAACCTAGAAAGATTGTACAATGAATGGTGATTCTCGTGCTGCGGTGGTGACCTCACCACCCCCGACCACAGCCCCTCACAAGGAGAGGTACTTCGACCGAGTAGATGAGAACAACCCAGAGTACTTGAGGGAGAGGAACATGGCACCAGACCTTCGCCAGGACTTCAACATGATGGAGCAAAAGAAGAGGGTGTCCATGATTCTGCAAAGCCCT 4 1.0 0.878131276361254 0.389436451314221 Y Y 3.59528445727371 3.6852786881538906 3.59528445727371 0 0.0 0.0 Y 0.0 N Y 3016 19022 ENSG00000087266 ENSG00000087274 + - 4 4 2842825 2931803 coding utr5p SH3BP2 ADD1 2794750 2845584 + + 0.0 2834139 2877623 + - N - - N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 7 1.06887344269442 1.17252177653145 1.17252177653145 1.06887344269442 4 - - 0.990940289148492 HCT116-unstranded 10.0 1097201 CTTTGGAATTGTGACCTGTAACACTCTTACAGAAACACACTGCTTGGAAGGTACCTCCTCATCCTTGGCTCCATGCCAACAACCTC|AGTCAGGTTCATCGGCGCAGCCTCCGCCAGCACAGCCAGGGAAGAGCGGGGCGGGAGCGGCAGTGACCTGGACGCTGACAGAGGCACCAACGCCTGCAACCGATTCAACCGAGCCTCACTCTAGCCTCTGTACAACGGGGAAACCTTTTCTCGCGTTTTTCCGCTTTTTCACCTCAGTCTCGACTCAGCCTGAAGGTGAACAGATCCCAACGCAGCCATATTGACAACCCCAGGAGGCGTTGCAGGAAGTCCCGCCC 15 0.6160325209519489 0.3629902021284721 0.8840458886195619 Y Y 3.63825270713077 3.2807660786729103 3.2807660786729103 0 0.9884058950784208 0.6753650621957811 Y 0.826088426176312 N Y 763 996 ENSG00000186230 ENSG00000186272 - + 19 19 57956853 57933307 coding coding ZNF749 ZNF17 57946697 57922529 + + 0.0 57954659 57922774 - + N - 0.528977267438706 N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 8 0.414593335348137 0.732016357724055 0.732016357724055 0.414593335348137 4 - 3.375 0.958856943678836 HCT116-unstranded 10.0 1101670 GAGACGGGCAGCTAGTGAGCCAGAGGGCGATCCCGCCGCGCAGCATCCGTGGGGACCAGATTGCCTGGGTGGAAGGCCATGAACCAGGCTGTCGAAGCATTGGTGCCCTCATGGCCCATGTGGACGCCGTCATCCGCCACTGCGCAGGGCGGCTGGGCAGCTATGTCATCAACGGGCGCACCAAG|CTCAGGGAGAAATACAGCCCTGTGTTCACTGTGTACATGGGTCCCGGCCAGTGGTGGTTTTATGTGGACACGAAGCAGTGAAGGAAGCCTTGATAGACCAAGCGGATGAGTTCAGTGGCCGTGGAGAACTGGCTTCAATAAAGCAAAACTTCCAAGGTCATGGATCCTGCAGAGAGGGAACCTTACTCTCTTGATTGAGTCTTGAAGGTTGAGGATGGCTTCCTGG 9 0.963469113000102 0.995923209576945 0.853606610012676 N Y 3.4268022922038504 3.54872248456702 3.4268022922038504 0 0.9946077145106272 0.0 Y 0.218118604040934 N N 2500 147 ENSG00000171570 ENSG00000130612 + - 19 19 41314336 41406413 coding utr5p EGLN2 CYP2G1P 41305048 41396731 + + 0.0 41307320 41397896 + - N - - N SA470 2 0.0 1.25 1 2 1 N N 0.0 0.0 8 1.27617011036848 1.39925250679996 1.39925250679996 1.27617011036848 4 - - 0.964443058168923 HCT116-unstranded 10.0 616025 TCAGGAAAGAGTGTTAGCTCAGTTGCGAGCTGCCTTGTACGGTATTCATGACATATTCTTTGTAATGGATGCAGCTGAAAGAATGTCTATTCTACATCATGATCGAGAAGTTCGCAAAGAGAAAATGCTCAGGCAAAT|GGCACTCCAGGAATAGGAACTACAAAGCTGAATTTGCATCATGCCGACTGGAGGCTGTACCATTGGAGTTTGGGGACTATCACCCTCTGAAACCCATAACTGTCACAGAGTCAAAGACAAAGAAAGTGAACCGGAAAGGAAGCACTTCTTCCACGTCCTCCTCCTCCTCCAGCTCCGTGGTGGACCCGCTGAGCAGCGTCCTCGATGGGACTGACCCC 13 0.904012925550928 0.961150910614528 0.452263318562304 Y Y 3.31233066536513 3.59681204058356 3.31233066536513 0 0.0 0.0 Y 0.00280112044817926 N Y 650 3338 ENSG00000103540 ENSG00000103544 + - 16 16 19564730 19718115 coding coding CCP110 C16orf62 19535133 19566562 + + 0.0 19556532 19576173 + - N - - N SA470 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 5 0.72553833685924 0.900444900209235 0.900444900209235 0.72553833685924 4 - - 0.994848257334812 HCT116-unstranded 10.0 693870 AGCAGTTGAGAGAGAACGTGCAGCTACAGAAGAACTCCTTGCTAACAAAATTCAGATGTCTTCCATGGAGTCACAGAATTCTCTTTTAAGACAGGAAAACAGTAGATTTCAAGCCCAGCTAGAATCAGAGAAAAATAGGCTGTGTAAACTGGAGGATGAGAACAAT|AGGCCTGTGGAAATCGAATCAAGGGTTTCTGGAGTGGAGTGATTCCAGCTGCTTTGAGCTGAAGGAAAAGTAGCCTGGCCAGTAAAGCGTCCGTGTGCTGGAGGAGTGCAGCCACCCATCCCGGCGGGCCTTGCAGGACGACCGACACCAGGAAGGCTTTGTGCCAGGCCCAGCAGCCACCCCCA 4 0.3834374251985221 0.578314860916761 0.531972122059432 Y Y 3.23168330567983 3.41423242051993 3.23168330567983 2 0.0 0.0 Y 0.0 N Y 1658 1599 ENSG00000144747 ENSG00000163378 + - 3 3 69101484 69063112 coding utr5p TMF1 EOGT 69068978 69024365 - - 0.0 69078966 69061950 - + N - - N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 7 1.17252177653145 1.0235272966407098 1.17252177653145 1.0235272966407098 4 - - 0.948662664851382 HCT116-unstranded 10.0 1132378 TGAAATTGTGAATACTAAATAAAATCTTCAGTTTAATTTGTAAGAATGTATGTTTGTATTTCTAGGTATAGACTATGTGATACCTAAAACAGGGTTTTACTGTAAGCTGTGTTCACTCTTTTATACAAATGAAGAAGTTGCAAAGAATACTCATTGCAGCAGCCTTCCTCATTATCAGAAATTA|AAGGTTAAAAACGACAACCAACATCAGCCATGAAAGATCCAAGTCGCAGCAGTACTAGCCCAAGCATCATCAATGAAGATGTGATTATTAACGGTCATTCTCATGAAGATGACAATCCATTTGCAGAGTACATGTGGATGGAAAATGAAGAAGAATTCAACAGACAAGTTAGTTTTTTGTACAAACATGTTTTTATAGTCC 91 0.9558662160496 0.566608974193889 0.23974755822751 N Y 3.5027295733137898 3.43937216388778 3.43937216388778 0 0.994579297138995 0.0 Y 0.0 N Y 49517 8531 ENSG00000015479 ENSG00000120727 + - 5 5 138667360 138705406 coding intron MATR3 PAIP2 138609441 138677276 + + 0.0 138661973 138699448 + - N 0.513020939358086 0.172555244260262 N SA470 2 0.0 1.14285714285714 1 1 2 N N 0.0 0.0 7 1.10126354701849 1.06887344269442 1.10126354701849 1.06887344269442 4 446.428571428571 290.428571428571 0.975615325664544 HCT116-unstranded 10.0 794884 GCCCTGCAAGCTAAAGCTTTGGCAGAGACAGGAATAGCTGTTCCTAGCTACTATAACCCAGCCGCTGTTAATCCAATGAAATTTGCTGAACAAGAGAAAAAAAGGAAAATGCTTTGGCAGGGCAAGAAAGAAGGG|CCCAAAATGGCCGCAGAGGTGTATTTTGGCGATCTAGAGCTCTTCGAGCCGTTCGACCACCCAGAGGAGTCGATTCCGAAGCCCGTTCACACTCGCTTCAAGGACGACGACGGCGACGAGGAGGACGAAAATGGGGTCGGCGACGCGGAGCTACGGGAGCGGCTTCGGCAGTGCGAGGA 4 0.11706494666182304 0.578314860916761 0.941138451062146 Y Y 2.6534087386699903 3.62192127872787 2.6534087386699903 0 0.0 0.0 Y 0.0 N N 11665 2296 ENSG00000111011 ENSG00000033030 + - 12 12 123011547 122985518 coding utr5p RSRC2 ZCCHC8 122989240 122957417 - - 0.0 122992765 122985393 - + N - 0.986455795087589 N SA470 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 6 1.29560417296293 0.90692292107405 1.29560417296293 0.90692292107405 4 - 16.5 0.9050780227687648 HCT116-unstranded 10.0 222554 AACGATGACGTACAGGGCTCGGTCGCGCTTTGTGACGTTGGCGTTACTTGCAGATTTTGCAAAGGTCCGGGCTCCGCTGTCGAGGCCTTTGCTGTCGAGGTCTCATTTTGGCTGCTTCGGGTCGCCACGTTGCCTGATGTCCCAGACTCT|CTCTCCGAAGACGGACGTGCTCTGACGGAGGGCTGGAGTGTTCCTGCGGTAGCCAAACCTTCCATTGAACCCATCGATCGGTTTCAGATCAGCATTGTAGTGGTCATGCCCAGTCACCTGCTGGAGAGAATGCCCTTGGGGACAAGGAGAGAGAGGCCTGAGCCTGCATTCAGCCCACCTCTTGGCTTCCCCATTCCC 3 1.0 0.915801788261872 0.729616246532745 N Y 3.53039946453785 3.37080016234644 3.37080016234644 0 0.0 0.0 Y 0.0 N N 3559 131 ENSG00000108296 ENSG00000214556 - + 17 17 36981734 36997708 upstream coding CWC25 C17orf98 36957340 36991341 - - 0.0 36981771 36991466 + - N - 2.1825675469394 N SA470 1 0.0 1.0 1 0 1 N N 0.0 0.0 5 0.965225108857382 1.14013167220738 1.14013167220738 0.965225108857382 4 - 19.8 0.9942315411823952 HCT116-unstranded 10.0 162213 AATGGGTTTTTGAAAGAAAATAAAGATAATGATAAACTTATTGGTGTCCACTGTACCCATGGTTTAAACAGGACTGGCTACCTCATTTGCAGATATTTGATTGATGTAGAAGGCGTGAGGCCAGATGATGCAATTGAATTATTCAATAGGTGCCGGGGACATTGCTTAGAAAGACAAAACTACATTGAAGACCTTCAGAATGGTCCTATCAGAAA|AGTGCACATCCTGTAGGTGGCCGGTGGTTCAAGCTGCCAGAGCACCCGACAGGCCCCTCTGACTCTGATCTAGAGGTGATACGTCCCCCGGGTGCCTCTCTTCTATGAAATCCACAGGGATACAGGACAGGACCAAGGAGTATCAGGGTGCTAGGCTTAGTGGCACCAGGAACACCTGA 3 0.6249116812420389 0.549104469397428 0.8939421973256808 Y Y 3.57489529770476 3.64503892524591 3.57489529770476 3 0.0 0.00253164556962027 Y 0.00253164556962027 N N 730 1408 ENSG00000144048 ENSG00000144034 + - 2 2 74007284 73964527 coding upstream DUSP11 TPRKB 73989311 73956231 - - 0.0 73993955 73967245 - + N - - N SA470 1 1.0 1.0 1 0 1 N Y 0.0 1.0 9 1.30208219382774 0.8810108376147909 1.30208219382774 0.8810108376147909 4 - - 0.958028601343635 HCT116-unstranded 10.0 796238 GAAACGACCGGAGATACTGACAGATGAGAGCCTCAGCAGCTTGGCAGTCTCATGTCCCCTTACCTCACTTGTCTCTAGCCGCAGCTTCCAAACCAGCGCCATTTCAAGGGACATCGACACAGCAGCCAAGTTCATTGGAGCTGGGGCTGCCACAGTTGGGGTGGCTGGTTCTGGGGCTGGGATTGGAACTGTGTTTGGGAGCCTCATCATTGGTTATGCCAG|ATTCTGCAGCCGAACACGTGTGACCTGTGTGGACAGTACTCGCTCAGTCTCCCTCCCCAGCCCTGCCCACAGTAAGCCCGGCCCCTTCTTTTCCCGGAGCCCCCGCCTCTCGGCCGCTTTCCAACTCAGCCCC 6 0.575270368257796 0.6407929201249599 0.488112248632299 Y Y 3.6161681303826296 3.72146071989581 3.6161681303826296 0 0.0 0.00280898876404512 Y 0.00280898876404512 N N 16279 2117 ENSG00000135390 ENSG00000170653 + - 12 12 54071192 54020199 coding upstream ATP5G2 ATF7 54026510 53901640 - - 0.0 54062932 54020361 - + N - - N SA470 3 0.0 2.4 2 5 2 N Y 0.0 0.0 5 0.492329585725913 0.732016357724055 0.732016357724055 0.492329585725913 4 - - 0.90890563921379 HCT116-unstranded 10.0 384061 CACAGCCACGCTCCCACCCGGCTGCCAACGATCCCTCGGCGGCGATGTCGGCCGCCGGTGCCCGAGGCCTGCGGGCCACCTACCACCGGCTCCTCGATAAAGTGGAGCTGATGCTGCCCGAGAAATTGAGGCCGTTGTACAACCATCCAGCAGGTCCCAGAACAGTTTTCTTCTGGGCTCCAATTATGAAATG|GATTGATAACAAACAGCTTCAGGGCTATTTATCTGAGCTTCGCCCAGTGACGATTGTGTTTGTGAACCTGATGTTTGAAGACCAAGACAAAGCAGAAGAGATAGGCCCAGCCATCCAGGATGCCTATATGCACATCACTTCTGTCCTGAAGATCTTCCAAGGCCAAATCAATAA 17 1.0 0.760311471996644 0.3683478212185779 Y Y 3.51832410639388 3.4487190350826604 3.4487190350826604 0 0.994268490754623 0.0 Y 0.002717391304347889 N Y 2101 134 ENSG00000143158 ENSG00000143199 + - 1 1 167906278 167883453 coding coding MPC2 ADCY10 167885967 167778625 - - 0.0 167893735 167852866 - + N - - N SA470 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 8 1.21786792258515 0.997615213181455 1.21786792258515 0.997615213181455 4 - - 0.990940289148492 HCT116-unstranded 10.0 384068 GCTACAAAGCTCAACTCGGGTGAAGACAAAATTGAGGACATTCTGGTTCTGCACTTGGACAGGGGAAAGGATTACTTTTTGTCTGTGTCTGGGAACTACCTGCCCAGCTGTTTTGGGTCTCCCATTCATACACTGTGTTACATGAGAGAGCCAATCTTGGACCTACCACTTGAAACCATTAGTGAGCTGAC|AAGTCATTACGTTTTCATTTCTCACAACTGGGCTGAGCACAACTGAACCATGGGGGAACACAGTCCAGACAACAACATCATCTACTTTGAGGCAGAGGAAGATGAGCTGACCCCCGATGATAAAATGCTCAGGTTTGTGGATAAAAACGGACTGGTGCCTTCCTC 6 1.0 0.240578844426846 0.639677020321449 Y Y 3.6659225983548303 3.5361526128830896 3.5361526128830896 0 0.0 0.0 Y 0.0 N Y 1184 5712 ENSG00000204084 ENSG00000188786 + - 1 1 38412729 38325292 coding utr5p INPP5B MTF1 38326369 38279851 - - 0.0 38338602 38323381 - + N - - N SA470 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 9 0.932835004533309 1.09478552615367 1.09478552615367 0.932835004533309 4 - - 0.9834177673994052 HCT116-unstranded 10.0 384010 GGAACTGCAGGTGTTTTCTGGGACCTGAGAGCATTCCCTGGCCAATCATTAGCAGGAAAACAGGAACTCACTCCTATAACTGAGAGGAAATAAAATTTACCAACAACCAATGAGCCTGGAAGAAGACCCTGAGCCTCAAATGAGAACTGCAGCCCCAGCCAACACTGATTTCAGCCTT|GGTCTCAGTACAGCCACCAAGGACACCTACGACGCCCTTCACATGCAGGCCCTGCCCCCTCGCTAACAGCCAGGGGATTTCACCACTCAAAGGCCAGACCTGCAGACGCCCAGATTATGAGACACAGGATGAAGCATTTACAACCCGGTTCACTCTTCTCAGCCACT 1 0.573058004442469 0.943671024058352 0.933076575831644 N Y 3.38912318237562 3.57592836747465 3.38912318237562 1 0.0 0.0 Y 0.0 N N 8275 97 ENSG00000143162 ENSG00000198821 + - 1 1 167523004 167487847 intron coding CREG1 CD247 167498914 167399877 - - 0.0 167498934 167400983 - + N - - N SA470 1 1.0 1.0 1 0 1 N N 1.0 0.0 6 0.900444900209235 1.01057125491108 1.01057125491108 0.900444900209235 4 - - 0.97166366208961 HCT116-unstranded 10.0 222928 AATTCCCAAATCTCCAGGGACCTCCAGCTCCATGAATGGTATCTCCATCTCTTCAGGTGACTGAGTTGGAAATCTTGACTTCACTCCACCAATGACCTGAGTCATTCTTAGAAAGTCTGAAGAAGGAGCATGCAGTTCTGAGGGTGGCAGCAGGTCCAGGAATTGGAATGTGACCACAGGGGAATTCCTCATAAAGGGCTGAACTTGCCTGAATGAGTTTCCTCT|CTCCAGAAAGCTCCCCAGCTCCCCGGCTTCTTGCGGGCCCTGTCTTCGCTTGCGCTCAGCCATCAGCACAGCCACAGCCACTGTGAGCAGCACGGTGCCTGTGATGCCCAGCACAGTGGCAGTCTCAGCCAGGCAAAGCTGGGCCTCCACACCACTCAGCACTGCCCCTGACAGCCTTTCGGGCCCAGCGC 12 1.0 0.742072781752111 0.931712808781999 N Y 3.5000010863647097 3.08255723040904 3.08255723040904 0 0.0 0.0 Y 0.0 N Y 155 3008 ENSG00000131096 ENSG00000091947 - + 17 17 42081837 42101314 utr5p intron PYY TMEM101 42030106 42088556 - - 0.0 42043900 42100940 + - N - 7.16850905653805 N SA470 2 0.0 1.8333333333333304 1 5 1 N N 0.0 0.0 6 1.19843385999071 1.10126354701849 1.19843385999071 1.10126354701849 4 - 0.833333333333333 0.923593174277328 HCT116-unstranded 10.0 540581 ATTTTACATCACCTTTCAGAACGCAACAGGGTCCGGGACAGGGATGTCTACCTGGTAATAGAGGACTTGAAGCAGAAAGCAAGTGAATACGAGTCAGAAGGAGCAACTTTCAGCCAGAGGCATGGATGCTTCTCTGTCTCATCAGTCCTTAGTAGCACTATCAGAGAAACTGGCAAGATTAAAGCAACAGACTATACCTTTGAAGAAAAAATTGGAGTCCTATTTAGACTTAATGCCGAATCCGTCTCTTGCTCAAGTGAAAATTGAAGAAGCAAAGCGAGAACTAG|TTGCTTTCCTGTTGCATCTTTGATATCATTTCCTAGACTCTACTCCATGATTTAACTTGAAATTCTGAAATGAAGATGGAGGAGGCAGTGGGAAAAGTTGAAGAACTCATTGAGTCCGAAGCCCCACCAAAAGCATCTGAACAAGAGACAGCCAAGGA 5 2.67010320993016e-05 0.43053283483436505 0.689744792048096 Y Y 3.34677742713451 3.31911688348027 3.31911688348027 2 0.0 0.0 Y 0.0 N Y 1447 7509 ENSG00000152240 ENSG00000152242 + - 18 18 43708299 43846949 coding utr5p HAUS1 C18orf25 43684298 43753519 + + 0.0 43705757 43795777 + - N - - N SA470 3 0.0 2.6 1 4 2 N Y 0.0 0.0 5 0.8810108376147909 0.6218900030222061 0.8810108376147909 0.6218900030222061 4 - - 0.910445367459723 HCT116-unstranded 10.0 951372 AGAGTGCTTGCTACTGGCTGAAAGGTGTCCGCTACTCTGATATCGGCACTCTGGCCTGGATGATCACTCTGAGCGACGGCCTCCATAATTTCATCGATGGCCTGGCCATCGGTGCTTCCTTCACTGTGTCAGTTTTCCAAGGCATCAGCACCTCGGTGGCCATCCTCTGTGAGGAGTTCCCACATGAGCT|AGCTGTCCCCTTTCCTCCAACCCAACGGCTTACTTTCAAGGAAGTATTTGAGAATGGGAAACCTAAAGTTGATGTTTTAAAAAACCATTTGGTAAAGGAAGGACGACTGGAAGAGGAAGTAGCCTTAAAGATAATCAATGATGGGGCTGCCATCCTGAGGCAAGAGAAGAC 9 0.994998698965602 0.490232257638359 0.11856809384107 N Y 3.61720120015252 3.35257042827311 3.35257042827311 0 0.0 0.0 Y 0.0 N Y 16147 514 ENSG00000104635 ENSG00000120910 + - 8 8 22291642 22398652 coding coding SLC39A14 PPP3CC 22224762 22298332 + + 0.0 22273793 22332467 + - N - - N SA470 1 0.0 1.0 1 0 1 Y N 0.0 0.0 10 1.16604375566664 1.12069760961293 1.16604375566664 1.12069760961293 4 - - 0.9775239364318872 HCT116-unstranded 10.0 1102765 AGTAGGGACAGAGGGTCAGCAGGTCTTGTTGGGTACAGCCACTGAGGCAGCAGTAGCGTGCAGGGTTGGTGGCAGCTGCACGGTGGTGGCGGTGATGGTGAGAGGTCTGGGGCAGGGGCTGCAGGCCAGGTCCCAGCGTGAGATTACTGTCGGCCACCAGCCCATGGAGCAGATGTCGTCTCTCCAGCCACTGTAGCAACTCACCT|CAGCAGGGCAGGCAGGAGGCGCCGGCAGCCTCTGGCCCTCCTCCAGCAGTTCCAAGAGGCGGCAGAGGGCGGGGACATCCCGCTCACATCCCATCATCCGCAGGAACTCCTGGAGCCAAGGAGGAGCGCATGTGGTGGGGGAGGAGCCTCCGTGGGTGGAGGGGGAGGGGCCACCCGTGGT 10 1.0 0.6598122713877671 0.662053516054313 Y Y 3.5969798744529102 2.95951068232014 2.95951068232014 0 0.9944893774562852 0.0 Y 0.0 N Y 85 188 ENSG00000248099 ENSG00000105639 - + 19 19 17932383 17958880 intron coding INSL3 JAK3 17927324 17935589 - - 0.0 17927868 17940917 + - N 7.61253219236413 1.03093893238565 N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 13 1.11421958874812 1.14013167220738 1.14013167220738 1.11421958874812 4 0.461538461538462 1 0.974640301138982 HCT116-unstranded 10.0 567794 TGGTCTCCTTTGTGTAAAATAAACAACAGAACTTTATGCTTAATTTAGATCCTTTCTGCAAAGTGCACTGAATTGCTGAAAGTTGACTTGAGTCTTGTCCTATTCCTCAGTTCATTTGGCCATTTTGGATTTTGGAGAGCCTGAAACTTTGATAT|GTTATAAACAACTTGTGAAATGAGTGATTTGGAAGATGATGAGACACCCCAGCTTTCTGCCCATGCCTTAGCAGCTCTCCAGGAATTTTATGCTGAGCAAAAGCAACAAATTGAGCCAGGCGAGGATGATAAATATAACATTGGAATAATAGAAGAGAATTGGAATCGCATGTGTGAGTGC 6 0.972348170136032 0.6407929201249599 0.661732067141942 Y Y 3.21808036422602 3.18296190747752 3.18296190747752 0 0.0 0.0 Y 0.002967359050445211 N N 6461 457 ENSG00000132953 ENSG00000150456 + - 13 13 21477187 21348097 utr3p utr5p XPO4 N6AMT2 21351469 21296543 - - 0.0 21357728 21331756 - + N - - N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 5 0.693148232535167 1.00409323404627 1.00409323404627 0.693148232535167 4 - - 0.992259841123585 HCT116-unstranded 10.0 166113 CCTAATACCGCGCCTGCGCACCGCGTCTCTTCCTTTCTGGGCTCGGACCTAGGTCGCGGCGACATGGCCAAACGTACCAAGAAAGTCGGGATCGTCGGTAAATACGGGACCCGCTATGGGGCCTCCCTCCGGAAAATGGTGAAGAAAATTGAAATCAGCCAGCACGCCAAGTACACTTGCTCTTTCTGTGGCAAAACCAAGATGAAGAGACGAGCTGTGGGGATCTGGCACTGTGGTTCCTGCATGAAGACAGTGGCTGGCGGTGCCTGGACGTACAA|ACAATGGCGATGACCACTCAGAAGGAGGCCTGGTGGAGAACCACGTGGACAGCACCATGAACATGTTGGGCGGGGGAGGCAGTGCTGGCCGGAAGCCCCTCAAGTCGGGTATGAAGGAGCTGGCCGTGTTCCGGGAGAAGGTCACTGAGC 24 0.00715659181353107 0.549264189718377 0.7491704903179259 N Y 3.66273010308932 3.60888739872753 3.60888739872753 1 0.0 0.0 Y 0.0 N Y 120117 19211 ENSG00000197756 ENSG00000115457 + - 2 2 217443903 217529159 coding coding RPL37A IGFBP2 217362912 217497551 + + 0.0 217364754 217525280 + - N - - N SA470 2 0.0 1.16666666666667 1 1 2 N N 0.0 0.0 6 0.4081153144833221 0.7708844829129431 0.7708844829129431 0.4081153144833221 4 - - 0.938740952175335 HCT116-unstranded 10.0 381841 CATCTCACCAGAGCATGTCATACAAGCACTAGAAAGTTTGGGATTTGGCTCTTACATCAGTGAAGTAAAAGAAGTCTTGCAAGAGTGTAAAACAGTAGCATTAAAAAGAAGAAAGGCCAGTTCTCGTTTGGAAAACCTTGGCATTCCTGAAGAAGAGTTATTGAGACAGCAACAAGAATTATTTGCAAAAG|ATCAGTTCGACAGCTTAGACAAGCATACACAATGGGGAATTGACTTCTTGGAAAGATATGCCAAATTTGTTAAAGAGAGGATAGAAATTGAACAGAACTATGCGAAACAATTGAGGTAAGTTAATTTTTTTTTCAGT 13 0.604174230572348 0.492932954790307 0.22854660794833 N Y 3.1839949772474103 3.63655728995158 3.1839949772474103 0 0.0 0.0 Y 0.0 N Y 10342 1500 ENSG00000117505 ENSG00000137942 + - 1 1 93828149 94020218 coding coding DR1 FNBP1L 93811445 93913658 + + 0.0 93819628 93965025 + - N - 0.197806148627702 N SA470 1 0.0 1.0 1 0 1 Y N 0.0 0.0 17 1.12717563047775 0.7125822951296109 1.12717563047775 0.7125822951296109 4 - 1.47058823529412 0.946665691957924 HCT116-unstranded 10.0 1097159 CGATGCTCAGACAGGGGGTAAGTGATGCTGAAACAAGGCCCGGGGTCTTGGACAGGCTTGTCGCATGGGATGCCTGGGACTGACTGTGCTGTGCACTCTCAGCCGACAGGGAGGTTCAGAGGATCCTGCTGGAGCTG|CTCAAGAGGTGAAACAAACAAAATCCTGCCTGGCGGAGCTATCGCCCAGTCCCGCACGCACTCGGCCTCAGGGTCACACTCGGCGGTCCCACGCTCAAGTGGCCCGGCCAGTGGCCCAGAGGCGTCTGTTCTCCTCCTCAGCTTCCTGCGTGGGTTCCTGGTAAGTGAGTCGAACCCGCCGGATGCGCGCGCGCC 3 1.0 0.29579660691438897 0.6247805192042939 N Y 3.5052902263935297 3.4906542151698305 3.4906542151698305 0 0.0 0.0 Y 0.0 N N 16855 170 ENSG00000013275 ENSG00000187187 + - 19 19 40487351 40523514 coding upstream PSMC4 ZNF546 40477073 40502943 + + 0.0 40486011 40502708 + - N 1.54205818818888 - N SA470 1 0.0 1.0 1 0 1 N N 0.0 0.0 12 0.829186670696274 0.608933961292576 0.829186670696274 0.608933961292576 4 252.916666666667 - 0.9903879668904072 HCT116-unstranded 10.0 673322 GATTGAACACCTGCCAGGAAGTTAATGGTGTGGATCACGCTGCCCCAGAAACTTATCCCCAAGACATTTTCTCTAATGGGCTTAAGCCAGCTGGGGGACTCATTCATCTGGATGCCCTTGATGGGAAATCAAATAGCCTGGATGATTCAACTGAAGAAGTTCAGTCTATGGATGTGAG|GTCTTTATCACCAGTACCTAGAAATGCTGAACACTACAAGCAAAGACATTCACACGGGCATTATGGCTGTGAATATAGGAAGGATCCAAAAAGACCCGTCGCGTGGAGAATGGACAGTGAGAAACATGGACAGAGTAAACCAAGGATTCCCTCTCGTGGAAATATATATTACCAGTCTT 4 0.409661457821432 0.7445434758405429 0.78879744097589 N Y 3.50888394924316 3.5497555543369104 3.50888394924316 1 0.0 0.0 Y 0.0 N Y 2111 594 ENSG00000184368 ENSG00000173681 + - X X 20135035 19988416 coding coding MAP7D2 CXorf23 20024831 19930978 - - 0.0 20030467 19984767 - + N - - N SA470 1 0.0 1.0 1 0 1 Y N 0.0 0.0 7 1.13365365134256 1.29560417296293 1.29560417296293 1.13365365134256 4 - - 0.977186549662736 HCT116-unstranded 10.0 733051 AGTGGCCGCCCGGGCGGCGGGATCCACTGTCCGGCAGAGGAAAAATGCCAGCTGTGGGACAAGGAGTGCAGGCCGCACAACCTCGGCAGGCACCGGGGGGATGTGGCGATTCTACACAGAAGATTCACCTGGGCTCAAAGT|GAATTCTACTTCTTAGAATTTAACAAAAATAAATAAGTGGACTTCTGCTTCTGGCCATGGTTGAGTAGCCTATAGCAGCCTAATGCTCCTGCTAAGAACTAGAAACACTGAACAAAATACAAAAGAAAAGTTGTGTGTATTCACCCAATGGAATAATATACAGCAATGAAAA 10 0.7157342613616501 0.3736199892540871 0.345253304696092 N Y 3.77001428422878 3.20443756997885 3.20443756997885 2 0.0 0.0 Y 0.0 N N 6439 949 ENSG00000106803 ENSG00000259197 + - 9 9 101992897 102068893 coding upstream SEC61B KRT8P11 101984346 102067394 + + 0.0 101990282 102067014 + - N - - N SA470 2 1.0 1.4 1 4 2 N N 0.0 1.0 10 0.7579284411833129 0.8615767750203471 0.8615767750203471 0.7579284411833129 4 - - 0.90422486500212 HCT116-unstranded 10.0 860587 GCGGCAGGCGCGGCTGTGCGGCAGCGGAAGTCCTTTGTTGCAGCACAGTCCCTGGCAGAGCCAGAGCCTCTCCGCGCAGCCCAGCCCGAGCGCCGAGCGCCGCGCGCCGCCGCCACTGCAGCTCGCGGCCCCTTCGCCTTCGCCCGCCTTTCCCGCGGCTGATTTGCCTTAAACTCCCTAAAATCTCCGCAGCTCTGGTTCCTGTTGCGGCC|GTCAGGATGTCTGCCCGTGGCCCGGCTATCGGCATCGACCTGGGCACCACCTATTCGTGCGTCGGGGTCTTCCAACATGGCAAGGTGGAGATCATCGCCAACGACCAGGGCAATCGCACCACCCCCAGCTACGTGGCCTTCACGGACACCGAGCGCCTCATCGGCGACGCCGCCAAGAACCAGGTGGCCATGAACCCCACCAACACCATCTTCGACGCC 31 0.991850850274134 0.903205633959174 0.761950640958353 Y Y 3.53039946453785 3.55231620741665 3.53039946453785 1 0.99529393780573 0.0 Y 0.0 N Y 2036 969 ENSG00000126804 ENSG00000126803 + - 14 14 65000408 65009955 utr5p utr5p ZBTB1 HSPA2 64970430 65002623 + + 0.0 64971664 65007563 + - N - 0.127448464025418 N SA470 4 0.0 1.9 1 8 1 N Y 0.0 0.0 20 1.36686240247589 1.41868656939441 1.41868656939441 1.36686240247589 4 - 1.55 0.928414071495134 HCT116-unstranded 10.0 382088 GCTACAGTTACACCAGCCTGCCATACTATACAGGGGTCCCGGGCCTCCCCAGCACCTTCCAGTATGGGCCTGCTGTGTTCCCTGTGGCTCCTACCTCTTCCAAGCAGCATGGTGTGAATGTCAGTGTGAATGCATCGGCCACCCCTTTCCAACAGCCGAGTGGATATGGGTCTCATGGATACAACACTG|AACTTCCAGGTCCTGAGTCAGAGACACCTGGTGAGAGACTACGGGAGGGACAGACACTTCGGGACTCAATGCTTAAGTATCCAGATAGTCACCAGCCCAGGATCTTTGGGGGGGTCTTGGAGAGTGATGCAAGAAGTGAATCCCCCCAACCAGCACCA 2 0.7536737705517329 0.711738352204484 0.0903538594268205 Y Y 3.6852786881538906 3.41888971836299 3.41888971836299 0 0.993689073184926 0.0 Y 0.0 N Y 17323 8767 ENSG00000143569 ENSG00000143575 + - 1 1 154243986 154248351 coding coding UBAP2L HAX1 154192655 154244987 + + 0.0 154234173 154246250 + - N - - N SA470 2 0.0 1.8 1 4 2 Y Y 0.0 0.0 5 0.9198789628036792 0.8097526081018299 0.9198789628036792 0.8097526081018299 4 - - 0.906552261565167 HCT116-unstranded 10.0 1097077 TTGATGCAGCTGGGGGCCACCGGGCCTGGCGTGGGGCAGGGTGAGGCAGGGCAGACAGCAAGAGCTCTTCTCGTGCCCTGGGGGTTGCTTGCTGGTCCCCAAGTCCTCTGCGGTCCCTAAGGGCTTGGGAAGGGACCCTTCAGGGTGG|CTTTTCTGTGGGTCGAATGTCTCAGGCTTAAGGTCTGCTATAAGGCTGCAATCAGCCTGTCAGCCAGGGGTGCAGTTTCATCTGAAGGCTGAATGGTGGGAGGACTGCTTCCAAACTCATTCAGGCAGCTGTTGGGGAGATGCAGTTGCTTGTGGGAACTGGACTGAGGGCCTCTGTCCTCAGTTTTCTTGACA 7 1.0 0.543467530809796 0.805210996151914 Y Y 3.34984194132402 3.45976132345673 3.34984194132402 0 0.993262942242534 0.0 Y 0.0 N N 2500 680 ENSG00000171570 ENSG00000167578 - + 19 19 41314336 41302847 utr5p upstream EGLN2 RAB4B 41305048 41284171 + + 0.0 41306244 41277830 - + N - - N SA470 1 0.927835051546392 1.0 1 0 1 N Y 0.0 0.927835051546392 7 0.984659171451826 1.08830750528886 1.08830750528886 0.984659171451826 4 - - 0.980255203337576 HCT116-unstranded CGHSA0537 10.0 1137053 TGCCAGAGAACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGGCATGGCCCGTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAG|AGAGCGATGATTCTGACATTTGGGATGATACAGCACTGATAAAAGCATATGATAAAGCTGTGGCTTCATTTAAGCATGCTCTAAAGAATGGTGACATTTGTGAAACTTCGGGTAAACCAAAAACCACACCTAAAAGAAAACCTGCTAAGAAGAATAAAAGCCAAAAGAAGAATACTGC 8 0.8550752320988421 0.7356441707266271 0.674690410089539 Y Y 3.3116284651624706 3.29549537585246 3.29549537585246 1 0.9942360746190227 0.0 Y 0.0 N Y 740 12067 ENSG00000172058 ENSG00000172062 + - 5 5 70214357 70249769 coding coding SERF1A SMN1 70196492 70220768 + + 0.0 70197760 70234666 + - N - - N SA470 4 0.0 4.0 4 6 1 N Y 0.0 0.0 6 1.07535146355923 1.08182948442405 1.08182948442405 1.07535146355923 4 - - 0.922518911032461 HCT116-unstranded 10.0 1137041 GAGAATAAGAAGATAGAATCATAGTGTCTGCTAAATAAGACATATAAGAACTCTGAAGTTGGAATAGATTTGACTGTATTAAATGTTGGCGAGAGACTCTCTTTGATACATTAAAAAAACTGTTTGCAGAAGCAGTTCTGTGGAAGAGACTGGAATAATTATGGCCGGAAAACAAGTACCCGTTTTAA|ATGCGAAAGCCATGGAGTTGAGCTGCAGCGAAGCACCTCTTTACGGGCAGATGATGATCTATGCGAAGTTTGACAAAAATGTGTATCTTCCTGAAGATGCTGAGTTTTACTTTACTTATGACGGATCTCATCAGCGACATGTCATGATTGCAGAGCGCATCGAGGATAACGTTCTCCAGTCCAGCGTCCCAGGCCATGGGCTTCAGGAGACGGTG 11 0.8859375571825809 0.6314163077926039 0.896260687337596 Y Y 3.5319270478477 3.59528445727371 3.5319270478477 0 0.0 0.0 Y 0.002475247524752589 N N 719 947 ENSG00000164338 ENSG00000214944 + - 5 5 72877794 73237818 utr3p utr5p UTP15 ARHGEF28 72861268 72921983 + + 0.0 72876083 72980666 + - N - - N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 8 1.23082396431478 1.30208219382774 1.30208219382774 1.23082396431478 4 - - 0.981959494271754 HCT116-unstranded 10.0 914412 AGCTCAAAGCGGAAAAGAAAGGAAATCACTACATCCTGAATGGCAACAAGTTCTGGATCACTAATGGCCCTGATGCTGACGTCCTGATTGTCTATGCCAAGACAGATCTGGCTGCTGTGCCAGCTTCTCGGGGCATCACAGCCTTCATTGTGGAGAA|GGTTGGAAGTACTCCATGACACACACTCGGAGAAAGTCCCTTCCCATGCTGAGTTCGGGCCTCACTGGCCGCCGAGAGCCCCTGCAGATGGAAGACAGCAACATGGAGCAGGGGGTTGAGGGTGTGGAGCCAGGCATGCCCGAGAGCCCAGGTCACCTCACAGGGCGCCGCAAGAATT 2 0.7263011485682601 0.4598797487508289 0.525412912692819 Y Y 3.67849247003875 3.6136074773028906 3.6136074773028906 2 0.0 0.0 Y 0.0 N Y 4901 6682 ENSG00000128928 ENSG00000140320 + - 15 15 40728146 40760441 coding utr5p IVD BAHD1 40697686 40731920 + + 0.0 40703890 40750650 + - N - - N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 5 0.680192190805537 0.913400941938865 0.913400941938865 0.680192190805537 4 - - 0.978306722328782 HCT116-unstranded 10.0 5434 GTGGGAGGAGGCACCGGCCGCGCGGCGGGAGGAGGTGCCGGCCGAGCACCGCAGACAGCGCCGGGAAGATGAGCACGGAAGGTGGTGGCCGTCGCTGCCAGGCACAAGTGTCCCGCCGCATCTCCTTCAGCGCGAGCCACCGATTGTA|CAGGTCTCAGTGCTGTGTGTGTAATGGTTACCGTGAGAGCTTCCCTGCAATCCGAATTTGTGTGTCTCATTCTCAGTGACACCAGTGATGCTGTTAAACAAGGACAATCCGGTTCATGGATTGTGACAACGCACGCTGACATCAAGCAGACCCTGCCGTCAGGTACAGAGGGCACCACAGTGACCAGGAACTGCTGTCCTTTCATACCAGGTTTTAGGAGGCTTTACCAGAAGGAATGGAAAATGCTGGTGGGCAGTAAGATTGAAACAGC 2 0.173597200977007 0.537978026125945 0.716907133644677 Y Y 3.57080706131517 3.6020308225955 3.57080706131517 0 0.0 0.0 Y 0.0 N Y 1284 107 ENSG00000150787 ENSG00000250303 + - 11 11 112140678 112233257 coding intron PTS RP11-356J5.12 112097088 112141472 + + 0.0 112097249 112161970 + - N - 0.50316148017763 N SA470 1 0.0 1.0 1 0 3 N Y 0.0 0.0 10 0.932835004533309 1.502900840637 1.502900840637 0.932835004533309 4 - 0.6 0.990039928824597 HCT116-unstranded 10.0 6773 GGGAGGAGGCACCGGCCGCGCGGCGGGAGGAGGTGCCGGCCGAGCACCGCAGACAGCGCCGGGAAGATGAGCACGGAAGGTGGTGGCCGTCGCTGCCAGGCACAAGTGTCCCGCCGCATCTCCTTCAGCGCGAGCCACCGATTGTACAG|ACCCAATTTATCTTCAGGCTGGAAAAAGAAAAGGAAGGCCTGATGAAAACCGTGTATTTGGCTTTGTTTACATTAATGAAGTGATTGGACAGAAAAAGTCACAATGACTTTTTTCTTTTGTGAAAAAAATTATTGGGAATGGAATTTTGAAGTCAGGGAGACTGAAAGAGGACTCACCTATGTCTATCTGGAAGATGTATCCAAAAC 12 1.0 0.20757836713199893 0.26333091836889105 Y Y 3.5514509715161 3.31894904961092 3.31894904961092 10 0.0 0.0 Y 0.0 N N 1284 107 ENSG00000150787 ENSG00000250303 + - 11 11 112140678 112233257 coding downstream PTS RP11-356J5.12 112097088 112141472 + + 0.0 112097249 112246269 + - N 2.58346178436172 - N SA470 1 0.0 1.0 1 0 3 N Y 0.0 0.0 16 0.932835004533309 1.27617011036848 1.27617011036848 0.932835004533309 4 21.5625 - 0.912154000123904 HCT116-unstranded 10.0 671799 AACTGTTAGATTCGTATTTTACATGGAGAAGTGAACAAAGTGAAACTGGATCAGAAAAGATTGGAACAAGAATTGGATTTTATCCTGTCACAGCAGCAGGAACTAGAATTTCTGTTGACTTATTTAGAGGAGTCTACGCGTGACCAGAGTGGACTTCATTATCTGCAGGATGCAGATGAGGAGCATGTGGAGATCTCCACCAGATCTGCAGAATTCTGAATGCCCATATGGACTCCCTGCAGTGGATTGATCGGAATTCAGG|GTAAACAGCTGTGTGAAGAGTGATGAGCATGTCCTGGAGGAGCTGGAAACAGAAGGGGAGAGGCAGCTGAAAAGCCTCCTTCAGCATCAACTTGATACTTCTGTCTCCATTGAGGAATGTATGTCTAAGAAAGAGAGCTTTGCTCCTGGTACTA 6 0.238639741346722 0.9887170788428812 0.973626057318762 Y Y 3.6523196569010095 3.44525329330902 3.44525329330902 0 0.0 0.0 Y 0.0 N Y 624 942 ENSG00000198088 ENSG00000089682 + - X X 106449670 106362057 coding coding NUP62CL RBM41 106366657 106307650 - - 0.0 106390973 106359996 - + N - - N SA470 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 9 1.18547781826108 0.90692292107405 1.18547781826108 0.90692292107405 4 - - 0.977837060564704 HCT116-unstranded 10.0 382188 GGCGGCGCTGCGCCCCTCTGCCCGGCCCCACTCCGGGCCTCAGGCCCCCGGACGCCGAGCCGCCGCCGCCGTTTCAGACGCAGACCCCACCGCAGAGTCTGCAGCAGCCCGCCCCGCCCGGCAGCGAGCGGCGCCTTCCAACTCCG|GCCATGCCTTTCTTGGACATCCAGAAAAGGTTCGGCCTTAACATAGATCGATGGTTGACAATCCAGAGTGGTGAACAGCCCTACAAGATGGCTGGTCGATGCCATGCTTTTGAAAAAGAATGGATAGAATGTGCACATGGAATCGGTTATACTCGGGCAGAGAAAGAGTGCAAGATAGAATATGATGATTTCGTAGAGTGTTTGCT 15 1.0 0.9183227627595 0.840712980853605 Y Y 2.99926951205729 3.73808832274579 2.99926951205729 0 0.0 0.0 Y 0.0 N Y 2179 20965 ENSG00000174574 ENSG00000168653 + - 1 1 39471731 39500308 coding utr5p AKIRIN1 NDUFS5 39456895 39491990 + + 0.0 39457272 39494395 + - N - - N SA470 2 0.0 1.5 1 7 1 Y Y 0.0 0.0 14 0.9781811505870108 1.25673604777404 1.25673604777404 0.9781811505870108 4 - - 0.911112484115722 HCT116-unstranded 10.0 223111 TGCTGGGCTTCTCCATGGCCCTGCTGGGCTGGGTGGGTCTGGTGGCCTGCACCGCCATCCCGCAGTGGCAGATGAGCTCCTATGCGGGTGACAACATCATCACGGCCCAGGCCATGTACAAGGGGCTGTGGATGGACTGCGTCACGCAGAGCACGGGGATGATGAGCTGCAAAATGTACGACTCGGTGCTCGCCCTGTCCG|GTGAGCCAGTGGTACGAGCTGGTGGTGTTTACAGCAAGCATGGAGATCTATGGCTCTGCTGTGGCAGATAAACTGGACAATAGCAGAAGCATTCTTAAGAGGAGATATTACAGACAGCACTGCACTTTGGAGTTG 8 1.0 0.7784358446891841 0.61257822543966 Y Y 3.60103760561896 3.47080361183081 3.47080361183081 1 0.9926145730300028 0.0 Y 0.0 N Y 14707 16579 ENSG00000181885 ENSG00000175826 + - 17 17 7167302 7155810 coding coding CLDN7 CTDNEP1 7163222 7146910 - - 0.0 7165140 7149689 - + N - - N SA470 3 0.0 2.15384615384615 1 12 1 N Y 0.0 0.0 13 1.00409323404627 0.7579284411833129 1.00409323404627 0.7579284411833129 4 - - 0.9149687546428692 HCT116-unstranded 10.0 6690 CACTCAAGCCTTTCTACATGAGGGATAATGAAGATGGCCCTCAGCACACGGTTGCTGCTGTTGATCTTCTGGTTCCTGGAGTTGGGGAACTCTTTGGAGGAGGCCTCAGAGAAGAACGATACCATTTCTTAGAGGAGCGCTTAGCCAGATCGGGACTTACAGAAGTCTACCAATG|GCCTGGAAGAAACGCTGGTTTATCCTGCGGAGTGGCCGGATGAGCGGTGACCCAGATGTTCTGGAATACTACAAGAACGATCACTCCAAGAAGCCTCTGCGGATCATCAACCTGAACTTCTGTGAGCAGGTAGATGCAGGCCTGACCTTTAACAAGAAGGAGCTGCAGGATAGTTTTGTGTTTGACATCAAGACCAGTGAACGCAC 7 0.6396892623839039 0.7117124878505379 0.909372517856365 Y Y 3.81298253408584 3.5816815158199 3.5816815158199 0 0.994300673148841 0.0 Y 0.0 N N 1787 509 ENSG00000137513 ENSG00000033327 + - 11 11 78285919 78129394 coding coding NARS2 GAB2 78147007 77926343 - - 0.0 78152137 77991947 - + N - - N SA470 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 9 1.15956573480182 1.12069760961293 1.15956573480182 1.12069760961293 4 - - 0.9465904814261008 HCT116-unstranded 10.0 375732 ACGTGGGAGCGAGTACGTTCTCAGGTGGACCATGTCATCTGGCCAGATGGCAAACGAGTTGTCCTCCTGGCAGAGGGTCGTCTACTCAATTTGAGCTGCTCCACAGTTCCCACCTTTGTTCTGTCCATCACAGCCACAACACAGGCTTTGGCACTGATAGAACTCTATAATGCACCCGAGGGGCGATACAAGCAGGATGTGTACTTGCTTCCTAAGAAAATGG|GAGACATTTATTAAATGTTTGTTGAATGAATGAATGACAAGCACTTGTCACAACGGTAACTCTGTGAAGACTAGGATCCTATCCATTTTGTTCATTACAAAATTCCGCCTAAGCCTTGAACAAGGCTATGAGTTATAAGTGCAAAGCGATTTAGAGGAAGGA 3 1.0 0.488261303887701 0.0744402195203642 Y Y 3.82232940528072 2.97783370234932 2.97783370234932 0 0.0 0.0 Y 0.0 N N 8937 948 ENSG00000168710 ENSG00000143093 + - 1 1 110566357 110597263 coding intron AHCYL1 FAM40A 110527308 110574199 + + 0.0 110562248 110576828 + - N - 0.0340472939466194 N SA470 1 0.138888888888889 1.0 1 0 1 N Y 0.0 0.138888888888889 8 1.21786792258515 0.932835004533309 1.21786792258515 0.932835004533309 4 - 0 0.960685333894813 HCT116-unstranded 10.0 383513 GTGGAGGCCCTGCACCAGAAAAATATCGTGCACAGAGACCTGAAGCTGGGGAACATGGTGCTCAACAAGAGGACACATCGGATAACCATCACCAACTTCTGCCTCGGGAAGCATCTGGTGAGCGAGGGGGACCTGCTGAAGGACCAGAGAGGGAGCCCTGCCTACATCAGTCCCGACGTGCTCAGCG|CCAACCCCGAGAGCTTCGGCCTCTACTTCGTGCTGGGCGTCTGCTTCGGCCTGCTGCTCACCCTCTGCCTGCTCGTCATCAGCATCTCGTGGGCGCCCCGCCCGCGGCCCCGGGGCCCGGCTCAGCGCCGGGACCCCCGCAGCAGCACCCTGGAGCCCGAGGACGACGACGAGG 1 0.5802248493452901 0.654519026102167 0.765888495539602 Y Y 3.4906542151698305 3.62039369541802 3.4906542151698305 10 0.0 0.0 Y 0.0084936813361276 N Y 4127 709 ENSG00000196182 ENSG00000142694 + - 1 1 36851497 36789755 coding coding STK40 FAM176B 36805225 36787632 - - 0.0 36814301 36788326 - + N - 7.02674177674178 N SA470 1 0.31 1.0 1 0 1 Y Y 0.0 0.31 5 0.8745328167499771 0.647802086481464 0.8745328167499771 0.647802086481464 4 - 21.4 0.9593098136580992 HCT116-unstranded 10.0 167461 GTATTTCCTACTTGGCTGGCGCCCAATCTGATAACTTTTTCTGGCTTTCTGCTGGTCGTATTCAATTTTCTGCTAATGGCATACTTTGATCCTGACTTTTATGCCTCAGCACCAGGTCACAAGCACGTGCCTGACTGGGTTTGGATTGTAGTGGGCATCCTCAACTTCGTAGCCTACACTCTAGGTTGTGCATTATGTGTGACTCTTCCAATGAGTTTATTAAACTTTTTCAGAA|ATTGGCTAAACTTCTGCTCTGTGGCACCGAGTTGGTGACAAATATCCAGGTGGCTATAGATATCAGAGAGATTCACAGGAGAGTCGAAGAAGAGGAGATAAAGCGTCAAAGGTAAGGACTGTGCT 3 1.0 0.613472033482227 0.69630014463192 Y Y 3.37448717115191 3.69106234172268 3.37448717115191 9 0.0 0.0 Y 0.0 N Y 6596 66 ENSG00000138018 ENSG00000157856 + - 2 2 26618759 26679579 coding coding EPT1 CCDC164 26531415 26624784 + + 0.0 26606215 26644156 + - N - 0.24732544065394 N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 5 1.00409323404627 0.6283680238870201 1.00409323404627 0.6283680238870201 4 - 0.4 0.98172076931738 HCT116-unstranded 10.0 382576 TGCTGGACGTCATGGACAGAGGACTGATCCTGGAGGTCAGCGGTCATGCCATTTATGCCATCAGGCTGTGCCAGTGCAAGGTGTACTGGTCTGGGCCATGTGCCCCATCACTTGTTGCTCCCAACCTGATTGAGAGACAAAAGAAGGTCAAGCTATTTTGTCTGGAAACATTCCTTAGC|GGCCCCTCCTCAAGTGTCTGGCTGAAAGATGCCACCCAGGGAAGGGAACTCGGGCTAGCTAAGGAGGCCATTCTTGATGTTGCTTCTAGATCTCATGTCATCACCGAGCCCTCAGCTGCTGGTGGCAGCTGCTCAGCAGACCCTTGGCATGGGAAAGAGACGGAGTCCACCCCAAGCCATCTGCCTTCACTTAGCTGGAG 8 1.0 0.685365348564398 0.747752670672597 Y Y 3.60935140704395 3.40744620240479 3.40744620240479 0 0.994428109379594 0.0 Y 0.0 N Y 3777 850 ENSG00000117595 ENSG00000162757 + - 1 1 209979465 209957904 coding intron IRF6 C1orf74 209959036 209955661 - - 0.0 209963840 209957054 - + N - 3.34920681239389 N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 8 1.07535146355923 1.23082396431478 1.23082396431478 1.07535146355923 4 - 8.25 0.988192758555385 HCT116-unstranded CGHSA0346 10.0 951353 CCATCCCCAGGTGAGGGGGGTGAGTTCAGGAAGCGGAGACCCCGAGGAACCCAGCAGGGTCACCATTTGCAGCGCAACATGGCAGGAGCTGGAGGAGGGAATGATATTCAGTGGTGTTTTTCTCAGGTGAAAGGAGCAGTAGATGATGATGTAGCAGAA|GGTTCCTGGGTGGAGCTACCCATGAACAGCAGCAATGGCAATGATAATGGCAATGGGAAAAATGGGGGGCTGGAACACGTACCATCCTCATCCTCCATCCACAATGGAGACATGGAGAAGATTCTTTTGGATGCACAACATGAATCAGGACAGAGTAGTTCCAGAGGCAGTTCTCACTG 4 0.92250341307556 0.514604322986716 0.329519897463699 Y Y 3.42100929106525 3.62039369541802 3.42100929106525 0 0.0 0.0 Y 0.0 N Y 3794 2410 ENSG00000221914 ENSG00000104765 + - 8 8 26230196 26363152 coding utr5p PPP2R2A BNIP3L 26149007 26240414 + + 0.0 26151256 26248759 + - N - - N SA470 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 11 0.8615767750203471 0.997615213181455 0.997615213181455 0.8615767750203471 4 - - 0.989027350018282 HCT116-unstranded 10.0 693008 AGCCATGGCCCTAGCCCCATGGGGCCCAGTGAAGGTGAAAAAGGAGGAGGAAGAAGAAGAAAACTTCCCAGGTCAGGCATCCAGCCAACAAGTGCACTCCGAGAACATCAAAGTCTGGGCCCCAGTGCAGGGTCTTCAGACAGGCCTTGATGGATCAGAAGAGGAAGAAA|AGAGAGGCTGATCATCAGGGGTTCACTTTCAGAGAAGTTGAGAATGCAGGCTGAACAAGGAAGAGGAAGGGGAATCCTGCAGGGATGAATGAGAGGACAGCAATGCATGTGTGATGTGTGTGAGCACACACACACAGTAACCTTTCCTAGGAGAACTGTATTACTCTAATGATAATCACCTTTGAGGAAAAAAAACTTG 10 0.983770821244096 0.844084463961114 0.6693021624355129 N Y 3.4722913423473 3.35356364524965 3.35356364524965 1 0.0 0.0 Y 0.0 N Y 1538 306 ENSG00000169981 ENSG00000186446 + - 3 3 44702283 44778575 coding intron ZNF35 ZNF501 44690219 44771088 + + 0.0 44692751 44775689 + - N - 0.174225478022681 N SA470 2 0.0 1.2 1 1 1 N N 0.0 0.0 5 0.829186670696274 0.816230628966645 0.829186670696274 0.816230628966645 4 - 0.4 0.962405660400443 HCT116-unstranded 10.0 294935 GAAGTGGGGGCAGAGGAGGGTGGCTCTGTTTCCCCAAGGCAAAGCTTATGACCAATGGGCCATCGGACTGGAGACCCCTGATTGTGGGAAGGGTTGCCAGGGATAAAGAGCTTCCTCACTGGATGGGACCCGCCTTTCTGTGTTGTGTTCTGCCCTGTGCTCTTCTCTCTACGTTAACGTTTCCTGTAGTATGTTTCTTCATCTCATCGCCAAG|CAGGAGAGCCTGTCCTGCCTCCAGTCCACCTGTGGCCTTGTCCAGTCTGTAGAGTTGAAGGAGAAGCTGGAGCTGGCTGGGAGTCAAGGTCGAAGTTTTTTCATCCAAAGCCAGTTCCGGTGAGCCGCCAAGCACTGGGT 8 0.7473764539842941 0.246379317293054 0.747752670672597 Y Y 3.5455299893015098 3.39077874676146 3.39077874676146 0 0.992877263581489 0.0 Y 0.0 N N 6795 6316 ENSG00000100227 ENSG00000182841 + - 22 22 43010968 42978044 utr3p intron POLDIP3 RRP7B 42979727 42951229 - - 0.0 42981563 42973968 - + N - 1.40116417385424 N SA470 1 0.0 1.0 1 0 2 N Y 0.0 0.0 7 1.0170492757759 0.6283680238870201 1.0170492757759 0.6283680238870201 4 - 31.7142857142857 0.991137792807537 HCT116-unstranded 10.0 656581 TAGTAATCTAGCTGTGAATGAAGACTGTGAGCTGAAGATTCTGGATTTTGGACTGGCTCGGCACACAGATGATGAAATGACAGGCTACGTGGCCACTAGGTGGTACAGGGCTCCTGAGATCATGCTGAACTGGATGCATTACAACCAGAC|AGATTCTGGATTTTGGGCTGGCGCGACATGCAGACGCCGAGATGACTGGCTACGTGGTGACCCGCTGGTACCGAGCCCCCGAGGTGATCCTCAGCTGGATGCACTACAACCAGACAGGCCAAATCCTACATCCAGTCCCTGCCACAGACCCCCAGGAAGGATTTCACTCAGCTGTTCCCACGGGCCAGCCCCC 2 0.940877853834145 0.537978026125945 0.813906614117739 Y Y 3.61311296376292 3.4378445805779303 3.4378445805779303 0 0.0 0.0 Y 0.0 N Y 1216 3205 ENSG00000112062 ENSG00000156711 + - 6 6 36079013 36107842 coding coding MAPK14 MAPK13 35995488 36095586 + + 0.0 36043739 36104433 + - N - - N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 6 0.680192190805537 0.647802086481464 0.680192190805537 0.647802086481464 4 - - 0.991176289588864 HCT116-unstranded 10.0 376569 ATATGTGCAATGGTCTTTACCATTCATTGTCTTCGGAGCCACGGGTCTGACCTCCGGCCTCCTGAGTTTGTTATTGCCGGAGACCCTTAACAGTCCGCTGCTAGAAACATTCTCCGACCTTCAGGTGTATTCGTATCGCAGGCTGGGAGAAGAAGCATTATCTTTACAGGCTTTGGACCCCCAAC|AGATGACAGATGGATTTTCACAATTTGGAAATAAAAACATGAGTGAAGGGTTCGGAAGGCAAGTCTCTGGTCCATTACACACTTCCAGAAAAACTTAGTACCCAGAGACTCACATTACTGGGAGTGCTATCTACTCACAAGTGTTGCACTCCATTGAGAAAAAAAAA 2 0.7211653267236892 0.9019681091855408 0.887070619679458 Y Y 3.4670420551118304 3.03383583220673 3.03383583220673 0 0.0 0.0 Y 0.0 N Y 118 335 ENSG00000163393 ENSG00000173212 + - 1 1 116612675 116677861 coding intron SLC22A15 MAB21L3 116519119 116654376 + + 0.0 116609329 116655028 + - N 0.987893038375898 0.0619913895650667 N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 5 0.8680547958851621 0.803274587237016 0.8680547958851621 0.803274587237016 4 2 0.2 0.951302257474373 HCT116-unstranded 10.0 655802 CCTGGAAGGACTTTACGATAAAACGTGTCAATTCCTTAGCATTGGCCGAAGAGTTAAGGTCATGAATGAAAAACTTCAGCACTGCATGGAACTAACAGATCTAATGCGGAATCACCTGAATGAGAAGAGGGCACTCCGCTTGGAGTGGATGATTGTCATCCTCATTACCATAGAG|AAACATCTTACGCCGCTCAACTCATCTGCAAGGTAAAGGAAGCACCTCTGCCTCTGTGCACGCTACAGGAATCTGTACTTCAGCATGACTTTCAGTTACCATTGGTGACACAAAGATACTGCTGGTTTACAGTATCTCCCCGGTTCTAAAGGCCACTCCATTTCAAGTCTTAAAGATTAAAACAAACACGAAAAGTCAAGGGACAAGGGTAAAG 7 0.9678414188193408 0.510742195620822 0.0822876072337944 Y Y 3.762733552573681 3.69359248957888 3.69359248957888 3 0.0 0.0 Y 0.0 N N 900 6128 ENSG00000155906 ENSG00000181472 + - 6 6 151773259 151712683 coding upstream RMND1 ZBTB2 151725989 151685252 - - 0.0 151726855 151713369 - + N - - N SA470 1 0.0 1.0 1 0 1 N Y 0.0 0.0 9 1.11421958874812 1.12069760961293 1.12069760961293 1.11421958874812 4 - - 0.9775239364318872 HCT116-unstranded 10.0 950057 CTCTGTTGAGGTCGGTGCTGCGCTTCCGCCTCGGGGGCCTAGCCTGTCAGACTGCCTTGGTCTTCCACCTGGACACCCTGGGGGCCAGCATGGACGCTGGCACAATCTTGAGAGGGTCAGCCTTGCTGAGCCTATGTCTGCAGCACTTCTTGGGAGGCCTGGTCACCACAGTCACCTTCACTGGGATGATGCGCTGCAGCCAGCTGGCCCCCAGGGCC|CTGCAGGTGGCCGTCTGCCCGGCCCAGCACCATGCACACGCTTGTGTTCTTGAGCACACGGCAGGTGCTGCAGTGCCAGCCAGCTGCCTGCCAGGCCCTGCCCTTGCTGCCACGCGAACTCTTCCCCCTGCTGTTCAAGGTGGCCTTCATGGACAAGAAGACAGTGGTACTGCGCGAGTTGGTACA 4 0.3918247219119 0.454751400119145 0.698979418134304 N Y 3.06316128781662 3.2891197328912503 3.06316128781662 0 0.0 0.0 Y 0.0346475507765831 N Y 2944 20430 ENSG00000167700 ENSG00000160959 + - 8 8 145736569 145750557 coding utr5p MFSD3 LRRC14 145734457 145743376 + + 0.0 145736286 145745085 + - N - - N SA470 1 0.0 1.0 1 0 1 N N 0.0 0.0 6 1.21786792258515 1.06887344269442 1.21786792258515 1.06887344269442 4 - - 0.926003094117625 HCT116-unstranded 10.0 383962 ATTGAGAGCTGGGTGAGGTTACAGGATGAATATGACTCTGTATTATACAGCATTGTTGACCTCCACTCCATTACTGTCCCCCAAGACCCAGCTGTCCTTCGGCAGAGCATCCTGGACATGACTGCTGTTCTTCTTGCCTGTGGCATAAACCCGGAAAAAAGCATCCTTTTCCAACAATCTCAG|ATTCTGAGCAGAGCACTGGTTCAGATTCTGAGGTCCTCACTGAGCGGACTTCCTGCTCCTTCAGTACTCACACTGACCTGGCCTCTGGTGCTGCAGGCCCTGTGCCTGCTGCCATGTCTTCCATGGAGGAGATTCAGGTGGAGCTGCAATGTGCT 5 0.431543566581881 0.608667088569777 0.33474973620679804 N Y 3.2583201271339903 3.5744007841648 3.2583201271339903 1 0.0 0.0 Y 0.0415453420877343 N Y 1885 86 ENSG00000116874 ENSG00000092607 + - 1 1 119683294 119532179 coding coding WARS2 TBX15 119573839 119425669 - - 0.0 119618973 119474455 - + N - 4.80530973451327 N SA470 1 0.0 1.0 1 0 1 N N 0.0 0.0 5 0.803274587237016 1.0235272966407098 1.0235272966407098 0.803274587237016 4 - 0 0.946665691957924 HCT116-unstranded 10.0 164792 CCCTCCTGGAGAGAGGTGCTGTTTCCTTCCTGTGAGTGAGGCACATGGAGCGAGGTGGCATTGGGGGCATCCTGAAGGTGGCCTGTTGAGTTCATTTTCGGAGAGAAATGTCTCCTTCTTCTGCTCCCCAAAAATACTCAGTGAGTCAGGGCCTCAGCTCACAGATGAGCAATATGTGACAAAAGAGGCCCAAGACAGATAAG|CCTTTCTATGCATAATAGCATGGTGACACAAGAAGATCGGTGAGAACAAGCAGTTGGTCATCAGTGAATTGCTGTTTATGTTCCTGCCAGTTGTCATGGTGAGTCCTTCGGAAATTGGATAAGGTTTTTTTTACA 7 0.926737606037609 0.6031452051116589 0.5369129034289299 Y Y 3.23527702852946 3.78105657260285 3.23527702852946 0 0.0 0.00294985250737467 Y 0.00294985250737467 N Y 907 7054 ENSG00000119737 ENSG00000068878 - + 2 2 54087126 54197977 intron intron GPR75 PSME4 54080050 54091204 - - 0.0 54082002 54093222 + - N - 0.495525792290706 N SA470 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 5 0.952269067127752 0.72553833685924 0.952269067127752 0.72553833685924 4 - 55.6 0.9930858892860992 HCT116-unstranded 10.0 859751 GGAAGCAGGAATGTGCATATGAGAAAGCATCACCTGCAGCTGGGAGCAGCTGGGAGTCAAGAGCAGGAGCAAACTGAGGTGCTTGCTGAAGGATCCCCACGTTCCCTGTCTTCAGTGCCTGATGTGACACATCACCTGGTGACCATGCAGTCAGGGAGGCAATCATATGAAGTTTCTGTCTTAACTGCAGTAAATCCACAAGA|GGTGTGGGACGCCTGCTCAGAGGCCCTGATAATGTTTGATAAGGATAATTTAGATGACATGGGCTATATCGTGGAGAATGATGTCATCATGCATGCTCTCACTAAGCAGTTGGAGGCTGTGTCTGGAACAGATTATGGCCTTTGCAAGCAAATGAGTACTCCTCTCCTAAAGAAAGATT 11 1.0 0.9483119616607408 0.503669503323186 Y Y 3.59681204058356 3.56385300933068 3.56385300933068 0 0.9944279942237852 0.0 Y 0.0 N Y 4744 1770 ENSG00000119725 ENSG00000119723 + - 14 14 74399214 74430373 coding coding ZNF410 COQ6 74353320 74416629 + + 0.0 74390225 74422508 + - N - - N SA470 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 14 1.30208219382774 1.08830750528886 1.30208219382774 1.08830750528886 4 - - 0.992565606363912 HCT116-unstranded 10.0 1101152 CACGAGGACAGGCGTGCAGGACAACCCCAGAGCTCTGGTTGCCCCCAGCCTCAATGGCGTCTCTCAGGCAGACCTGCTGGACGGCTGCGATGTCTGCTCCTATGACCTGAAGTCTCATGCCCCCACCTGCTAGAATCTGCGGGAGCCCGTGGTGTAGCCTCCTCTGGCCTGAAAGGTCTGCCTCACACAGGCCTTCCCTGCAGGGCAGCCCATGGTGGCAGCCGGAG|CCAGCTCCCCTAGTCCAGGCCGAGCTTGCACTTGCGTCTTGTCTGCTGCTGCTGAACCAAGATTTAGCTGTGCGCCCTCCTTGCAGTCTCCTGGAACCAGCAGGAGGAAACATGGGGGATACTGGCCTGAGAAAGCGGAGAGAGGATGAGAAGTCGATCCAGAGCCAAGAGCCTAAGACCACCAGTCTCCAAAAGGAGCTGGGCCT 26 0.8063674749970059 0.9453510234150692 0.629202228121372 N Y 3.20976656280103 3.53209488171704 3.20976656280103 1 0.0 0.0 Y 0.0 N N 850 115 ENSG00000121289 ENSG00000021488 + - 19 19 33462897 33360672 utr3p utr5p CEP89 SLC7A9 33369908 33321415 - - 0.0 33369974 33359551 - + N - - N SA470 1 0.0 1.0 1 0 1 N N 0.0 0.0 22 1.40573052766478 1.40573052766478 1.40573052766478 1.40573052766478 4 - - 0.9927735180064732 HCT116-unstranded 10.0 383294 TCGAACATCATGATGCCATTCCGGTAGAGCTTCAGCGGGATGGGCTCGAGGGTACGCAGCCGTGCCCCGCCGGGCACTGGTGTCACTTGGGTGTCACCCTCTACCACCAGCTCACTAAGATCCTGCAGGCTGGCCAGCAGCCTGTCAAAGTCCACCTCAGGGGGCGCCAATGAGTCCCCTGG|TTCTTCAGCAGCCCATCCTCGTAGTACCAGATGCAGCTACCTCCAGCTTGGGGGTCGGCGACCACCACACGGCCTGCTTTCATGTCCTCCACATGGTCCGGCACTGCCAGGAATCCCCCCAGTGCTGCATTCCAGAGGCGGAAATAAACC 1 0.9780589332939672 0.869049009391875 0.904167730469144 Y Y 3.39384326095097 3.5733677143949105 3.39384326095097 0 0.0 0.0 Y 0.0 N Y 1613 124 ENSG00000158062 ENSG00000176092 - + 1 1 26644854 26680621 coding coding UBXN11 AIM1L 26607819 26648350 - - 0.0 26612528 26650643 + - N - 2.99664377976914 N SA470 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 5 0.926356983668494 0.615411982157391 0.926356983668494 0.615411982157391 4 - 7.8 0.991157737720567 HCT116-unstranded 10.0 162025 CAGCTTCCCGCCAGAAAGCCCTGAGCCTAGTAAGCTGTTTCGCGGGGGGCGTCTTTTTGGCCACTTGTCTCCTGGACCTGCTGCCTGACTACCTGGCTGCCATAGATGAGGCCCTGGCAGCCTTGCACGTGACG|TTACAGGCCCAAAAACTGCGACTGGCATACACAAGGAGCTCTCATTATGGTGGGTCTCTGCCCAATGTTAACCAGATTGGCTCTGGCCTGGCCGAGTTCCAGAGCCCCCTCCACTCACCTTTGGATTCATCTCGGAGCACTCGGCACCATGGGCTGGTGGAACGGGTGCAGCGAGATCCTCGAAGAATGGTGTCCCCACTTCGCCG 9 0.686468990701171 0.874294119677297 0.451563702466956 Y Y 3.56914214935951 3.43681151080804 3.43681151080804 2 0.9925591981441758 0.0 Y 0.31544622926423604 N Y 6836 3550 ENSG00000143570 ENSG00000160741 + - 1 1 153940188 153931101 coding coding SLC39A1 CRTC2 153931575 153920145 - - 0.0 153934696 153927642 - + N - - N SA502 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 10 1.31421128197845 1.91916568161933 1.91916568161933 1.31421128197845 4 - - 0.9855587555233342 hTERT CGHSA0331 0.0 461281 CCCGTCCTCGGGCCGCGCCCCCGGCGCCGCGCCCTCCGCCGCCGCCAAGAGCCACCGCTGTCCCTTCCCGGACTGCGCCAAAGCCTACTACAAGTCCTCGCACCTAAAGTCGCACCTGCGGACGCACACA|GGGCTGGGTTACGACCCCTACAACCCTGAGCTGCCCAAGCCCCCCGCGCAGAGGGAGAATGGCACCCTGGGCCTGGGGGAGGAGCCGCGCCCGGATGTGCTGGAGTTGGAGCTGGTCAACCAGGCCATCGAGGCCGTGCGCAGT 12 1.0 0.910705934545122 0.630203338778579 Y Y 3.5246463161926003 3.3576612292090497 3.3576612292090497 1 0.0 0.0 Y 0.0 N Y 5273 5006 ENSG00000129911 ENSG00000079313 + - 19 19 1863567 1848452 coding intron KLF16 REXO1 1852399 1815248 - - 0.0 1863040 1828630 - + N - - N SA502 1 0.254237288135593 1.0 1 0 1 Y Y 0.254237288135593 0.0 7 1.23076929582109 1.41851376467516 1.41851376467516 1.23076929582109 4 - - 0.9856945606800008 hTERT 0.0 924 CTGCAAGCCTCACTTCATTCACTGTAAAACCAATAGCAAACAACGGAAGAGACGGGCAGAGTTGAAGCAACAAAGAGAGGAGGAGGCAACATGGCAAGAGCAGGAAGCCCCTCGGAGAGACACTCCCACCGAAAGTTCTTGCGCAGTGGCCGCCATTGGCACCCTGGAAGGCAGCCCCCCAG|ATGAGCCCACCTCCCCCAAGAGGCCGAAGAGCATCTCTGAGCCACAGCACAGTGATGCGGAAGGGGACGCTGCCTCTCCCCTGCCCTCCGAGTGGACCTCAGTGAGGATCAGCCCTGGGGAGGAAGCAGCTGGACAGGATGTGCTGGCTGTGCGTGT 33 1.0 0.4567704155465779 0.48142165848943 Y Y 3.25360004855864 3.34425662684812 3.25360004855864 0 0.0 0.0 Y 0.0 N N 8263 1454 ENSG00000133816 ENSG00000133808 + - 11 11 12285334 12380691 coding upstream MICAL2 MICALCL 12115543 12297627 + + 0.0 12281444 12297533 + - N - - N SA502 1 0.0 1.0 1 0 1 N Y 0.0 0.0 41 1.91916568161933 1.81486319892263 1.91916568161933 1.81486319892263 4 - - 0.963664240904771 hTERT 0.0 957 CTCAAGCACATCTTGACCCAGAGGAGCTACTACCCACTCTACCCGCCCCAAGAAGACATGGCCATTGACTATGAGTCGTTCTATGTTTACGCACAGCTGCCTGTCACCCCAGATGTCCTCATCATCCCGTCAGAGCTGAGGTACTTCGTGAAG|CTCCTCAGCCCTGGACCGGGGACAAGTAACCCTCGGTGACAAGACCAAAGTGCACTGCTGCCCACACAGTTCCTACCTTTCTGGCTTCAATTCTTCAGAAGAGTTTGCCGTCCTTTGGGGAGAACGTGATTTTTGTTATCTCAGCCCACTGAC 3 1.0 0.24671398478946105 0.549227395792296 Y Y 3.700409212917549 3.50678730447985 3.50678730447985 0 0.0 0.0 Y 0.0 N Y 5070 3055 ENSG00000014138 ENSG00000149798 + - 11 11 65073060 65089900 coding utr5p POLA2 CDC42EP2 65029233 65082289 + + 0.0 65063461 65088015 + - N - - N SA502 1 0.0 1.0 1 0 1 N Y 0.0 0.0 5 1.12646681312439 1.18904830274241 1.18904830274241 1.12646681312439 4 - - 0.980722300947382 hTERT 0.0 336252 ACGATGGCCCTCGGTGACATCCCAGGAATGGGTCTTCCAGATGCTATCGCGACAGAACAATTACACCGTCAACAACAAGAGAAATGGAGTGGCCAAAGTCAACATCTTCTTCAAGGAGCTGAACTACAAAACCAATTCTGAGTCTCCCTCTGTCAC|GGTGCTCCTGGAGCTGTTGGTGGGAATATACCCCTCAGGGGTTATTGGACTGGTCCCTCACCTAGGGGACAGGGAGAAGAGAGATAGTGTGTGTCCCCAAGGAAAATATATCCACCCTCAAAATAATTCGATTTGCTGTACCAAGTGCCACAAAGGAACCTACTTGTACAATGACTGTCCAGGCC 25 0.882301605255889 0.6405473697008891 0.5930923338235129 N Y 3.45976132345673 3.52680574168821 3.45976132345673 0 0.99360848702954 0.0029239766081872198 Y 0.0029239766081872198 N Y 30656 10120 ENSG00000111319 ENSG00000067182 + - 12 12 6486896 6451280 coding coding SCNN1A TNFRSF1A 6456009 6437923 - - 0.0 6457893 6443410 - + N - - N SA502 1 0.0 1.0 1 0 2 Y N 0.0 0.0 19 1.67926997141691 1.67926997141691 1.67926997141691 1.67926997141691 4 - - 0.9841206898876308 hTERT CGHSA0430 0.0 245573 GAGCTAACCATGAAGGCTCAGCTTCCCGCCAGAAAGCCCTGAGCCTAGTAAGCTGTTTCGCGGGGGGCGTCTTTTTGGCCACTTGTCTCCTGGACCTGCTGCCTGACTACCTGGCTGCCATAGATGAGGCCCTGGCAGCCTTGCACGTGACG|TTACAGGCCCAAAAACTGCGACTGGCATACACAAGGAGCTCTCATTATGGTGGGTCTCTGCCCAATGTTAACCAGATTGGCTCTGGCCTGGCCGAGTTCCAGAGCCCCCTCCACTCACCTTTGGATTCATCTCG 15 0.7136012873058071 0.6001050763307111 0.847746707451937 Y Y 3.56914214935951 3.43681151080804 3.43681151080804 0 0.992563315825056 0.0 Y 0.955379894950335 N Y 6207 3601 ENSG00000143570 ENSG00000160741 + - 1 1 153940188 153931101 coding coding SLC39A1 CRTC2 153931575 153920145 - - 0.0 153934696 153927642 - + N - - N SA503 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 7 1.37592968983336 0.923204437049481 1.37592968983336 0.923204437049481 4 - - 0.961310745714884 hTERT CGHSA0331 0.50 693227 GCCCGCCTCCTCCTCCTCAGCCGCCTCGTCCCCGTCCTCGGGCCGCGCCCCCGGCGCCGCGCCCTCCGCCGCCGCCAAGAGCCACCGCTGTCCCTTCCCGGACTGCGCCAAAGCCTACTACAAGTCCTCGCACCTAAAGTCGCACCTGCGGACGCACAC|AGGGCTGGGTTACGACCCCTACAACCCTGAGCTGCCCAAGCCCCCCGCGCAGAGGGAGAATGGCACCCTGGGCCTGGGGGAGGAGCCGCGCCCGGATGTGCTGGAGTTGGAGCTGGTCAACCAGGCCATCGAGGCCGTGCGCAGTGAGGTGGAGCTGGAGCAGC 8 0.9759866597478872 0.8192004318002201 0.343707148566973 Y Y 3.5246463161926003 3.37023110089298 3.37023110089298 0 0.0 0.0 Y 0.00935631648419921 N Y 3861 3218 ENSG00000129911 ENSG00000079313 + - 19 19 1863567 1848452 coding coding KLF16 REXO1 1852399 1815248 - - 0.0 1863040 1828630 - + N - - N SA503 1 0.507246376811594 1.0 1 0 1 Y Y 0.507246376811594 0.0 6 1.22502127223873 1.40256058705594 1.40256058705594 1.22502127223873 4 - - 0.988354449982336 hTERT 0.50 2012 AGATTCAGCCGAATACTCAAGCACATCTTGACCCAGAGGAGCTACTACCCACTCTACCCGCCCCAAGAAGACATGGCCATTGACTATGAGTCGTTCTATGTTTACGCACAGCTGCCTGTCACCCCAGATGTCCTCATCATCCCGTCAGAGCTGAGGTACTTCGTGAAG|CTCCTCAGCCCTGGACCGGGGACAAGTAACCCTCGGTGACAAGACCAAAGTGCACTGCTGCCCACACAGTTCCTACCTTTCTGGCTTCAATTCTTCAGAAGAGTTTGCCGTCCTTTGGGGAGAACGTGATTTTTGTTATCTCAGCCCACT 30 0.593927112186 0.710525035309296 0.522195482337261 Y Y 3.700409212917549 3.50678730447985 3.50678730447985 0 0.0 0.0 Y 0.0 N Y 1482 3134 ENSG00000014138 ENSG00000149798 + - 11 11 65073060 65089900 coding utr5p POLA2 CDC42EP2 65029233 65082289 + + 0.0 65063461 65088015 + - N - - N SA503 1 0.0 1.0 1 0 1 N Y 0.0 0.0 8 1.28716003242476 1.12737464908927 1.28716003242476 1.12737464908927 4 - - 0.955148174172894 hTERT 0.50 1153 TACAGCGGCTGATGACTCCTCTGTCAAGCTCTGGGATCTGCGCAAGCTTAAGAACTTTAAGACTTTGCAGCTGGATAACAACTTTGAGGTAAAGTCACTGATCTTTGACCAGAGTGGTACCTACCTGGCTCTTGGGGGCACGGATGTCCAGATCTACATCTGCAAACAATGGACGGAGATTCTTCACTTTACAGAGC|CCCACGATGTCGGCCAACGCCACACTGAAGCCACTCTGCCCCATCCTGGAGCAGATGAGCCGTCTCCAGAGCCACAGCAACACCAGCATCCGCTACATCGACCACGCGGCCGTGCTGCTGCACGGGCTGGCCTCGCTGCTGGGCCTGGTGGAGAATGGAGTCATCCTCTTCGTGGTGGGCTGCC 27 0.637114795191816 0.948056042880013 0.346324966922383 N Y 3.58424216889964 3.53209488171704 3.53209488171704 6 0.0 0.0 Y 0.0 N Y 3304 721 ENSG00000110107 ENSG00000183134 + - 11 11 60674060 60623444 coding intron PRPF19 PTGDR2 60658202 60618413 - - 0.0 60665318 60621204 - + N - 39.3979283811779 N SA503 1 0.0 1.0 1 0 1 N N 0.0 0.0 12 1.65999259354089 1.48245327872369 1.65999259354089 1.48245327872369 4 - 0.0833333333333333 0.908157840907693 hTERT 0.50 497662 AATGGCAGTCTGATCTGCACAGCTTCCAAAGACAAGAAAGTGAGAGTCATTGATCCCAGGAAACAAGAGATTGTTGCT|GTGCCATGCCTCTGCAACTCCTCCTGTTGCTGATCCTACTGGGCCCTGGCAACAGCTTGCAGCTGTGGGACACCTGGGCAGATGAAGCCGAGAAAGCCTTGGGTCCCCTGCTTGCCCGGGACCGGAGACAGGCCACCGAATATGAGTAC 6 0.021084829929389 0.602003652097494 0.578110444256405 Y Y 3.42360979693834 3.35926336043241 3.35926336043241 0 0.0 0.0 Y 0.0 N Y 15594 4836 ENSG00000110880 ENSG00000110876 + - 12 12 109125372 109027735 coding coding CORO1C SELPLG 109038885 109015686 - - 0.0 109052514 109018088 - + N - - N SA503 1 0.0 1.0 1 0 3 N Y 0.0 0.0 5 1.42031451853766 0.940958368531202 1.42031451853766 0.940958368531202 4 - - 0.984978752371024 hTERT 0.50 497693 CAGTGCTGTTCCTCAGCATTTCTGGAGGCTCCGTTTCTGGCAGGAAATCATAATCTAGGTACTCATATTCGGTGGCCTGTCTCCGGTCCCGGGCAAGCAGGGGACCCAAGGCTTTCTCGGCTTCATCTGCCCAGGTGTCCCACAGCTGCAAGCTGTTGCCAGGGCCCAGTAGGATCAGCAACAGGAGGAGTTGCAGAGGCATGG|CACCACACTGGCCGTGTCTGTGGTTTTCTTGGGGATGCTGATCAGGTCGCACTTCTTGTTTGCAGTGGGCTTGCTATCCAGAATGTTCTTCTTGACCACCTTGAGATCCCTGTTTTTGCCTGGAATGTACCCGTGCTTCAAGGAGATGAGGATTGGGTCTGCATTCTTGCCTTCGAACCACTCTTCTGCCTCCAGCGCGGCCTCTGGCCCCGCT 275 1.0 0.9232127082514592 0.464107274996767 Y Y 3.35823029066252 3.37548038812845 3.35823029066252 1 0.0 0.0 Y 0.0 N Y 4836 15594 ENSG00000110876 ENSG00000110880 - + 12 12 109027735 109125372 coding intron SELPLG CORO1C 109015686 109038885 - - 0.0 109018088 109042381 + - N - 1.81590459918712 N SA503 1 0.0 1.0 1 0 1 N Y 0.0 0.0 126 1.89079370280326 1.91742460002584 1.91742460002584 1.89079370280326 4 - 7.50793650793651 0.990545530611473 hTERT 0.50 500078 TGACAGCAGTATTCGCTATTTTGAGATCACGGATGAATCCCCGTACGTCCACTACCTCAACACATTCAGCAGCAAGGAGCCTCAGAGAGGGATGGGTTACATGCCCAAGAGGGGACTTGATGTTAACAAATGTGAGATTGCCA|GGTGCCATGCCTCTGCAACTCCTCCTGTTGCTGATCCTACTGGGCCCTGGCAACAGCTTGCAGCTGTGGGACACCTGGGCAGATGAAGCCGAGAAAGCCTTGGGTCCCCTGCTTGCCCGGGACCGGAGACAGGCCACCGAATATGAGTACCTAGATTATGATTTCCTGCCAGAAACGGAGCCTCCAGAAATGCTGAGGAA 24 1.0 0.206887816332656 0.551068096188723 Y Y 3.46873747229102 3.47076375903745 3.46873747229102 3 0.0 0.0 Y 0.0 N Y 15594 4836 ENSG00000110880 ENSG00000110876 + - 12 12 109125372 109027735 coding utr5p CORO1C SELPLG 109038885 109015686 - - 0.0 109046048 109018088 - + N - - N SA503 1 0.0 1.0 1 0 3 N Y 0.0 0.0 10 1.10962071760755 1.7221313537269198 1.7221313537269198 1.10962071760755 4 - - 0.970446356529573 hTERT 0.50 246329 AGGGGGATGAACCGCGAGGGAGCTCCCGGGAAGAGTCCGGAGGAGATGTACATTCAGCAGAAGGTCCGAGTGCTGCTCATGCTGCGGAAGATGGGATCAAACCTGACAGCCAGCGAGGAGGAGTTCCTGCGCACCTATGCAGGGGTGGTCAACAGCCAGCTCAGCCAGCTGCCTCCGCACTCCATCGACCAG|GTTAACAAGCACAAGCCCTGGCTGGAGCCCACCTACCACGGCATAGTCACAGAGAACGACAACACCGTGCTCCTCGACCCCCCACTGATCGCGCTGGATAAAGATGCGCCTCTGCGATTTGCAG 12 0.986196866858168 0.6209203087419239 0.0475672891054254 Y Y 3.17564132302907 3.48912663185998 3.17564132302907 3 0.99196092398494 0.0 Y 0.00315457413249209 N Y 6294 63992 ENSG00000178585 ENSG00000171603 + - 1 1 9970394 9884584 coding coding CTNNBIP1 CLSTN1 9908334 9789084 - - 0.0 9931245 9833452 - + N - - N SA503 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 6 1.5268381074279902 0.7989269166774351 1.5268381074279902 0.7989269166774351 4 - - 0.985674775564694 hTERT CGHSA0344 0.50 458601 ATCTCATCGAAGATGGCGGCGCGATCTGTGTCGGGCATTACCAGAAGAGTCTTCATGTGGACAGTCTCAGGGACACCATGTAGAGAATTTTGGTCTCGATT|CAGGTTTTGAGGTTTTGCTGAAGATATTCCTGAAGAATCATCCCAGGTGCCACACTAAAAAAATGATCCAGTTGACAGCTACCCCTGTGAGTGCACTTGTTGATGAGCCAGTGCATATCCGAGCTACAGGCCTGATTCCCTTTCAGATGGTGAGTTTTCAGGCATCACTGGAAGATGAA 3 1.0 0.8992847994310541 0.232879610759013 Y Y 3.62295434849776 3.50848272165904 3.50848272165904 2 0.0 0.0 Y 0.0 N Y 1067 613 ENSG00000136897 ENSG00000136881 + - 9 9 104160896 104145801 coding utr5p MRPL50 BAAT 104149915 104122699 - - 0.0 104160783 104133745 - + N - - N SA503 2 0.0 1.3 1 3 1 N Y 0.0 0.0 10 0.701280293527971 1.42919148427852 1.42919148427852 0.701280293527971 4 - - 0.932968475385817 hTERT 0.50 694744 TCAGCGACAACGGCTGCTGCCCCGACACTGCGGCGCCTGGCGCTTTCCTCACGGTCTGGGCTTGAGAGGAAGCCGGAGTCCTTGTCTAAAGTCAGCATCATCAAGAGACTGGGCGCAGCTGCCCTTGTGCCCGAGGCCCAGGACAGCCAGGTCACCAGCACCAAGAG|TGAATACATCAAGACCTGGAGGCCACGGTACTTCCTGCTGAAGAGCGACGGCTCCTTCATTGGGTACAAGGAGAGGCCCGAGGCCCCTGATCAGACTCTACCCCCCTTAAACAACTTCTCCGTAGCAGAATGCCAGCTGATGAAGACCG 28 1.0 0.8600300361916229 0.271445514021795 N Y 3.1380156463633195 3.87464452633266 3.1380156463633195 2 0.0 0.0 Y 0.0 N Y 1133 7605 ENSG00000160392 ENSG00000105221 + - 19 19 40854434 40791443 utr3p coding C19orf47 AKT2 40825443 40736224 - - 0.0 40827935 40762961 - + N - - N SA503 1 0.0 1.0 1 0 1 Y N 0.0 0.0 9 1.5002072102054098 1.20726734075701 1.5002072102054098 1.20726734075701 4 - - 0.976983331321955 hTERT 0.50 108334 ACACCTGGTACACAAACCATCGGAGGAGAGAGTAAGAGAAATAATTATCAATGCTGTTCGGATAGAACAGGAGTTCCTCACTGAGGCCTTGCCTGTGAAGCTCATTGGGATGAATTGCACTCTAATGAAGCAATACATTGAGTTTGTGGCAGACAGACTTATGCTGGAACTGGGTTTTAGCAAGGT|GCTGGGAGACCGTGAAGTGCAAAGCAGATGGAGTCCAGGCCCTCGGGGAGACAGCACGCCAGTGAGGGAGATGGAGACCAATCACCCACCCAGTGTGCGGGGATGAGAAGCTCGGGAAGGTCT 97 0.878871559845994 0.8478993622336279 0.256010115008216 Y Y 3.51360402781852 3.44040523365767 3.44040523365767 1 0.9918961447678992 0.0 Y 0.6353265145554681 N Y 19790 565 ENSG00000171848 ENSG00000163009 + - 2 2 10271545 10351851 coding utr5p RRM2 C2orf48 10262455 10281509 + + 0.0 10269281 10281981 + - N - - N SA503 2 0.9351851851851852 1.5675675675675702 1 21 1 N Y 0.0 0.9351851851851852 37 1.5268381074279902 0.958712300012922 1.5268381074279902 0.958712300012922 4 - - 0.930674232319227 hTERT CGHSA0554 0.50 245015 AGAAAATCTTAAAAGAAACAAAACAATCAGTGTGGATAAGAAATATTCAGCTTGGTTTCTTTGGAAGTATATTTGGATTAATGGGTGTATACATTTATGATGGAGAACTGGTATCAAAGAATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCA|GCCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTGGTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAACGGCTTAATTCAAGGAGTAAAGGGTTTGTTGTCATT 27 0.80426188686353 0.6483681734592429 0.464833559238229 N Y 3.73233517440054 3.6988816296077 3.6988816296077 0 0.0 0.0 Y 0.0028818443804034 N Y 2563 8055 ENSG00000117620 ENSG00000156875 + - 1 1 100492535 100548933 coding coding SLC35A3 HIAT1 100435345 100503653 + + 0.0 100480976 100515465 + - N - - N SA503 1 0.0 1.0 1 0 1 Y N 0.0 0.0 15 1.4646993472419598 1.54459203890971 1.54459203890971 1.4646993472419598 4 - - 0.990686487105077 hTERT 0.50 595760 CCGCGGCCCTGGGCGCCGTGGTGTCGACGGGCCCCGAGCCTATGACGGGCCAGGGCCAGTCGGCGTCCGGGTCGTCGGCGTGGAGCACGGTATTCCGCCACGTCCGGTATGAGAACCTGATAGCGGGCGTGAGCGGCGGCGTCTTATCCAACCTTGCGCTGCATCCGCTCGACCTCGTGAAGATCCGCTTCGCC|GGATCTTCTAAGGGTGTGAGGATACAGGCGTCAAAGACCCCGTGCTGAGACAGCTCCATAACAACATGCAGATATTTGGCAATGAGGGTTCAGAAGAGGACTTGCTGTGGAGAAGAGAGAAAAGAGATGGGAAGACTCTGTGAATGAATAGAGAACACTCTGCAAGCATCC 10 0.5048941771637829 0.9136764647852692 0.6097015484256341 N Y 3.48696720636436 3.660633458326 3.48696720636436 2 0.994168024797878 0.0 Y 0.988336049595756 N Y 918 184 ENSG00000164933 ENSG00000247081 + - 8 8 104427417 104311000 coding intron SLC25A32 RP11-318M2.2 104410863 104169218 - - 0.0 104427012 104258912 - + N - - N SA503 1 0.0 1.0 1 0 1 N N 0.0 0.0 5 1.48245327872369 1.24277520372045 1.48245327872369 1.24277520372045 4 - - 0.972233634450352 hTERT 0.50 416773 GACCTGCGAGACTCACAAGAGGGGAAGCTGACAGAGATACCTACAGACGGAGTGCTGTGCCACCTGGTGCCGACAAGAAAGCCGAGGCTGGGGCTGGGTCAGCAACCGAATTCCAGTTT|GCTGGAGTAAAAGGGACATTGGGAAGATTAGTTGGAATTTTTGAGAACCAGGAGAGGAAGCACAGGACGTATGTCTATGTGCTCATTGTCACTGAAGTGCTGGAAGACTGGGAAGATTCAGTTAACATTGGAAGGAAGAGGGAATGGTTTAAAATAGAAGACGCCATAAAAGTGCTGCAGTATCACAAACCCGTG 19 0.975626305597342 0.9405813405465828 0.51900352888407 Y Y 3.60935140704395 3.27870928670295 3.27870928670295 1 0.991623315993064 0.0 Y 0.983246631986128 N Y 51693 1825 ENSG00000124614 ENSG00000112664 + - 6 6 34393902 34360451 coding coding RPS10 NUDT3 34385231 34255997 - - 0.0 34386146 34263462 - + N - - N SA503 17 0.0 9.2 4 5 1 Y Y 0.0 0.0 5 0.8166808481591559 1.4646993472419598 1.4646993472419598 0.8166808481591559 4 - - 0.9115792048972728 hTERT CGHSA0652 0.50 245931 TCCTCGGGGCCTCCAGCCTGAGTGGGCGCTGCTGGGCCGGCTCCCTCTGGCTTTTTAAGGACCCCTGTGCCGCCCCCAACGAAGGCTTCTGCTCCGCCGGAGTCCAAACGGAGGCTGGAGTGGCTGACCTCACTTGGGTTGGGGAGAGAGGTATTCTAGTGGCCTCCGATTCAGGTGCTG|CCCATAAACTCGTGTGTTATTTCACCAACTGGGCACACAGTCGGCCAGGCCCTGCCTCGATCTTGCCCCATGACCTGGACCCCTTTCTCTGCACCCACCTGATATTTGCCTTTGCCTCAATGAACAACAATCAGATTGTTGCTA 1 0.554256106614564 0.498629931726043 0.5939190480221379 N Y 3.6052936758779 3.4451253122330296 3.4451253122330296 0 0.9930769230769232 0.0 Y 0.0 N Y 2958 1098 ENSG00000116455 ENSG00000085465 + - 1 1 111991998 111970399 coding coding WDR77 OVGP1 111982512 111956936 - - 0.0 111991241 111969263 - + N - - N SA503 1 0.0 1.0 1 0 1 Y N 0.0 0.0 5 1.3581757583516398 1.18951340927529 1.3581757583516398 1.18951340927529 4 - - 0.967583310822282 hTERT CGHSA0371 0.50 245108 CTGCAGTGCGCCTGGCTACCTTCCTACCTCGCTGGCTTGGCATCCTCAGCAAAGTGAAGTCTTTGTCTTTGGTGATGAGAATGGGACAGTCTCCCTTGTGGACACCAAGAGTACAAGCTGTGTCCTGAGCTCAGCTGTACACTCCCAGTGTGTCACTGGGCTGGTGTTCTCCCCACACAGTGTTCCCTTCCTGGCCTCTCTCAGTGAAGACTGCTCACTTGCTGTGCTGGACTCAAGCCTTTCTGAGTT|GTGCTGCCCATAAACTCGTGTGTTATTTCACCAACTGGGCACACAGTCGGCCAGGCCCTGCCTCGATCTTGCCCCATGACCTGGACCCCTTTCTCTGCACCCACCTGATATTTGCCTTTGCCTCAATGAACAACAATCAGATTGTTGCTAAGGATCTCCAGGATGAGAAAATTCTCTACCCA 1 0.0159526943741497 0.4141327389379579 0.481045869772866 N Y 3.36079094374226 3.4451253122330296 3.36079094374226 0 0.994518213268213 0.0 Y 0.0 N Y 2958 1098 ENSG00000116455 ENSG00000085465 + - 1 1 111991998 111970399 coding coding WDR77 OVGP1 111982512 111956936 - - 0.0 111984647 111969263 - + N - 6.80030481532503 N SA503 1 0.0 1.0 1 0 2 Y N 0.0 0.0 10 1.62448473057745 1.64223866205917 1.64223866205917 1.62448473057745 4 - 1.7 0.9805569604065072 hTERT CGHSA0371 0.50 108525 TCCATTTAGCTCAAGGCAGAACTGCCTTAAATGTTCATACTTCCACACACCTTCATCTTGGCCTTCAGGTGGTTCAAGAATTTTGTCAATATTGGAGCAATCTGCTCTTATGTTCTGTTGAATATACTGTTGAACAGCTAGTGTACTGTCCATTTCATCAAAGGATTCATCAGGCCAATTATAGAAAT|CCATTACTCCCTCCGCCTCAGACTCGTACTCTGCTCTAGTGTAGCGCCGCAAAGAGACTCGCAGTCCGGCCCTGGCGACACGTGAAAAAATCACCCAGCGCGCAGGCGCGCTCGCCCCAGCGGTCGCCGCT 10 1.0 0.606604223436036 0.7655288664678991 Y Y 3.10869019075342 3.43142908482337 3.10869019075342 1 0.992390267175572 0.0 Y 0.5205868320610689 N Y 6033 6743 ENSG00000115540 ENSG00000115541 - + 2 2 198418423 198368181 coding intron MOB4 HSPE1 198380295 198364718 + + 0.0 198388348 198365163 - + N - 0.546287600997413 N SA503 2 0.0 1.4 1 2 1 N Y 0.0 0.0 5 1.17175947779357 1.05635892316239 1.17175947779357 1.05635892316239 4 - 619.6 0.91931703645197 hTERT 0.50 144222 GTGGTGGGGGTGCCGGCGGGGGAGCCGGTGGAGACAGAGGCAGGGGTGGCGCCTCCATGCGGGGTTCCTCCACAGGAAGGGTATGTGCCAGCCTGGCCAGGCTATTGGCCTTCTTCTGTTCCTGCTCTCGCTCCTGCTCCAAGCGAAGCCGCTCCTGCTCCT|TCCTTTCATCCTCCGTGGGTTCCGGGTTTTCCTCCTGGGACAGGGACTCCTGGCTCGGGCACGGGCCCTCCACAGCGGCAGCCTCGCCTTCCCGCAGAGCAGGCCCACAGGGGGTCCTCTCCTGGGGGCCCCTGGCCAGTTCTTGGCTATTGCC 21 0.68488082811203 0.85292352269439 0.730418327194949 Y Y 3.00822273295264 2.94955489687844 2.94955489687844 1 0.0 0.0 Y 0.0 N N 3953 2358 ENSG00000070444 ENSG00000127804 - + 17 17 2304412 2415185 coding coding MNT METTL16 2287354 2319343 - - 0.0 2298748 2323551 + - N - 1.50006184830836 N SA503 1 0.30597014925373106 1.0 1 0 1 Y Y 0.30597014925373106 0.0 7 1.18951340927529 1.34929879261078 1.34929879261078 1.18951340927529 4 - 13 0.925976650003402 hTERT 0.50 694752 CTCACCAACTTGCCGCACACAGACTTCACCCTGTGCAAGTGCATGATCGACCAGGCACATCAAGAAGAACGGCCAATCCGACAGATTTTGTACCTCGGGGACCTGCTGGAGACCTGCCATTTCCAGGCCTTCT|GGACCTTCACGGCATGGTGCAACTCCCACCTGCGGAAGGCAGGCACACAGATCGAGAACATTGATGAGGACTTCCGAGACGGGCTCAAGCTCATGCTGCTCCTGGAGGTCATATCAGGGGAGCGGTTACCTAAGCCGGAGCGGGGGAAGATGAGAGTGCACAAAATCAACAATGTGAACAAAGCGCTG 14 1.0 0.3947710527004389 0.747672038576778 Y Y 3.4210491438586 3.6659225983548303 3.4210491438586 0 0.992504553308738 0.0 Y 0.0 N Y 7086 66579 ENSG00000178982 ENSG00000130402 + - 19 19 39127595 39222223 coding intron EIF3K ACTN4 39109735 39138289 + + 0.0 39116742 39191240 + - N - - N SA503 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 5 1.1007437518666898 1.42031451853766 1.42031451853766 1.1007437518666898 4 - - 0.984033321594708 hTERT 0.50 590445 AAGAGCTATGAGCAACTGAAGGAAAAGCTGTTGTTTGCCATAGAAGAAACAGAAGGATTTGGACAAGAGTAACTTCTGAGAACTTGCACCATGAATGGGCAAGAACTTATTTGCAATGTTTGTCCTTCTCTGCCTGTTGCACATCTTGTAAAATTGGACAATGGCTCTTTAGAGAGTTATCTGAGT|ACACTCCTGGAAGGAGAACCAAATCCTTCCTCACTGAAGAGCAGCTACTGTGGAATGAAACTTTGGAGTTAGATCATCGTTGAATCCAGCAAGCTACAGTGCCTGGGAGAAACAGCATTTATAAAGTATCGAGGTTACCGATACTTCCCTGAAGCTACCGGAGAT 16 1.0 0.4145002937154961 0.26434323116089603 Y Y 3.56488607910057 3.38759559906577 3.38759559906577 0 0.0 0.0 Y 0.0 N N 2191 4794 ENSG00000078747 ENSG00000125971 + - 20 20 33099198 33128762 utr3p upstream ITCH DYNLRB1 32951041 33104214 + + 0.0 33095713 33102984 + - N - - N SA503 1 0.0 1.0 1 0 2 N Y 0.0 0.0 11 1.29603699816562 1.44694541576024 1.44694541576024 1.29603699816562 4 - - 0.988326326533998 hTERT 0.50 590495 TGTTTGCCATAGAAGAAACAGAAGGATTTGGACAAGAGTAACTTCTGAGAACTTGCACCATGAATGGGCAAGAACTTATTTGCAATGTTTGTCCTTCTCTGCCTGTTGCACATCTTGTAAAATTGGACAATGGCTCTTTAGAGAGTTATCTGAGT|AGGTGGAGGAGACACTGAAGCGACTGCAGAGCCAGAAGGGAGTGCAGGGAATCATCGTCGTGAACACAGAAGGCATTCCCATCAAGAGCACCATGGACAACCCCACCACCACCCAGTATGCCAGCCTCATGCACAGCTTCATCC 6 1.0 0.8368986428787729 0.992840624759614 Y Y 3.56488607910057 3.23523717573611 3.23523717573611 0 0.0 0.0 Y 0.0 N N 2191 4794 ENSG00000078747 ENSG00000125971 + - 20 20 33099198 33128762 utr3p coding ITCH DYNLRB1 32951041 33104214 + + 0.0 33095713 33114077 + - N - - N SA503 1 0.0 1.0 1 0 2 N Y 0.0 0.0 6 0.763419053713994 1.02085106019895 1.02085106019895 0.763419053713994 4 - - 0.982476286482181 hTERT 0.50 364182 AACCCATGAGATGCAAGATGGGATGCCAGTGACATCAAATGAGGAAGATTCATATCTCCTGATGCTCCATGTGTAAGAATTATTCCATATGTTAAGCTCTTGTTAGGTACCAAACAAACAGCATCTAGTAATTTATTTCCAAAAGGTATTTTTAATTTAACCT|CTTCATCGTGATCTTTCGCCCATTTAAGTTTTTCTAGCAGATCGCTCAGGTTGCTCTTAACTGGAATGTAGTGTTTCCAGGGCTGCAGCTCATTGTAAAAATGTTCATAGTAGATGGAATCCTGCTTCAGCACAACACTGTCACCAACTAGCAAATATGGCAGGCGATAAGCTGCTACAGTGCCATC 28 1.0 0.795548038536562 0.723611334671346 Y Y 3.01767223767317 3.3196113970202297 3.01767223767317 0 0.0 0.0 Y 0.0 N Y 925 607 ENSG00000151287 ENSG00000134901 - + 13 13 103426161 103451357 utr5p coding TEX30 KDELC1 103418340 103436631 - - 0.0 103421891 103441362 + - N - 0.539655157297334 N SA503 2 0.0 1.29411764705882 1 5 1 N Y 0.0 0.0 17 1.42031451853766 1.7221313537269198 1.7221313537269198 1.42031451853766 4 - 1.47058823529412 0.910198834297114 hTERT 0.50 72539 CTCCAGGAGCGTCTTTCTCAGGAATGCCCGATCAAGGAGGTGGTGCTTTATGTCAAAGAAGAAATGAAGAGGAATGATCTTCCAGAAACAGCAGTGATTGGTCTTCTGTGGACATGTATAATGAACGCTGTTGAGTGGAACAAGAAGGAAGAACTTGTTGCAGAGCAGGCTCTGAAGCACCTGAAG|TTGGTTAGTCTGCTGCTAATTGGAATTGCTGCGTGGGGCATTGGCTTCGGGCTGATTTCCAGTCTCCGAGTGGTCGGCGTGGTCATTGCAGTGGGCATCTTCTTGTTCCTGATTGCTTTAGTGGGTCTGATTGGAGCTGTAAAACATCATCAGGTGTTGCTA 7 0.518995677606674 0.288286885871375 0.26264912513015604 Y Y 3.4937534244795 3.4571608175836404 3.4571608175836404 0 0.0 0.0 Y 0.0 N Y 5274 2461 ENSG00000136261 ENSG00000106537 + - 7 7 16746148 16824161 coding coding BZW2 TSPAN13 16685756 16793160 + + 0.0 16736686 16815836 + - N - - N SA503 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 7 1.26052913520218 1.2694061009430402 1.2694061009430402 1.26052913520218 4 - - 0.906898479232867 hTERT 0.50 595770 CATCCGCAGAGATGCCCCTGCTGGCCGCAAAGTGGGTCTCATTGCTGCCCGCCGGACTGGACGTCTCCGGGGAACCAAGACTGTGCAGGAGAAAGAGAACTAGTGCTGAGGGCCTCAATAAA|GCCAAATAGTTGCATCACATGTATCTAATCCGAGAGTCTCATGCTTCTGGTAGCTCCTCAGTGACCAGCTCCTGCTCACTGCCCTCAGAAAGCCCAACCCTCAGGCAATGGCGGCCTTGTTCCTGTCTGCCCCACCCCAGGCCGAGGTGACCTTCGAGGACGTGGCTGT 12 1.0 0.883274533169657 0.544295761778228 Y Y 3.40744620240479 3.6759318169590096 3.40744620240479 1 0.0 0.0 Y 0.0 N Y 66081 702 ENSG00000161016 ENSG00000196378 + - 8 8 146017972 146012730 utr3p utr5p RPL8 ZNF34 146015150 145997611 - - 0.0 146015170 146005665 - + N - - N SA503 4 0.0 2.8 2 5 1 Y Y 0.0 0.0 5 0.8344347796408771 1.02972802593981 1.02972802593981 0.8344347796408771 4 - - 0.947332461374131 hTERT 0.50 72181 GCGGTCTTGACTCTGTTCGTCACTTCTTTGATTGGGGCTTTGATCCCTGAACCAGAAGTGAAAATTGAAGTTCTCCAGAAGCCATTCATCTGCCATCGCAAGACCAAAGGAGGGGATTTGATGTTGGTCCACTATGAAGGCTACTTAGAAAAGGACGGCTCCTTATTTCACTCCAC|GATGGCTGCAGCTCCTCCAAGTTACTGTTTTGTTGCCTTCCCTCCACGTGCTAAGGATGGTCTGGTGGTATTTGGGAAAAATTCAGCCCGGCCCAGAGATGAAGTGCAAGAGGTTGTGTATTTCTCGGCTGCTGATCACGAACCGGAGAGC 14 0.975409425053828 0.71532634839314 0.544269931049681 Y Y 3.57489529770476 3.58337693299909 3.57489529770476 2 0.993397674042966 0.0 Y 0.0 N Y 1685 4807 ENSG00000106080 ENSG00000136193 + - 7 7 30066300 30029905 coding coding FKBP14 SCRN1 30050203 29959719 - - 0.0 30065928 30008684 - + N - - N SA503 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 8 1.42031451853766 1.3936836213150805 1.42031451853766 1.3936836213150805 4 - - 0.988354449982336 hTERT 0.50 108384 GTGCGGAACCTGCAAAGTGAGGTGGAGGGAGTTAAGAATATTATGACCCAGAATGTGGAGCGGATCCTGGCCCGGGGGGAAAACTTGGAACATCTCCGCAACAAGACAGAGGATCTGGAAGCCACA|GCAGGAATAGAGTTGGAGCGGTGCCAGCAGCAGGCGAACGAGGTGACGGAAATTATGCGTAACAACTTCGGCAAGGTCCTGGAGCGTGGTGTGAAGCTGGCCGAACTGCAGCAGCGTTCAGACCAACTCCTGGATATGGTG 22 0.448553238623285 0.7562992454596039 0.6817849203982429 Y Y 3.52567938596249 3.49268050191626 3.49268050191626 2 0.9920931058990758 0.0 Y 0.272565742714996 N Y 7284 314 ENSG00000118640 ENSG00000168899 + - 2 2 85809154 85820535 coding coding VAMP8 VAMP5 85788685 85811531 + + 0.0 85806290 85818848 + - N - 0.0188031225123899 N SA503 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 7 1.02085106019895 1.12737464908927 1.12737464908927 1.02085106019895 4 - 0.428571428571429 0.992375513723851 hTERT CGHSA0565 0.50 106244 GACTCGAGATGCGAGGTGGGCGGGGGCAGGCTGAAAGTTGGAGCAAGCAGGAAGTGAACTGAGGGCCACCCTGGGAGGAAGCCGACTAGGCGAATTCACTTACTGACCGGCCTGGGCTGCTCTGAGACATGGAGGAAGCCAGTGAAGGTGGAGGAAATGATCGTGTGCGGAACCTGCAAAGTGAGGTGGAGGGAGTTAAGAATATTATGACCCAGAATGTGGAGCGGATCCTGGCCCGGGGGGAAAACTTGGAACATCTCCGCAACAAGACAGAGGATCTGGAAGCCACA|GCAGGAATAGAGTTGGAGCGGTGCCAGCAGCAGGCGAACGAGGTGACGGAAATTATGCGTAACAACTTCGGCAAGGTCCTGGAGCGTGGTGTGAAGCTGGCCGAACTGCAGCAGCGTTCAGACCAACTCCTGGATATGAGCTCAACCTTCAACAAGACTACACAGAACCTGGCCCAGAAGAAGTGCTGG 18 8.54130757863914e-09 0.661920190654168 0.691577575273502 Y Y 3.52567938596249 3.49268050191626 3.49268050191626 0 0.994720017636684 0.0 Y 0.0 N Y 7284 314 ENSG00000118640 ENSG00000168899 + - 2 2 85809154 85820535 coding coding VAMP8 VAMP5 85788685 85811531 + + 0.0 85806290 85818848 + - N - - N SA503 2 0.0 1.125 1 1 2 Y Y 0.0 0.0 8 0.9853431972355028 1.48245327872369 1.48245327872369 0.9853431972355028 4 - - 0.9836241746151312 hTERT CGHSA0565 0.50 144028 AGGATTATATTCATCGAATTGGAAGAACTGCTCGCAGTACCAAAACAGGCACAGCATACACTTTCTTTACACCTAATAACATAAAGCAAGTGAGCGACCTTATCTCTGTGCTTCGTGAAGCTAATCAAGCAATTAATCCCAAGTTGCTTCAGTTGGTCGAAGACAGAGGTTCAG|GTGCCTTGGAACACTATGTTAATTGCCTGGATCTGGTAAACAAGAGGCTACCTTATGGCCTTGCTCAGATTGGAGTGTGTTTTCATCCTGTTTTTGACACTAAGCAGATACGAAATGGTGTTAAAAGTATTGGTGAGAAGACTGAAGCTTCGTTAGTATGGTTTACTCCTCCGAGAACTTCAAACCAG 36 0.9962301134848228 0.9094839741106692 0.49064485982998 Y Y 3.5852752386695297 3.61041498203738 3.5852752386695297 0 0.0 0.0 Y 0.0 N Y 26344 478 ENSG00000108654 ENSG00000256525 + - 17 17 62504317 62493154 coding coding DDX5 POLG2 62495734 62473902 - - 0.0 62496667 62489138 - + N - - N SA503 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 12 1.56234597039143 1.6333616963183102 1.6333616963183102 1.56234597039143 4 - - 0.990545530611473 hTERT 0.50 499869 GACATCCCAGGAATGGGTCTTCCAGATGCTATCGCGACAGAACAATTACACCGTCAACAACAAGAGAAATGGAGTGGCCAAAGTCAACATCTTCTTCAAGGAGCTGAACTACAAAACCAATTCTGAGTCTCCCTCTGTCAC|GGTGCTCCTGGAGCTGTTGGTGGGAATATACCCCTCAGGGGTTATTGGACTGGTCCCTCACCTAGGGGACAGGGAGAAGAGAGATAGTGTGTGTCCCCAAGGAAAATATATCCACCCTCAAAATAATTCGATTTGCTGTACCAAGTGCCACAAAGGAACCTACTTGTACAATGACTGTCCAGGCCC 23 0.8608401098892191 0.960395157134448 0.220724730979428 N Y 3.45976132345673 3.52680574168821 3.45976132345673 0 0.992929423975091 0.0030487804878047697 Y 0.0030487804878047697 N Y 22805 12682 ENSG00000111319 ENSG00000067182 + - 12 12 6486896 6451280 coding coding SCNN1A TNFRSF1A 6456009 6437923 - - 0.0 6457893 6443410 - + N - - N SA503 1 0.0 1.0 1 0 1 Y N 0.0 0.0 23 1.29603699816562 1.49133024446455 1.49133024446455 1.29603699816562 4 - - 0.9873503424847968 hTERT CGHSA0430 0.50 426845 GAAGTCTGAAGGCATACGGCGAGCTTCCAGAGCATGCTAAAATCAATGAAACTGATACATTTGGTCCTGGAGATGATGATGAAATTCAGTTTGATGACATTGGAGATGATGATGAAGATATTGATGAC|GCATGGAGGGATTTTTGAAATCAGATGAGAGGCAGAGATTGGCCAAAGAAAGACGAGAAGAAAGAGAAAAATGTCTGGCTGCTCGGGAGCAACAGATCCTGGAGAAACAGAAAAGAGCCAGGCTGCAGTACGAAAAGCAAATGGAGGAGCG 17 1.0 0.880288144258678 0.492996574884833 Y Y 2.84284912476227 2.89359261981439 2.84284912476227 1 0.0 0.0 Y 0.0 N Y 23912 817 ENSG00000173674 ENSG00000184368 + - X X 20159962 20135035 coding coding EIF1AX MAP7D2 20142636 20024831 - - 0.0 20148634 20082923 - + N - - N SA503 3 0.0 2.1666666666666696 2 6 1 N Y 0.0 0.0 6 0.976466231494643 1.24277520372045 1.24277520372045 0.976466231494643 4 - - 0.912191377707236 hTERT 0.50 693705 ACATCACCACCAAGCACATGCTACCCACGGTTCTGCGCATGGCTGGGGACCCGGTTGCCAATGTCCGCTTCAATGTGGCCAAGTCTCTGCAGAAGATAGGGCCCATCCTGGACAACAGCACCTTGCAGAGTGAAGTCAAGCCCATCCTAGAGAAGCTGACCCAGGACCAGGATGTGGACGTCAAATACTTTGCCCAGGAGGCTCTGACTG|ACGTTGACCCTCCTAGTGAGATCCCAGGTCACAAACCGTGGAGCGGCTCCAGCCTGACTGGCAAGTGTGGCTTGCAAAACGCGGAAAACCGAGACACGCCCAGAGATAGGAGGAGGGAAGTGCAGGCCCCGTCCAATAAGTATTCAGGCCCCGCCCGCCACGTCGCTGGCCACGCCCC 20 0.9071065542672428 0.602975724233589 0.707428725787812 N Y 3.61936062564813 3.55128313764676 3.55128313764676 0 0.0 0.0 Y 0.0 N N 24797 860 ENSG00000105568 ENSG00000196214 + - 19 19 52730687 52795977 coding upstream PPP2R1A ZNF766 52693274 52772824 + + 0.0 52729061 52772628 + - N - - N SA503 1 0.0 1.0 1 0 1 N N 0.0 0.0 7 1.26052913520218 1.57122293613229 1.57122293613229 1.26052913520218 4 - - 0.989193769185667 hTERT 0.50 435535 CTCAGGCAAAATGGCAATACCTGTGCTTTGGAAGTTTCTGGAGAAGTATCCTTCAGCTGAGGTAGCAAGAACCGCAGACTGGAGAGATGTGTCAGAACTTCTTAAACCTCTTGGTCTCTACGATCTTCGGGCAAAAACCATTGTCAAGTTCTCAG|GTTCTGTAACTCCAAACCATGGCACCCTGCCATAAGCGGGGCAGAACATACCCAACACCTCTATCTGGCCACAGCTCACTTTGGTTCTTCCTAACCCTCTGGAGGAGGCAGGGCCTATTTTTCCTATGAGAAAACTGAGGCCTAGAGATATGGAGACCTGCGGAAGATCCCACATTTCACGGGAAAACCGGAGACTTTCTA 40 0.8907167443383059 0.722634930878616 0.38316940864775895 Y Y 3.57063922744582 3.6025651889288097 3.57063922744582 8 0.980699376524804 0.0 Y 0.0 N N 1162 330 ENSG00000129071 ENSG00000172771 + - 3 3 129158878 129147494 coding upstream MBD4 EFCAB12 129149787 129120164 - - 0.0 129151941 129147883 - + N - - N SA503 1 0.492610837438424 1.0 1 0 1 N Y 0.0 0.492610837438424 17 1.3581757583516398 1.7931470796538 1.7931470796538 1.3581757583516398 4 - - 0.9745105734608872 hTERT 0.50 458332 GGGCGTGCCAGTTTATAAAGGGAGAGAGCAAGCAGCGAGTCTTGAAGCTCTGTTTGGTGCTTTGGATCCATTTCCATCGGTCCTTACAGCCGCTCGTCAGACTCCAGCAGCCAAGATGGTGAAGCAGATCGAGAGCAAG|GAGGAAACACACCTGCTCCTGCAGAATCGATGGTCAATGCTGTTTGGATTAACAAGGAGAGAAGAAGCTCACTGTCCCTGGAAGAGGCAGATTCTGAGGTGGAGGGGAGGCTGGAGGAGGCTGCCCAGGGCTGCCTTCAGGCCCCCAAGTCTCCATGGCACACGCACCTGGAGATGCATTGTTTGGTCCAAACCTCC 5 0.5953751290983941 0.686757850353364 0.403967153852626 Y Y 3.44247137319745 3.6491271616355 3.44247137319745 0 0.0 0.0 Y 0.0 N Y 25613 1349 ENSG00000136810 ENSG00000188959 + - 9 9 113018920 112970469 coding coding TXN C9orf152 113006091 112952328 - - 0.0 113018692 112963754 - + N - 15.204802948989 N SA503 1 0.0 1.0 1 0 1 N Y 0.0 0.0 5 0.8344347796408771 1.64223866205917 1.64223866205917 0.8344347796408771 4 - 2.4 0.966818983773877 hTERT 0.50 73115 CCTCACCTACTGCTATTCCATCGACCTCTCAGAGCGAGTGGCACTGAAGCTCGATCAGACCTTCCCCTTCAGCCTGATGAGGAGGATATCCGTGTTCAAGTACGTCTCAGGGTCTTCAGCCGAGAGGAGGGCAGCCCAGAGCCGGAA|TTTCATGATCAACATGGGAGACTCCCACGTGGACACCAGCTCCACCGTGTCCGAGGCGGTGGCCGAAGAAGTATCTCTTTTCAGCATGACGGACATGATTCTGTTTTCGCTCATCGTGGGTCTC 13 0.476088664742807 0.76485469164928 0.764001279124725 Y Y 3.1258962026266803 3.45872825368684 3.1258962026266803 2 0.0 0.0 Y 0.0 N Y 7373 3565 ENSG00000005486 ENSG00000127948 + - 7 7 75518244 75616173 coding utr5p RHBDD2 POR 75471920 75528518 + + 0.0 75513166 75583307 + - N - - N SA503 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 5 1.15400554631185 0.8788196083451791 1.15400554631185 0.8788196083451791 4 - - 0.925261388854208 hTERT 0.50 694417 GCGGAGCGGGTGCGGCGAGGAGCTGTAGGTTTCCTGAGCCGGAGACATGGCCCGCCGTGCGGCGCTCGAGGCGGCCTGGAAGAGCAGAGACAGGGCTGCCGCTGCGGGTCGTGACTCCAGAGTTGGGGCGTCTCTTCTAAGCTCCA|CCAACTGTAGTCATGGTGACTACCGCCCACCAGAAGGACTCAGGGATGCTAGTGAAATGGGAGTCCACCCGGTCAACTTCGGCAAAGTAGACGGCGCTGGAAAAGAGGACCACACCGATGAAGAGGAAAAAGATGAGGAGGCCCAGCTCACGCATGGAGGCCCGAAGCGTCTGGCCCAAGATTTGCAGGCCCTTTGAGTGCC 25 1.0 0.7415116137561509 0.764588206845961 Y Y 3.64656650855576 3.67849247003875 3.64656650855576 1 0.0 0.0 Y 0.0 N N 243 337 ENSG00000196337 ENSG00000104848 - + 19 19 49562117 49576198 utr5p coding CGB7 KCNA7 49557531 49570675 - - 0.0 49559809 49573612 + - N - 0.197001055180425 N SA503 1 0.0 1.0 1 0 1 N Y 0.0 0.0 14 1.3848066555742198 1.71325438798606 1.71325438798606 1.3848066555742198 4 - 0.285714285714286 0.986493062048736 hTERT 0.50 540167 GTAGCCCCGCCCCTACTAGCTCCGCCCACAGCTGTGTCCGGAAGCAGCAAGCGTGCCTGGGCAGAGACCCCCAGAGTGTAAAGAGGTCCTGGGACAGGCTTTGCACGTTCCACAAGAG|CAGTTCTGTCTGCACAATCCCCGGCCACAGAGACACACAGCTGACCCCATGGCGCCGCAGCTCGTGGGCACAGTCAGCAGCCAGCTTGTCACACTGTGGAGAGGCGGAAGGCAGGGTA 2 0.0632465396820005 0.317237865000629 0.5246693197703329 Y Y 3.6000045358490698 3.5314325343077404 3.5314325343077404 0 0.9915611814345991 0.0 Y 0.0 N N 3148 3520 ENSG00000100949 ENSG00000157379 - + 14 14 24740945 24769039 utr5p coding RABGGTA DHRS1 24734744 24759804 - - 0.0 24740516 24761444 + - N - 2.4304132455039 N SA503 1 0.0 1.0 1 0 3 N Y 0.0 0.0 6 0.7900499509365749 1.02972802593981 1.02972802593981 0.7900499509365749 4 - 81.1666666666667 0.975515613666622 hTERT 0.50 1874 CGTGGAGTGTGGGGATGAAGTCCTGTACTGCTATGAAGTGCAGTTGGAAAGCAAGGTGCGGCGGAAAGGCCTGGGGAAGTTCCTCATACAGATCCTGCAGCTCATGGCCAACAGCACACAGATGAAGAAGGTTATGTTAACAGTATTTAAACACAATCATGGTGCCTACCAGTTCTTCAGAGAAGCGTTGCA|GAATTGGCCGTTGGGCTTACCTCCTGCTTCGTGACCTTCCTCCTGCCAGCGGGCTGGATCCTGTCACACCTGGAGACCTACAGGAGGCCAGAGTGAAGGGGTCCGTTCTGTCCCTCACACTGTGACCTGACCAGCCCCACCGGCCCATCCTGGTCATGTTACTGCATTTGTGGCCGGCCTCCCCTGGATCATG 26 0.4558508543725561 0.984621103457523 0.5880565710055939 N Y 3.86529765513778 3.5514509715161 3.5514509715161 4 0.0 0.0 Y 0.0 N N 1399 318 ENSG00000110583 ENSG00000256100 + - 11 11 63724800 63755818 coding intron NAA40 AP000721.4 63706431 63742092 + + 0.0 63721521 63743697 + - N - 87.183266299746 N SA503 1 0.0 1.0 1 0 1 N N 0.0 0.0 10 1.71325438798606 1.6067307990957298 1.71325438798606 1.6067307990957298 4 - 0.6 0.95986922999489 hTERT 0.50 540518 GAGTGGAATTAACTGCCCTATCCAAAAAGACAAGACCTATAGCTACCTGAATAAACTACCAGTGAAAAGCGAATATCCCTCTATAAAACTGGTGGTGGAGTGGCAACTTCAGGATGACAAAAACCAAAGTCTCTTCTGCTGGGAAATCCCAGTACAGATCG|CTCTGAGGACTGCTCAGCTGGCCCAGGCCCCCCTCCCCAGCAGCTGCCCCAGAACCATGGAGAGTCTGAGTGAACTACAGAACCCGCTGCTGCCCAGGAGCCCTGCCCATCTCCATGGCCCCTATCCCTACCCGGAGACCCCACCCAGCTGGTCCTGCCAGGAAA 65 0.8571335921271179 0.8395045674958141 0.565497269417305 N Y 3.56704550459619 2.99871737545823 2.99871737545823 0 0.0 0.00305810397553519 Y 0.0 N Y 19110 892 ENSG00000119655 ENSG00000183379 + - 14 14 74960880 74892805 coding utr5p NPC2 SYNDIG1L 74942895 74872596 - - 0.0 74947405 74876504 - + N - - N SA503 1 0.0 1.0 1 0 1 Y N 0.0 0.0 35 1.44694541576024 1.25165216946132 1.44694541576024 1.25165216946132 4 - - 0.9752658384823908 hTERT 0.50 498872 GGCTGAGGAGCGTGGGGAGCTGGCGCTCAAGGATGCTCGTGCCAAGCAGGAGGAGCTGGAAGCCGCCCTGCAGCGGGGCAAGCAGGATATGGCACGGCAGCTGCGTGAGTACCAGGAACTCATGAGCGTGAAGCTGGCCCTGGACATCGAGATCGCCACCTACCGCAAGCTGCTGGAGGGCGAGGAGAGCCG|GTGTCCTGGAACCAGTCCCCCATGAGTATCGATGAATGACTACATAAGCCACAGAGCCTGTGTGTGCCCTTCCTGGATCTCAGCATTCATTCTCCAGTCCGTTTGTTCATGTAGAGTCCCTGG 19 1.0 0.744090586744676 0.8229286974082671 Y Y 3.44143830342756 3.47655676017605 3.44143830342756 0 0.9918956468045692 0.0 Y 0.983791293609139 N N 151122 533 ENSG00000135480 ENSG00000170442 + - 12 12 52645970 52702947 coding intron KRT7 AC021066.1 52626304 52643084 + + 0.0 52639416 52663443 + - N - 0.027561545198015 N SA503 9 0.43 2.125 1 2 2 N Y 0.0 0.43 8 1.62448473057745 0.8876965740860391 1.62448473057745 0.8876965740860391 4 - 0 0.948584631273122 hTERT 0.50 426816 CCTGTAGCCTGTAATACCAGCTGTGGGTACTACTCTCAGTGTTGGAGATCATCAAAATACAATTGGACCAGACCCTTTGGAAATAATTCTGTGTCTCAAATGCCCTGTGGAGCACACACTTAATCAGTTGATGGCTATGGAATTTTCCAACATCAGCTAAAGAGAAGG|CCGAGTGGTCCTCCAGAGCAAAGGCCAGCCTTCCTTCCAGCTGTCTGGCCAAGGAGCTTCAGGATCTTCTAGCAAGCACCCCAGAGGCAGAAGACTGTCATCCATGGTACAGGACTGCGGCGAACAAGCTGACTGCGCAGTCACGTGGGGCTGACGGTGGGTCATGTGACCAGGCTCTGCA 14 1.0 0.700253399368213 0.87280875625223 Y Y 3.57167229721571 3.3890833295822698 3.3890833295822698 10 0.99406462585034 0.0 Y 0.353044217687075 N N 217 401 ENSG00000125962 ENSG00000198908 + - X X 101969594 102008468 intron upstream ARMCX5 BHLHB9 101854096 101975616 + + 0.0 101860581 101975462 + - N - - N SA503 1 0.0 1.0 1 0 1 N Y 0.0 0.0 6 1.3848066555742198 1.3226678953882 1.3848066555742198 1.3226678953882 4 - - 0.943423011418377 hTERT 0.50 391983 GTTCCAGGGGAAAGCTGCCATTGTGGAGAAGTTGTCTAGCCTTCCGTTCCAGAAAATTCAGCACAGCATCACCGCGCAGGACCATCAGCCCACTCCAGATAGCTGCATCATCAGCATGGTTGTGGGCCAGCTTA|AGGCCCCAGTGCAGAGAGCCCACGGCCATCCAGTGCCTACAATGGGGACCTCAATGGACTTCTGGTCCCAGACCCGCTCTGCTCAGGTGATAGTACCTCAGCAAACAAGACTGGTCTTCGGACCATGCCACCCATTAACCTGCAAGAGAAGCAGGTCATGTGAGTACCTAGGA 4 0.919391063362472 0.312479619848899 0.704076831760782 Y Y 3.48015048302568 3.36720643949681 3.36720643949681 1 0.992561542934677 0.0 Y 0.0 N Y 8365 3963 ENSG00000102898 ENSG00000038358 + - 16 16 67906470 67918406 coding intron NUTF2 EDC4 67880635 67906926 + + 0.0 67902502 67909848 + - N - 0.415366670051699 N SA503 3 0.0 1.4 1 1 1 N Y 0.0 0.0 5 1.11849768334841 0.781172985195715 1.11849768334841 0.781172985195715 4 - 11.8 0.912993958391046 hTERT 0.50 139649 GAAGGCTCAGCTTCCCGCCAGAAAGCCCTGAGCCTAGTAAGCTGTTTCGCGGGGGGCGTCTTTTTGGCCACTTGTCTCCTGGACCTGCTGCCTGACTACCTGGCTGCCATAGATGAGGCCCTGGCAGCCTTGCACGTGACG|AGCCCCCTCCACTCACCTTTGGATTCATCTCGGAGCACTCGGCACCATGGGCTGGTGGAACGGGTGCAGCGAGATCCTCGAAGAATGGTGTCCCCACTTCGCCGATACACCCGCCACATTGACAGCTCTCCCTATAGTCCTGCCTACTTATCTCCTCCCCCA 14 1.0 0.7757776526416579 0.893575357756086 Y Y 3.56914214935951 3.3435942794388103 3.3435942794388103 0 0.992931131019037 0.0 Y 0.0 N Y 5320 2716 ENSG00000143570 ENSG00000160741 + - 1 1 153940188 153931101 coding coding SLC39A1 CRTC2 153931575 153920145 - - 0.0 153934696 153927465 - + N - - N SA504 1 0.0 1.0 1 0 3 Y Y 0.0 0.0 8 1.1572425370648798 1.2151046639181202 1.2151046639181202 1.1572425370648798 4 - - 0.978406521497804 hTERT CGHSA0331 1.0 139648 TTCCCGCCAGAAAGCCCTGAGCCTAGTAAGCTGTTTCGCGGGGGGCGTCTTTTTGGCCACTTGTCTCCTGGACCTGCTGCCTGACTACCTGGCTGCCATAGATGAGGCCCTGGCAGCCTTGCACGTGACG|TTACAGGCCCAAAAACTGCGACTGGCATACACAAGGAGCTCTCATTATGGTGGGTCTCTGCCCAATGTTAACCAGATTGGCTCTGGCCTGGCCGAGTTCCAGAGCCCCCTCCACTCACCTTTGGATTCATCTC 15 0.5868184279516179 0.709774994481377 0.580277701436841 Y Y 3.56914214935951 3.43681151080804 3.43681151080804 2 0.99233682983683 0.0 Y 0.961684149184149 N Y 5320 2716 ENSG00000143570 ENSG00000160741 + - 1 1 153940188 153931101 coding coding SLC39A1 CRTC2 153931575 153920145 - - 0.0 153934696 153927642 - + N - - N SA504 1 0.0 1.0 1 0 3 Y Y 0.0 0.0 5 1.05116197116726 1.11866778582938 1.11866778582938 1.05116197116726 4 - - 0.9821846758864448 hTERT CGHSA0331 1.0 139672 CGGCCAGGAGCTAACCATGAAGGCTCAGCTTCCCGCCAGAAAGCCCTGAGCCTAGTAAGCTGTTTCGCGGGGGGCGTCTTTTTGGCCACTTGTCTCCTGGACCTGCTGCCTGACTACCTGGCTGCCATAGATGAGGCCCTGGCAGCCTTGCACGTGACG|GGCGTCCCCCTGGATACCAGTAAACTGTCCACTGACCAGCGGTTACCCCCATACCCATACAGCTCCCCAAGTCTGGTTCTGCCTACCCAGCCCCACACCCCAAAGTCTCTACAGCAGCCAGGGCT 7 1.0 0.414198330752018 0.484310806827116 Y Y 3.56914214935951 3.58064844605001 3.56914214935951 0 0.9920280701754391 0.0 Y 0.0 N Y 5320 2716 ENSG00000143570 ENSG00000160741 + - 1 1 153940188 153931101 coding coding SLC39A1 CRTC2 153931575 153920145 - - 0.0 153934696 153921860 - + N - - N SA504 1 0.0 1.0 1 0 3 Y Y 0.0 0.0 5 0.935437717460774 0.97401246869627 0.97401246869627 0.935437717460774 4 - - 0.989340957116583 hTERT CGHSA0331 1.0 321348 TGGTCCACGCCTTCCTCATTCACACCTTGAGGGCCCCGAATACTGAGGACACGGGCCTTTGCCGAGTGCTGTACTCCTGCGTCTTCGGTGCTGAGAAGTCACCTGATGACCCACGGCCGCATGGTGCCGAGAGGGACAGGCTTCTCCGGAAGGAACAGATTTTAGCTGTGGCCAG|TCTCGTTTCCTCTCAGTCCATCCACCCTTCATGGGGCCAGAGCCCTCTCTCCAGAATCTGAGCAGCAATGCCGTTTGCTGAAGACAAGACCTATAAGTATATCTGCCGCAATTTCAGCAATTTTTGCAATGTGGATGT 12 0.588007198737683 0.81993728012182 0.540415763149521 Y Y 3.78105657260285 3.20654356231198 3.20654356231198 2 0.992776700821564 0.0 Y 0.992776700821564 N Y 998 4385 ENSG00000125843 ENSG00000088888 + - 20 20 3805949 3849280 coding utr5p AP5S1 MAVS 3801178 3827487 + + 0.0 3802940 3835205 + - N 0.698755378630834 0.66543342209844 N SA504 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 5 1.34047260543348 0.858288214989783 1.34047260543348 0.858288214989783 4 17.8 38.2 0.958773273593514 hTERT 1.0 385656 GCTACTACTTCGGGGCCTCCGCCGGCACCGGCGACCTGTCTGACAATCATGACATCATCTCCATGAAGCTGTTCCAGCTGATGGTGGAGCACACGCCCGACGAGGAGAGCATCGACTGGACCAAGATCGAGCCCAGCGTCAACTTCCTCAAGTCGCCCAAAGA|GGCCGAGCATGGTTATGCGTCCCTGTGCCCGCATCGCAGTCCAGGCCCCATCCACAGGAGGAAGAAGCGACCCCCCCAGGCTCCTGGCGCGCAGGACAGCGGGCGGAGGGCCCAGTTGAAGCGGTGCCTGGAG 4 1.0 0.315045760834528 0.159702395867663 Y Y 3.36617336972692 3.4816780663355296 3.36617336972692 0 0.992506518822308 0.0 Y 0.992506518822308 N Y 7207 4646 ENSG00000169223 ENSG00000213347 + - 5 5 176778853 176739758 coding coding LMAN2 MXD3 176758563 176728462 - - 0.0 176761285 176738485 - + N - - N SA504 1 0.043956043956044 1.0 1 0 1 Y Y 0.0 0.043956043956044 5 1.49477161037546 0.8775755906075309 1.49477161037546 0.8775755906075309 4 - - 0.974784636328284 hTERT CGHSA0638 1.0 1161 TCAGTAGTTCTTCCGGAACTTCAGACAGATTCAGCCGAATACTCAAGCACATCTTGACCCAGAGGAGCTACTACCCACTCTACCCGCCCCAAGAAGACATGGCCATTGACTATGAGTCGTTCTATGTTTACGCACAGCTGCCTGTCACCCCAGATGTCCTCATCATCCCGTCAGAGCTGAGGTACTTCGTGAA|GCTCCTCAGCCCTGGACCGGGGACAAGTAACCCTCGGTGACAAGACCAAAGTGCACTGCTGCCCACACAGTTCCTACCTTTCTGGCTTCAATTCTTCAGAAGAGTTTGCCGTCCTTTGGGGAGAACGTGATTTTTGTTATCTCAGCCCACTGACTTCATTGATCTCTAATCTTTTTTAAT 23 0.9964404565050292 0.907051016861473 0.566471372155434 Y Y 3.71297908460148 3.53871326596283 3.53871326596283 0 0.0 0.0 Y 0.0 N Y 1096 2419 ENSG00000014138 ENSG00000149798 + - 11 11 65073060 65089900 coding utr5p POLA2 CDC42EP2 65029233 65082289 + + 0.0 65063461 65088015 + - N - - N SA504 1 0.0 1.0 1 0 1 N Y 0.0 0.0 10 1.79372593245056 1.69728905436182 1.79372593245056 1.69728905436182 4 - - 0.983762853963096 hTERT 1.0 63216 GGCCTCCCATGCTGTTGGGATTACAGCTATAAATTCATACAATTATCAGAGTTTGGTTTTGGTCAAGTCATAATTGTGAGTGAAGAACCATGGAAGGAGAACATTTCTTGCTCATCAACTACTTTCATAAAATCAACAATTTGCTTAA|GTGTTTGCTTCAGAATGTATACAGAAGATGAAGCTAGGAAAATAGGAGTGGTTGGCTGGGTGAAGAATACCAGCAAAGGCACCGTGACAGGCCAAGTGCAGGGGCCAGAAGACAAAGTCAATTCCATGAAGTCCTGGCTGAGCAAGGTTGGAAGCCCTAGTTCTCG 7 1.0 0.954570998251838 0.260287335062375 Y Y 3.09975389471248 3.5733677143949105 3.09975389471248 0 0.993264693264693 0.0 Y 0.993264693264693 N N 62 579 ENSG00000239235 ENSG00000170634 + - 2 2 54307601 54532437 intron coding AC008280.5 ACYP2 54197975 54342540 + + 0.0 54284497 54362590 + - N - - N SA504 1 0.16083916083916105 1.0 1 0 1 N Y 0.16083916083916105 0.0 7 1.37904735666898 1.6104958640819498 1.6104958640819498 1.37904735666898 4 - - 0.916233527340854 hTERT 1.0 84195 TTTCTTGCAGGGATTTTGGACCAGGGGGAGGGTGTCCTGATTATTTTCGATGAACCCCCAGTAGATAAAACTTACGAAGCTGCTCTGGAAACAATTCAGAACATGAGCAAAGTAGTGGATTCCCTCTACAACAAAGCCAAGAAACTGACAT|AGGCAGATCCAAGGGGGCAGCACGCTTCCCGGGAGCGCCCCCGCCTCCTCTCCGGGGCCGCCGCAGGCTCGGTGAGCGGTTTTATCCCTCCGGCCGGCAGGCTGGGCGCGCAGGGGCGCGAGCCCCCGCCCGGCGCGCAGCAGCAC 5 1.0 0.435980921818147 0.050214427441446 Y Y 3.5899953172448904 3.15575602456989 3.15575602456989 0 0.0 0.0 Y 0.0 N Y 11435 1799 ENSG00000108671 ENSG00000176749 + - 17 17 30810336 30818274 utr3p intron PSMD11 CDK5R1 30771279 30813637 + + 0.0 30807649 30814494 + - N 0.490324120035009 0.134618575980012 N SA504 1 0.241935483870968 1.0 1 0 1 N Y 0.0 0.241935483870968 5 1.17652991268262 1.1958172883003702 1.1958172883003702 1.17652991268262 4 159 5.4 0.963175986667488 hTERT 1.0 1185 GCTCTGGGATCTGCGCAAGCTTAAGAACTTTAAGACTTTGCAGCTGGATAACAACTTTGAGGTAAAGTCACTGATCTTTGACCAGAGTGGTACCTACCTGGCTCTTGGGGGCACGGATGTCCAGATCTACATCTGCAAACAATGGACGGAGATTCTTCACTTTACAGAGC|CCCACGATGTCGGCCAACGCCACACTGAAGCCACTCTGCCCCATCCTGGAGCAGATGAGCCGTCTCCAGAGCCACAGCAACACCAGCATCCGCTACATCGACCACGCGGCCGTGCTGCTGCACGGGCTGGCCTC 28 1.0 0.3669150789762721 0.471320250250485 N Y 3.58424216889964 3.53209488171704 3.53209488171704 6 0.0 0.0 Y 0.0 N Y 2240 835 ENSG00000110107 ENSG00000183134 + - 11 11 60674060 60623444 coding intron PRPF19 PTGDR2 60658202 60618413 - - 0.0 60665318 60621204 - + N - 38.1186104218362 N SA504 1 0.0 1.0 1 0 1 N N 0.0 0.0 13 1.6297832396996998 1.01258721993177 1.6297832396996998 1.01258721993177 4 - 0.230769230769231 0.9603903922183008 hTERT 1.0 275662 GGAAATCATAATCTAGGTACTCATATTCGGTGGCCTGTCTCCGGTCCCGGGCAAGCAGGGGACCCAAGGCTTTCTCGGCTTCATCTGCCCAGGTGTCCCACAGCTGCAAGCTGTTGCCAGGGCCCAGTAGGATCAGCAACAGGAGGAGTTGCAGAGGCATGGCAC|AGCAACAATCTCTTGTTTCCTGGGATCAATGACTCTCACTTTCTTGTCTTTGGAAGCTGTGCAGATCAGACTGCCATTCCGGTTCCAGCTCACATTGTAAATCATGTCTGAATGCATATCGTCCAAGTTTATAAGGGCTTCCCCTGTTCCCACATTCCAGATG 24 1.0 0.985941108508262 0.6228288907502829 Y Y 3.35926336043241 3.42360979693834 3.35926336043241 0 0.0 0.0 Y 0.0030395136778115198 N Y 5612 13395 ENSG00000110876 ENSG00000110880 - + 12 12 109027735 109125372 coding coding SELPLG CORO1C 109015686 109038885 - - 0.0 109018088 109052514 + - N - 2.12358200113786 N SA504 1 0.0 1.0 1 0 3 Y Y 0.0 0.0 9 1.37904735666898 1.50441529818434 1.50441529818434 1.37904735666898 4 - 98.7777777777778 0.9878086338704 hTERT 1.0 276019 CAGCATTTCTGGAGGCTCCGTTTCTGGCAGGAAATCATAATCTAGGTACTCATATTCGGTGGCCTGTCTCCGGTCCCGGGCAAGCAGGGGACCCAAGGCTTTCTCGGCTTCATCTGCCCAGGTGTCCCACAGCTGCAAGCTGTTGCCAGGGCCCAGTAGGATCAGCAACAGGAGGAGTTGCAGAGGCATGGCACCA|CACTGGCCGTGTCTGTGGTTTTCTTGGGGATGCTGATCAGGTCGCACTTCTTGTTTGCAGTGGGCTTGCTATCCAGAATGTTCTTCTTGACCACCTTGAGATCCCTGTTTTTGCCTGGAATGTACCCGTGCTTCAAGGAGATGAGGATTGGGTCTGCATTCTTGCCTTCGAACCACTCTTCTGCCTCCAGC 327 1.0 0.944698329897435 0.557952773691994 Y Y 3.41584813211242 3.44611852920956 3.41584813211242 0 0.0 0.0 Y 0.0025773195876288607 N Y 5612 13395 ENSG00000110876 ENSG00000110880 - + 12 12 109027735 109125372 utr5p coding SELPLG CORO1C 109015686 109038885 - - 0.0 109018088 109042381 + - N - 1.86527071954011 N SA504 1 0.0 1.0 1 0 3 N Y 0.0 0.0 195 1.9383812495836696 1.9383812495836696 1.9383812495836696 1.9383812495836696 4 - 3.36923076923077 0.9878086338704 hTERT 1.0 276020 ATATTCGGTGGCCTGTCTCCGGTCCCGGGCAAGCAGGGGACCCAAGGCTTTCTCGGCTTCATCTGCCCAGGTGTCCCACAGCTGCAAGCTGTTGCCAGGGCCCAGTAGGATCAGCAACAGGAGGAGTTGCAGAGGCATGGCAC|CTGGCAATCTCACATTTGTTAACATCAAGTCCCCTCTTGGGCATGTAACCCATCCCTCTCTGAGGCTCCTTGCTGCTGAATGTGTTGAGGTAGTGGACGTACGGGGATTCATCCGTGATCTCAAAATAGCGAATACTGCTGTCACCCTGTA 12 0.9818356912360292 0.7760051738687029 0.638769194088729 Y Y 3.35926336043241 3.52105259334297 3.35926336043241 0 0.0 0.0 Y 0.0 N Y 5612 13395 ENSG00000110876 ENSG00000110880 - + 12 12 109027735 109125372 coding coding SELPLG CORO1C 109015686 109038885 - - 0.0 109018088 109046048 + - N - 1.48029472088197 N SA504 1 0.0 1.0 1 0 3 Y Y 0.0 0.0 9 1.46584054694884 1.1861736004915 1.46584054694884 1.1861736004915 4 - 90.2222222222222 0.9878086338704 hTERT 1.0 139154 AGGAGATGTACATTCAGCAGAAGGTCCGAGTGCTGCTCATGCTGCGGAAGATGGGATCAAACCTGACAGCCAGCGAGGAGGAGTTCCTGCGCACCTATGCAGGGGTGGTCAACAGCCAGCTCAGCCAGCTGCCTCCGCACTCCATCGACCAG|GTTAACAAGCACAAGCCCTGGCTGGAGCCCACCTACCACGGCATAGTCACAGAGAACGACAACACCGTGCTCCTCGACCCCCCACTGATCGCGCTGGATAAAGATGCGCCTCTGCGATTTGCAGGTGAGATTTGTGGATTTAAAATTCACGGGCAGAATGTCCCCTTT 8 1.0 0.819968927191697 0.19129425964226604 Y Y 3.17564132302907 3.48912663185998 3.17564132302907 0 0.99344154779472 0.0 Y 0.0 N Y 5882 64298 ENSG00000178585 ENSG00000171603 + - 1 1 9970394 9884584 coding coding CTNNBIP1 CLSTN1 9908334 9789084 - - 0.0 9931245 9833452 - + N - - N SA504 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 10 1.47548423475772 1.6104958640819498 1.6104958640819498 1.47548423475772 4 - - 0.957575575248602 hTERT CGHSA0344 1.0 252152 GTCGTTTGGAATCTTACGTTAAAGAAGTTTTTGGTTCATCTCTTCCTAGTAATTGGCAAGACATCTCCCTGGAAGATAGTCGTCTAAAGTTCAATCTTCTGGCTCATTTAGCTGATGACTTGGGTCATGTAGTCCCTAACTCCAGACTCCACCAGATGTGCAG|GGTTTTGAGGTTTTGCTGAAGATATTCCTGAAGAATCATCCCAGGTGCCACACTAAAAAAATGATCCAGTTGACAGCTACCCCTGTGAGTGCACTTGTTGATGAGCCAGTGCATATCCGAGCTACAGGCCTGATTCCCTTTCAGATGGTGAGTTTTCAGGCATC 24 1.0 0.801768914934316 0.23926381525214704 Y Y 3.51207644450867 3.48912663185998 3.48912663185998 3 0.0 0.0 Y 0.0 N Y 1034 1547 ENSG00000136897 ENSG00000136881 + - 9 9 104160896 104145801 coding utr5p MRPL50 BAAT 104149915 104122699 - - 0.0 104152859 104133745 - + N - 70.7056173024932 N SA504 2 0.0 1.6363636363636398 1 7 1 N Y 0.0 0.0 11 1.5622774250375802 1.5912084884642 1.5912084884642 1.5622774250375802 4 - 0 0.915059956921141 hTERT 1.0 252073 CACCATCTGAAAGGGAATCAGGCCTGTAGCTCGGATATGCACTGGCTCATCAACAAGTGCACTCACAGGGGTAGCTGTCAACTGGATCATTTTTTTAGTGTGGCACCTGGGATGATTCTTCAGGAATATCTTCAGCAAAACCTCAAA|ACCTGAATCGAGACCAAAATTCTCTACATGGTGTCCCTGAGACTGTCCACATGAAGACTCTTCTGGTAATGCCCGACACAGATCGCGCCGCCATCTTCGATGAGATCCACGGGCCTGAGCGCAGCCTTCAGCCAGCAGTGACGCGCCC 18 0.8899758822685421 0.306797826439644 0.312654625173987 Y Y 3.44615838200292 3.6035982586987 3.44615838200292 1 0.0 0.0 Y 0.0 N Y 1547 1034 ENSG00000136881 ENSG00000136897 - + 9 9 104145801 104160896 utr5p intron BAAT MRPL50 104122699 104149915 - - 0.0 104133745 104160783 + - N - 0.590907053111215 N SA504 3 0.0 1.28 1 6 1 Y Y 0.0 0.0 25 1.43690948352222 1.11866778582938 1.43690948352222 1.11866778582938 4 - 4.88 0.9331309884584252 hTERT 1.0 330155 CCTTGTAAAAGAATAAAAAAGGAATTGCAGTGCAACAAAGTACGTGAAAATCAGGTTTCAATAGAATGTGACACAACGTGCAAGGAAATGAAGCGGAAAGCATCTGAGATAAAAGAAGCAGAAGCCAAAGCTGCTCTTGAAGAAGAAAAACGAAGACAACAGG|TCTTGAGAGCTGATGACAATAACATGGGCAATGGCTGCTCTCAGAAGCTGGCGACTGCTAACCTCCTCCGGTTCCTATTGCTGGTCCTGATTCCATGTATCTGTGCTCTCGTTCTCTTGCTGGTGATCCTGCTTTCCTATGTTGGAACATTACAAAA 18 0.96443606697892 0.560333808491001 0.0431605266733383 N Y 3.24061960172077 3.48271113610543 3.24061960172077 0 0.9936504156993472 0.0 Y 0.911105819790861 N Y 357 281 ENSG00000170448 ENSG00000145244 + - 4 4 47916653 47840123 coding coding NFXL1 CORIN 47849257 47596015 - - 0.0 47853112 47809064 - + N - - N SA504 1 0.0 1.0 1 0 1 Y N 0.0 0.0 15 1.45619685913997 1.3501162932423505 1.45619685913997 1.3501162932423505 4 - - 0.949303394884391 hTERT CGHSA0792 1.0 312499 TCTATCAGAGTGACCCTAGTGGAAATTACGGGGGATGGAAGGCCACATGCATTGGAAATAATAGCGCTGCAGCTGTGTCAATGTTGAAACAAGACTATAAAGAAGGAGAAATGACCTTGAAGTCAGCACTTGCTTTAGCTATCAAAGTACTAAATAAGACCATGGATGTTAGTAAACTCTCTGCTGAAAA|AGGATTATCTGAACCTTCTTCTATTGCAAAACATGAAGATAGTTTGCTTAAGGATTTATTTCAAGACTACGAAAGATGGGTTCGTCCTGTGGAACACCTGAATGACAAAATAAAAATAAAATTTGGACTTGCAATATCTCAATTGGTGGATGTGGATGAGAAAAATCAGTTAA 12 1.0 0.83260334683039 0.3868575050663 Y Y 3.5167965230840297 3.5827145855897897 3.5167965230840297 0 0.0 0.0 Y 0.0 N Y 7876 1481 ENSG00000041357 ENSG00000169684 + - 15 15 78841604 78887611 coding coding PSMA4 CHRNA5 78832747 78857862 + + 0.0 78839040 78873153 + - N - - N SA504 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 12 1.64907061531745 1.52370267380209 1.64907061531745 1.52370267380209 4 - - 0.975573395674154 hTERT 1.0 373658 AACTTCCGCTTCCGGTTCCTAGCGTTAACTGCGACCGGGGTTCAGCGCTCGGGTGAGGAGCTGGTGGCGTCGGCAGGTTCGAGGCGATTCGA|GGCCGAGTGTACTACTTCAACCACATCACTAACGCCAGCCAGTGGGAGCGGCCCAGCGGCAACAGCAGCAGTGGTGGCAAAAACGGGCAGGGGGAGCCTGCCAGGGTCCGCTGCTCGCACCTGCTGGTGAAGCACAGCCAGTCACGGCGGCCCTCGTCCTGGCGGCAGGAGAAGATCACCC 29 1.0 0.16460032023683702 0.596320322299734 N Y 3.38184245072052 3.762733552573681 3.38184245072052 0 0.0 0.0 Y 0.0 N Y 5872 2065 ENSG00000198258 ENSG00000127445 + - 19 19 9940791 9960358 utr5p intron UBL5 PIN1 9938568 9945933 + + 0.0 9938660 9949112 + - N - - N SA504 2 0.0 1.05882352941176 1 1 1 N N 0.0 0.0 17 0.723276585665547 1.47548423475772 1.47548423475772 0.723276585665547 4 - - 0.9000794360744029 hTERT 1.0 228178 ATTAGGAACTGGAGAAGATGATGACTATGTTGATGATTTTAATAGTACCAGCCATCGCTCAGAGAAAAGTGAGATAAGTATTGGTGAAGAGATAGAAGAAGACCTTTCTGTGGAAATAGATGACATCAATACCAGTGATAAG|GGCAGGCCTTATGAAAACAGGAGAGAACGCAGAGACGGAGGGTTTGTGAAGACGGAGGCATAGATTGGAGTGATGCATTCACAAGTCAAGGGGCACCAGGAACTGCAGACCCCACCGGAAATGGGAAGCGAGG 8 0.8073428900015021 0.368668328474104 0.24687864522720104 Y Y 3.56232542602083 3.3980196256232102 3.3980196256232102 0 0.985016890051215 0.0 Y 0.0 N N 384 270 ENSG00000213066 ENSG00000112486 + - 6 6 167455906 167553184 coding upstream FGFR1OP CCR6 167412670 167525295 + + 0.0 167447459 167506113 + - N - - N SA504 1 1.0 1.0 1 0 1 N Y 0.0 1.0 7 1.22474835172699 1.22474835172699 1.22474835172699 1.22474835172699 4 - - 0.9600287963825268 hTERT CGHSA0270 1.0 373713 CTCAGCGACAACGGCTGCTGCCCCGACACTGCGGCGCCTGGCGCTTTCCTCACGGTCTGGGCTTGAGAGGAAGCCGGAGTCCTTGTCTAAAGTCAGCATCATCAAGAGACTGGGCGCAGCTGCCCTTGTGCCCGAGGCCCAGGACAGCCAGGTCACCAGCACCAAGA|GTGAATACATCAAGACCTGGAGGCCACGGTACTTCCTGCTGAAGAGCGACGGCTCCTTCATTGGGTACAAGGAGAGGCCCGAGGCCCCTGATCAGACTCTACCCCCCTTAAACAACTTCTCCGTAGCAGAATGCCAGCTGATGAAGACCGAGAGGCCGCGACCCAACACCTTT 20 1.0 0.53296864343048 0.667797392726395 N Y 3.19293127328835 3.90657048781565 3.19293127328835 1 0.0 0.0 Y 0.0029325513196482 N Y 997 6713 ENSG00000160392 ENSG00000105221 + - 19 19 40854434 40791443 coding coding C19orf47 AKT2 40825443 40736224 - - 0.0 40827935 40762961 - + N - - N SA504 1 0.0 1.0 1 0 1 Y N 0.0 0.0 12 1.6104958640819498 1.1861736004915 1.6104958640819498 1.1861736004915 4 - - 0.977181094617762 hTERT 1.0 62325 TGTTCAAACACCTGGTACACAAACCATCGGAGGAGAGAGTAAGAGAAATAATTATCAATGCTGTTCGGATAGAACAGGAGTTCCTCACTGAGGCCTTGCCTGTGAAGCTCATTGGGATGAATTGCACTCTAATGAAGCAATACATTGAGTTTGTGGCAGACAGACTTATGCTGGAACTGGGTTTTAGCAA|GGTGCTGGGAGACCGTGAAGTGCAAAGCAGATGGAGTCCAGGCCCTCGGGGAGACAGCACGCCAGTGAGGGAGATGGAGACCAATCACCCACCCAGTGTGCGGGGATGAGAAGCTCGGGAAGGTCTGACCAGCCTTACGTCT 88 1.0 0.7547761924322741 0.590678920176783 Y Y 3.50425715662364 3.4478537991821097 3.4478537991821097 1 0.992978894387345 0.0 Y 0.543628135177431 N Y 14534 736 ENSG00000171848 ENSG00000163009 + - 2 2 10271545 10351851 coding utr5p RRM2 C2orf48 10262455 10281509 + + 0.0 10269281 10281981 + - N - - N SA504 2 0.711267605633803 1.51162790697674 1 22 2 N Y 0.0 0.711267605633803 43 1.8515880593038 1.3694036688601 1.8515880593038 1.3694036688601 4 - - 0.950181713731868 hTERT CGHSA0554 1.0 136905 GCTTTGCTGGGGTTTACTTTGAGAAAATCTTAAAAGAAACAAAACAATCAGTGTGGATAAGAAATATTCAGCTTGGTTTCTTTGGAAGTATATTTGGATTAATGGGTGTATACATTTATGATGGAGAACTGGTATCAAAGAATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCA|GCCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTGGTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAACGGC 25 1.0 0.539787182861692 0.22950015801928 N Y 3.73233517440054 3.6988816296077 3.6988816296077 0 0.0 0.0 Y 0.00999748490945673 N Y 2442 9437 ENSG00000117620 ENSG00000156875 + - 1 1 100492535 100548933 coding coding SLC35A3 HIAT1 100435345 100503653 + + 0.0 100480976 100515465 + - N - - N SA504 1 0.0 1.0 1 0 2 Y N 0.0 0.0 16 1.82265699587718 1.2151046639181202 1.82265699587718 1.2151046639181202 4 - - 0.984760350672326 hTERT 1.0 136906 AATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTGGTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAACGGCTTAATT 16 0.00118102055184853 0.364863021529716 0.5 N Y 3.73233517440054 3.6669556681247206 3.6669556681247206 0 0.0 0.0233773377337734 Y 0.0233773377337734 N Y 2442 9437 ENSG00000117620 ENSG00000156875 + - 1 1 100492535 100548933 coding coding SLC35A3 HIAT1 100435345 100503653 + + 0.0 100480976 100515465 + - N - - N SA504 1 0.0 1.0 1 0 2 Y N 0.0 0.0 5 1.31154154200686 0.993299844314018 1.31154154200686 0.993299844314018 4 - - 0.947559019243012 hTERT 1.0 385759 GCACATGTTTACCTGATACAGCAGTGCTGCGTGTTGTACATACTTGGAACAACAAACTAGAAATACTGTACTTCTGTACCAACATTGCCTCCTAGCAGAGAAGTGTGTGTGTGACAAGCCAGTTCTACAGGCATTACCTAG|AGTGAAGACATTTCCACCTGGACACCTGACCATGTGCCTGCCCTGAGCAGCGAGGCCCACCAGGCATCTCTGTTGTGGGCAGCAGGGCCAGGTCCTGGTCTGTGGACCCTCGGCAGTTGGCAGGCTCCCTCTGCAGTGGGGTCTGGGCC 1 1.0 0.9435019593800552 0.9325687631209258 Y Y 3.63825270713077 3.47080361183081 3.47080361183081 0 0.992932173234871 0.0 Y 0.0 N Y 7010 1056 ENSG00000131508 ENSG00000171604 + - 5 5 139008018 139063467 utr3p utr5p UBE2D2 CXXC5 138906016 139026884 + + 0.0 139006642 139059949 + - N - - N SA504 2 0.0 1.75 1 6 2 N Y 0.0 0.0 8 1.32118522981573 0.983656156505144 1.32118522981573 0.983656156505144 4 - - 0.9427759361141692 hTERT 1.0 385760 ATTCTACGATCACAGTGGTCTCCAGCACTAACTATTTCAAAAGTACTCTTGTCCATCTGTTCTCTGTTGTGTGATCCCAATCCAGATGATCCTTTAGTGCCTGAGATTGCTCGGATCTACAAAACAGATAGAGAAAA|AGTGAAGACATTTCCACCTGGACACCTGACCATGTGCCTGCCCTGAGCAGCGAGGCCCACCAGGCATCTCTGTTGTGGGCAGCAGGGCCAGGTCCTGGTCTGTGGACCCTCGGCAGTTGGCAGGCTCCCTCTGCAGTGGGGTCTGGGCCTCGG 20 1.0 0.578251696146837 0.405704233222504 Y Y 3.58424216889964 3.47080361183081 3.47080361183081 1 0.99272581332932 0.0 Y 0.0 N Y 7010 1056 ENSG00000131508 ENSG00000171604 + - 5 5 139008018 139063467 coding utr5p UBE2D2 CXXC5 138906016 139026884 + + 0.0 139003046 139059949 + - N - - N SA504 1 0.0 1.0 1 0 2 N Y 0.0 0.0 8 1.01258721993177 1.27296679077136 1.27296679077136 1.01258721993177 4 - - 0.98933150526971 hTERT 1.0 297026 GGAGGCGGCCGCCGTGCCATTCTTAAAGGCGCCCGAGTGTAGGCGACAGGCCGCTGACGGCCGGAAGGAAAATGAGTGAGTCTTTGGTTGTTTGTGATGTTGCCGAAGATTTAGTGGAAAAGCTGAGAAAGTTTCGTTTTCGCAAAGAAACGAACAACGCTGCTATTATAAG|TATATGAGTAGACCAGTGATGAGTGGCCCAGGACTCTATGACCCTACAACCATCATGAATGCAGATATTCTAGCATATTGTCAGAAGGAAGGATGGTGCAAATTAGCTTTTTATCTTCTAGCATTTTTTTACTACCTATATGGGTAAGTTGAA 3 0.358207128445119 0.915233997344002 0.509702268999322 N Y 3.49744043328497 3.4682429587510697 3.4682429587510697 1 0.0 0.0 Y 0.0 N Y 7314 10714 ENSG00000197045 ENSG00000100528 + - 14 14 54955914 54908149 coding coding GMFB CNIH 54941202 54893654 - - 0.0 54950389 54897122 - + N - - N SA504 1 0.0 1.0 1 0 3 N N 0.0 0.0 8 0.9161503418430258 0.954725093078522 0.954725093078522 0.9161503418430258 4 - - 0.968817029911134 hTERT 1.0 297050 TTCATTGTGTATAGTTATAAATATCAACATGATGATGGAAGAGTTTCATATCCTCTGTGCTTTATTTTCTCCAGTCCTGTTGGATGTAAGCCTGAACAACAGATGATGTATGCTGGAAGTAAGAATAAGCTAGTCCAGACAGCTGAACTAACCAAG|ATTATAGCATTTGATGAGCTGAAGACTGATTACAAGAATCCTATAGACCAGTGTAATACCCTGAATCCCCTTGTACTCCCAGAGTACCTCATCCACGCTTTCTTCTGTGTCATGTTTCTTTGTGCAGCAGAGTGGCTTACACTGGGTCTCAATATGCCCCTCTTGGCATATCATATTTGGAGGTATATGAGTAGACCAGTGATGAGTGG 17 0.599470865783606 0.412282595995871 0.413244692411587 N Y 3.4309786568760896 3.3733608154261803 3.3733608154261803 1 0.0 0.0 Y 0.0 N Y 7314 10714 ENSG00000197045 ENSG00000100528 + - 14 14 54955914 54908149 coding coding GMFB CNIH 54941202 54893654 - - 0.0 54946504 54903155 - + N - - N SA504 2 0.0 1.4 1 8 3 Y N 0.0 0.0 20 1.44655317133109 1.8323006836860505 1.8323006836860505 1.44655317133109 4 - - 0.921955791473337 hTERT 1.0 139359 CACTGCACAGTTCGAGGGGCCAAGGCAGAAGAAATCTTGGAGAAGGGTCTAAAGGTGCGGGAGTATGAGTTAAGAAAAAACAACTTCTCAGATACTGGAAACTTTGGTTTTGGGATCCAGGAACACATCGATCTGGGTATCAAATATGACCCAAGCATTGGTATCTACGGCCTGGACTTCTATGTG|CTATTGAAATATTTGAAGAAACTCTCCACCCTGCCTATTACAGTAGACATTCTTGCGGAGACTGGGGTTGGGAAAACAGTAAATAGCTTGCGAAAACACGAGCATGTTGGAAGCTTTGCCAGGGACCTAGTGGCCCAGTGGAAGAAGCTGGTTCCTGTGGAACGAAATGCTGAGCCTGAT 83 1.0 0.9257433637129828 0.191544300050152 N Y 3.80041266240192 3.32320511986986 3.32320511986986 0 0.994459582198002 0.0 Y 0.994459582198002 N Y 39918 10696 ENSG00000142676 ENSG00000011007 + - 1 1 24022915 24088549 coding coding RPL11 TCEB3 24018269 24069645 + + 0.0 24021281 24075511 + - N - - N SA504 4 0.0 2.45161290322581 1 48 2 Y N 0.0 0.0 62 1.8323006836860505 1.76479486902394 1.8323006836860505 1.76479486902394 4 - - 0.933091326391148 hTERT CGHSA0320 1.0 139431 GACTTCTATGTGGTGCTGGGTAGGCCAGGTTTCAGCATCGCAGACAAGAAGCGCAGGACAGGCTGCATTGGGGCCAAACACAGAATCAGCAAAGAGGAGGCCATGCGCTGGTTCCAGCA|GAAGCTATTGAAATATTTGAAGAAACTCTCCACCCTGCCTATTACAGTAGACATTCTTGCGGAGACTGGGGTTGGGAAAACAGTAAATAGCTTGCGAAAACACGAGCATGTTGGAAGCTTTGCCAGGGACCTAGTGGCCCAGTGGAA 11 0.6880630840618379 0.4334878013270129 0.665519262463634 N Y 3.55657227767558 3.3619172994679904 3.3619172994679904 0 0.9916281119189252 0.0 Y 0.514430491297643 N Y 39918 10696 ENSG00000142676 ENSG00000011007 + - 1 1 24022915 24088549 coding intron RPL11 TCEB3 24018269 24069645 + + 0.0 24022398 24075511 + - N - - N SA504 2 0.0 1.42857142857143 1 3 2 Y N 0.0 0.0 7 0.8968629662252792 1.3886910444778502 1.3886910444778502 0.8968629662252792 4 - - 0.9574452280932508 hTERT CGHSA0320 1.0 373474 GATCTGCCCACCGTGACTGTGAGGACGTGGCCAAGGCCGCCCTGCGGGACCTGGGTTGTCATGTCGAGCTCCGAGAGCTGTGGACAGGCCAGAGGGGCAACCTGGCGCCATGACCCCAGGCCCAGTCTGGGCCGTGACTCTG|GGACCGAGTCTCCTGCCATTCCGAGCAGGCCTGGTATGGGTAATGGTGTGAAGGAAGGCCCGGTGCGATTGCATGAGGATGCTGAGGCTGTCCTGTCCTCGTCCGTCTCATCAAAGCGTGACCACAGGCAAGTGCTCAGCTCCCTGCTGTCTGGGGCCCTGGCTGGTGCCCTTGCCAAAACAGCGGTAGCTCCC 11 0.9148349986825328 0.6025738999597541 0.5614534174453111 Y Y 3.4048855493250496 3.71041843152174 3.4048855493250496 3 0.0 0.00296735905044498 Y 0.00296735905044498 N Y 1825 623 ENSG00000105676 ENSG00000181035 + - 19 19 19170563 19223704 utr3p utr5p ARMC6 SLC25A42 19144384 19174803 + + 0.0 19168467 19206900 + - N - - N SA504 1 0.0 1.0 1 0 1 N Y 0.0 0.0 6 1.52370267380209 1.42726579571335 1.52370267380209 1.42726579571335 4 - - 0.990835764536905 hTERT 1.0 84520 GCCAAGAGATCAAAGATAAAATCTTTTGTGAAAGTGTATAACTACAATCACCTAATGCCCACAAGGTACTCTGTGGATATCCCCTTGGACAAAACTGTCGTCAATAAGGATGTCTTCAGAGATCCTGCTCTTAAACGCAAGGCCCGACGGGAGGCCAAGGTCAAGTTTGAAGAGAG|GCCCTCCACGCCCTTCAGGAGGAGCAGGCCAGACTCAAGATGAGGCTGTGGGACCTGCAGCAGCTGAGAAAGGAGCTCGGGGACTCCCCCAAAGACAAGGTCCCATTTTCAGTGCCCAAGATCCCCCTGGTATTCCGAGGACACACCCAGCAGGACCCGGAAGTGCCTAAGTCTTTAGTTTCCAATTTGCGG 61 1.0 0.696990064717668 0.526804241622985 Y Y 3.2693225627147204 3.28655907981151 3.2693225627147204 1 0.0 0.0 Y 0.0 N Y 33522 987 ENSG00000131469 ENSG00000068079 + - 17 17 41154976 41166473 coding coding RPL27 IFI35 41150290 41158742 + + 0.0 41154800 41164196 + - N - - N SA504 5 0.0 1.59375 1 11 1 N Y 0.0 0.0 32 1.69728905436182 1.8323006836860505 1.8323006836860505 1.69728905436182 4 - - 0.917209548023356 hTERT 1.0 297054 CTGAGCTCTTCGCTTATCCCCTGGATTGGTCTATTGTGGATTCTATACTGATGGAACGTCGAATTAGACCATGGATTAATAAGAAAATCATAGAATATATAGGTGAAGAAGAAGCTACATTAGTTGATTTTGTTTGTTCTAAGGTTATGGCTCATAGTTCACCCCAGAGCATTTTAGATGATGTTGCCAT|GAATGACAATAGAGAACGGCAGGAGCACAACGACAGACGGAGCCTTGGCCACCCTGAGCCATTATCTAATGGACGACCCCAGGGTAACTCCCGGCAGGTGGTGGAGCAAGATGAGGAAGAAGATGAGGAGCTGACATTGAAATATGGCGCCAAGCATGTGA 12 0.5679516778941279 0.245026594600482 0.6513619778706109 Y Y 3.4378445805779303 3.23693259291531 3.23693259291531 2 0.0 0.0 Y 0.0 N Y 10371 6654 ENSG00000119707 ENSG00000080815 + - 14 14 73588122 73690399 coding coding RBM25 PSEN1 73525144 73603126 + + 0.0 73581041 73637505 + - N - - N SA504 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 9 1.68764536655294 1.24403572734474 1.68764536655294 1.24403572734474 4 - - 0.954631848757827 hTERT 1.0 252378 CAAACATCAAGCAGTACAGCTTCCTCGAGAGGGACAAGAAGACCAAGGTCTGACTAAGGATTTCAGCAATAGTCCTTTGCATCGCTTTAAAAAGCCGGGCTCTAAAAACTTCCAGAATATCTTTCCACCATCAGCCACTCTGCATCTTTCCAACATTCC|GTTTAGACGTCTGTGCCACTTGCCATGAACATGCCACATGCCAGCAAAGAGAAGGGAAGAAGATCTGTATTTGCAACTATGGATTTGTAGGGAACGGGAGGACTCAGTGTGTTGGTAAGTTCTGAACTC 12 1.0 0.459433445690568 0.573795035546905 Y Y 3.0867335950812698 3.60785432895764 3.0867335950812698 0 0.0 0.0 Y 0.0 N Y 6920 429 ENSG00000119314 ENSG00000106868 + - 9 9 115095947 114937688 coding coding PTBP3 SUSD1 114980715 114803065 - - 0.0 114989691 114919893 - + N - 5.91049600944421 N SA504 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 7 1.20546097610925 0.8968629662252792 1.20546097610925 0.8968629662252792 4 - 0.857142857142857 0.959682076761132 hTERT 1.0 139556 CGGGAAGAGAACACGGGAACTGAGTATGGAAAACCAGTGTTCTCTGGACATGAAAAGCAAACTGAATACAAGTAAACAAGCAGAAAATGGACAACCAGAACCACAAAACAAGGTTCCGGCTGAGGACCTTACATTGACATTCAG|GAAGGTTTATCTTTTGTCCTTGCTGCTCATTGGCTTCTGGGACTGCGTGACCTGTCACGGGAGCCCTGTGGACATCTGCACAGCCAAGCCGCGGGACATTCCCATGAATCCCATGTGCATTTACCGCTCCCCGGAGAAGAAGGCAACTGAGGATGAGGGCTCAGA 29 1.0 0.5524952350617989 0.36524860848416 N Y 3.79040344379773 3.369767092576549 3.369767092576549 0 0.0 0.0 Y 0.0 N Y 3131 359 ENSG00000135870 ENSG00000117601 + - 1 1 173991435 173886516 coding coding RC3H1 SERPINC1 173900352 173872947 - - 0.0 173910403 173884057 - + N - 29.9524131994261 N SA504 1 0.0 1.0 1 0 1 Y N 0.0 0.0 17 1.31154154200686 1.60085217627308 1.60085217627308 1.31154154200686 4 - 0.117647058823529 0.9788504055206492 hTERT 1.0 136963 GCTGGGCCGGCTCCCTCTGGCTTTTTAAGGACCCCTGTGCCGCCCCCAACGAAGGCTTCTGCTCCGCCGGAGTCCAAACGGAGGCTGGAGTGGCTGACCTCACTTGGGTTGGGGAGAGAGGTATTCTAGTGGCCTCCGATTCAGG|GCTGGTTCTTGTGCTGAAACACCACGATGGTGCTGCCCATAAACTCGTGTGTTATTTCACCAACTGGGCACACAGTCGGCCAGGCCCTGCCTCGATCTTGCCCCATGACCTGGACCCCTTTCTCTGCACCCACCTGATATTTGCCTTTGCCTCAATGAACAACAATCAGATTGTTGCTAAG 5 0.5929505902784711 0.902107583147544 0.7770047921470441 N Y 3.49168728493972 3.47804449069255 3.47804449069255 0 0.993124538648107 0.00305810397553519 Y 0.00305810397553519 N Y 2876 1190 ENSG00000116455 ENSG00000085465 + - 1 1 111991998 111970399 coding coding WDR77 OVGP1 111982512 111956936 - - 0.0 111991241 111969713 - + N - - N SA504 1 0.0 1.0 1 0 2 Y N 0.0 0.0 14 1.28261047858024 1.64907061531745 1.64907061531745 1.28261047858024 4 - - 0.9834229282375542 hTERT CGHSA0371 1.0 385499 CCAAAAAATTTACCCAGAGTCTTTTAGTCCTGCTATACAGCTGCACCTTGTACATCAAGCTCCATGTAATGTTCCTCCTTACCTCTCAAAGAATGAATCAAACCTTGGGGACCTCTTACTGGGCTTTCTTAAATATTATGCTACAGAATTTGA|ACAGATGTAAGCCAGTCAGTAGCTGGGCTTCATCTTGCATATTCCTAGGAGGAAATATGTTTATGAAGTGATGGCAAACGCGGCTGCTGCATTGGTCAGGAATGATAACCGCAGAGGAATTTAAACCCAGCCTTAAGGAGTAGG 15 1.0 0.584719039669985 0.398012107962025 Y Y 3.2668017624283303 3.63721963736088 3.2668017624283303 1 0.0 0.0 Y 0.0 N N 1389 3232 ENSG00000164329 ENSG00000164309 + - 5 5 78982471 79096063 coding intron PAPD4 CMYA5 78907943 78985700 + + 0.0 78964851 79023365 + - N - 0.0282225431262722 N SA504 1 0.0 1.0 1 0 1 N Y 0.0 0.0 6 1.32118522981573 1.2151046639181202 1.32118522981573 1.2151046639181202 4 - 0.166666666666667 0.971019319845873 hTERT 1.0 324251 TGGTGTTTCACAAGAGGACTTTCTACGGAGGAACCAAGATAAAAATGTGAGAGATGTAATATATGACATTGCCAGTCAAGCACACTTGCACCTAAAGCAT|GCTATTAGTGAAAGATGGTGGATCGCTTGGCAAACAGTGAAGCAAATACTAGACGTATAAGTATAGTGGAAAACTGTTTTGGAGCAGCTGGTCAACCTTTAACTATACCTGGACGAGTTCTTATTGGAGAAGGAGTATTGACTAAGTTGTGCAGGAAAAAGCCCAAAGCAAGGCAGT 10 0.312216551880029 0.310503820975348 0.5 Y Y 3.5303596117444904 3.64553343878587 3.5303596117444904 0 0.0 0.0 Y 0.0 N Y 451 3283 ENSG00000156170 ENSG00000175895 + - 8 8 96128683 96168912 coding utr5p NDUFAF6 PLEKHF2 95907995 96146032 + + 0.0 96060786 96166259 + - N - 0.11434619479149 N SA504 1 0.0 1.0 1 0 1 N Y 0.0 0.0 8 1.51405898599321 1.52370267380209 1.52370267380209 1.51405898599321 4 - 10.75 0.9222519973595972 hTERT 1.0 234731 GCGTCCGTCATTATTGAACAGCTCATGATATTCCTGCTCAGCAGAATTGCACAGCAGTTGTTGGTAGCAAGTCAAGTCCCAGACTCTGAGAGTGTGACAGATTGCCCCCACAGCGCTGCTTCTCCAGTGCTGGGGCAGCATGCCGAGTGCCCCTGTTCGTGGTGACTG|ACCGTTGGAAATGGTCACACATTCCTTCTCCCCTTAGAGCGAACACTGTCATAACCACTGAAGCGCGGGCCGAGGAGCGCCACATCGGCCACAGGCTTTGTTGCCCCGCCTTCAAAGCCACTGCGCGTGC 3 1.0 0.500237770178439 0.8631104596650679 Y Y 3.4367716580146896 3.7255184510618697 3.4367716580146896 0 0.992333419089272 0.0 Y 0.0 N Y 573 171 ENSG00000147119 ENSG00000230844 - + X X 46457843 46407671 utr3p intron CHST7 ZNF674-AS1 46433219 46404928 + + 0.0 46457195 46405062 - + N - 0.760311800183944 N SA504 1 0.0 1.0 1 0 1 N Y 0.0 0.0 14 1.67800167874407 1.06080565897614 1.67800167874407 1.06080565897614 4 - 1.42857142857143 0.975162797104162 hTERT 1.0 373590 CAACCCAGCCTTCTTTCAGACCACGGTCACCGCCCAGATCCTGCTGAAGGCCCTCACCAACTTGCCGCACACAGACTTCACCCTGTGCAAGTGCATGATCGACCAGGCACATCAAGAAGAACGGCCAATCCGACAGATTTTGTACCTCGGGGACCTGCTGGAGACCTGCCATTTCCAGGCCTTCTG|GACCTTCACGGCATGGTGCAACTCCCACCTGCGGAAGGCAGGCACACAGATCGAGAACATTGATGAGGACTTCCGAGACGGGCTCAAGCTCATGCTGCTCCTGGAGGTCATATCAGGGGAGCGGTTACCTAAGCCGGAGCGGGGGAAGATGAG 8 0.85227675031737 0.94556585506198 0.239490004722134 Y Y 3.4378445805779303 3.6659225983548303 3.4378445805779303 0 0.993483275663206 0.0 Y 0.0 N Y 6842 56541 ENSG00000178982 ENSG00000130402 + - 19 19 39127595 39222223 coding coding EIF3K ACTN4 39109735 39138289 + + 0.0 39116742 39191240 + - N - - N SA504 2 0.0 1.09090909090909 1 1 1 Y Y 0.0 0.0 11 1.5912084884642 1.4079784200956005 1.5912084884642 1.4079784200956005 4 - - 0.9569697876282058 hTERT 1.0 83748 GATAGAATTCTACCTAGGCTTCAAGCTAGAGAAAAATGTAAGCCACAGCTGTTGAACTTCCCACCTTATACCAGAAATCAGATAGTCACTATTTTGCAAGATCGACTTAATCAGGTATCTAGAGATCAGGTTCTGGACAATGCTGCAGTTCAATTCTGTGCCCGCAAAGTCTCTGCTGTTTCAGGAGATGTTCGCAAAGCACTGGATGTTTGCAG|CATCACAGGACATGGCCCCCTCAGCCACCTAGCTGGGGCCCATCTAGGAGTGGCATCTTTTTTGGTGCCCTGAAGGCCAGCTCTGGACCTTCCCAGGAAAAGTGCCAGCTCACAG 16 0.907353159935336 0.594536713544286 0.468413027983099 Y Y 3.4780843434859 3.25360004855864 3.25360004855864 4 0.0 0.0 Y 0.0 N Y 735 1577 ENSG00000094804 ENSG00000131759 + - 17 17 38459171 38513094 coding utr5p CDC6 RARA 38443885 38465444 + + 0.0 38451708 38487109 + - N - 0.105482625970229 N SA504 1 0.0 1.0 1 0 3 N Y 0.0 0.0 5 1.55263373722871 0.9161503418430258 1.55263373722871 0.9161503418430258 4 - 9.8 0.978839542602388 hTERT 1.0 84220 GGTCACTCTGGGGAAGTTATATGAAGCCTACAGTAAAGTCTGTCGCAAACAGCAGGTGGCGGCTGTGGACCAGTCAGAGTGTTTGTCACTTTCAGGGCTCTTGGAAGCCAGGGGCATTTTAGGATTAAAGAGAAACAAGGAAACCCGTTTGACAAAG|CATCACAGGACATGGCCCCCTCAGCCACCTAGCTGGGGCCCATCTAGGAGTGGCATCTTTTTTGGTGCCCTGAAGGCCAGCTCTGGACCTTCCCAGGAAAAGTGCCAGCTCACAGAACTGCTTGACCAAAGGACCGGCTCTTGAGACATCCCCCAACCCACCTGGCCCCCAGCTAGGGTGGGGGCTCCAGGAGACTGAG 11 0.7138101575539949 0.312126830724938 0.225100487560345 Y Y 3.0460044763065297 3.25360004855864 3.0460044763065297 0 0.0 0.0 Y 0.0 N Y 735 1577 ENSG00000094804 ENSG00000131759 + - 17 17 38459171 38513094 coding utr5p CDC6 RARA 38443885 38465444 + + 0.0 38457860 38487109 + - N - - N SA504 1 0.0 1.0 1 0 3 N Y 0.0 0.0 8 1.48512792256659 1.6297832396996998 1.6297832396996998 1.48512792256659 4 - - 0.921973104730956 hTERT 1.0 84221 GGGTTGGTCTTATTCACATATCCCAAGTCATCTCAGAAGTTGATGGTAACAGGATGACCTTGAGCCAAGAAGGAGCACAAGATTCCTTCCCTCTTCAGCAGAAGATCTTGGTTTGCTCTTTGATGCTCTTGATCAGGCAGTTGAAAATCAAAGAGGTCACTCTGGGGAAG|CATCACAGGACATGGCCCCCTCAGCCACCTAGCTGGGGCCCATCTAGGAGTGGCATCTTTTTTGGTGCCCTGAAGGCCAGCTCTGGACCTTCCCAGGAAAAGTGCCAGCTCACAGAACTGCTTGACCAAAGGACCGGCTCTTGAGACATCCCCCAACC 11 0.515694417025384 0.454318546082611 0.758192116247 Y Y 3.35038049755395 3.25360004855864 3.25360004855864 0 0.0 0.0 Y 0.0 N Y 735 1577 ENSG00000094804 ENSG00000131759 + - 17 17 38459171 38513094 coding utr5p CDC6 RARA 38443885 38465444 + + 0.0 38457282 38487109 + - N - - N SA504 1 0.0 1.0 1 0 3 N Y 0.0 0.0 5 1.46584054694884 1.51405898599321 1.51405898599321 1.46584054694884 4 - - 0.973752478864221 hTERT 1.0 321171 AAAAGCTGTTGTTTGCCATAGAAGAAACAGAAGGATTTGGACAAGAGTAACTTCTGAGAACTTGCACCATGAATGGGCAAGAACTTATTTGCAATGTTTGTCCTTCTCTGCCTGTTGCACATCTTGTAAAATTGGACAATGGCTCTTTAGAGAGTTATCTGAGT|ACACTCCTGGAAGGAGAACCAAATCCTTCCTCACTGAAGAGCAGCTACTGTGGAATGAAACTTTGGAGTTAGATCATCGTTGAATCCAGCAAGCTACAGTGCCTGGGAGAAACAGCATTTATAAAGTATCGAGGTTACCGATACTTCCCTGAAGCTACCGGAGATAACGTTATGTGCGTGTTCAGCACAG 37 0.7787920932290171 0.580356627126853 0.493841763287995 Y Y 3.56488607910057 3.38759559906577 3.38759559906577 0 0.0 0.0 Y 0.0 N N 1408 4589 ENSG00000078747 ENSG00000125971 + - 20 20 33099198 33128762 utr3p upstream ITCH DYNLRB1 32951041 33104214 + + 0.0 33095713 33102984 + - N 4.07564392351735 - N SA504 1 0.0 1.0 1 0 2 N Y 0.0 0.0 12 1.57192111284646 1.8323006836860505 1.8323006836860505 1.57192111284646 4 1.75 - 0.986088345914498 hTERT 1.0 971 CTTCCATTTTTGTCTACTGTTGTTACTGACAAGCTTTTTGTAATTGATGCTTTGTATTCAGATAATATAAGCAAGGAAAACTGTGTTTTCAGAAGCTCACTGATTGGCATAGTTTGTGGTGTTTTCTATCCCAGTTCTTTGGCTTTTACTAAAAATGGACGCCTGGCAACCAA|GAATCTACTTGAAAATGGATCGGTTTATGTTGGATTAAATGCTGCTCTTTGTGGCCTCATAGCAAACAGTCTTTTTCGACGCATCTTGAATGTGACAAAGGCTCGCATAGCTGCTGGCTTACCAATGGCAGGGATACCTTTTCTTACAACAGACTTAACTTACAGATGTTTTGTAAGTTTTCC 14 1.0 0.7111797423966619 0.372108989345802 Y Y 3.48639814491089 3.2629469197535097 3.2629469197535097 0 0.0 0.00280112044817915 Y 0.00280112044817915 N Y 1679 1099 ENSG00000171204 ENSG00000171202 + - 11 11 85347580 85367591 coding coding TMEM126B TMEM126A 85339629 85359011 + + 0.0 85346822 85365107 + - N - - N SA504 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 12 1.6587143031263198 1.57192111284646 1.6587143031263198 1.57192111284646 4 - - 0.9747361114374572 hTERT 1.0 201581 GTAGCAGCTTATCGCCTGCCATATTTGCTAGTTGGTGACAGTGTTGTGCTGAAGCAGGATTCCATCTACTATGAACATTTTTACAATGAGCTGCAGCCCTGGAAACACTACATTCCAGTTAAGAGCAACCTGAGCGATCTGCTAGAAAAACTTAAATGGGCGAAAGATCACGATGA|AGAGGTTAAATTAAAAATACCTTTTGGAAATAAATTACTAGATGCTGTTTGTTTGGTACCTAACAAGAGCTTAACATATGGAATAATTCTTACACATGGAGCATCAGGAGATATGAATCTTCCTCATTTGATGTCACTGGCATCCCATCTTGCATCTCATGGGTTTTTCTGCCTGAGATTTA 38 1.0 0.7869239262861809 0.676378442910442 Y Y 3.34831435801417 3.01767223767317 3.01767223767317 6 0.0 0.0 Y 0.00278551532033411 N Y 644 828 ENSG00000134901 ENSG00000151287 + - 13 13 103451357 103426161 coding coding KDELC1 TEX30 103436631 103418340 - - 0.0 103441362 103421891 - + N - - N SA504 2 0.0 1.05882352941176 1 1 1 Y Y 0.0 0.0 17 1.7840822446416795 1.76479486902394 1.7840822446416795 1.76479486902394 4 - - 0.908518381278184 hTERT 1.0 39622 AATGCCCGATCAAGGAGGTGGTGCTTTATGTCAAAGAAGAAATGAAGAGGAATGATCTTCCAGAAACAGCAGTGATTGGTCTTCTGTGGACATGTATAATGAACGCTGTTGAGTGGAACAAGAAGGAAGAACTTGTTGCAGAGCAGGCTCTGAAGCACCTGAAG|TTGGTTAGTCTGCTGCTAATTGGAATTGCTGCGTGGGGCATTGGCTTCGGGCTGATTTCCAGTCTCCGAGTGGTCGGCGTGGTCATTGCAGTGGGCATCTTCTTGTTCCTGATTGCTTTAGTGGGTCTGATTGGAGCTGTAAAACATCATCAGGTGTTGCTATTTTTT 32 1.0 0.715264923226484 0.312893992967398 Y Y 3.4937534244795 3.4571608175836404 3.4571608175836404 0 0.0 0.0 Y 0.0 N Y 4741 3255 ENSG00000136261 ENSG00000106537 + - 7 7 16746148 16824161 coding coding BZW2 TSPAN13 16685756 16793160 + + 0.0 16736686 16815836 + - N - - N SA504 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 19 1.55263373722871 1.64907061531745 1.64907061531745 1.55263373722871 4 - - 0.969598354560567 hTERT 1.0 324513 AGCACATCGGCAAGCCCTCCACCATCCGCAGAGATGCCCCTGCTGGCCGCAAAGTGGGTCTCATTGCTGCCCGCCGGACTGGACGTCTCCGGGGAACCAAGACTGTGCAGGAGAAAGAGAACTAGTGCTGAGGGCCTCAATAAA|GCCAAATAGTTGCATCACATGTATCTAATCCGAGAGTCTCATGCTTCTGGTAGCTCCTCAGTGACCAGCTCCTGCTCACTGCCCTCAGAAAGCCCAACCCTCAGGCAATGGCGGCCTTGTTCCTGTCTGCCCCACCCCAGGCCGAGGTG 25 0.8464522805140391 0.8970286396717391 0.6887064947330379 Y Y 3.40744620240479 3.6759318169590096 3.40744620240479 1 0.0 0.0 Y 0.0 N Y 58612 1473 ENSG00000161016 ENSG00000196378 + - 8 8 146017972 146012730 utr3p utr5p RPL8 ZNF34 146015150 145997611 - - 0.0 146015170 146005665 - + N - - N SA504 4 0.0 2.36363636363636 1 8 1 Y Y 0.0 0.0 11 1.3886910444778502 1.45619685913997 1.45619685913997 1.3886910444778502 4 - - 0.913540350035351 hTERT 1.0 39973 ATCAGCCAACAATGCCACCTTTGCCCGGGTGCCAGTGGCAACCTACACCAACTCCTCACAACCCTTCCGGCTAGGAGAGCGCAGCTTTAGCCGGCAGTATGCCCACATTTATGCCACCCGCCTCATCCAAATGAGACCCTTCCTGGAGAACCGGGCCCAGCAGCACTGG|GCTCCGAAGCGACACATGTTGTGATGGAAGAGACCTCAGCAGAGGAGGCCGTCAGCTGGCAGGAGCGCAGGATGGCAGCTGCTCCCCCGGGTTGCACCCCCCCAGCTCTGCTGGACATAAGCTGGTTAACAGAGAGCCTGGGAGCTGG 5 0.921421215565611 0.380271985128775 0.0435843238682973 N Y 3.48064499656564 3.7527243339695 3.48064499656564 0 0.0 0.0031446540880503107 Y 0.0031446540880503107 N Y 7266 815 ENSG00000106628 ENSG00000122678 + - 7 7 44163957 44122139 coding coding POLD2 POLM 44154286 44111846 - - 0.0 44161433 44120515 - + N - - N SA504 1 0.0 1.0 1 0 1 N N 0.0 0.0 6 1.1958172883003702 1.25367941515362 1.25367941515362 1.1958172883003702 4 - - 0.972491051406234 hTERT 1.0 229315 GCAGGGCTCGGGAGCGAAGGCTGCTAGAGGGCTATGAGATCTATGTGACCCCTGGAGTCCAGCCACCACCACCTCAGATGGGAGAGATTATTAGCTGCTGTGGAGGCACATACCTACCCAGCATGCCTCGGTCCTATA|AGATGGGAAAACTAGACGAGCTGAGATTCAACCCACGTGAGCGGCTGCAGAGCCGCTACCCTTAACAGCTCTCTCTCGGGATTCTAACATTCCCTTCTGTGACGGAGAGACAGCAGGCCGGGACACGCATCCCAGGACGGATCCACAGCTGGATGGGGAAGGCTGCGCCA 12 1.0 0.439938482924972 0.6999664255338081 N Y 3.6491271616355 3.5157236005207904 3.5157236005207904 0 0.9927770742460492 0.0 Y 0.27770742460485 N Y 4602 2448 ENSG00000137337 ENSG00000137404 + - 6 6 30685666 30659197 coding intron MDC1 NRM 30667584 30655824 - - 0.0 30670330 30659058 - + N - 175.566238653516 N SA504 1 0.0 1.0 1 0 1 N N 0.0 0.0 6 1.17652991268262 1.27296679077136 1.27296679077136 1.17652991268262 4 - 0.166666666666667 0.9859570023564308 hTERT 1.0 138883 GCAGCGATTCGGCACTCGAGCAGTCTATTTGGCCAGTGTGGCAGCTTTCCCTGTGGCTGCCGGTGCCACATGCCTGTCCCACAGTGTGGCCGTGGTGACAGCTTCAGCCGCCCTCACCGGGTTCACCTTCTCAGCCCTGCAGATCCTGCCCTACACACTGGCCTCCCTCTACCACCGGGAGAAGCAG|CTCATTGCTATGGACAGTGCTATCACCCTGTGGCAGTTCCTTCTTCAGCTCCTGCAGAAGCCTCAGAACAAGCACATGATCTGTTGGACCTCTAATGATGGGCAGTTTAAGCTTTTGCAGGCAGAAGAGGTGGCTCGTCTCT 11 0.622932200737211 0.596489910422853 0.716723115854616 Y Y 3.3316867551641898 3.64656650855576 3.3316867551641898 8 0.0 0.0 Y 0.0 N Y 665 2887 ENSG00000158715 ENSG00000158711 + - 1 1 205649587 205601090 coding utr5p SLC45A3 ELK4 205626979 205577071 - - 0.0 205630989 205593019 - + N - - N SA504 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 6 1.60085217627308 1.12831147363825 1.60085217627308 1.12831147363825 4 - - 0.921830703270474 hTERT 1.0 39946 CTTTTCTTGTGGAACGCGGTCTTGACTCTGTTCGTCACTTCTTTGATTGGGGCTTTGATCCCTGAACCAGAAGTGAAAATTGAAGTTCTCCAGAAGCCATTCATCTGCCATCGCAAGACCAAAGGAGGGGATTTGATGTTGGTCCACTATGAAGGCTACTTAGAAAAGGACGGCTCCTTATTTCACTCCAC|GATGGCTGCAGCTCCTCCAAGTTACTGTTTTGTTGCCTTCCCTCCACGTGCTAAGGATGGTCTGGTGGTATTTGGGAAAAATTCAGCCCGGCCCAGAGATGAAGTGCAAGAGGTTGTGTATTTCTCGGCTGCTG 28 1.0 0.481769242622625 0.202856635852785 Y Y 3.57489529770476 3.58337693299909 3.57489529770476 1 0.992560205109422 0.0 Y 0.0 N Y 1509 5478 ENSG00000106080 ENSG00000136193 + - 7 7 30066300 30029905 coding coding FKBP14 SCRN1 30050203 29959719 - - 0.0 30065928 30008684 - + N - - N SA504 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 12 1.6587143031263198 1.12831147363825 1.6587143031263198 1.12831147363825 4 - - 0.973655313870018 hTERT 1.0 321343 GGGGCAGACCTTGTTGGAGGGCAAGATGCCCATGAAGGGGAAGAGGACGATGGGCAGCAGCGCCGTCACTGAGAGCGGCAGGGCCTCCGTGCACCAGTACACCGCCATGAGCAGGATGACAAACAAGCAGCGGCCTT|CCAGCGCGGCGACAGCGGAGGAGCGCCCGGGCCTCCTGCACCGTCCGCCGTCTGCCAAGCCGCGCCTCCAGCGCCGGGTGCCGGTAGCCCTTGGGGAAGCGGTGCTTGATCACCGCCGCGCGGCCCTGGAAGCGGCCACGGAACA 14 0.7850465898041479 0.568914107697218 0.247554120636352 Y Y 3.54400240599166 3.09077774587819 3.09077774587819 2 0.9927265224007628 0.0108070465038302 Y 0.9927265224007628 N Y 393 747 ENSG00000158296 ENSG00000172315 - + 20 20 45304714 45318418 coding coding SLC13A3 TP53RK 45186463 45313004 - - 0.0 45242364 45317771 + - N - 1.10230301012143 N SA504 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 8 1.27296679077136 1.46584054694884 1.46584054694884 1.27296679077136 4 - 4.5 0.934548327050804 hTERT CGHSA0579 1.0 61439 AACCACCACCAGCCCCACGCAGATCCGGTAACGGATGTTCTCCCAGCACTTCTTCTGGGCCAGGTTCTGTGTAGTCTTGTTGAAGGTTGAGCTCATATCCAGGAGTTGGTCTGAACGCTGCTGCAGTTCGGCCAGCTTCACACCACGCTCCAGGACCTTGCCGAAGTTGTTACGCATAATTTCCGTCACCTCGTTCGCCTGCTGCTGGCACCGCTCCAACTCTATTCCTGCCAT|GTCTCAGAGCAGCCCAGGCCGGTCAGTAAGTGAATTCGCCTAGTCGGCTTCCTCCCAGGGTGGCCCTCAGTTCACTTCCTGCTTGCTCCAACTTTCAGCCTGCCCCCG 6 1.0 0.529841938843664 0.892613790174226 Y Y 3.4001256179563395 3.6046313284685896 3.4001256179563395 0 0.9907677356656948 0.0 Y 0.0 N Y 338 7368 ENSG00000168899 ENSG00000118640 - + 2 2 85820535 85809154 coding utr5p VAMP5 VAMP8 85811531 85788685 + + 0.0 85818848 85804772 - + N - 0.37278807454599 N SA504 1 0.0 1.0 1 0 3 N Y 0.0 0.0 6 1.7165764299795705 1.01258721993177 1.7165764299795705 1.01258721993177 4 - 348.666666666667 0.983652679456207 hTERT CGHSA0565 1.0 61307 TGAGGTGGAGGGAGTTAAGAATATTATGACCCAGAATGTGGAGCGGATCCTGGCCCGGGGGGAAAACTTGGAACATCTCCGCAACAAGACAGAGGATCTGGAAGCCACA|GCAGGAATAGAGTTGGAGCGGTGCCAGCAGCAGGCGAACGAGGTGACGGAAATTATGCGTAACAACTTCGGCAAGGTCCTGGAGCGTGGTGTGAAGCTGGCCGAACTGCAGCAGCGTTCAGACCAACTCCTGGAT 16 0.428434128219145 0.756185399472521 0.81547352867024 Y Y 3.52567938596249 3.49268050191626 3.49268050191626 2 0.9908631342445228 0.0 Y 0.34214566560569204 N Y 7368 338 ENSG00000118640 ENSG00000168899 + - 2 2 85809154 85820535 coding coding VAMP8 VAMP5 85788685 85811531 + + 0.0 85806290 85818848 + - N - - N SA504 1 0.0 1.0 1 0 3 Y Y 0.0 0.0 11 1.47548423475772 1.25367941515362 1.47548423475772 1.25367941515362 4 - - 0.966887926602947 hTERT CGHSA0565 1.0 84245 CACAGCATACACTTTCTTTACACCTAATAACATAAAGCAAGTGAGCGACCTTATCTCTGTGCTTCGTGAAGCTAATCAAGCAATTAATCCCAAGTTGCTTCAGTTGGTCGAAGACAGAGGTTCA|GGTGCCTTGGAACACTATGTTAATTGCCTGGATCTGGTAAACAAGAGGCTACCTTATGGCCTTGCTCAGATTGGAGTGTGTTTTCATCCTGTTTTTGACACTAAGCAGATACGAAATGGTGTTAAAAGTATTGGTGAGAAGACTGAAGCTTCGTTAGTATGGTTTACTCCTCCGAGAACTTCAAACCAGTGGCTTGATTTCT 13 1.0 0.811011236105007 0.17762678832750894 Y Y 3.6852786881538906 3.66273010308932 3.66273010308932 0 0.0 0.0030581039755353 Y 0.0030581039755353 N Y 22553 716 ENSG00000108654 ENSG00000256525 + - 17 17 62504317 62493154 coding coding DDX5 POLG2 62495734 62473902 - - 0.0 62496667 62489138 - + N - - N SA504 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 9 0.781138712518791 1.82265699587718 1.82265699587718 0.781138712518791 4 - - 0.9761242473505708 hTERT 1.0 217112 GGTATTTGAGTACAGCATCCCAGACAAACAGTATACAGATTGGAGCCGGACTGTCCAGAAGCAGGGCTTTCACCACCTTTGGCTCCAAAGGGATACTCCTATCACACACATCAGTTTTCATCCCAAGAGACCGATGCACATCCTTCTCCATGATGCCTACATGTTCTGCATCATTGACAAGTCATTG|TCAAGTTCATCCGAGAAGTAACACCATATATCAAGAAGCCATCATTAGTATCAGATCTGCCGTGGGAAGGTGCAGCCCCCCAGTCACCAAGCTTTAGTGGCAGTGAGGACTCTGGTTC 8 1.0 0.7760381512531729 0.5 Y Y 3.540809910726149 3.51377186168787 3.51377186168787 2 0.99155311842251 0.0 Y 0.0 N Y 3844 3426 ENSG00000141076 ENSG00000168807 + - 16 16 69202941 69342955 coding coding CIRH1A SNTB2 69165194 69221032 + + 0.0 69199429 69279505 + - N - - N SA504 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 5 1.6683579909351998 0.858288214989783 1.6683579909351998 0.858288214989783 4 - - 0.987668922166004 hTERT 1.0 84068 GGGAGCTCTGCAGACACCCATAGTCACCAACCACCTGGTGCAGCTAGTCACTGCTGCCAGCCGGACACCCCAGCAGCCCACCCATCCCTCCACCCGAGCCAAAACTCGCCGTTTCCCTGGCCCAGCTGGGATCCTGCCTCAC|CAGCAGGAGTGGCTGGAATGGGAGGACCGGCGGCGGGCGGCTGCCCAGCAGTGCCGGAGCCGCAGGTGCCCGTCAAGTCCCCGGGCCCGACTCACTAGGCCTCACCGTTCCTGCCGAGACCCAGCTGTCCACCAAGCCCTCTTC 8 0.9565062257068442 0.802318466729842 0.664497430214048 Y Y 3.4106386976703 3.19656484893134 3.19656484893134 0 0.0 0.0 Y 0.0105020366099035 N Y 514 127 ENSG00000125319 ENSG00000161664 + - 17 17 42239844 42256451 coding coding C17orf53 ASB16 42219274 42247815 + + 0.0 42226395 42248215 + - N - 0.13987171529071 N SA504 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 5 1.28261047858024 1.3694036688601 1.3694036688601 1.28261047858024 4 - 0.6 0.973652396563361 hTERT 1.0 312614 CATTCATACTTGTCCAAGTAGTGGTCGTGCATGTACTTGAGCATCATGAAGGACTTCTTCTGGGGCGGGTAGGAGTCGTCCACACCCCGTAGTGGCACTACTGGAATTGGTACAGATGTGTCAGAACCCTCACTTGAGAAGAACTGAACTTTCCCAGGAATTGTCTTGGACCATGTTCT|CCTCCCCGCAAAGGCTTTCTGTCCGATTTCCGTTTCAGGACAGATGAAGTGGAAGGCCCAGGACTGTCTTCCTCCTGTTTGAACACACACAGTAGTGTAAGAAGCAATTAAAA 5 0.913484737857574 0.8120348647329649 0.0157438641705373 Y Y 3.5203902459336605 3.33896748681929 3.33896748681929 0 0.0 0.0 Y 0.0 N Y 4051 3027 ENSG00000131873 ENSG00000131871 - + 15 15 101792137 101817705 intron coding CHSY1 VIMP 101715928 101811022 - - 0.0 101775782 101814625 + - N 5.33729333149807 2.56532718491189 N SA504 1 0.0 1.0 1 0 1 N Y 0.0 0.0 5 1.00294353212289 0.6557707710034301 1.00294353212289 0.6557707710034301 4 20.4 107.8 0.955833518506494 hTERT 1.0 276007 ACCAGCTCTCTGCTGGTTACTCACGATGGCCCTCGGTGACATCCCAGGAATGGGTCTTCCAGATGCTATCGCGACAGAACAATTACACCGTCAACAACAAGAGAAATGGAGTGGCCAAAGTCAACATCTTCTTCAAGGAGCTGAACTACAAAACCAATTCTGAGTCTCCCTCTGTCAC|GGTGCTCCTGGAGCTGTTGGTGGGAATATACCCCTCAGGGGTTATTGGACTGGTCCCTCACCTAGGGGACAGGGAGAAGAGAGATAGTGTGTGTCCCCAAGGAAAATATATCCACCCTCAAAATAATTCGATTTGCTGTACCAAGTGCCACAAAGGAACCTACTTGTACAATGACTGTCCAGGCCCGGGGCAGGATACGGACTGCA 52 1.0 0.7944603289360991 0.597226254059477 N Y 3.45976132345673 3.52680574168821 3.45976132345673 0 0.994396614621334 0.00259740259740238 Y 0.00259740259740238 N Y 20297 11373 ENSG00000111319 ENSG00000067182 + - 12 12 6486896 6451280 coding coding SCNN1A TNFRSF1A 6456009 6437923 - - 0.0 6457893 6443410 - + N - - N SA504 1 0.0 1.0 1 0 2 Y N 0.0 0.0 39 1.7840822446416795 1.79372593245056 1.79372593245056 1.7840822446416795 4 - - 0.990835764536905 hTERT CGHSA0430 1.0 216861 GCGGCGGGCGCAGACAGCGGCGGGCGCAGGACGTGCACTATGGCTCGGGGCTCGCTGCGCCGGTTGCTGCGGCTCCTCGTGCTGGGGCTCTGGCTGGCGTTGCTGCGCTCCGTGGCCGGGGAGCAAGCGCCAG|ACAGAGGTGTTCCAGGCCTTGCAGCGGCTCCATATGACCATCTTCTCCCAGAGCGTCTCACCATGTGGGAAGTTTCTGGCGGCTGGCAACAATTACGGGCAGATTGCCATCTTCAGGTACCCTCTGCCGCTGTCCA 20 1.0 0.979276445996502 0.905301073620732 Y Y 3.35823029066252 3.76951977068882 3.35823029066252 0 0.0 0.0 Y 0.0 N Y 6492 1560 ENSG00000006327 ENSG00000131652 + - 16 16 3072384 3077756 coding coding TNFRSF12A THOC6 3068446 3074028 + + 0.0 3070492 3075709 + - N - 0.572317130390492 N SA504 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 16 0.983656156505144 1.28261047858024 1.28261047858024 0.983656156505144 4 - 7.9375 0.974891642902436 hTERT 1.0 448 CAGATATTTAAAGCTATCTTTCAAACTATTCAAAATCGTAATCCTGTGTGGTATCAGGCACTGACTCACGGTCTTAATGAAGAACAAAGAAAACAGTTACAGGACATAGCAACTCTGGCTGATCAAAGAAGAGCAGCCCATG|TTCGCAACACAAGAACATACAAAAGACCGTAGCGACAACCATTTCTGACGCCTTCAACTTTTAAATCCAAATTACGTGAAACCACAAAGCATCAGTGGTGTCTCCCCGAGGAATCCAAGACCCCCCGGCCGGTTGCCAAGCCGCCGGAATTTCAGCAGGAGAGGAAGGCTCACCCTCCCA 16 1.0 0.889131977814068 0.285015119662885 Y Y 3.41848849077886 3.3310150601850803 3.3310150601850803 4 0.0 0.0 Y 0.0 N N 10707 1802 ENSG00000205339 ENSG00000166478 + - 11 11 9469673 9550071 coding upstream IPO7 ZNF143 9406169 9481866 + + 0.0 9463744 9481687 + - N - - N SA504 3 0.0 1.22222222222222 1 1 1 N Y 0.0 0.0 9 1.22474835172699 1.6104958640819498 1.6104958640819498 1.22474835172699 4 - - 0.913302899881174 hTERT 1.0 229504 GGTTATCATGGCCCTGAGCAACAAGGAGTCCCACGTGCCTTACCGGAACAGCAAACTGACCTACCTGCTGCAGAACTCTCTGGGTGGTAGTGCTAAGATGCTCATGTTTGTGAACATTTCTCCACTGGAAGAGAACGTCTCCGAGTCCCTCAACTCTCTACGCTTTGCCTCCAA|GGCCCCCCCAGGATGCAATGGCGCAGCCCCCCCGGCTGAGCCGCTCTGGTGCCTCCTCACTTTGGGACCCAGCTTCTCCTGCTCCCACCTCTGGCCCCAGGCCTCGGCTTTGGGAGGGTCAAGATGTGCT 4 1.0 0.230956659897442 0.5944340021453299 Y Y 3.3524907226864 2.95215540275154 2.95215540275154 0 0.0 0.0 Y 0.0 N Y 9602 800 ENSG00000237649 ENSG00000112511 + - 6 6 33377701 33384230 coding utr5p KIFC1 PHF1 33359313 33378176 + + 0.0 33374652 33380025 + - N - - N SA504 1 0.0 1.0 1 0 1 N Y 0.0 0.0 5 1.50441529818434 1.08973672240276 1.50441529818434 1.08973672240276 4 - - 0.9455939197577272 hTERT 1.0 324462 ACGATGCTGATAAAGTGGGTCAACAAAACCGGGCGAGATGCCTCTGTCCACACCCTGCTGGATGCCTTGGAGACGCTGGGAGAGAGACTTGCCAAGCAGAAGATTGAGGACCACTTGTTGAGCTCTGGAAAGTTCATGTATCTAGAAG|CCTTACCTCCCGGGTGGAGCTCTCCACAAATGGCCCCCCAAACATGGCAGCCATCCAGTCACAGCTGGAAATCAACAGGGGCTTGTGGGCGCTGATGGTGCCATCATCCAGGATGAAGGTCACATCTGTCCAGAAGAAGCATCAC 33 1.0 0.6494120293897809 0.5641136192007309 Y Y 3.70719543103269 3.37916739693392 3.37916739693392 1 0.0 0.0 Y 0.0 N N 13431 1049 ENSG00000120889 ENSG00000245025 + - 8 8 22926692 22876848 coding intron TNFRSF10B RP11-875O11.1 22877646 22842109 - - 0.0 22880210 22865630 - + N - - N SA504 1 0.0 1.0 1 0 1 N Y 0.0 0.0 14 1.3886910444778502 1.3694036688601 1.3886910444778502 1.3694036688601 4 - - 0.983762853963096 hTERT 1.0 250939 CACGCACGCCGGGCGTGCCAGTTTATAAAGGGAGAGAGCAAGCAGCGAGTCTTGAAGCTCTGTTTGGTGCTTTGGATCCATTTCCATCGGTCCTTACAGCCGCTCGTCAGACTCCAGCAGCCAAGATGGTGAAGCAGATCGAGAGC|AAGGAGGAAACACACCTGCTCCTGCAGAATCGATGGTCAATGCTGTTTGGATTAACAAGGAGAGAAGAAGCTCACTGTCCCTGGAAGAGGCAGATTCTGAGGTGGAGGGGAGGCTGGAGGAGGCTGCCCAGGGCTGCCTTCAGGCCCCCAAGTC 15 1.0 0.9119002250114788 0.0434804343392783 Y Y 3.44247137319745 3.6491271616355 3.44247137319745 0 0.0 0.0 Y 0.0 N Y 27282 1941 ENSG00000136810 ENSG00000188959 + - 9 9 113018920 112970469 coding coding TXN C9orf152 113006091 112952328 - - 0.0 113018692 112963754 - + N - - N SA504 1 0.0 1.0 1 0 1 N Y 0.0 0.0 17 1.24403572734474 1.42726579571335 1.42726579571335 1.24403572734474 4 - - 0.9636267411983628 hTERT 1.0 39864 GGCCTATGGCCTCACCTACTGCTATTCCATCGACCTCTCAGAGCGAGTGGCACTGAAGCTCGATCAGACCTTCCCCTTCAGCCTGATGAGGAGGATATCCGTGTTCAAGTACGTCTCAGGGTCTTCAGCCGAGAGGAGGGCAGCCCAGAGCCGGAA|TTTCATGATCAACATGGGAGACTCCCACGTGGACACCAGCTCCACCGTGTCCGAGGCGGTGGCCGAAGAAGTATCTCTTTTCAGCATGACGGACATGATTCTGTTTTCGCTCATCGTGGGTCTCCTAACCTACTGGTTCCTCTTCA 16 0.8261035630381401 0.25141328574376604 0.17077970958672 Y Y 3.1258962026266803 3.45872825368684 3.1258962026266803 0 0.0 0.0 Y 0.0 N Y 5978 2995 ENSG00000005486 ENSG00000127948 + - 7 7 75518244 75616173 coding utr5p RHBDD2 POR 75471920 75528518 + + 0.0 75513166 75583307 + - N - - N SA504 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 8 1.46584054694884 1.34047260543348 1.46584054694884 1.34047260543348 4 - - 0.937962338081162 hTERT 1.0 139031 CTTGCTCTTGGAAGTTCAGGCTCGGTTGTCTTTTGGGAGCCATGGAGAGTGACTTTTATCTGCGTTACTACGTGGGGCACAAGGGCAAGTTCGGCCACGAGTTCCTGGAGTTTGAGTTTCGACCGGACGGGAAGTTAAGATATGCCAACAACAGCAATTACAAGAATGATGTCATGATCAGAAAAGAGGCT|GGGTTTGCTGCTGAAGGTGTGGAGTCAGGGACAGCCTTCAGTGACATTAATCTGCAGGAGAAGGACTGGACTGACTATGATGAAAAGGCCCAGGAGTCTGTGGGAATCTATGAGGTCACCCACCAGTTTGTGAAGTGCTGATCC 18 0.8902805879604431 0.868498407741033 0.32541687178986306 N Y 3.4369793446773795 3.3755202409218 3.3755202409218 0 0.9930762235449742 0.0 Y 0.0 N Y 923 810 ENSG00000162385 ENSG00000162384 + - 1 1 53704282 53686289 coding coding MAGOH C1orf123 53692564 53679771 - - 0.0 53701249 53681728 - + N - - N SA504 2 0.0 1.16666666666667 1 1 1 Y N 0.0 0.0 6 1.48512792256659 1.1668862248737502 1.48512792256659 1.1668862248737502 4 - - 0.948254415626996 hTERT CGHSA0332 1.0 275788 TTCTGAAATACGATTCAGATGGCTGCGGCTCTGCATTCAATCCAAGTGGGAGGACGCAATTCCTTTGGCGCTAAAGATGGCAACTGAACAAGGAAGAATGAAGTTTACCCGGCCCTTATTCAA|CTGACCACACCCCGGTAGCCACTCCTGCATAAAGCTCTCCCCTCCTGTGACCAGCTGAGGACCTCAGGCTGCAGCGGAGCCATGCCCAGATACACGGTGCACGTACGTGGGGAATGGCTGGCAGTGCCCTGC 8 0.5743523846722299 0.9818443758523508 0.7379875273962321 Y Y 3.62192127872787 3.5110433747387795 3.5110433747387795 5 0.0 0.0 Y 0.0 N Y 8305 292 ENSG00000111144 ENSG00000084110 + - 12 12 96437298 96390143 coding utr5p LTA4H HAL 96394606 96366440 - - 0.0 96396738 96389769 - + N - 9.87693780949301 N SA504 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 6 0.964368780887396 1.20546097610925 1.20546097610925 0.964368780887396 4 - 0.166666666666667 0.921024462648591 hTERT 1.0 373636 TACACCTTCTTCATTGACATCCTGCTCGACACTATCAGGGATGAGATCGCTGGGTGCATCGAGAAGGCCTACGAGAAAATCCTTTTCACTGAGGCCACCCGGATCCTCTTCTTCAACACACCCAAAAAGATGACAGACTACGCCAAGAAG|ACAACCTTGGAGTGTACACTGAAGCCAGGCTTGGTTTACAACAAGGTGAATCCCATCTTTCACCACTGGAGCCTGGGTGACTGCAAGTTTGGACTGACGTTTCAGAGCCCTGCAGAGGCTGATGAGTTCCAGAAGAGCCTGCTGGCTGCGCTGGCCGCACTGGGTCGAGGC 5 0.879935473455093 0.980372364147399 0.638949189648687 N Y 3.2729561383577 3.57592836747465 3.2729561383577 0 0.986708074534161 0.0 Y 0.0 N Y 9981 143 ENSG00000099341 ENSG00000188766 + - 19 19 38874464 38886881 coding coding PSMD8 SPRED3 38865176 38879061 + + 0.0 38872868 38882586 + - N - - N SA504 1 0.0 1.0 1 0 1 Y N 0.0 0.0 6 1.13795516144713 1.31154154200686 1.31154154200686 1.13795516144713 4 - - 0.9789956448106172 hTERT 1.0 385241 GTTCGAGAGATCCAAGAGGAAGAATCCAGCTGCCTATGAAAATGACAAATGAGCAACGCATCCGGATGACGGTTCCCTGTCTCTGAAAGACCTTTCTCTGGAAGAGGAGTCTGCATTGTAGTGTCTCAAAGACACAATAAACTTCCTATGGTCTGCACTGTTGTGATATTACATTTTT|ATAGATGGCTCCCCAATACCAGAAGTGAGTTCGGCAAAGAGAAGGCCACGGAGAATGACCCCATTTTGGAGAGGGGTTTCCCTCAGGCCTATTGGAGCCTCCTGCCGGGATGATTCTGAGTGTATCACAAGGCTATGCAGGT 11 0.7630314789195229 0.878281681997225 0.704277255846938 Y Y 3.4048855493250496 3.716171579866991 3.4048855493250496 0 0.992979684963363 0.0 Y 0.663024878241411 N N 6485 147 ENSG00000164405 ENSG00000164406 + - 5 5 132203723 132210738 utr3p coding UQCRQ LEAP2 132202252 132208014 + + 0.0 132203400 132209642 + - N 13.4095068654442 0.246733623589947 N SA504 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 8 1.67800167874407 1.30189785419798 1.67800167874407 1.30189785419798 4 121.375 0.625 0.974888397697386 hTERT CGHSA0756 1.0 62780 ATGTTGCCTGAGGGAGAGGATCTCAATGAATGGATTGCTGTGAACACTGTGGATTTCTTTAACCAGATCAACATGTTATATGGAACTATTACAGAATTCTGCACTGAAGCAAGCTGTCCAGTCATGTCTGCAGGTCCG|AGGCACTAAAAGAAGAAATCAAAGAGATGCATGGATTGCGGATATTTACCTCTGTCCCCAAACGCTGACCACGCCCTGGCTGCATAGATGCTGCTGCTTAAGACCTTGGATGAACTTCACTGACATCATTCTTCCCTAAGCAGTCACCAAAAAA 6 1.0 0.852745664409979 0.523553320550027 N Y 3.56183091248087 3.3636127166471805 3.3636127166471805 0 0.0 0.0 Y 0.0 N Y 9508 1582 ENSG00000114978 ENSG00000163170 + - 2 2 74406025 74375121 coding coding MOB1A BOLA3 74382165 74362525 - - 0.0 74394141 74362785 - + N - - N SA504 3 0.0 1.5 1 2 1 N N 0.0 0.0 6 1.13795516144713 0.983656156505144 1.13795516144713 0.983656156505144 4 - - 0.946054900110724 hTERT 1.0 63024 CAGTGAAGTTCATCCAAGGTCTTAAGCAGCAGCATCTATGCAGCCAGGGCGTGGTCAGCGTTTGGGGACAGAGGTAAATATCCGCAATCCATGCATCTCTTTGATTTCTTCTTTTAGTG|CCTGAACAAAGAAAATAAAGTGCTTAAAGGAGGTGTTGAGGTGGGCCTCCTCTTGCAGCTGCATCACAGAATCAAAGTGCTGGTGATAAATATGGGCATAAACCCTGAACAGACGCTTTAGAATAGTCTTTGCCACAGACATAAAGT 13 0.8013785555619221 0.66247733070811 0.2767259396932349 N Y 3.33424740824393 3.31063524818594 3.31063524818594 2 0.0 0.0 Y 0.0 N Y 1582 9508 ENSG00000163170 ENSG00000114978 - + 2 2 74375121 74406025 coding intron BOLA3 MOB1A 74362525 74382165 - - 0.0 74362785 74386218 + - N - 3.28701011537111 N SA504 3 0.0 1.6 1 2 1 N N 0.0 0.0 5 0.800426088136539 1.3597599810512295 1.3597599810512295 0.800426088136539 4 - 187 0.915426041824828 hTERT 1.0 108460 GTGCTTTCTCAGCAGGCAGCTTCTGTGGTTAAGCAGGAAGGGGGTGACAATGACCTCATAGAGCGTATCCAGGTTGATGCCTACTTCAGTCCCATTCACTCCCAGTTGGATCATTTACTGGATCCTTCTTCTTTCACTGGTCGTGCCTCCCA|GCAGGGCAGATGATTCTGGACCAGATGAAGCCTGAGGAGCCTTCCAGCTCTAAGATAGCAGGATAGGAGACTTCTAAGATTGGAGCTGCAGAAGACTTGCCAGCCCACCAGCACAATGTCAGGAAGCCATACACCTGCCT 8 1.0 0.6737273795030999 0.149559776648073 Y Y 3.37808089400154 3.3697272397832 3.3697272397832 6 0.992881521209166 0.0 Y 0.466114090687469 N Y 2128 2789 ENSG00000239900 ENSG00000100359 + - 22 22 40764823 40806122 coding utr5p ADSL SGSM3 40742507 40766595 + + 0.0 40761060 40796700 + - N - - N SA504 1 0.426229508196721 1.0 1 0 1 N Y 0.0 0.426229508196721 10 1.08973672240276 1.17652991268262 1.17652991268262 1.08973672240276 4 - - 0.9153735334204058 hTERT 1.0 84326 CCCATGGGAGCCCAGGACCTCATCTCCAAACTGCTCAGGCATAACCCCTCGGAACGGCTGCCCCTGGCCCAGGTCTCAGCCCACCCTTGGGTCCGGGCCAACTCTCGGAGGGTGCTGCCTCCCTCTGCCCTTCAATCTGTCGCCTGATGGTCCCTGTCATTCACTCGG|ACAGCGATCTCCTGGACATGAAAGATGGACAAGCTGATACCCAGCTTGAGCTCTCAAGAGAACAGAAAGGCGTCTCACACTCTCCACAAAGCTAGAAACAAACAACACTGTGGAGGATTTTTACTGGTCATACATTG 12 1.0 0.993512561504603 0.33006244520356 Y Y 3.50165665075055 3.56591914887046 3.50165665075055 0 0.0 0.0 Y 0.0 N N 3323 692 ENSG00000178999 ENSG00000196544 + - 17 17 8113918 8093564 utr3p upstream AURKB C17orf59 8108056 8091652 - - 0.0 8108168 8095818 - + N - - N SA504 1 1.0 1.0 1 0 1 N Y 0.0 1.0 8 1.57192111284646 1.33082891762461 1.57192111284646 1.33082891762461 4 - - 0.9594507803904458 hTERT 1.0 373595 GCGGCGAGGAGCTGTAGGTTTCCTGAGCCGGAGACATGGCCCGCCGTGCGGCGCTCGAGGCGGCCTGGAAGAGCAGAGACAGGGCTGCCGCTGCGGGTCGTGACTCCAGAGTTGGGGCGTCTCTTCTAAGCTCCA|CCAACTGTAGTCATGGTGACTACCGCCCACCAGAAGGACTCAGGGATGCTAGTGAAATGGGAGTCCACCCGGTCAACTTCGGCAAAGTAGACGGCGCTGGAAAAGAGGACCACACCGATGAAGAGGAAAAAGATGAGGAGGCCCAGC 29 0.691122673031275 0.9631020238553192 0.39471221618760494 Y Y 3.64656650855576 3.67849247003875 3.64656650855576 1 0.0 0.0 Y 0.0 N N 253 514 ENSG00000196337 ENSG00000104848 - + 19 19 49562117 49576198 utr5p coding CGB7 KCNA7 49557531 49570675 - - 0.0 49559809 49573612 + - N - 0.0889010870321678 N SA504 1 0.0 1.0 1 0 1 N Y 0.0 0.0 19 1.24403572734474 1.41762210790447 1.41762210790447 1.24403572734474 4 - 0.105263157894737 0.929466899245601 hTERT 1.0 62565 GGGCAGCCCAGGATAGAAGAAGGTGGTATCCTTATAATTACTCCAGACTCTCCTATCCAGCCTGTTGGGAATGGACCCAGTGATACAAACCTGTCCTGGAATTCTACCTGGAGACCAGAGCTGGCCTGAAAATTACTG|AGTGCACATCCTGTAGGTGGCCGGTGGTTCAAGCTGCCAGAGCACCCGACAGGCCCCTCTGACTCTGATCTAGAGGTGATACGTCCCCCGGGTGCCTCTCTTCTATGAAATCCACAGGGATACAGGACAGGACCAAGGAGTATCAGGGTGCTAGGCTTAGTGGCAC 4 0.666580491308421 0.29679347000656703 0.7114356491618159 Y Y 3.6052936758779 3.64503892524591 3.6052936758779 4 0.0 0.0 Y 0.0 N N 1605 1077 ENSG00000144048 ENSG00000144034 + - 2 2 74007284 73964527 utr3p upstream DUSP11 TPRKB 73989311 73956231 - - 0.0 73989733 73967245 - + N - - N SA504 1 1.0 1.0 1 0 1 N Y 0.0 1.0 6 1.3597599810512295 1.33082891762461 1.3597599810512295 1.33082891762461 4 - - 0.92316548450478 hTERT 1.0 139320 GGCGATGTCGGCCGCCGGTGCCCGAGGCCTGCGGGCCACCTACCACCGGCTCCTCGATAAAGTGGAGCTGATGCTGCCCGAGAAATTGAGGCCGTTGTACAACCATCCAGCAGGTCCCAGAACAGTTTTCTTCTGGGCTCCAATTATGAAATG|GAAGACCTATTTGGAGACTGCTTCCTGTCACCATAAAATCCTGAACATTTGTCTTGAACATGAACACTCCAAAAGAAGAATTCCAGGACTGGCCCATAGTCAGAATAGCAGCTCATTTACCAGACCTCATTGTCTATGGACATTTCTCCCCAGAGCGACCCTTTATGGATTATTTTGAC 4 0.604526223216834 0.742565997002957 0.7380142680893379 Y Y 3.51832410639388 3.66745018166468 3.51832410639388 0 0.99348367975819 0.0 Y 0.0 N Y 1241 110 ENSG00000143158 ENSG00000143199 + - 1 1 167906278 167883453 coding intron MPC2 ADCY10 167885967 167778625 - - 0.0 167893735 167874436 - + N - 3.82520052284899 N SA504 1 0.0 1.0 1 0 1 N Y 0.0 0.0 6 1.48512792256659 1.67800167874407 1.67800167874407 1.48512792256659 4 - 0.333333333333333 0.957009674192106 hTERT 1.0 138920 CCCACTTTTCTGAAGAATACCTCGAGCAAAACTGGGGAGGAGGCCATAGCCTCCTTGTGGGAGGAATTGGAGGGACTACATGAAAAAACAACTTTCTGACCCTAAACGAAAGACCTTCTCTCTTCTGTTTTTGGAATCTTTTTGCAGGG|ATGACAGATGGATTTTCACAATTTGGAAATAAAAACATGAGTGAAGGGTTCGGAAGGCAAGTCTCTGGTCCATTACACACTTCCAGAAAAACTTAGTACCCAGAGACTCACATTACTGGGAGTGCTATCTACTCACAAGTGTTGCACTC 6 0.9318306639769308 0.539237472005616 0.795890717844864 Y Y 3.18768198605288 3.0019098707237406 3.0019098707237406 0 0.0 0.0 Y 0.0 N N 1932 873 ENSG00000163393 ENSG00000173212 + - 1 1 116612675 116677861 downstream utr5p SLC22A15 MAB21L3 116519119 116654376 + + 0.0 116621613 116655028 + - N - 0.0238611713665944 N SA504 1 0.0 1.0 1 0 1 N Y 0.0 0.0 6 0.935437717460774 1.34047260543348 1.34047260543348 0.935437717460774 4 - 0 0.950661263052086 hTERT 1.0 296705 ACGTAGCCCCGCCCCTACTAGCTCCGCCCACAGCTGTGTCCGGAAGCAGCAAGCGTGCCTGGGCAGAGACCCCCAGAGTGTAAAGAGGTCCTGGGACAGGCTTTGCACGTTCCACAAGAG|TGTCTCGCTGTGTCGTCTAGACTGGAGTGCAGTGGTGTGATCATGGCTCAACTCCTAGGCTCAAGCGATCCTCCTGCCTCAGCCTCCGGAGTAGCTGCTGGGACTGCAGGAACGTGCCACCATGCCTGGCTCAAACACAAAGTTTTTTCATAAAACTCACTTGGCGGCAAAA 18 1.0 0.2631313006289681 0.0930700322668243 Y Y 3.6000045358490698 3.24669003926412 3.24669003926412 2 0.99169510807736 0.0 Y 0.825597269624573 N N 2709 3120 ENSG00000100949 ENSG00000157379 - + 14 14 24740945 24769039 utr5p intron RABGGTA DHRS1 24734744 24759804 - - 0.0 24740516 24767820 + - N - 0.831882467458593 N SA504 2 0.7573964497041421 1.03571428571429 1 1 2 N Y 0.0 0.7573964497041421 28 0.9065066540341528 1.6297832396996998 1.6297832396996998 0.9065066540341528 4 - 10.2857142857143 0.971047423602714 hTERT 1.0 297012 TCCAAAAAGACAAGACCTATAGCTACCTGAATAAACTACCAGTGAAAAGCGAATATCCCTCTATAAAACTGGTGGTGGAGTGGCAACTTCAGGATGACAAAAACCAAAGTCTCTTCTGCTGGGAAATCCCAGTACAGATC|GCTCTGAGGACTGCTCAGCTGGCCCAGGCCCCCCTCCCCAGCAGCTGCCCCAGAACCATGGAGAGTCTGAGTGAACTACAGAACCCGCTGCTGCCCAGGAGCCCTGCCCATCTCCATGGCCCCTATCCCTACCCGGAGACCCCACCCAGCTGGTCCTGCCAGGAAAAGCTCTACT 52 0.856821270650137 0.768227239910679 0.7845823699783291 N Y 3.4315223707792097 2.9893705042633503 2.9893705042633503 0 0.0 0.0 Y 0.0 N Y 20520 709 ENSG00000119655 ENSG00000183379 + - 14 14 74960880 74892805 coding utr5p NPC2 SYNDIG1L 74942895 74872596 - - 0.0 74947405 74876504 - + N - 45.0008274720728 N SA504 1 0.0 1.0 1 0 1 Y N 0.0 0.0 14 1.31154154200686 1.47548423475772 1.47548423475772 1.31154154200686 4 - 0 0.92699575282288 hTERT 1.0 216339 AAGGACAACAGTTCCAGGGGAAAGCTGCCATTGTGGAGAAGTTGTCTAGCCTTCCGTTCCAGAAAATTCAGCACAGCATCACCGCGCAGGACCATCAGCCCACTCCAGATAGCTGCATCATCAGCATGGTTGTGGGCCAGCTTA|AGGCCCCAGTGCAGAGAGCCCACGGCCATCCAGTGCCTACAATGGGGACCTCAATGGACTTCTGGTCCCAGACCCGCTCTGCTCAGGTGATAGTACCTCAGCAAACAAGACTGGTCTTCGGACCATGCCACCCATTAAC 20 1.0 0.673862941216656 0.7353480529989921 Y Y 3.48015048302568 3.36720643949681 3.36720643949681 1 0.992831087242882 0.0 Y 0.0 N Y 7255 3489 ENSG00000102898 ENSG00000038358 + - 16 16 67906470 67918406 coding intron NUTF2 EDC4 67880635 67906926 + + 0.0 67902502 67909848 + - N - 0.311066291756012 N SA504 4 0.0 1.9375 1 10 1 N Y 0.0 0.0 16 1.42726579571335 1.28261047858024 1.42726579571335 1.28261047858024 4 - 2.75 0.938662486722012 hTERT 1.0 312599 CACGGCCTCCAGCAGCTACAAGACCTGGGGCTTGCATCTCTTCAGCTGGAACCCCTCCTATGCACGGCTGGACAAGCAGGGCAACTTCAACGCCTGGGTTGCGGGGAGCTACGGTAACGATCAGTGGCTGCA|GTTTGCCCTGGGGCCCCAGCCTGGCCCGGGTCACCCTGGCATGAGGAGATGGGCCTGTTGCTCCTGGTCCCGTTGCTCCTGCTGCCCGGCTCCTACGGACTGCCCTTCTACAACGGCTTCTACTACTCCAACAGCGCCAACGACCAGAACCTAGGCAACGGTCATGGCAAAGACCTCCTTAATGGAGTGAAGCTGGT 4 1.0 0.969174582737238 0.7871421493652341 Y Y 3.684245618384 2.9140750653391803 2.9140750653391803 0 0.0 0.0 Y 0.0 N Y 12743 314 ENSG00000140545 ENSG00000140511 + - 15 15 89456642 89438857 coding utr5p MFGE8 HAPLN3 89441916 89420519 - - 0.0 89444782 89430576 - + N - - N SA504 1 0.0 1.0 1 0 1 N Y 0.0 0.0 6 1.29225416638911 1.89980649834817 1.89980649834817 1.29225416638911 4 - - 0.935467499898009 hTERT 1.0 373626 TCATCAGCTACCTGAAGAAGGAGATGCCCTCTGTGTTTGGGAAGGAGAACAAGAAGAAGCAGCTGATCCTCAAACTGCCCGTCATCTTTGCGAAGATTCAGCTGGAACATCACATCTCCCCTGGGGACTTTCCTGATTGCCAGAAAATGCAG|ATGAGGAAACTGAGGCACAGTGAAGTAGCCCGCTCAAGATGAATGATTCTGAGTCTGCACTTCTAGGGTCCTAAAAGTGTATGTTTCTAACATTCCTCTAATGTTCTGTGCTTCCAACTTTGATATTCCG 11 1.0 0.57244290039076 0.6521710744021071 Y Y 3.38383404234679 3.57489529770476 3.38383404234679 0 0.0 0.00353356890459355 Y 0.00353356890459355 N N 50863 3781 ENSG00000024422 ENSG00000105373 + - 19 19 48246390 48260323 coding upstream EHD2 GLTSCR2 48216601 48248793 + + 0.0 48239790 48247796 + - N 0.681553060511071 - N SA504 1 0.370689655172414 1.0 1 0 1 N Y 0.0 0.370689655172414 9 1.43690948352222 1.11866778582938 1.43690948352222 1.11866778582938 4 315.222222222222 - 0.9836013542716272 hTERT 1.0 240212 ATGAAGGCTCAGCTTCCCGCCAGAAAGCCCTGAGCCTAGTAAGCTGTTTCGCGGGGGGCGTCTTTTTGGCCACTTGTCTCCTGGACCTGCTGCCTGACTACCTGGCTGCCATAGATGAGGCCCTGGCAGCCTTGCACGTGAC|GGGCGTCCCCCTGGATACCAGTAAACTGTCCACTGACCAGCGGTTACCCCCATACCCATACAGCTCCCCAAGTCTGGTTCTGCCTACCCAGCCCCACACCCCAAAGTCTCTACAGCAGCCAGGGCTGCCCTCTCAGTCTTGTTCAGTGCAGTCCTCAGGTGGGCAGCCCCCAGGCAGGCAGTCTCATTATGGGACA 8 0.919212832615609 0.589642104708334 0.5855884988911529 Y Y 3.5204207511572005 3.4964073635150803 3.4964073635150803 1 0.99297852008808 0.0 Y 0.0 N Y 4616 2177 ENSG00000143570 ENSG00000160741 + - 1 1 153940188 153931101 coding coding SLC39A1 CRTC2 153931575 153920145 - - 0.0 153934696 153921860 - + N - - N SA505 1 0.0 1.0 1 0 3 Y Y 0.0 0.0 6 1.21643733346904 1.6578863657763503 1.6578863657763503 1.21643733346904 4 - - 0.99155349275301 hTERT CGHSA0331 5.0 238776 GGGGGCCCTGGTGCTGCTGCTGGTGCTCACCCTCCTCTGCAGCCTGGTGCCCATCTGTGTGCTGCGCCGGCCAGGAGCTAACCATGAAGGCT|CAGGGGACTCCTCTCCAGGTTTCTCTAAGGAGATTGCAGCAGCCCTGGCCGGAGTGCCTGGCTTTGAGGTGTCAGCAGCTGGATTGGAGCTAGGGCTTGGGCTAGAAGATGAGCTGCGCATGGAGCCACTGGGCCTGGAAGGGCTAAACATGCTGAGTGACCCCTGTGCCCTG 17 1.0 0.8887337516381172 0.4575055403152871 Y Y 3.71145150129163 3.5184919402632304 3.5184919402632304 0 0.989171297809742 0.0 Y 0.0 N Y 4616 2177 ENSG00000143570 ENSG00000160741 + - 1 1 153940188 153931101 coding coding SLC39A1 CRTC2 153931575 153920145 - - 0.0 153935005 153920805 - + N - - N SA505 1 0.0 1.0 1 0 3 Y Y 0.0 0.0 9 1.5107366883405802 1.25567724745191 1.5107366883405802 1.25567724745191 4 - - 0.99031219296687 hTERT CGHSA0331 5.0 678340 CGCCTCGTCCCCGTCCTCGGGCCGCGCCCCCGGCGCCGCGCCCTCCGCCGCCGCCAAGAGCCACCGCTGTCCCTTCCCGGACTGCGCCAAAGCCTACTACAAGTCCTCGCACCTAAAGTCGCACCTGCGGACGCACACA|GGGCTGGGTTACGACCCCTACAACCCTGAGCTGCCCAAGCCCCCCGCGCAGAGGGAGAATGGCACCCTGGGCCTGGGGGAGGAGCCGCGCCCGGATGTGCTGGAGTTGGAGCTGGTCAACCAGGCCATCGAGGCCGTGCGCAGT 22 1.0 0.845336624820289 0.635438123113439 Y Y 3.5246463161926003 3.3576612292090497 3.3576612292090497 1 0.0 0.0 Y 0.0 N Y 2219 2782 ENSG00000129911 ENSG00000079313 + - 19 19 1863567 1848452 coding intron KLF16 REXO1 1852399 1815248 - - 0.0 1863040 1828630 - + N - 8.54177104708915 N SA505 1 0.359712230215827 1.0 1 0 1 Y Y 0.359712230215827 0.0 6 1.36358701090481 1.4126369033834 1.4126369033834 1.36358701090481 4 - 2.33333333333333 0.9882381325971468 hTERT 5.0 489401 AGTGCTGTTCCTCAGCATTTCTGGAGGCTCCGTTTCTGGCAGGAAATCATAATCTAGGTACTCATATTCGGTGGCCTGTCTCCGGTCCCGGGCAAGCAGGGGACCCAAGGCTTTCTCGGCTTCATCTGCCCAGGTGTCCCACAGCTGCAAGCTGTTGCCAGGGCCCAGTAGGATCAGCAACAGGAGGAGTTGCAGAGGCATGGCACCAC|ACTGGCCGTGTCTGTGGTTTTCTTGGGGATGCTGATCAGGTCGCACTTCTTGTTTGCAGTGGGCTTGCTATCCAGAATGTTCTTCTTGACCACCTTGAGATCCCTGTTTTTGCCTGGAATGTACCCGTGCTTCAAGGAGATGAGGATTGGGTCTGCATTCTTGCCTTCGAACCACTCTTCT 245 0.854116988841514 0.976045378593723 0.5029201237586529 Y Y 3.34520999103131 3.4048456965317007 3.34520999103131 0 0.0 0.0 Y 0.0 N Y 6017 10204 ENSG00000110876 ENSG00000110880 - + 12 12 109027735 109125372 utr5p coding SELPLG CORO1C 109015686 109038885 - - 0.0 109018088 109042381 + - N - 1.66969762918657 N SA505 1 0.0 1.0 1 0 1 N Y 0.0 0.0 112 2.07971544109222 1.85408593569071 2.07971544109222 1.85408593569071 4 - 4.73214285714286 0.98692893081984 hTERT 5.0 491513 TGGAATGTGGGAACAGGGGAAGCCCTTATAAACTTGGACGATATGCATTCAGACATGATTTACAATGTGAGCTGGAACCGGAATGGCAGTCTGATCTGCACAGCTTCCAAAGACAAGAAAGTGAGAGTCATTGATCCCAGGAAACAAGAGATTGTTGCTG|TGCCATGCCTCTGCAACTCCTCCTGTTGCTGATCCTACTGGGCCCTGGCAACAGCTTGCAGCTGTGGGACACCTGGGCAGATGAAGCCGAGAAAGCCTTGGGTCCCCTGCTTGCCCGGGACCGGAGACAGGCCACCGAATATGAGTACCTAGATTATGATTTCC 51 0.8308938550570499 0.8701245491603671 0.6357869031703729 Y Y 3.43105836246279 3.30434773350738 3.30434773350738 0 0.0 0.00307692307692309 Y 0.00307692307692309 N Y 10204 6017 ENSG00000110880 ENSG00000110876 + - 12 12 109125372 109027735 coding coding CORO1C SELPLG 109038885 109015686 - - 0.0 109052514 109018088 - + N - - N SA505 1 0.0 1.0 1 0 2 N Y 0.0 0.0 21 1.4911167313491398 1.63826640878491 1.63826640878491 1.4911167313491398 4 - - 0.99031219296687 hTERT 5.0 491610 GTTCCTCAGCATTTCTGGAGGCTCCGTTTCTGGCAGGAAATCATAATCTAGGTACTCATATTCGGTGGCCTGTCTCCGGTCCCGGGCAAGCAGGGGACCCAAGGCTTTCTCGGCTTCATCTGCCCAGGTGTCCCACAGCTGCAAGCTGTTGCCAGGGCCCAGTAGGATCAGCAACAGGAGGAGTTGCAGAGGCATGGCACCT|GGCAATCTCACATTTGTTAACATCAAGTCCCCTCTTGGGCATGTAACCCATCCCTCTCTGAGGCTCCTTGCTGCTGAATGTGTTGAGGTAGTGGACGTACGGGGATTCATCCGTGATCTCAAAATAGCGAATACTG 24 1.0 0.952162646919705 0.7278414515157209 Y Y 3.5220458103195096 3.48809356209009 3.48809356209009 2 0.0 0.0 Y 0.0 N Y 6017 10204 ENSG00000110876 ENSG00000110880 - + 12 12 109027735 109125372 intron coding SELPLG CORO1C 109015686 109038885 - - 0.0 109018088 109046048 + - N 137.419508289829 1.35264188114795 N SA505 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 8 1.9521857206478896 1.2654872259476295 1.9521857206478896 1.2654872259476295 4 1.75 69.875 0.9918318677859252 hTERT 5.0 491620 TCCTTGTCCTCCCTCTGCACAAGACTGGTCGAATTGACAAATCTTACCCTACAGTATGTGGCCACACAGGACCAGTGCTGGACATAGACTGGTGCCCACATAACGATCAGGTCATTGCCAGCGGTTCAGAGGACTGCACGGTCA|TGGTGCCATGCCTCTGCAACTCCTCCTGTTGCTGATCCTACTGGGCCCTGGCAACAGCTTGCAGCTGTGGGACACCTGGGCAGATGAAGCCGAGAAAGCCTTGGGTCCCCTGCTTGCCCGGGACCGGAGACAGGCCACCGAATATGAGTACCTAGATTATGATTTCCTGCCAGAAACGGAGC 57 0.9717727811356108 0.819838304004134 0.5280279893932971 Y Y 3.65016023140539 3.41584813211242 3.41584813211242 0 0.0 0.0 Y 0.0 N Y 10204 6017 ENSG00000110880 ENSG00000110876 + - 12 12 109125372 109027735 coding coding CORO1C SELPLG 109038885 109015686 - - 0.0 109072048 109018088 - + N - - N SA505 1 0.0 1.0 1 0 2 N Y 0.0 0.0 21 1.43225686037483 1.76579612922925 1.76579612922925 1.43225686037483 4 - - 0.99031219296687 hTERT 5.0 560081 GAGCTGGCCCGCTGTTCCATTGTGAGCTACCATGGCAATGTCCTCTATGACAAGTACATCAGGCCTGAGATGCCCATCGCTGACTACCGTACCCGCTGGAGTGGCATCACTCGGCAGCACATGCGCAAGGCTGTCCCCTTCCAGGTGGCCCAGAAAGAG|ATCCTGCAGCTCCTGAAAGGCAAGCTGGTGGTGGGTCATGACCTGAAGCACGACTTCCAGGCACTGAAAGAGGACATGAGCGGCTACACAATCTACGACACGTCCACTGACAGGCTGTTGTGGCGTGAGGCCAAGCTGGACCACTGCAGGCGTGTC 7 1.0 0.799605034675518 0.847459333774266 Y Y 3.4655144718019804 3.35975787397237 3.35975787397237 0 0.0 0.207643622200584 Y 0.20125365141187893 N Y 2139 399 ENSG00000181026 ENSG00000172183 + - 15 15 89175513 89199714 coding coding AEN ISG20 89164527 89179384 + + 0.0 89169980 89195341 + - N - - N SA505 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 6 1.2654872259476295 1.35377703240909 1.35377703240909 1.2654872259476295 4 - - 0.975846289152184 hTERT 5.0 451006 AAACTCACCATCTGAAAGGGAATCAGGCCTGTAGCTCGGATATGCACTGGCTCATCAACAAGTGCACTCACAGGGGTAGCTGTCAACTGGATCATTTTTTTAGTGTGGCACCTGGGATGATTCTTCAGGAATATCTTCAGCAAAACCTCAAAACC|TGAATCGAGACCAAAATTCTCTACATGGTGTCCCTGAGACTGTCCACATGAAGACTCTTCTGGTAATGCCCGACACAGATCGCGCCGCCATCTTCGATGAGATCCACGGGCCTGAGCGCAGCCTTCAGCCAGCAGTGACGCGCCCAGA 31 1.0 0.787818340737293 0.583025746006227 Y Y 3.48912663185998 3.61360747730288 3.48912663185998 0 0.0 0.0 Y 0.0 N Y 2234 759 ENSG00000136881 ENSG00000136897 - + 9 9 104145801 104160896 utr5p coding BAAT MRPL50 104122699 104149915 - - 0.0 104133745 104160783 + - N - 0.379123439925489 N SA505 2 0.0 1.29032258064516 1 9 1 N Y 0.0 0.0 31 1.5695965593148795 1.17719741948616 1.5695965593148795 1.17719741948616 4 - 4.32258064516129 0.937837713632275 hTERT 5.0 678576 ACGGCTGCTGCCCCGACACTGCGGCGCCTGGCGCTTTCCTCACGGTCTGGGCTTGAGAGGAAGCCGGAGTCCTTGTCTAAAGTCAGCATCATCAAGAGACTGGGCGCAGCTGCCCTTGTGCCCGAGGCCCAGGACAGCCAGGTCACCAGCACCAAGA|GTGAATACATCAAGACCTGGAGGCCACGGTACTTCCTGCTGAAGAGCGACGGCTCCTTCATTGGGTACAAGGAGAGGCCCGAGGCCCCTGATCAGACTCTACCCCCCTTAAACAACTTCTCCGTAGCAGAATGCCAGCTGATGAAGACCGAGAGGCCGCGACCCAACACCTT 13 1.0 0.8261625176126559 0.296292847258028 N Y 3.19293127328835 3.90657048781565 3.19293127328835 1 0.0 0.0 Y 0.00303030303030316 N Y 1173 6714 ENSG00000160392 ENSG00000105221 + - 19 19 40854434 40791443 coding coding C19orf47 AKT2 40825443 40736224 - - 0.0 40827935 40762961 - + N - - N SA505 1 0.0 1.0 1 0 1 Y N 0.0 0.0 10 1.59902649480204 1.61864645179347 1.61864645179347 1.59902649480204 4 - - 0.9537017499846808 hTERT 5.0 107082 CTTGCCTGATGTTCAAACACCTGGTACACAAACCATCGGAGGAGAGAGTAAGAGAAATAATTATCAATGCTGTTCGGATAGAACAGGAGTTCCTCACTGAGGCCTTGCCTGTGAAGCTCATTGGGATGAATTGCACTCTAATGAAGCAATACATTGAGTTTGTGGCAGACAGACTTATGCTGGAACTGGGTTTTAGCAAGG|TGCTGGGAGACCGTGAAGTGCAAAGCAGATGGAGTCCAGGCCCTCGGGGAGACAGCACGCCAGTGAGGGAGATGGAGACCAATCACCCACCCAGTGTGCGGTAAGTCAGACGGTGACAA 33 0.752437726391724 0.901987159362647 0.585461078858454 Y Y 3.51360402781852 3.43105836246279 3.43105836246279 3 0.99162281735124 0.0 Y 0.6649126940495821 N Y 10529 421 ENSG00000171848 ENSG00000163009 + - 2 2 10271545 10351851 coding utr5p RRM2 C2orf48 10262455 10281509 + + 0.0 10269281 10281981 + - N - 0.0663408097217605 N SA505 2 1.0 1.4166666666666698 1 5 1 N Y 0.0 1.0 12 1.80503604321212 0.9123280001017772 1.80503604321212 0.9123280001017772 4 - 0.0833333333333333 0.9278473402331948 hTERT CGHSA0554 5.0 699918 ATGGCAGCATTTGTCTTGATATTCTACGATCACAGTGGTCTCCAGCACTAACTATTTCAAAAGTACTCTTGTCCATCTGTTCTCTGTTGTGTGATCCCAATCCAGATGATCCTTTAGTGCCTGAGATTGCTCGGATCTACAAAACAGATAGAGAAAA|AGTGAAGACATTTCCACCTGGACACCTGACCATGTGCCTGCCCTGAGCAGCGAGGCCCACCAGGCATCTCTGTTGTGGGCAGCAGGGCCAGGTCCTGGTCTGTGGACCCTCGGCAGTTGGCAGGCTCCCTCTGCAGTGGGGTCTGGGCCTCGGCCCCACCATGTCGAGCCT 30 0.8551691567105221 0.449373533997301 0.642778241324328 Y Y 3.58424216889964 3.47080361183081 3.47080361183081 1 0.9936499332081392 0.0 Y 0.0 N Y 5513 1392 ENSG00000131508 ENSG00000171604 + - 5 5 139008018 139063467 coding utr5p UBE2D2 CXXC5 138906016 139026884 + + 0.0 139003046 139059949 + - N - - N SA505 1 0.0 1.0 1 0 1 N Y 0.0 0.0 11 1.4813067528534198 1.66769634427206 1.66769634427206 1.4813067528534198 4 - - 0.9882381325971468 hTERT 5.0 239845 GAAATGAAAAGATTGCTGTCCACTGCACAGTTCGAGGGGCCAAGGCAGAAGAAATCTTGGAGAAGGGTCTAAAGGTGCGGGAGTATGAGTTAAGAAAAAACAACTTCTCAGATACTGGAAACTTTGGTTTTGGGATCCAGGAACACATCGATCTGGGTATCAAATATGACCCAAGCATTGGTATCTACGGCCTGGACTTCTATGT|GCTATTGAAATATTTGAAGAAACTCTCCACCCTGCCTATTACAGTAGACATTCTTGCGGAGACTGGGGTTGGGAAAACAGTAAATAGCTTGCGAAAACACGAGCATGTTGGAAGCTTTGCCAGGGACCTAGTGGCCCAGTGGAAGAAGCTGGTTCCTGTGGAACGAAATGCTGAGCCTGATGAACAGGA 54 0.893874162653439 0.991131085292013 0.4636764329547671 N Y 3.8097595335968 3.3551310813528503 3.3551310813528503 1 0.9947223896590992 0.0 Y 0.957779117272788 N Y 41728 7523 ENSG00000142676 ENSG00000011007 + - 1 1 24022915 24088549 coding coding RPL11 TCEB3 24018269 24069645 + + 0.0 24021281 24075511 + - N - - N SA505 4 0.0 2.14634146341463 1 30 2 Y N 0.0 0.0 41 2.05028550560507 1.7854160862206798 2.05028550560507 1.7854160862206798 4 - - 0.9461083042865932 hTERT CGHSA0320 5.0 184835 GGTTCCCAGAAGGAGACCGCTAAGCTGCGATGCTGCGTCGCAGGCGGGAAGCAATTATCCCCGCTGTTGGAACTGCGGCGGCCCATGGGGCCCCGGGCGGGAGGACAGGTTCTTCTGCCCACAGTGCCGAGCGCTGCAGGCACCTGACCCCACTCGAGACTACTTCAGCCTTATGGACTG|TAAATCTTGCTGCTGCCCACTCTGGGTTTGCACTGCCTTTATGAGCCATAACACCCACCGCGAGGATCTGCTGCTTCATTCCTGAAGTCAGCAAGATCACAAACGCACCTGGCAGAACAAACAACTCCTGACAGGCCACCTTTA 8 0.91892917757861 0.824245966380014 0.9027295461994592 Y Y 3.4952810077893504 3.08148430784579 3.08148430784579 0 0.0 0.0 Y 0.0 N N 132 271 ENSG00000100209 ENSG00000159873 + - 22 22 29153503 29185283 coding upstream HSCB CCDC117 29138019 29168662 + + 0.0 29138319 29165397 + - N - - N SA505 1 1.0 1.0 1 0 1 N Y 0.0 1.0 6 1.38320696789624 1.4420668388705502 1.4420668388705502 1.38320696789624 4 - - 0.95622614696481 hTERT 5.0 141033 AGTGTATAACTACAATCACCTAATGCCCACAAGGTACTCTGTGGATATCCCCTTGGACAAAACTGTCGTCAATAAGGATGTCTTCAGAGATCCTGCTCTTAAACGCAAGGCCCGACGGGAGGCCAAGGTCAAGTTTGAAGAGA|GGCCCTCCACGCCCTTCAGGAGGAGCAGGCCAGACTCAAGATGAGGCTGTGGGACCTGCAGCAGCTGAGAAAGGAGCTCGGGGACTCCCCCAAAGACAAGGTAAGGTGGGAGATCTGGTGTTGTTTGGTAAAAA 119 1.0 0.918404417099057 0.43332689351592696 Y Y 3.30488209984069 3.28655907981151 3.28655907981151 0 0.0 0.0 Y 0.0 N Y 38191 1304 ENSG00000131469 ENSG00000068079 + - 17 17 41154976 41166473 coding intron RPL27 IFI35 41150290 41158742 + + 0.0 41154800 41164196 + - N - 0.0687059628652217 N SA505 2 0.0 2.0 2 5 2 N Y 0.0 0.0 5 1.53035664533201 1.2458672689561898 1.53035664533201 1.2458672689561898 4 - 5.4 0.949394162122583 hTERT 5.0 141679 CTGCCATGGGCAAGAAGAAGATCGCCAAGAGATCAAAGATAAAATCTTTTGTGAAAGTGTATAACTACAATCACCTAATGCCCACAAGGTACTCTGTGGATATCCCCTTGGACAAAACTGTCGTCAATAAGGATGTCTTCAGAGATCCTGCTCTTAAACGCAAGGCCCGACGGGAGGCCAAGGTCAAGTTTGAAGAGAG|GCCCTCCACGCCCTTCAGGAGGAGCAGGCCAGACTCAAGATGAGGCTGTGGGACCTGCAGCAGCTGAGAAAGGAGCTCGGGGACTCCCCCAAAGACAAGGTCCCATTTTCAGTGCCCAAGATCCCCCTGGTATTCCGAGGACACACCCAGCAGGACCCGGAAGTGCCTAAGTCTTTAGTTTCCAAT 116 1.0 0.953031681684396 0.467670354923625 Y Y 3.2693225627147204 3.28655907981151 3.2693225627147204 0 0.0 0.0 Y 0.0 N Y 38191 1304 ENSG00000131469 ENSG00000068079 + - 17 17 41154976 41166473 coding coding RPL27 IFI35 41150290 41158742 + + 0.0 41154800 41164196 + - N - - N SA505 5 0.0 1.5833333333333302 1 24 2 N Y 0.0 0.0 60 1.97180567763932 1.85408593569071 1.97180567763932 1.85408593569071 4 - - 0.949394162122583 hTERT 5.0 530678 CGCTTATCCCCTGGATTGGTCTATTGTGGATTCTATACTGATGGAACGTCGAATTAGACCATGGATTAATAAGAAAATCATAGAATATATAGGTGAAGAAGAAGCTACATTAGTTGATTTTGTTTGTTCTAAGGTTATGGCTCATAGTTCACCCCAGAGCATTTTAGATGATGTTGCCATGAA|TGACAATAGAGAACGGCAGGAGCACAACGACAGACGGAGCCTTGGCCACCCTGAGCCATTATCTAATGGACGACCCCAGGGTAACTCCCGGCAGGTGGTGGAGCAAGATGAGGAAGAAGATGAGGAGCTGACATTGA 21 1.0 0.570131905757143 0.865952244375653 Y Y 3.41526549028982 3.20078106639692 3.20078106639692 1 0.0 0.0 Y 0.0 N Y 6715 5641 ENSG00000119707 ENSG00000080815 + - 14 14 73588122 73690399 intron coding RBM25 PSEN1 73525144 73603126 + + 0.0 73581041 73637505 + - N - - N SA505 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 10 1.72655621524637 1.28510718293906 1.72655621524637 1.28510718293906 4 - - 0.973972961227544 hTERT 5.0 530677 ATGGAACGTCGAATTAGACCATGGATTAATAAGAAAATCATAGAATATATAGGTGAAGAAGAAGCTACATTAGTTGATTTTGTTTGTTCTAAGGTTATGGCTCATAGTTCACCCCAGAGCATTTTAGATGATGTTGCCATG|ACCTAATCTGGGAGCCTGCAAGTGACAACAGCCTTTGCGGTCCTTAGACAGCTTGGCCTGGAGGAGAACACATGAAAGAAAGAACCTCAAGAGGCTTTGTTTTCTGTGAAACAGTATTTCTATACAGTTGCTCCAATGACAGAGTTACCTGCACCGTTGTCCTACTTCCAGAATGCACAGATGTCTGAGG 13 1.0 0.254298097056391 0.25808992847019896 Y Y 3.35463656781289 3.6868062714637406 3.35463656781289 0 0.0 0.0 Y 0.0 N Y 6715 5641 ENSG00000119707 ENSG00000080815 + - 14 14 73588122 73690399 coding utr5p RBM25 PSEN1 73525144 73603126 + + 0.0 73581041 73614503 + - N - - N SA505 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 6 1.05947767753755 1.64807638728063 1.64807638728063 1.05947767753755 4 - - 0.9438745130202522 hTERT 5.0 490207 TGACAGCATCATTTACAGGTTCACACTGTTCCACCTGAGTCTTCATATTATGCTCAAAATATGGACCTATCAGAAAATAGTTCTCTCCCCATTCATCTGCTGTTGTTTTGGCCTTTGTCTGAATCACAGTATAGATGCCTCCAA|CTTAGCCTGAAATATAAGTTGATGTTTTTTCTCCAAGTTGTTGTCATCCGTTGACTTTGCTTGTGTTATGTTTTCAGGTAAGAAGTTCTCTTTTTCAGTGGTTAAATTGAACCAATCCTTTCTTTAATGGCTCTAGATATGGAGAAAAAA 4 1.0 0.71424454300877 0.368330895770255 Y Y 3.69937614314766 3.39065076568547 3.39065076568547 6 0.0 0.0 Y 0.0 N N 209 34133 ENSG00000111713 ENSG00000111716 - + 12 12 21757781 21910791 coding downstream GYS2 LDHB 21689123 21788276 - - 0.0 21733457 21783595 + - N - - N SA505 1 0.0 1.0 1 0 1 N Y 0.0 0.0 5 1.37339698940052 1.16738744099045 1.37339698940052 1.16738744099045 4 - - 0.9525111509498708 hTERT 5.0 239586 CCTTGGACAGTTCCCAGACACGCCGGTTGGTGGCCTCCGGGATCTTCTGTTCTGAGCCCTCATCCTCAGTTGCCTTCTTCTCCGGGGAGCGGTAAATGCACATGGGATTCATGGGAATGTCCCGCGGCTTGGCTGTGCAGATGTCCACAGGGCTCCCGTGACAGGTCACGCAGTCCCAGAAGCCAATGAGCAGCAAGGACAAAAGATAAACCTTCCT|GAATGTCAATGTAAGGTCCTCAGCCGGAACCTTGTTTTGTGGTTCTGGTTGTCCATTTTCTGCTTGTTTACTTGTATTCAGTTTGCTTTTCATGTCCAGAGAACACTGGTTTTCCTTTGAAAGAGAAGGAA 12 0.9367200739944208 0.922536351925372 0.754511535520902 N Y 3.41103992525442 3.76848670091893 3.41103992525442 0 0.0 0.0 Y 0.00286532951289387 N Y 240 1728 ENSG00000117601 ENSG00000135870 - + 1 1 173886516 173991435 intron coding SERPINC1 RC3H1 173872947 173900352 - - 0.0 173884057 173910403 + - N 25.7705564480794 0.486475718446445 N SA505 1 0.0 1.0 1 0 1 N N 0.0 0.0 8 1.4126369033834 1.17719741948616 1.4126369033834 1.17719741948616 4 0.25 2.25 0.988654946317008 hTERT 5.0 239640 GCCTGAGTGGGCGCTGCTGGGCCGGCTCCCTCTGGCTTTTTAAGGACCCCTGTGCCGCCCCCAACGAAGGCTTCTGCTCCGCCGGAGTCCAAACGGAGGCTGGAGTGGCTGACCTCACTTGGGTTGGGGAGAGAGGTATTCTAGTGGCCTCCGATTCA|GGTGCTGCCCATAAACTCGTGTGTTATTTCACCAACTGGGCACACAGTCGGCCAGGCCCTGCCTCGATCTTGCCCCATGACCTGGACCCCTTTCTCTGCACCCACCTGATATTTGCCTTTGCCTCAATGAACAACAATCA 25 0.933286288319107 0.744891723713457 0.7860541300778879 N Y 3.53039946453785 3.46448140203209 3.46448140203209 1 0.992881032011467 0.0 Y 0.0 N Y 2841 774 ENSG00000116455 ENSG00000085465 + - 1 1 111991998 111970399 coding coding WDR77 OVGP1 111982512 111956936 - - 0.0 111991241 111969263 - + N - - N SA505 1 0.0 1.0 1 0 2 Y N 0.0 0.0 12 1.63826640878491 1.5107366883405802 1.63826640878491 1.5107366883405802 4 - - 0.99155349275301 hTERT CGHSA0371 5.0 240500 TGGCATCCTCAGCAAAGTGAAGTCTTTGTCTTTGGTGATGAGAATGGGACAGTCTCCCTTGTGGACACCAAGAGTACAAGCTGTGTCCTGAGCTCAGCTGTACACTCCCAGTGTGTCACTGGGCTGGTGTTCTCCCCACACAG|GTGCTGCCCATAAACTCGTGTGTTATTTCACCAACTGGGCACACAGTCGGCCAGGCCCTGCCTCGATCTTGCCCCATGACCTGGACCCCTTTCTCTGCACCCACCTGATATTTGCCTTTGCCTCAATGAACAACAATCAGATTGTTGCTAAGGATCTCCAGGATGAG 6 0.960492235212419 0.7788144111280949 0.905163144745908 N Y 3.1459146398350497 3.4451253122330296 3.1459146398350497 0 0.9930294785600252 0.0 Y 0.0 N Y 2841 774 ENSG00000116455 ENSG00000085465 + - 1 1 111991998 111970399 coding coding WDR77 OVGP1 111982512 111956936 - - 0.0 111985275 111969263 - + N - - N SA505 1 0.0 1.0 1 0 2 Y N 0.0 0.0 5 1.3930169463919602 1.28510718293906 1.3930169463919602 1.28510718293906 4 - - 0.9702256058024472 hTERT CGHSA0371 5.0 699048 CATCCTTCCATCCCTCCAAAAAATTTACCCAGAGTCTTTTAGTCCTGCTATACAGCTGCACCTTGTACATCAAGCTCCATGTAATGTTCCTCCTTACCTCTCAAAGAATGAATCAAACCTTGGGGACCTCTTACTGGGCTTTCTTAAATATTATGCTACAGAATTTGA|ACAGATGTAAGCCAGTCAGTAGCTGGGCTTCATCTTGCATATTCCTAGGAGGAAATATGTTTATGAAGTGATGGCAAACGCGGCTGCTGCATTGGTCAGGAATGATAACCGCAGAGGAATTTAAACCCAG 15 0.894931408981158 0.8274482192662691 0.181071976216504 Y Y 3.2668017624283303 3.63721963736088 3.2668017624283303 0 0.0 0.0 Y 0.0 N N 675 3005 ENSG00000164329 ENSG00000164309 + - 5 5 78982471 79096063 coding intron PAPD4 CMYA5 78907943 78985700 + + 0.0 78964851 79023365 + - N - 0.0304568433780962 N SA505 1 0.0 1.0 1 0 1 N Y 0.0 0.0 8 1.6578863657763503 1.03985772054611 1.6578863657763503 1.03985772054611 4 - 0.25 0.94719399926051 hTERT 5.0 141776 AGAGTCTGGCAATAGCCAAGAACTGGCCAGGGGCCCCCAGGAGAGGACCCCCTGTGGGCCTGCTCTGCGGGAAGGCGAGGCTGCCGCTGTGGAGGGCCCGTGCCCGAGCCAGGAGTCCCTGTCCCAGGAGGAAAACCCGGAACCCACGGAGGATGAAAGGA|AGGAGCAGGAGCGGCTTCGCTTGGAGCAGGAGCGAGAGCAGGAACAGAAGAAGGCCAATAGCCTGGCCAGGCTGGCACATACCCTTCCTGTGGAGGAACCCCGCATGGAGGCGCCACCCCTGCCTCTGTCTCCACCGGCTCCCCCGCCGGCACCCCC 31 0.98707196264634 0.2384426185976689 0.5423808024847371 Y Y 2.94955489687844 3.00822273295264 2.94955489687844 1 0.0 0.0 Y 0.0 N N 1016 4178 ENSG00000127804 ENSG00000070444 + - 17 17 2415185 2304412 coding coding METTL16 MNT 2319343 2287354 - - 0.0 2323551 2298748 - + N - 3.65045383171029 N SA505 1 0.28571428571428603 1.0 1 0 1 Y Y 0.0 0.28571428571428603 11 1.53035664533201 1.5107366883405802 1.53035664533201 1.5107366883405802 4 - 13.0909090909091 0.941538311077686 hTERT 5.0 417891 GTCACTTCCTTACTGGAAACTTCATCTCAACCAATGCGTCCGTCATTATTGAACAGCTCATGATATTCCTGCTCAGCAGAATTGCACAGCAGTTGTTGGTAGCAAGTCAAGTCCCAGACTCTGAGAGTGTGACAGATTGCCCCCACAGCGCTGCTTCTCCAGTGCTGGGGCAGCATGCCGAGTGCCCCTGTTCGTGGTGACTG|ACCGTTGGAAATGGTCACACATTCCTTCTCCCCTTAGAGCGAACACTGTCATAACCACTGAAGCGCGGGCCGAGGAGCGCCACATCGGCCACAGGCTTTGTTGCCCCGCCTTCAAAGCCACTGCGCGTGCGCATTGCTTTGACTTCACG 17 1.0 0.910448580121492 0.5558374085443871 Y Y 3.4367716580146896 3.7255184510618697 3.4367716580146896 0 0.9933076030952328 0.0 Y 0.0 N Y 497 197 ENSG00000147119 ENSG00000230844 - + X X 46457843 46407671 utr3p intron CHST7 ZNF674-AS1 46433219 46404928 + + 0.0 46457195 46405062 - + N - 0.738133403961363 N SA505 1 0.0 1.0 1 0 1 N Y 0.0 0.0 10 2.0110455916222 1.4911167313491398 2.0110455916222 1.4911167313491398 4 - 1.9 0.98692893081984 hTERT 5.0 142051 CACAGCTGTTGAACTTCCCACCTTATACCAGAAATCAGATAGTCACTATTTTGCAAGATCGACTTAATCAGGTATCTAGAGATCAGGTTCTGGACAATGCTGCAGTTCAATTCTGTGCCCGCAAAGTCTCTGCTGTTTCAGGAGATGTTCGCAAAGCACTGGATGTTTGCA|GCATCACAGGACATGGCCCCCTCAGCCACCTAGCTGGGGCCCATCTAGGAGTGGCATCTTTTTTGGTGCCCTGAAGGCCAGCTCTGGACCTTCCCAGGAAAAGTGCCAGCTCACAGAACTGCTTGACCAAAGGACCGGCTCTTGAGACATCCCCCAACCCACCTGGCCC 27 0.836562370555086 0.786710644486475 0.6899256671539539 Y Y 3.4780843434859 3.25360004855864 3.25360004855864 0 0.0 0.0 Y 0.00293255131964809 N Y 667 1312 ENSG00000094804 ENSG00000131759 + - 17 17 38459171 38513094 coding utr5p CDC6 RARA 38443885 38465444 + + 0.0 38451708 38487109 + - N - - N SA505 1 0.0 1.0 1 0 1 N Y 0.0 0.0 10 1.6578863657763503 1.6873163012635 1.6873163012635 1.6578863657763503 4 - - 0.985617129992104 hTERT 5.0 575862 AACTGAAGGAAAAGCTGTTGTTTGCCATAGAAGAAACAGAAGGATTTGGACAAGAGTAACTTCTGAGAACTTGCACCATGAATGGGCAAGAACTTATTTGCAATGTTTGTCCTTCTCTGCCTGTTGCACATCTTGTAAAATTGGACAATGGCTCTTTAGAGAGTTATCTGAGT|ACACTCCTGGAAGGAGAACCAAATCCTTCCTCACTGAAGAGCAGCTACTGTGGAATGAAACTTTGGAGTTAGATCATCGTTGAATCCAGCAAGCTACAGTGCCTGGGAGAAACAGCATTTATAAAGTATCGAGGTTACCGATACTTCCCTGAAGC 28 0.5561303558422951 0.5746918028778161 0.232382932397287 Y Y 3.56488607910057 3.38759559906577 3.38759559906577 0 0.0 0.0 Y 0.0 N N 1149 5873 ENSG00000078747 ENSG00000125971 + - 20 20 33099198 33128762 utr3p upstream ITCH DYNLRB1 32951041 33104214 + + 0.0 33095713 33102984 + - N - - N SA505 1 0.0 1.0 1 0 2 N Y 0.0 0.0 17 1.5794065378106 1.4420668388705502 1.5794065378106 1.4420668388705502 4 - - 0.962610435476322 hTERT 5.0 1508 GAAAAGGTATCCCTGCCATTGGTAAGCCAGCAGCTATGCGAGCCTTTGTCACATTCAAGATGCGTCGAAAAAGACTGTTTGCTATGAGGCCACAAAGAGCAGCATTTAATCCAACATAAACCGATCCATTTTCAAGTAGATT|CCTTGGGCGCTTCCTCAGTTCCCACCGGCACCACACCTGAATCCCTTGGCTTAGTCCCAGCCTCATACCCGAACACCACCATTTTGGTGGCTCATGTGACTTGCCGGTGGGCGGGGACCCAGAACGCCCTGGGCG 9 0.7611180527941 0.683885700448495 0.96188919115935 Y Y 3.25360004855864 3.38912318237562 3.25360004855864 0 0.0 0.0 Y 0.0035971223021584705 N Y 914 1308 ENSG00000171202 ENSG00000171204 - + 11 11 85367591 85347580 coding intron TMEM126A TMEM126B 85359011 85339629 + + 0.0 85365107 85339732 - + N - 1.30668828672715 N SA505 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 6 1.4126369033834 0.637648602221672 1.4126369033834 0.637648602221672 4 - 27.1666666666667 0.966813473441086 hTERT 5.0 1904 CGACATTTGGAACAACAGCTGGTTTCTCTGGAATATTCTCAAACTTCCTGTTCAGACGCTGCTTCAAGATAATATAAGCAAGGAAAACTGTGTTTTCAGAAGCTCACTGATTGGCATAGTTTGTGGTGTTTTCTATCCCAGTTCTTTGGCTTTTACTAAAAATGGACGCCTGGCAACCAA|GAATCTACTTGAAAATGGATCGGTTTATGTTGGATTAAATGCTGCTCTTTGTGGCCTCATAGCAAACAGTCTTTTTCGACGCATCTTGAATGTGACAAAGGCTCGCATAGCTGCTGGCTTACCAATGGCAGGGATACCTTTTCTTACAACAGACTTAACTTACAGATGTTTTGTAAGTTTTCCTTTGAA 18 1.0 0.995844364664547 0.66520049750461 Y Y 3.48639814491089 3.2629469197535097 3.2629469197535097 0 0.0 0.00270270270270268 Y 0.00270270270270268 N Y 1308 914 ENSG00000171204 ENSG00000171202 + - 11 11 85347580 85367591 coding coding TMEM126B TMEM126A 85339629 85359011 + + 0.0 85346822 85365107 + - N - - N SA505 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 7 1.37339698940052 1.5499766023234498 1.5499766023234498 1.37339698940052 4 - - 0.99031219296687 hTERT 5.0 357522 CAGTGTTGTGCTGAAGCAGGATTCCATCTACTATGAACATTTTTACAATGAGCTGCAGCCCTGGAAACACTACATTCCAGTTAAGAGCAACCTGAGCGATCTGCTAGAAAAACTTAAATGGGCGAAAGATCACGATGAAGAGG|TTAAATTAAAAATACCTTTTGGAAATAAATTACTAGATGCTGTTTGTTTGGTACCTAACAAGAGCTTAACATATGGAATAATTCTTACACATGGAGCATCAGGAGATATGAATCTTCCTCATTTGATGTCACTGGCATCCCATCTTGCATCTCAT 39 1.0 0.729608220308024 0.773361338696266 Y Y 3.2776762169330604 2.9763994049953 2.9763994049953 1 0.0 0.00334448160535117 Y 0.010314100615104 N Y 485 558 ENSG00000134901 ENSG00000151287 + - 13 13 103451357 103426161 coding coding KDELC1 TEX30 103436631 103418340 - - 0.0 103441362 103421891 - + N - - N SA505 2 0.0 1.26666666666667 1 4 1 Y Y 0.0 0.0 15 1.4420668388705502 1.5695965593148795 1.5695965593148795 1.4420668388705502 4 - - 0.95646539355197 hTERT 5.0 71232 AGGAATGCCCGATCAAGGAGGTGGTGCTTTATGTCAAAGAAGAAATGAAGAGGAATGATCTTCCAGAAACAGCAGTGATTGGTCTTCTGTGGACATGTATAATGAACGCTGTTGAGTGGAACAAGAAGGAAGAACTTGTTGCAGAGCAGGCTCTGAAGCACCTGAAG|TTGGTTAGTCTGCTGCTAATTGGAATTGCTGCGTGGGGCATTGGCTTCGGGCTGATTTCCAGTCTCCGAGTGGTCGGCGTGGTCATTGCAGTGGGCATCTTCTTGTTCCTGATTGCTTTAGTGGGTCTGATTGGAGCTG 24 1.0 0.9617187807081607 0.7745095603397221 Y Y 3.4937534244795 3.4571608175836404 3.4571608175836404 0 0.0 0.0 Y 0.0 N Y 4568 3146 ENSG00000136261 ENSG00000106537 + - 7 7 16746148 16824161 coding coding BZW2 TSPAN13 16685756 16793160 + + 0.0 16736686 16815836 + - N - - N SA505 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 10 1.13795750550329 1.29491716143478 1.29491716143478 1.13795750550329 4 - - 0.988654946317008 hTERT 5.0 239611 CAGTGACAGTAACTCAGGAACAAGTTGATATGGGTTTAGAGTGTCCAGTATGCAAAGAAGATTACACAGTTGAAGAGGAAGTCCGGCAGTTACCTTGCAATCACTTCTTTCACAGCAGTTGTATTGTGCCGTGGCTAGAACT|GAAATGACCTCCACCTTCAACCCCCGAGAATGTAAACTGTCCAAGCAAGAAGGGCAAAACTATGGCTTCTTCCTGCGAATTGAGAAGGACACCGAGGGCCACCTGGTCCGGGTGGTTGAGAAGTGTAGCCCAGCAGAGAAGGCTGGCCTTCAAGATGGAGACAGAGTTCTTAGGATCAATGGTGTCTTTGTGGACAAA 7 1.0 0.692436367332287 0.7617323747758159 N Y 3.73912139251568 3.38127338926705 3.38127338926705 0 0.0 0.0 Y 0.0 N Y 426 235 ENSG00000121848 ENSG00000174827 + - 1 1 145690661 145764074 coding utr5p RNF115 PDZK1 145611036 145726918 + + 0.0 145687091 145747042 + - N - - N SA505 1 0.0 1.0 1 0 1 N N 0.0 0.0 5 1.03985772054611 1.38320696789624 1.38320696789624 1.03985772054611 4 - - 0.988654946317008 hTERT 5.0 107087 GGCGGGGGCAGGCTGAAAGTTGGAGCAAGCAGGAAGTGAACTGAGGGCCACCCTGGGAGGAAGCCGACTAGGCGAATTCACTTACTGACCGGCCTGGGCTGCTCTGAGACAT|GAGCTCAACCTTCAACAAGACTACACAGAACCTGGCCCAGAAGAAGTGCTGGGAGAACATCCGTTACCGGATCTGCGTGGGGCTGGTGGTGGTTGGTGTCCTGCTCATCATCCTGATTGTGCTGCTGGTCGTCTTTCTCCCTCAGAGCAGTGACAGCAGTAGTGCCCCACGGACCCAGGATGCAGG 8 1.0 0.3630841852223 0.577142896647053 Y Y 3.65591337975064 3.39271690522525 3.39271690522525 2 0.991101290014333 0.0 Y 0.0 N Y 8029 280 ENSG00000118640 ENSG00000168899 + - 2 2 85809154 85820535 coding intron VAMP8 VAMP5 85788685 85811531 + + 0.0 85804772 85820071 + - N 0.40716529512201 0.179191585832238 N SA505 1 0.0 1.0 1 0 2 N Y 0.0 0.0 8 0.79460825815316 1.5499766023234498 1.5499766023234498 0.79460825815316 4 299.625 8.75 0.990818583430376 hTERT CGHSA0565 5.0 239827 CGGGGCTCATCTGCCGCCGCCGCCGCGCTGAGGAGAGTTCGCCGCCGTCGCCGCCCGTGAGGATCTGAGAGCCATGTCGGCCAGCAGCCTCTTGGAGCAGAGACCAAAAGGTCAAGGAAACAAAG|GTACACTAAGATGAAGACGGCCACCAACATCTACATCTTCAACCTGGCCTTAGCCGATGCGCTGGCCACCAGCACGCTGCCTTTCCAGAGTGCCAAGTACCTGATGGAGACGTGGCCCTTCGGCGAGCTGCTCTGCAAGGCTGTGCTCTCCATCGACTACTACAATATGTTCACCAGCATCTTCACGCTC 9 0.0557184895981657 0.7555259994258359 0.7378496147583058 Y Y 3.28867865251378 3.75594733445854 3.28867865251378 0 0.0 0.0 Y 0.0 N Y 6950 228 ENSG00000198492 ENSG00000116329 + - 1 1 29096287 29190208 coding coding YTHDF2 OPRD1 29063133 29138654 + + 0.0 29064194 29185466 + - N - 0.039001016597159 N SA505 1 0.0 1.0 1 0 1 N Y 0.0 0.0 10 1.92275578516073 1.70693625825494 1.92275578516073 1.70693625825494 4 - 0.1 0.927883632549437 hTERT 5.0 678256 CGCCGCCGCCGCCGCCGTTGCGCAGATCCGGGCCGCGGCTGTGGGGAGGGCGACGGAGCGGGTGACCTTCCGGAGGCGGGAGCGAGCGAGGAGGCCCGGGAGCGCCGAGCGTCGCCGCCGCCGCCGCCATGAACAACTCGGGCGCCGACGAGATCGG|TGGGACCTGAACCGCCAAACCGCACCTACGAGCAAACGGTAGGCGCTCCATAAATACTTGTTGATGTGGGTGCCATCGTGTAGATGACGGAGCACGAACCCGAGGCTCAGACAGGGGCGGCGACTTGTCCAAAGTCCCACTCCGTGGAGGAAGCGGCTCTGCAGACCTCAGGCGGCGGCTGCTCT 26 1.0 0.70769212018455 0.8837856373912808 Y Y 3.35566963758278 3.3368080613236804 3.3368080613236804 0 0.9936491430057008 0.0 Y 0.0 N N 4039 62512 ENSG00000071626 ENSG00000115268 + - 19 19 1435719 1441066 coding upstream DAZAP1 RPS15 1407584 1438358 + + 0.0 1407801 1438072 + - N - - N SA505 1 0.519125683060109 1.0 1 0 1 N Y 0.096045197740113 0.519125683060109 10 1.7363661937420902 1.7461761722378102 1.7461761722378102 1.7363661937420902 4 - - 0.965252806481787 hTERT 5.0 560356 AGAAGAAAAAAGGAGACAGAAGATTGAAATGTGGGACAGCATGCAAGAAGGAAAAAGTTACAAAGGAAATGCAAAGAAGCCCCAGGAGGAAGACAGTCCTGGGCCTTCCACTTCATCTGTCCTGAAACGGAAATCGGACAGAAAGCCTTTGCGGGGAGG|AGAACATGGTCCAAGACAATTCCTGGGAAAGTTCAGTTCTTCTCAAGTGAGGGTTCTGACACATCTGTACCAATTCCAGTAGTGCCACTACGGGGTGTGGACGACTCCTACCCGCCCCAGAAGAAGTCCTTCATGATGCTCAAGTACATGCACGACCACTACTTG 20 0.81273283754641 0.747623608338682 0.640044449628497 Y Y 3.33896748681929 3.5203902459336605 3.33896748681929 0 0.0 0.0 Y 0.0 N Y 2639 3908 ENSG00000131871 ENSG00000131873 + - 15 15 101817705 101792137 coding coding VIMP CHSY1 101811022 101715928 - - 0.0 101814625 101775782 - + N - - N SA505 1 0.0 1.0 1 0 1 N Y 0.0 0.0 11 1.69712627975922 1.3243470969219298 1.69712627975922 1.3243470969219298 4 - - 0.986516232660036 hTERT 5.0 491651 GGTGACATCCCAGGAATGGGTCTTCCAGATGCTATCGCGACAGAACAATTACACCGTCAACAACAAGAGAAATGGAGTGGCCAAAGTCAACATCTTCTTCAAGGAGCTGAACTACAAAACCAATTCTGAGTCTCCCTCTGTCAC|GGTGCTCCTGGAGCTGTTGGTGGGAATATACCCCTCAGGGGTTATTGGACTGGTCCCTCACCTAGGGGACAGGGAGAAGAGAGATAGTGTGTGTCCCCAAGGAAAATATATCCACCCTCAAAATAATTCGATTTGCTGTACCAAGTGCCACAAAGGAACCTACTTGTACAATGACTGTCCAGGCCCGGGGCAGGATACGGACTGCAGGGAGTGTGA 30 0.9635267508309308 0.912106174824478 0.17583358341505598 N Y 3.45976132345673 3.52680574168821 3.45976132345673 0 0.993074792243767 0.0027700831024931602 Y 0.0027700831024931602 N Y 19554 10870 ENSG00000111319 ENSG00000067182 + - 12 12 6486896 6451280 coding coding SCNN1A TNFRSF1A 6456009 6437923 - - 0.0 6457893 6443410 - + N - - N SA505 1 0.0 1.0 1 0 1 Y N 0.0 0.0 28 1.4714967743577 2.00123561312648 2.00123561312648 1.4714967743577 4 - - 0.969577309370243 hTERT CGHSA0430 5.0 239830 TGAGAAGCAAGATGCTAAAATCAGCATGATGGACACGTTGCTAAGCCAGTCAGTGGCCCTGCCTCCGTGCACTGAACCCAACTTCCAGGGACTGACTCACTGAGAGTGGGCTTTGACAAACAGCTCTCACAGGACCTGGCTGTCAACCTCCTTGTTGCCCCCACTGTTGCCTTGAGAATTGAAGACAT|GCCTTCCTGATGCGCTTGCCTGCTCCCTGGTCTCTCTGCATGGGGAAGGAGTGTTCCCAGCTTGCAAACTCCAGCTTTGCCTGTGAGAGGAACAAGCGTCCCTGATCCAGAAGGTGGTGA 24 1.0 0.733882799062461 0.661973701983946 Y Y 3.4278353619737403 3.06889150822292 3.06889150822292 0 0.0 0.0 Y 0.0 N Y 354 1572 ENSG00000164008 ENSG00000164010 + - 1 1 43264127 43310660 utr5p utr5p C1orf50 ERMAP 43232940 43282795 + + 0.0 43241150 43291294 + - N - 0.039978131178445 N SA505 1 0.0 1.0 1 0 1 N Y 0.0 0.0 5 1.7363661937420902 0.9417579355889308 1.7363661937420902 0.9417579355889308 4 - 1.4 0.98340261142279 hTERT 5.0 384189 GGGGCGGCGGCCGTGGGTCCCTGCCGGCCGGCGGCGGGCGCAGACAGCGGCGGGCGCAGGACGTGCACTATGGCTCGGGGCTCGCTGCGCCGGTTGCTGCGGCTCCTCGTGCTGGGGCTCTGGCTGGCGTTGCTGCGCTCCGTGGCCGGGGAGCAAGCGCCAG|ACAGAGGTGTTCCAGGCCTTGCAGCGGCTCCATATGACCATCTTCTCCCAGAGCGTCTCACCATGTGGGAAGTTTCTGGCGGCTGGCAACAATTACGGGCAGATTGCCATCTTCAGGTACCCTCTGCCGCTGTCCACCCATTAGCCCTGGCACTTGGC 35 0.795147832664917 0.7500649300491742 0.7954275030572819 Y Y 3.35823029066252 3.76951977068882 3.35823029066252 0 0.0 0.0 Y 0.0 N Y 4786 1427 ENSG00000006327 ENSG00000131652 + - 16 16 3072384 3077756 coding coding TNFRSF12A THOC6 3068446 3074028 + + 0.0 3070492 3075709 + - N - 0.596911361817979 N SA505 1 0.179245283018868 1.0 1 0 1 Y Y 0.179245283018868 0.0 33 1.03985772054611 1.6088364732977598 1.6088364732977598 1.03985772054611 4 - 2.72727272727273 0.988654946317008 hTERT 5.0 141476 TTTAAAAGTTTACAGGAGAGCCGACCATTTTCAGTTGACTTTTTCAGGAAAATGATTCAGTTTGAAAAGGAGCAAGAATCCTGCAATATGGCGAACATAAGAGAATATTATGAGAGAGCTTTGAGAGAGTTTGGATCCGCAGATTCT|GCCCGTGGAACACAGAGCATTCCTAATGACAGTCCTGCCCGGGGTGAGGGCACCCATTCTGAAGAGGAAGGCTTTGCCATGGATGAGGAGGACTCTGATGGAGAACTGAATACCTGGGAGCTGTCAGAAGGGACAAACTGTCCACCCAAGGAACAGCCTGGCGATCTTTTTAATG 14 0.68709213975248 0.7889180667318821 0.7035366447606001 Y Y 3.29227237536341 3.73808832274579 3.29227237536341 0 0.0 0.00309597523219796 Y 0.00309597523219796 N Y 349 1633 ENSG00000108651 ENSG00000172301 + - 17 17 30228784 30186356 coding coding UTP6 C17orf79 30187923 30178883 - - 0.0 30192385 30180049 - + N - - N SA505 2 0.0 1.3 1 3 1 Y Y 0.0 0.0 10 1.43225686037483 1.4714967743577 1.4714967743577 1.43225686037483 4 - - 0.936452379057004 hTERT 5.0 357536 CAGCAATGAAACAGATTCTCGTTAAGATGCATAGTAAACATTCTGAGAACAGCTTACTTCTCACTAAAACAGAACCAAAACATGTGACAGAAAATCAGAAATCAAAGACTTTGAATGTGCCTAAAGAGCATGAAGACAATATATTTACACCTAAACCAACACTCTTTAC|AAGATGTGAAATGGAGAAGTATCTGACACCTCAGCTTCCTCCAGTTCCTATAATTCCAGAGCATAAAAAGTATAGACGAGACAGTGCCTCAGTCGTAGACCAGTTCTTCACTGACACTGAAGGGTTACCTTACAGTATCAACATGAACGTCTTCCTCCCTGACATC 9 1.0 0.957977529826022 0.3367963710820381 N Y 3.18611454994968 3.6659225983548303 3.18611454994968 0 0.0 0.0 Y 0.0 N Y 171 15559 ENSG00000083535 ENSG00000102554 + - 13 13 73590591 73651676 coding coding PIBF1 KLF5 73356197 73629114 + + 0.0 73573133 73635999 + - N - - N SA505 1 0.0 1.0 1 0 1 Y N 0.0 0.0 7 1.59902649480204 1.66769634427206 1.66769634427206 1.59902649480204 4 - - 0.95528707919859 hTERT 5.0 427203 ACCAGACTCAAGCCCTCACTCGACTCTCGCGGCCTTCGTTGCTCGCACAGCTCCCTGCCCAGGCTAGGAGGCCGGCTTGCGGGGTTGAGTGGCCCGAGCTAAGGGTGCGGAGACCTAAGGGCGGCGACTACGACGGCGTTGATATCGGTGGTAACGACGGCCTCAGCAGGCGGGGAAGATGAAAGG|GTTCCTATTACTGTAACCATGCCAGAAATGACAGAGAATGAGACGCCTACAAAAAAGCAGCACAGAAAGAAAAACCGGGAGACACACAATGCAGTGGAGAGGCATAGAAAGAAGAAAATTAATGCTGGGATAAACAGAATAGGAGAGCTGATCCCATGTTCTCCTGCCCTGAA 12 0.8463621037731941 0.7139776542907991 0.795743102930087 Y Y 3.5293265419746 3.6491271616355 3.5293265419746 1 0.0 0.0 Y 0.0 N Y 9622 5638 ENSG00000121579 ENSG00000176542 + - 3 3 113465147 113415493 coding utr5p NAA50 KIAA2018 113437841 113367232 - - 0.0 113464789 113393743 - + N - - N SA505 1 0.0 1.0 1 0 1 N Y 0.0 0.0 5 1.46168679586199 1.5009267098448602 1.5009267098448602 1.46168679586199 4 - - 0.990106467923898 hTERT 5.0 70934 AAGGAGATCAAGGAAGAGCTTCTGCATTCTGAGAAGCTTAAGACATACTTTGAAGACAACCCTAGGGACCTCCAGCTGCTGCGGCATGACCTACCTTTGCACCCCGCAGTGGTGAAGCCCCACCTGGGCCATGTTCCTGACTACCTG|GGCCCAGAGTGAGCCTTACACAACCATCCACCAGCCTGGCTACTGCGCCTTCTATGACGAATGTGGGAAGAACCCAGAGCTGTCTGGAAGCCTCATGACACTCTCCAACGTGTCCTGCCTGTCCAACACGCCGGCCCGCAAGATCACAG 7 1.0 0.574899371989558 0.475945651946885 Y Y 3.51360402781852 3.5339931873874804 3.51360402781852 0 0.0 0.0 Y 0.0 N Y 2210 909 ENSG00000136271 ENSG00000015520 + - 7 7 44614650 44580914 coding coding DDX56 NPC1L1 44605016 44552134 - - 0.0 44607717 44579941 - + N - - N SA505 1 0.0 1.0 1 0 1 N Y 0.0 0.0 5 1.4714967743577 1.3243470969219298 1.4714967743577 1.3243470969219298 4 - - 0.984469948373908 hTERT 5.0 239409 CAGAATGGGAAAGACAACCCTACTACTGCAAGGCATGCTTTGATGTCCCTTCATCATTGCTGGGTCCTCAATGCAGGGGGCCATTTCATAGATGAAAATGGCTCTCGCCTTCCAGCAATTCCCCGCAGTGCTACAAATGGGAAGTCAGAGACCATCACAGCTGATGTCAATCACAACTTGAAGGATGCCAATGATGTACCAATCCAATGTGAAATCTCTCCTCTTATCTCCTATGCTGGAGAA|CCTCCATCAAGGGAGACCTGCAAGTTGCCTGGGGTTCAGTGCTCTAGAAAGTTCCAAGGTTTGTGGCTTGAATTATTCTAAAGAAGCTGAAATAATTGAAGAGAAGCAGAGGCCAGCTGTTTTTGAGGATCCTGCTCCACAGAGAATGCTCTGCACCCGT 13 0.00974346421954882 0.9638506967091892 0.6204975675633809 Y Y 3.42100929106525 3.58424216889964 3.42100929106525 0 0.0 0.0 Y 0.0 N Y 3281 631 ENSG00000117143 ENSG00000162733 + - 1 1 162569627 162750237 coding utr5p UAP1 DDR2 162531321 162601163 + + 0.0 162567648 162625001 + - N - - N SA505 1 0.0 1.0 1 0 1 N Y 0.0 0.0 7 1.5794065378106 1.43225686037483 1.5794065378106 1.43225686037483 4 - - 0.927883632549437 hTERT 5.0 141884 GTTGAGAGTGAAGCTGCATCTTATCTGGACCAGATTTCTAGATATTATATTACAAGAGCCAAATTGGTTTCTAAAATAGCTAAATATCCCCATGTGGAGGACTATCGCCGCACCGTGACAGAGATTGATGAGAAAGAATATATCAGCCTTCGGCTCATCATATCAGAGCTGAGGAATCAATATG|GCTGAAAAACTGGGTGGTAGCTGAAGACGTGGTGTTTAAACCTGTGGCTGCCCCCTGGAACCCGGAGCACTGGCTACAGCGCCCACAGCTGACTCGGCAGGTCCTGGGAAAGGAGGACCTGACAGCTTTTTCCTTGGGAAGCCCCCTACC 14 1.0 0.34707912455417106 0.752259630320052 Y Y 3.60888739872753 3.1363999347708305 3.1363999347708305 0 0.0 0.0 Y 0.0 N Y 13932 1825 ENSG00000131467 ENSG00000131480 + - 17 17 40995523 41002724 coding coding PSME3 AOC2 40976402 40996617 + + 0.0 40991397 41001103 + - N - - N SA505 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 8 1.71674623675065 1.5107366883405802 1.71674623675065 1.5107366883405802 4 - - 0.979051496874115 hTERT 5.0 141883 ATCTGGACCAGATTTCTAGATATTATATTACAAGAGCCAAATTGGTTTCTAAAATAGCTAAATATCCCCATGTGGAGGACTATCGCCGCACCGTGACAGAGATTGATGAGAAAGAATATATCAGCCTTCGGCTCATCATATCAGAGCTGAGGAATCAATAT|GATCTGGTGGCTTGGGTCACAGCCAGCTTCCTGCACATTCCCCATGCCGAGGACATCCCAAACACAGTGACTCTGGGGAACAGAGTTGGCTTCTTGCTCCGACCCTATAACTTCTTTGATGAGGACCCCTCCATCTTCTCCCCTGGC 16 1.0 0.76757988161478 0.652288943202049 Y Y 3.5676145660496603 3.5314325343077404 3.5314325343077404 0 0.0 0.0 Y 0.0 N Y 13932 1825 ENSG00000131467 ENSG00000131480 + - 17 17 40995523 41002724 coding coding PSME3 AOC2 40976402 40996617 + + 0.0 40991397 41002099 + - N - - N SA505 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 9 1.58921651630632 1.40282692488768 1.58921651630632 1.40282692488768 4 - - 0.99031219296687 hTERT 5.0 591930 CATGTCAGCAGGGCCTATGGTGGTTCCATGTGTGCTAAATGTGTTCGTGACAGGATCAAGCGTGCTTTCCTTATCGAGGAGCAGAAAATCGTTGTGAAAGTGTTGAAGGCACAAGCACAGAGTCAGAAAGCTAAATAAAAAAATGAAACTTTTTTGAGTAATAAAAATGAAAAGACGCT|GAATAATTTATGATGTTATTGTTGAACCTCCAAGTGTCGGTTCTATGACTGATGAACATGGGCATCAGAGGCCAGTAGCTTTCTTGGCCTACAGAGTAAATGGACAATATATTATGGAAGGACTTGCATCCAGCTTCCTATTTACAATGGGAGGTTTAGGTTTCATAATCCTGGACCGATCGAATGCAC 50 0.7499080137676128 0.882588010927222 0.5488442965256111 Y Y 2.94533867941286 3.59272380419397 2.94533867941286 0 0.0 0.0 Y 0.0 N Y 27190 7666 ENSG00000109475 ENSG00000198856 + - 4 4 109551568 109588976 utr3p coding RPL34 OSTC 109541722 109571740 + + 0.0 109546409 109576720 + - N - - N SA505 50 0.0 14.952380952381 2 21 4 N Y 0.0 0.0 21 1.80503604321212 1.66769634427206 1.80503604321212 1.66769634427206 4 - - 0.9217237502671072 hTERT 5.0 408968 TGGACCTGGCCGGGAGTGAGCGACTTGACCCCGGCTTAGCCCTCGGCCCCGGGGAGCGGGAACGCCTTCGGGAAACACAGGCCATTAACAGCAGCCTGTCCACGCTGGGGCTGGTTATCATGGCCCTGAGCAACAAGGAGTCCCACGTGCCTTACCGGAACAGCAAACTGACCTACCTGCTGCAGAACTCTCTGGGTGGTAGTGCTAAGAT|GCCCCCCCAGGATGCAATGGCGCAGCCCCCCCGGCTGAGCCGCTCTGGTGCCTCCTCACTTTGGGACCCAGCTTCTCCTGCTCCCACCTCTGGCCCCAGGCCTCGGCTTTGGGAGGGTCAAGATGTGCTGGCCAGATGGACTGATGGGCTGC 3 0.586098123172694 0.97296180488478 0.988722548764992 Y Y 3.5529387020326 2.9291657373094906 2.9291657373094906 0 0.0 0.0 Y 0.0 N Y 10730 724 ENSG00000237649 ENSG00000112511 + - 6 6 33377701 33384230 coding utr5p KIFC1 PHF1 33359313 33378176 + + 0.0 33374442 33380025 + - N - - N SA505 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 7 1.7363661937420902 1.29491716143478 1.7363661937420902 1.29491716143478 4 - - 0.9158345520079948 hTERT 5.0 450942 GGACCAAACAATGCATCTCCAGGTGCGTGTGCCATGGAGACTTGGGGGCCTGAAGGCAGCCCTGGGCAGCCTCCTCCAGCCTCCCCTCCACCTCAGAATCTGCCTCTTCCAGGGACAGTGAGCTTCTTCTCTCCTTGTTAATCCAAACAGCATTGACCATCGATTCTGCAGGAGCAGGTGTGTTTCCT|CCTTGCTCTCGATCTGCTTCACCATCTTGGCTGCTGGAGTCTGACGAGCGGCTGTAAGGACCGATGGAAATGGATCCAAAGCACCAAACAGAGCTTCAAGACTCGCTGCTTGCTCTCTCCCTTTATAAACTGGCACGCCCGGCGTGCGTG 44 1.0 0.876270375186356 0.697785737804616 Y Y 3.6491271616355 3.4911927713997595 3.4911927713997595 0 0.0 0.00294985250737456 Y 0.00294985250737456 N Y 2705 29076 ENSG00000188959 ENSG00000136810 - + 9 9 112970469 113018920 coding intron C9orf152 TXN 112952328 113006091 - - 0.0 112963754 113018692 + - N - 0.867329402416078 N SA505 1 0.0 1.0 1 0 3 N Y 0.0 0.0 29 1.9031358281693 1.4813067528534198 1.9031358281693 1.4813067528534198 4 - 436 0.99031219296687 hTERT 5.0 107345 TATGTCTGTGGCAAAGACTATTCTAAAGCGTCTGTTCAGGGTTTATGCCCATATTTATCACCAGCACTTTGATTCTGTGATGCAGCTGCAAGAGGAGGCCCACCTCAACACCTCCTTTAAGCACTTTATTTTCTTTGTTCAGG|CACTAAAAGAAGAAATCAAAGAGATGCATGGATTGCGGATATTTACCTCTGTCCCCAAACGCTGACCACGCCCTGGCTGCATAGATGCTGCTGCTTAAGACCTTGGATGAACTTCACTGACATCATTCTTCCCTAAG 17 1.0 0.4605504961938979 0.484318066728424 N Y 3.31063524818594 3.33424740824393 3.31063524818594 2 0.0 0.0 Y 0.0 N Y 6462 1602 ENSG00000114978 ENSG00000163170 + - 2 2 74406025 74375121 intron coding MOB1A BOLA3 74382165 74362525 - - 0.0 74386218 74362785 - + N - 9.39630344492003 N SA505 3 0.0 2.2 1 4 1 Y N 0.0 0.0 5 1.29491716143478 1.21643733346904 1.29491716143478 1.21643733346904 4 - 134.2 0.9407770089039392 hTERT 5.0 384443 CGGGGCGGCTCGGGCTAGGGCACCGCCCCAGCGCCTCCGCGCACACCCGGAAGCGGCGGAGTAGAGCGGAGCCTGGCGGGCGTGGGAACCCAGGCCCCGCCGAGGCGGC|CAGGCTGCCGGTCCCGGCGGTGCGACACGGCCGGGAGGAGGAGAACAACGCAAGGGGCTCAACCGTCGGTCGCTGGAGCCCCCCCCGGGGCGTGGCCTCCCGCCCCCTCAGCTGGGGAGGGCGGGGCTCGCTGCCCCCTGCTGCCGACTGCGACCCTTACAGGGGAGGGAGGGCGCAGGCCGCGCGGAGATGAGGAGGA 51 1.0 0.46817131041573 0.783704117848552 Y Y 3.02188845513875 3.2442133245704103 3.02188845513875 0 0.0 0.0 Y 0.0 N Y 620 580 ENSG00000102871 ENSG00000237172 + - 16 16 67194201 67185117 utr5p intron TRADD B3GNT9 67188083 67182008 - - 0.0 67193741 67184574 - + N - 18.7424738360825 N SA505 1 0.0 1.0 1 0 1 N Y 0.0 0.0 22 0.8044182366488779 1.91294580666502 1.91294580666502 0.8044182366488779 4 - 0 0.98340261142279 hTERT 5.0 184881 GGAGGACCGGGCCCGGGAGAAGGTGCTGATGCAGGAGCTTGTGACCCTCATTGAGCAGCGCAACGCTATCATCAACTGCCTGGATGAGGACCGGCAGAGGGAGGAAGAGGAAGACAAGATGTTGGAAGCCATGATCAAGAAGAAAG|TTTTGATGGCGACGACTTTGATGATGTGGAGGAGGATGAAGGGCTAGATGACTTGGAGAATGCCGAAGAGGAAGGCCAGGAGAATGTCGAGATCCTCCCCTCTGGGGAGCGACCGCAGGCCAACCAGAAGCGAATCACCACACCATACATGACCAAGTACGAGC 17 1.0 0.727541274306588 0.837183346592595 Y Y 3.21588108593705 3.0929278238039903 3.0929278238039903 0 0.0 0.0 Y 0.0 N Y 7309 3669 ENSG00000100139 ENSG00000100142 + - 22 22 38338829 38437113 coding coding MICALL1 POLR2F 38301664 38348614 + + 0.0 38333799 38352780 + - N - - N SA505 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 7 1.3243470969219298 1.58921651630632 1.58921651630632 1.3243470969219298 4 - - 0.975362454852894 hTERT 5.0 57783 GACCGAGCCCGCCACCGACCTCGGCCGCTGGCGACTCAACTGCGAGAGGGGCCGGCAGACGTGGACCTACCTGCAGGACGAGCGCGCCGGCCGCGAGCAGACCGGCCTGGAAGCCTACGCCCTGGGGCTGGACACC|TTCCAGATTTCGGAAGGTTCACGAGTGTTGCCGACACGCCCTCCCAACTGCAGACATCCTCCCTGGAGGACCTGCTGTGCTCACATGCCCCCCTGTCCAGCGAGGACGACACCTCCCCGGGCTGTGCAGCCCCCTCCCAG 27 0.798368443720992 0.8817651194322079 0.636373606173006 Y Y 3.31336373513502 3.6491271616355 3.31336373513502 0 0.0 0.0 Y 0.0 N Y 12729 450 ENSG00000160285 ENSG00000160284 + - 21 21 47648738 47604390 coding coding LSS C21orf56 47608360 47581062 - - 0.0 47648348 47588572 - + N - - N SA505 1 0.0 1.0 1 0 1 N Y 0.0 0.0 12 1.17719741948616 1.2458672689561898 1.2458672689561898 1.17719741948616 4 - - 0.986516232660036 hTERT 5.0 237547 AACTGAGGCGATAGAATTGGCGCATGCGTACGAGACATGTCATGCTGCCCAAGGACATAGCCAAGCTGGTCCCTAAAACCCATCTGATGTCTGAATCTGAATGGAGGAATCTTGGCGTTCAGCAGAGTCAGGGATGGGTCCATTATATGATCCATGAACCAG|GGACACACTCAGGACACCAACACCTTCTTTCTGTGCCGGACACTGCGCTCCCTAGGGGTCCAGGTTTGCCGAGTCTCAGTTGTACCTGATGAGGTAGCCACCATTGCAGCTGAGGTCACT 22 0.808077656561825 0.889670660995162 0.7667244610559342 Y Y 3.38912318237562 3.4529352525482406 3.38912318237562 0 0.9916961130742048 0.0 Y 0.0 N Y 6893 2158 ENSG00000173207 ENSG00000160688 + - 1 1 154951725 154965587 coding coding CKS1B FLAD1 154947129 154955814 + + 0.0 154950590 154960581 + - N - - N SA505 7 0.0 4.2 1 3 1 N Y 0.0 0.0 5 1.10852757001614 0.9319479570932132 1.10852757001614 0.9319479570932132 4 - - 0.918487168131971 hTERT 5.0 450514 GGAAGATGCTGAAGAAGATGAGGAGAAGCGGGAGGAAGCCGGGGCAGAGGAGGAGGCAGCTGAGGAGAGCCGTCCAGGGGCCCAGGGCCCCAGCTCGCCTTCTAGCCAGCCCCCTGGACTCCATCCCCACGAGTGGACCTACGAGGAACAATTCAAGCAG|GTGGCTGACGGCCTGGTCAAGGTGCAGGTGGCTTTGGGGAACATTTCCAGCAAGAGGGAGAGGGTGAAGATTCTCTACAAAAAGATTGAAGATCTGATCAAGTACCTGGATCCTGAGTACATCGACCGCATTGCCATACCTGATGC 31 0.6922628316950831 0.6904764207614829 0.715956158330844 Y Y 3.70463477795295 3.31526204080546 3.31526204080546 1 0.0 0.0 Y 0.0 N Y 67 3818 ENSG00000205143 ENSG00000137100 + - 9 9 34628104 34620515 coding coding ARID3C DCTN3 34621376 34613548 - - 0.0 34627694 34618757 - + N - - N SA505 1 0.42156862745098 1.0 1 0 1 Y Y 0.42156862745098 0.0 10 1.00061780656324 1.28510718293906 1.28510718293906 1.00061780656324 4 - - 0.987193581620778 hTERT 5.0 238552 GGAGCCCTCCCTTTGAGACGGCTGACCTGAAGGAGACGTACCGCTGCATCAAGCAGGTTCACTACACGCTGCCTGCCAGCCTCTCACTGCCTGCCCGGCAGCTCCTGGCCGCCATCCTTCGGGCCTCACCCCGAGACCGCCCCTCTATTGACCAGATCCTGCGCCATGACTTCTTTACCAAGG|TGGCCGTAACCTTTGGCCTGGGGCAGCTGCAGGAGCGCTGCGTGGCTTTCATAGAGGCCCACAGCCAGGTACTGCTCCCTTCATACTCCTCACCCTACGCACCGCATTCTGCTC 8 0.448651838142062 0.8078221754224642 0.6514282420895021 Y Y 3.73233517440054 3.3635728638538303 3.3635728638538303 0 0.0 0.0 Y 0.0 N Y 2222 486 ENSG00000173846 ENSG00000222009 + - 1 1 45271662 45281257 coding coding PLK3 BTBD19 45265897 45274154 + + 0.0 45268825 45278668 + - N - 1.06843874573128 N SA505 1 0.0 1.0 1 0 3 Y Y 0.0 0.0 6 1.34396705391337 0.8534681291274681 1.34396705391337 0.8534681291274681 4 - 1 0.986216055770268 hTERT 5.0 238736 GAGCCTCTGGTGTGGGTCAGCAAGTGGGTTGACTACTCCAATAAGTTCGGCTTTGGGTATCAACTGTCCAGCCGCCGTGTGGCTGTGCTCTTCAACGATGGCACACATATGGCCCTGTCGGCCAACAGAAA|GTGGCCGTAACCTTTGGCCTGGGGCAGCTGCAGGAGCGCTGCGTGGCTTTCATAGAGGCCCACAGCCAGGTACTGCTCCCTTCATACTCCTCACCCTACGCACCGCATTCTGCTCCTCCCTGACCCATTTGCCGGCTCGCAGGAGGCCCTCCGGACCCGAGGCTTCCT 11 0.945090730626745 0.689608766573178 0.490123643945358 Y Y 3.59681204058356 3.4048456965317007 3.4048456965317007 1 0.0 0.0 Y 0.0 N Y 2222 486 ENSG00000173846 ENSG00000222009 + - 1 1 45271662 45281257 coding coding PLK3 BTBD19 45265897 45274154 + + 0.0 45270173 45278668 + - N - 1.06962232119957 N SA505 1 0.0 1.0 1 0 3 Y Y 0.0 0.0 5 1.12814752700757 1.2654872259476295 1.2654872259476295 1.12814752700757 4 - 1.2 0.99155349275301 hTERT 5.0 238708 TTTGGCAGAAAGAAGAAGAGTAAGAATCATGCCCAGGAGAGGGATGAGGTCTCCGGTTTGGTGAGCGGCCTCATGCGCACATCCGTTGGCCATCAGGATGCCAGGCCAGAGGCTCCAGCAGCTTCTGGCCCAGCCCCTGTCAGCCTGGTAGAGACAGCACCTGAAGACAGCTCACCCCGTGGGACACTGGCAAGCAGTGGAGATG|GTGGCCGTAACCTTTGGCCTGGGGCAGCTGCAGGAGCGCTGCGTGGCTTTCATAGAGGCCCACAGCCAGGTACTGCTCCCTTCATACTCCTCACCCTACGCACCGCATTCTGCTCCTCCCTGACCCATTTGCCGGCTCGCAGGAGGCCCTCCGGACCCGAGGCTTCCTGGAGCTGTCGGCGGCC 17 0.5509168751279029 0.824151697249138 0.262810390633339 Y Y 3.49847350305486 3.4048456965317007 3.4048456965317007 0 0.0 0.0 Y 0.0 N Y 2222 486 ENSG00000173846 ENSG00000222009 + - 1 1 45271662 45281257 coding coding PLK3 BTBD19 45265897 45274154 + + 0.0 45269696 45278668 + - N - 1.06962232119957 N SA505 1 0.0 1.0 1 0 3 N Y 0.0 0.0 5 1.31453711842622 1.5794065378106 1.5794065378106 1.31453711842622 4 - 1.2 0.962610435476322 hTERT 5.0 491704 GACTTCGGGTGTTTGACAAGGAAGGAAATGGCACCGTCATGGGTGCTGAAATCCGGCATGTTCTTGTCACACTGGGTGAGAAGATGACAGAGGAAGAAGTAGAGATGCTGGTGGCAGGGCATGAGGACAGCAATGGTTGTATCAACTATGAA|GGCCGAGTGACCAAGACAAAGGACGGGCATGAGGTTCGGACCTGCAAAGTGGCGGACAAAACAGGCAGCATCAATATCTCTGTCTGGGACGATGTTGGCAATCTGATCCAGCCTGGGGACATTATCCGGCTCACCAAAGGGTACGCTTCAGTTTTCAAAGG 37 1.0 0.55360001927237 0.7734557809946209 N Y 3.59528445727371 3.49168728493972 3.49168728493972 0 0.0 0.0 Y 0.0 N Y 57370 3038 ENSG00000092841 ENSG00000139579 + - 12 12 56557280 56623638 coding coding MYL6 NABP2 56551945 56615799 + + 0.0 56554104 56619157 + - N - - N SA505 2 0.0 1.3125 1 5 1 Y N 0.0 0.0 16 1.3047271399305 1.54016662382773 1.54016662382773 1.3047271399305 4 - - 0.954001899099325 hTERT 5.0 237811 AGTTCCACCGTGTCAGCTTCCCTGTTACTGGCAGGAGCCCCATTCCCCTGTGCCACCACAGATCCTTTGTGGGAAGACATCTGGCTGGTACCTCAATACCCTGCAGCTTCAGCTTGGGGAAAGGTTGGGGTCTCTCAGCCCCAGGGGGCAGAGATCTCCCTCTGATGGTAGACA|CGTCTGGATCCCCATGACGGAGCGCCTTTTCCTCCACCACCTGACAAGCCGACAGATCCCACAATGCGCCGCGGGGCGGGTCGGAGGGCGGGGCAGGCCGGGGGCGGGGCC 60 0.8295745097646708 0.98931815016482 0.823781249568646 Y Y 3.31063524818594 3.5455299893015098 3.31063524818594 0 0.0 0.0 Y 0.0 N Y 13811 3906 ENSG00000159346 ENSG00000159348 - + 1 1 202927700 202936408 utr5p coding ADIPOR1 CYB5R1 202909951 202930997 - - 0.0 202920292 202936319 + - N - 0.607331435080579 N SA505 1 0.0853658536585366 1.0 1 0 1 N Y 0.0 0.0853658536585366 14 1.6284564302891895 0.8044182366488779 1.6284564302891895 0.8044182366488779 4 - 36.4285714285714 0.982039964137682 hTERT 5.0 677995 TAGGTTTCCTGAGCCGGAGACATGGCCCGCCGTGCGGCGCTCGAGGCGGCCTGGAAGAGCAGAGACAGGGCTGCCGCTGCGGGTCGTGACTCCAGAGTTGGGGCGTCTCTTCTAAGCTCCA|CCAACTGTAGTCATGGTGACTACCGCCCACCAGAAGGACTCAGGGATGCTAGTGAAATGGGAGTCCACCCGGTCAACTTCGGCAAAGTAGACGGCGCTGGAAAAGAGGACCACACCGATGAAGAGGAAAAAGATGAGGAGGCCCAGCTC 20 0.8473624486723991 0.861013287840619 0.290336553719533 Y Y 3.64656650855576 3.67849247003875 3.64656650855576 1 0.0 0.0 Y 0.0 N N 215 400 ENSG00000196337 ENSG00000104848 - + 19 19 49562117 49576198 utr5p coding CGB7 KCNA7 49557531 49570675 - - 0.0 49559809 49573612 + - N - 0.0682604491734414 N SA505 1 0.0 1.0 1 0 1 N Y 0.0 0.0 12 1.0889076130247 1.52054666683629 1.52054666683629 1.0889076130247 4 - 0.25 0.963228950721784 hTERT 5.0 1342 CTTGGGATGGGAATCCTGAGCGGTACGATGCCTCCATCCTTCTCTGGAAACTGCAGTTCGACGACAATGGGACATACACCTGCCAGGTGAAGAACCCACCTGATGTTGATGGGGTGATAGGGGAGATCCGGCTCAGCGTCGTGCACACTG|GTGTTTATATCGTCTTTTCCTTGGAGATTCGTGCAGATGCCCATGTCCGAGGTTATGTTGGAGAAAAGATCAAGTTGAAATGCACTTTCAAGTCAACTTCAGATGTCACTGACAAACTTACTATAGACTGGACATATCGCCCTCCCAGCAGCAGCCACACAGTATCAGTAAGTGTGTAC 8 0.6188851276976539 0.357533184963302 0.35660157035733203 Y Y 3.5874651693886803 3.51782959285392 3.51782959285392 0 0.0 0.0 Y 0.0 N Y 9521 2064 ENSG00000149573 ENSG00000160588 + - 11 11 118135251 118123065 coding coding MPZL2 MPZL3 118124118 118097409 - - 0.0 118133153 118111092 - + N - 3.65679780694802 N SA505 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 6 1.04966769904183 1.28510718293906 1.28510718293906 1.04966769904183 4 - 5.66666666666667 0.9477914012394152 hTERT 5.0 239294 CTACGAGATGTTTTCTGGTGATTTCACACGATCCTTTGATAGTGGCAGTGTCCGCCTGCAGATCTCAACCCCAGACATCAAGGATAACATCGTTGCTCAGCTGAAGCAGCTGTACCGCATCCTTCAAACCCAGGAGAGCTGGCAGCCCATGCAGCCCACCCCCAGCATGCAACTGCCCCCTGCCCTGCCTCCCCA|GCCCCTCCTCAAGTGTCTGGCTGAAAGATGCCACCCAGGGAAGGGAACTCGGGCTAGCTAAGGAGGCCATTCTTGATGTTGCTTCTAGATCTCATGTCATCACCGAGCCCTCAGCTGCTGGTGGCAGCTGCTCAGCAGACCCTTGGCATGGGAAAGAGACGGAGTCCACCCCAAGCCATCTGCCTTCACTTA 150 1.0 0.8575652838557309 0.608087685933308 Y Y 2.6838376220666604 3.34256120966892 2.6838376220666604 2 0.994805090206186 0.0 Y 0.994805090206186 N N 12473 3704 ENSG00000117595 ENSG00000162757 + - 1 1 209979465 209957904 coding intron IRF6 C1orf74 209959036 209955661 - - 0.0 209961769 209957054 - + N - 23.5273968524327 N SA505 1 0.0 1.0 1 0 2 N Y 0.0 0.0 76 2.00123561312648 1.9031358281693 2.00123561312648 1.9031358281693 4 - 0.605263157894737 0.991863585010212 hTERT CGHSA0346 5.0 239293 CATTTATGCCATCAGGCTGTGCCAGTGCAAGGTGTACTGGTCTGGGCCATGTGCCCCATCACTTGTTGCTCCCAACCTGATTGAGAGACAAAAGAAGGTCAAGCTATTTTGTCTGGAAACATTCCTTAGC|GGCCCCTCCTCAAGTGTCTGGCTGAAAGATGCCACCCAGGGAAGGGAACTCGGGCTAGCTAAGGAGGCCATTCTTGATGTTGCTTCTAGATCTCATGTCATCACCGAGCCCTCAGCTGCTGGTGGCAGCTGCTCAGCAGACCCTTGGCATGGGAAAGAGACGGAGTCCACCCCAA 37 0.82834862324938 0.90780330280633 0.879085782312665 Y Y 3.60935140704395 3.40744620240479 3.40744620240479 0 0.9923328305681248 0.0 Y 0.0 N Y 12473 3704 ENSG00000117595 ENSG00000162757 + - 1 1 209979465 209957904 coding intron IRF6 C1orf74 209959036 209955661 - - 0.0 209963840 209957054 - + N - 23.7222079508128 N SA505 1 0.0 1.0 1 0 2 N Y 0.0 0.0 10 1.15757746249473 1.4518768173662702 1.4518768173662702 1.15757746249473 4 - 3.8 0.9702256058024472 hTERT CGHSA0346 5.0 107983 GGAGCTGGAGACCAGCCCGGCCAACACAGCGAAACCCCGTCTCCACCAAAAAAAACCGAAAACCAGTCAGGCGTGGCGGTGCGCGCCTGCAATCGCAGGCACTCGGCAGGCTGAGGCAGGAGAATCAGGCAGGGAGGTTGCAGTGAGCCGAGATGGCAGCAGTACCGTCCAGCCTTGG|AGGAGGGGAAGCACACAGATGGGCAGGTGCAGGAGCTGGGGTGAGTGCTGTGGGGCTCCGGCCCCATGGTAGCGTCTAGGGGTGGGTGCCTGTGACTCCCAAAGCCCAAGTAGGCATGTGTTACAGTGATCTTTTAGTTTTGCCATCTGCAGAG 17 0.6219210335483111 0.5664121192885629 0.4575055403152871 N Y 3.6282434885265897 2.98992264086242 2.98992264086242 3 0.941733941733942 0.0 Y 0.0 N N 3427 168 ENSG00000144401 ENSG00000162944 + - 2 2 208490652 198540769 utr3p intron METTL21A RFTN2 208445355 198435524 - - 0.0 208474573 198479411 - + N - 16.8390949088624 N SA505 10 1.0 6.875 3 8 1 N N 1.0 1.0 8 1.66769634427206 1.4911167313491398 1.66769634427206 1.4911167313491398 4 - 0 0.905855694448174 hTERT 5.0 639774 ATGGCGGCCCCAACGGCCGTCCAGGACGTGGAGCGAAATGAGCTCGGGCGCTGACGGCGGCGGTGGCGCTGCGGTGGCGGCGCGGTCGGACAAGGGCAGTCCCGGGGAGGACGGTTTCGTCCCGTCGGCGCTGGGGACCCGCGAG|CAGGAGTTGACCACATTTGGCCATTTCCCAGAAGGGCCCCACCCCAAGGGTGAGTGGCCAATGGGGAGCTGTTTCTGCTGACATCAATTCCCCAGGAGGTACTCACCCCAAGTCTGCCCAAGTGAAGATGGCTGATACCCACCCTGGGAT 6 0.732758022486882 0.7381072873372491 0.456484091837819 Y Y 3.1170039921784105 3.23640338425519 3.1170039921784105 1 0.993126747437092 0.0 Y 0.0 N Y 367 3197 ENSG00000203791 ENSG00000189319 + - 10 10 126480446 126432838 coding utr5p METTL10 FAM53B 126436721 126307861 - - 0.0 126480293 126395456 - + N - - N SA505 1 0.032051282051282014 1.0 1 0 1 N Y 0.0 0.032051282051282014 7 1.23605729046047 1.53035664533201 1.53035664533201 1.23605729046047 4 - - 0.97782465071169 hTERT 5.0 185053 GGTGTCGAACTCAGCAGCCATCTTGCAGGACAGAGCTGGGTGGCTGTGTTCCGCGGAGCAGTTGGTGACCACAAGGTGGGACCCCAGTCTCTCCTGGAGGCCTTTGTCTGGGCTGTCGGTGAAGACAAATGT|CTGCACTTGGACACGTAGGTCCAATAAGTGGTTCCTGAAGAAAGGAATCCCAACTCCCAAGCTCAAGTGGCACTTCTTCCAGTAAGGCTGCCTGGATTGCTCCCAGTGGGAGCAACCATCCTCTCTCCAGTAGAGCTGTCTCAGGAACCTGCGTGC 6 1.0 0.239216004893773 0.4028730920104311 Y Y 3.48743121468078 3.88721439801659 3.48743121468078 0 0.0 0.0 Y 0.0 N N 476 2446 ENSG00000100060 ENSG00000100065 - + 22 22 37882439 37915549 coding downstream MFNG CARD10 37865101 37886400 - - 0.0 37876807 37885888 + - N - - N SA505 1 0.0 1.0 1 0 1 N Y 0.0 0.0 5 1.54016662382773 1.05947767753755 1.54016662382773 1.05947767753755 4 - - 0.961625595496118 hTERT CGHSA0227 5.0 184928 AGCGGGCCCAGGGTGGCACCTGCCTCAAGGCCTGTGCCTCCTCCCATTCCCTGTGCTCCAACCTCAGCAGCACTTGGAGCCTGAGCGAGTTCCCCTCCCCTCTGGGAGGCCCAGAAGCAACTGGGGAGGCAGCTGTCATGGGGGGACCTGAGCCTCACAACTC|GGTGGTTCTGCCATGTGGACGATGACAACTATGTGAACCCAAGGGCGCTGCTGCAGCTTCTGAGAGCCTTCCCGCTGGCCCGCGACGTCTATGTGGGAAGGCCCAGCCTGAACCGGCCCATCCATGCCTCAGAGCCACAGCCCCACAACCGCACGAGGCTGGTACAGTTC 9 0.814436114352243 0.487320770736653 0.0159651054588409 Y Y 3.3880901126057297 3.58164166302655 3.3880901126057297 0 0.0 0.0 Y 0.00911061312956896 N Y 2446 476 ENSG00000100065 ENSG00000100060 + - 22 22 37915549 37882439 coding coding CARD10 MFNG 37886400 37865101 - - 0.0 37900642 37875536 - + N - - N SA505 1 0.0 1.0 1 0 1 N Y 0.0 0.0 5 1.31453711842622 1.42244688187911 1.42244688187911 1.31453711842622 4 - - 0.958001384358772 hTERT CGHSA0227 5.0 57792 GGCCTCGCGTCCGCCGCTGCGCCGTGAGCGCCGCTGGTCGGAGGGAAGAGCTCGCCGGGGCGCCGGGCCAGGACGGGGCGGCAGGCGCCTTCGCGGACCGAGCCTGACGGAGCCGGAGGCTGGGAGCCGCGGCGGCCTGGG|ACTCCTGCCCCTGCCACGAGAACACACCCTTTCCAGTTTGCTGGAGAAATATAAGAGAAGTCCAGTGAAAGAGAGCTGAGTTTCCCCAATGATGCCATCAAGATGAACTAACTACAGTTAACCAGCCAGCTGATAGCAGATGCATGAGTGAGCCCAGCTGAGAG 11 0.610815690881429 0.465272874754797 0.35516936013273 N Y 2.9328874412351205 3.25935319690388 2.9328874412351205 0 0.9929309785379872 0.0 Y 0.0 N Y 5574 108 ENSG00000180530 ENSG00000235609 + - 21 21 16437321 16254296 utr5p intron NRIP1 AF127936.7 16333556 16195290 - - 0.0 16437066 16230029 - + N - - N SA505 1 1.0 1.0 1 0 1 N N 0.0 1.0 6 1.02023776355467 1.20662735497332 1.20662735497332 1.02023776355467 4 - - 0.952653457146918 hTERT 5.0 418086 GTATGCCAAGGGAGACAGCCGATACATCCTGGGTGACAACTTCACAGTGTGCATGGAAACCATCACAGCTTGCCTGTGGGGACCACTCAGCCTGTGGGTGGTGATCGCCTTTCTCCGCCAGCATCCCCTCCGCTTCATTCTACAGCTTGTGGTCTCTGTG|GGCCCATTGCTAGAAGACTGGGACATAATCAGCCCCAAAGATGTCATTGGCTCCGACGTGTTGCTGGCTGAGAAACGGTCATCACTGACGACTGCCGCCCTGCCCTTTACACAGTCCATCCTCACTCAGGTGGGCCGTACCTTGTCTAAGGTCCAACAAGTGCTGAGCTGGTCGTATGGGGAAGATGTCAAGCCCTTCAAGCCACCCCTGAGCGATGCTGAGTTTCACACGTACCTGAACCACGAGGGCCAGCTCTCCCGACCCGAGGAGTTGCGCCTGCGGATCTATCATGGCGGTGTG 16 1.36344483440992e-05 0.7499392732130359 0.4763481286671189 Y Y 3.48849478967421 3.4670420551118304 3.4670420551118304 0 0.9937635574837308 0.0 Y 0.0 N Y 13602 2386 ENSG00000147155 ENSG00000068354 + - X X 48387104 48420997 coding coding EBP TBC1D25 48379546 48397845 + + 0.0 48385673 48417285 + - N - - N SA505 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 5 1.54016662382773 1.52054666683629 1.54016662382773 1.52054666683629 4 - - 0.9504779714793792 hTERT 5.0 417973 ACTCTGGAAAGAGTATGCCAAGGGAGACAGCCGATACATCCTGGGTGACAACTTCACAGTGTGCATGGAAACCATCACAGCTTGCCTGTGGGGACCACTCAGCCTGTGGGTGGTGATCGCCTTTCTCCGCCAGCATCCCCTCCGCTTCATTCTACAGCTTGTGGTCTCT|GTGGGCCCATTGCTAGAAGACTGGGACATAATCAGCCCCAAAGATGTCATTGGCTCCGACGTGTTGCTGGCTGAGAAACGGTCATCACTGACGACTGCCGCCCTGCCCTTTACACAGTCCATCCTCACTCAGGTGTTTTCAGGGACCCTAGG 16 0.6310756656133211 0.967642531096924 0.533093994280361 Y Y 3.4952810077893504 3.55025006787687 3.4952810077893504 0 0.960648904870873 0.0 Y 0.0 N Y 13602 2386 ENSG00000147155 ENSG00000068354 + - X X 48387104 48420997 coding coding EBP TBC1D25 48379546 48397845 + + 0.0 48385673 48417285 + - N - - N SA505 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 6 1.6775063227677802 1.52054666683629 1.6775063227677802 1.52054666683629 4 - - 0.987459109713496 hTERT 5.0 678530 CAGCCGGCTTCCACCCCAGTGGCTCTGTCCTGGCTGTGGGTACAGTGACTGGCAGATGGCTGCTGCTGGACACGGAGACCCATGACCTGGTGGCTATCCACACAGACGGCAATGAACAGATCTCAGTGGTCAGCTTCTCCC|CAGGCACTGCAGTCAGCGGTGAACTGACTTCATCCCAATCCCTCAGCCCCCACCAGGACCAGTCTGGAGTCCCTCCCCTGCCCCCATTGAAATTTCCCTTCCGTCCCCAAACTTACCTCTGATCTAGACCTTACTCACCTCCTTCCTGTTTCCTAAGACTCCTTCCTGCC 14 1.0 0.6059630318847989 0.431031763901438 Y Y 3.6759318169590096 3.68105312311849 3.6759318169590096 6 0.0 0.0 Y 0.0 N Y 1133 422 ENSG00000125746 ENSG00000177464 + - 19 19 46148887 46105466 coding utr5p EML2 GPR4 46110252 46093022 - - 0.0 46120023 46095955 - + N - - N SA505 1 0.0 1.0 1 0 1 N Y 0.0 0.0 7 1.33415707541765 1.11833754851186 1.33415707541765 1.11833754851186 4 - - 0.943435561010648 hTERT 5.0 240317 AGCCCCCAGCTTAAGCTTCAGCAGCTCCAGGGTAAATCCATCTCCGCCCAGAGCTGACTCCGGATCTGCCCCAGTGACAATAACAAGATAAATGCCTTCCATTCTCTTCGTACTTACAGGATGTAATCCACATATTTACACAGTGTTTCATTTGCG|GATCATGCGGCCAGATGATGCCAACGTGGCCGGCAATGTCCACGGGGGGACCATCCTGAAGATGATCGAGGAGGCAGGCGCCATCATCAGCACCCGGCATTGCAACAGCCAGAACGGGGAGCGCTGTGTGGCCGCCCTGGC 10 0.8038594825857378 0.636233607413714 0.6857069330525699 Y Y 3.47129812537077 3.54569782317086 3.47129812537077 1 0.0 0.0 Y 0.0 N N 5881 11699 ENSG00000069812 ENSG00000097021 + - 1 1 6484730 6454451 utr3p coding HES2 ACOT7 6472478 6324333 - - 0.0 6473111 6409926 - + N - - N SA505 1 0.241071428571429 1.0 1 0 1 N Y 0.241071428571429 0.0 5 1.09871759152042 1.02023776355467 1.09871759152042 1.02023776355467 4 - - 0.990106467923898 hTERT 5.0 692 ATTAGGAGAAGTGGTGGCCACAGTCGAAAAATCCCAAGGCCCAAACCTGCACCACTGACTGCTGAAATACAGCAAAAGATTTTGCATTTGCCAACATCTTGGGACTGGAGAAATGTTCATGGTATCAATTTTGTCAGTCCTGTTCGAAACCAAG|TGTGGGGTAGTTAAGAGCCTGTGACTTCAGACCTGTGGTCAACGGGGCCTTTCACCGGCCATCTCCCGCAGAGTACTTTTTCACAATCAGTTTTCTCGCAAGCAAAACGTGGAAAATAAGATCCACACCTCAC 10 1.0 0.265984517738072 0.0811448060393498 N Y 3.54040868314203 3.52720696927234 3.52720696927234 0 0.0 0.0 Y 0.0 N N 57580 3011 ENSG00000109861 ENSG00000123892 + - 11 11 88070955 87908635 coding upstream CTSC RAB38 88026778 87846431 - - 0.0 88033698 87909005 - + N - - N SA505 1 1.0 1.0 1 0 1 N N 0.0 1.0 5 1.2654872259476295 0.9319479570932132 1.2654872259476295 0.9319479570932132 4 - - 0.9001705169705642 hTERT 5.0 139805 GATGTTGGGAGGATACAGAGGAGATGCCACTTCTCACTCACCACTACCAGCCAGCCTCAGAAGGCCCCAGAGAGACCCTGCAAGACCACGGAGGGAGCGACACTTGAATGTAGAATAGGCAGGGGGCCCTGCCCCACCCCATCCAGCCAGACCCCACGCTGACCATGCGTCAGGGGCCTAGAG|CATAAAGCCTAACACGTATTAGGCTAATGTCACCGAGCAAAGAAAGCATCAAAGTGGCGGGTCGGGCCCTAAACCCACGATGGGAGATACCACATTCGGCCACAAGAGGGCGCGTCACATTTTCTCCAAG 3 0.81973727233909 0.6432237821705029 0.920048565523722 Y Y 3.46720988898118 3.74913061111987 3.46720988898118 0 0.0 0.0 Y 0.0 N N 196436 384 ENSG00000005884 ENSG00000005882 + - 17 17 48167845 48189516 coding upstream ITGA3 PDK2 48133332 48172101 + + 0.0 48167590 48171706 + - N - - N SA505 1 0.224137931034483 1.0 1 0 1 N Y 0.0 0.224137931034483 5 0.9809978495718028 1.13795750550329 1.13795750550329 0.9809978495718028 4 - - 0.965252806481787 hTERT 5.0 560157 AAGGGGAGGAGCCCCACAACAGGCAGACTGGGCAAAAATTAACCAGGGCTCCAACAGGCGAAGGTCACTGGACTGGGCAGGGGCACGCTCCGCCTGGGGAGAGGAGATCCAGGAACGGTGTGTGGAGCTGGGCTCGGGGGGTGCCTG|CTTTGAAGGGGGCAGAGCGTGGCAGTTAAGGATCAGGCTTCATATCTTGGCTGTGACACTTATTAGCTGAGTGGCCCTGGGTAAGTCACTTCTCTGTGCCTCAGTTTCCCCACCAGCAGATGGTAACGATGCTTTGCCTCTCAGGGTGGTAGTGAG 3 1.0 0.449090505651488 0.7899872626569598 Y Y 3.2718832157944604 3.40744620240479 3.2718832157944604 1 0.0 0.0 Y 0.0 N N 33557 880 ENSG00000166825 ENSG00000250021 - + 15 15 90358633 90456114 utr5p downstream ANPEP C15orf38-AP3S2 90328120 90377540 - - 0.0 90350040 90368192 + - N - - N SA505 1 1.0 1.0 1 0 1 N Y 0.0 1.0 5 1.4714967743577 1.07909763452898 1.4714967743577 1.07909763452898 4 - - 0.987452386493609 hTERT 5.0 236510 GTGTGTTTATTCTTTTCTCCCCGCCCCTCTTTGAGTTCTCCGCTCCCAAGGCTTCGCTTGGCCCACTGGCCTCCAGGTGAACCTCGGGGGTGTGGAGGGAACCGGTGCTCACGGCCTTATTTCCTCCGAATGGCAGTTTCTGTCTGGCGGGCTGAACTCATTT|CTGCTCTTCTCCACCATCCAGACGTTCAGCTACAGCTGGTGGGGGTGAGGGACTCTGCTCCGTGGCCGCCAGTGTGGGCTTCCCGGGCTAGCTCTGCGGCGAGGTGGGGGAGCCGAGTACGAGCCGGCAGAGGTGGGGCCGGCTGAGGGCGGAA 22 0.805891487655547 0.32085235601462 0.20195632949992887 N Y 3.5680785743660803 3.650822578814701 3.5680785743660803 0 0.993526913338234 0.0 Y 0.0 N N 347 1440 ENSG00000143363 ENSG00000213190 + - 1 1 151008189 151040970 intron utr5p PRUNE MLLT11 150980896 151030234 + + 0.0 150981667 151031955 + - N 2.79135018834953 0.0393488997849517 N SA505 1 0.0 1.0 1 0 1 N N 0.0 0.0 23 1.6088364732977598 1.10852757001614 1.6088364732977598 1.10852757001614 4 0.478260869565217 0.130434782608696 0.9001705169705642 hTERT 5.0 418814 GCACGGGCGCAGATGTAGGCACCGGTCCGAGTGCCTGCCCTCTGTCCCCGCGGCTGGGTCTCGTCTGCTCCGGTTCCTGGGCTCCTAATTCTTGGTCCAGCTTCTTCC|AGAATAACTGTGCTTGAAGAAGAAAATTCCCAACATGGACAAACCACGCAAAGAAAATGAAGAAGAGCCGCAGAGCGCGCCCAAGACCGATGAGGAGAGGCCTCCGGTGGAGCACTCTCCCGAAAAGCAGTCCCCCGAGGAGCAGTCTTCGGAGGAGCAGTCCTCGGAGGA 6 1.0 0.592667013325518 0.489099637023307 Y Y 3.37717580530765 3.4880537092967403 3.37717580530765 5 0.0 0.00357142857142867 Y 0.0 N Y 3007 619 ENSG00000133142 ENSG00000172465 + - X X 102842657 102885881 utr5p intron TCEAL4 TCEAL1 102831159 102883632 + + 0.0 102840552 102884813 + - N - 0.0765590809949629 N SA505 1 0.0 1.0 1 0 1 N Y 0.0 0.0 5 1.0889076130247 1.29491716143478 1.29491716143478 1.0889076130247 4 - 10.4 0.959270309967947 hTERT 5.0 229126 TGGTGGATAGACACTCGAGACCAGAAATCATATTTTTGCTGAAAGTAGATGATTTACCTGAGGATAATCAGGAACGTTTTAATAGCCTTTTCTCTCTAAGGGAGAAGTGGACAGAAGAAGATATTGCTCCATATATTCA|GAAGCCGGGAAGCCAAGCTCCGCGGGACCGCTTCATGCCGCTGACTGGTGTAGAGCCCGCCAGAATGAACAGGAAGAAAGGAGACAAGGGCTTTGAAAGCCCAAGGCCATATAAATTAACCCATCAGGTCGTCTGCATCAACAACATAAATTTCCAGAGAAAATCT 6 1.0 0.548933238636557 0.523348265363657 Y Y 3.5859375860788303 3.45041445226185 3.45041445226185 4 0.0 0.0 Y 0.0 N N 5548 7878 ENSG00000136982 ENSG00000064313 + - 8 8 120868250 120845103 coding utr5p DSCC1 TAF2 120846216 120743015 - - 0.0 120850499 120844838 - + N - - N SA537 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 5 1.34173927796045 1.34173927796045 1.34173927796045 1.34173927796045 4 - - 0.980551818239162 HCT116-stranded 0.0 41011 GTGCCCGGGAGATAAGTATGAGATGCGCAGCCACGGCCCCACCCACAGCCTGGTCATCCATGACGTTCGACCTGAGGACCAAGGCACTTACTGCTGCCAGGCCGGCCAGGACAGCACCCACACACGGCTGCTGGTAGAG|GGACCCGCTACATCAGCACGGAGCTGGGCATCAGGCAGAGGCTGCTGGTGGCGGTGCTGACCTCTCAGACCACGCTGCCCACGCTGGGCGTGGCCGTGAACCGCACGCTGGGGCACCGGCTGGAGCGTGTGGTGTTCCTGACGGGCGCACGGGGCCGCCGGGCCCCACCTGGC 24 0.9259342066633092 0.72479193039653 0.8718076666999229 Y Y 3.32696667658884 3.36720643949681 3.32696667658884 0 0.992828740202726 0.0 Y 0.4836692945962721 N Y 451 40479 ENSG00000124006 ENSG00000123989 + - 2 2 220436581 220408509 coding coding OBSL1 CHPF 220415451 220403669 - - 0.0 220416251 220406911 - + N - - N SA537 1 0.0 1.0 1 0 1 N Y 0.0 0.0 14 1.2941598709405802 1.34173927796045 1.34173927796045 1.2941598709405802 4 - - 0.97007185310094 HCT116-stranded 0.0 234520 AGCCACAGGTCTTTTTCTTGTTGGATAATTCTCCACCAAAATTTTCTCCTTGCAAAAGGGAAACTTCACCTTCAGCTGTAAATGTCAGGAAATGGGGTACATTGCTGAGAAAGCCTGGGAATCACTGCTCTTGTAAG|CTGAGGTCCCCGCCTGGCGCTCCGGCTGGCAGAGCGGCTGGCCGGCGACCGGCGGTCCCGGGCGGGCGGCGGACTCGGCGGCACTGCGCGCGGCAGCCTCCGCATCAGCAGCCGCCGCGGCAGCAGCACCAGCAGCGCACCCGCCTCTCAGTCGGCCGTGGCCTCCATTGCTCTCCCCACTGCCG 13 0.5084508404652229 0.7072971570475299 0.484425713191159 N Y 3.62361669590707 3.21075977977757 3.21075977977757 2 0.992723328286366 0.0 Y 0.0 N N 883 738 ENSG00000109265 ENSG00000174799 - + 4 4 57194791 56899270 utr5p downstream KIAA1211 CEP135 57036361 56815037 + + 0.0 57045450 56915465 - + N - - N SA537 1 0.284848484848485 1.0 1 0 1 N N 0.0 0.284848484848485 5 0.961104021801459 1.2846439895366002 1.2846439895366002 0.961104021801459 4 - - 0.9562185913346252 HCT116-stranded 0.0 555 TGTACTGCTATGAAGTGCAGTTGGAAAGCAAGGTGCGGCGGAAAGGCCTGGGGAAGTTCCTCATACAGATCCTGCAGCTCATGGCCAACAGCACACAGATGAAGAAGGTTATGTTAACAGTATTTAAACACAATCATGGTGCCTACCAGTTCTTCAGAGAAGCGTTGCA|GAATTGGCCGTTGGGCTTACCTCCTGCTTCGTGACCTTCCTCCTGCCAGCGGGCTGGATCCTGTCACACCTGGAGACCTACAGGAGGCCAGAGTGAAGGGGTCCGTTCTGTCCCTCACACTGTGACCTGACC 4 0.6946832520156999 0.306048549892074 0.4371558958121961 N Y 3.86529765513778 3.5514509715161 3.5514509715161 4 0.0 0.0 Y 0.0 N Y 1828 9337 ENSG00000110583 ENSG00000176340 + - 11 11 63724800 63744015 coding coding NAA40 COX8A 63706431 63742079 + + 0.0 63721521 63743697 + - N - - N SA537 1 0.0 1.0 1 0 1 N N 0.0 0.0 6 1.17996929409288 0.9801357846094092 1.17996929409288 0.9801357846094092 4 - - 0.921992395261064 HCT116-stranded 0.0 120618 CCAGAGGAGGACAAGGAGGAGAACAAGGATGATTCTGCCTCCAAATTGGCCCCAGAGGAAGAGGCAGGAGGGGCTGGCACACCCGTGATCACGGAGATTTTCAGCCTGGGTGGAACCCGCTTCCGAGATACAGCAGTCTGGTTGCCAA|GAGATCCAAGCCTCCTAAAGGCCAAGGAGCTGAGCACCATCTAGAAAGAATCCGACGCAGCCATCAGAAGCATAATGCTATTTTGGCTTCCATTAAGTCAAGTGAGCGGGATCGCTTGAAAGCTGAGTGGGACCAGCACAATGACTGCAAGATTTT 12 0.852677188104813 0.928793811396644 0.655896754628718 Y Y 3.8668252384476296 3.44143830342756 3.44143830342756 0 0.0 0.0 Y 0.0 N Y 3524 56 ENSG00000141644 ENSG00000172361 + - 18 18 47808144 47792892 coding coding MBD1 CCDC11 47793252 47753563 - - 0.0 47799047 47788589 - + N - - N SA537 1 0.0 1.0 1 0 1 N Y 0.0 0.0 5 1.22754870111275 1.13238988707301 1.22754870111275 1.13238988707301 4 - - 0.986175311132503 HCT116-stranded 0.0 266371 AGTAGGTGACCCCGCCCCTGGATTCTGGAAGACCTCACCATGGGACGCCCCCGACCTCGTGCGGCCAAGACGTGGATGTTCCTGCTCTTGCTGGGGGGAGCCTGGGC|AGCCCAGGGTGACAAGATTATTGATGGCGCCCCATGTGCAAGAGGCTCCCACCCATGGCAGGTGGCCCTGCTCAGTGGCAATCAGCTCCACTGCGGAGGCGTCCTGGTCAATGAGCGCTGGGTGCTCACTGCCGCCCACTGCAAGATGAATGAGTACACCGTGCACCTGGGCAGTGATACGCTGGGCGACAG 58 1.0 0.266709041879018 0.315395717187333 Y Y 3.30232144676095 3.44615838200292 3.30232144676095 0 0.990685358255452 0.0 Y 0.0 N Y 799 4278 ENSG00000129455 ENSG00000169035 + - 19 19 51504958 51487320 coding coding KLK8 KLK7 51499264 51479729 - - 0.0 51504354 51485170 - + N - - N SA537 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 29 0.8849769705696601 1.73189041552342 1.73189041552342 0.8849769705696601 4 - - 0.963250424759086 HCT116-stranded 0.0 266103 ATTCTTGAAGTCAGTGAGACCAAGAACCCACCAATTCCGGATACATTTTGGTGACCCAGATGGGACTATTACCTATCGCCAAGCGGTGAGACCACTGCCTATCGCTGAGCGGTGAGACTATCACCTATCGCCAAGCA|GTCAACGGCAGGGGTCTAAGGAGTGACTGCCCAACGTGAGGCTTCAAGATGAGCCAATTACCAATTATGCACGGCGTTTCTCCTTCTCTTCCTTCATTCCCATAGAGAATCCCATTCCTATCTCCTTCGCCAGCCCAAGGCAA 15 0.6733550018689699 0.986632859210307 0.3886019888406721 Y Y 3.79722016713641 3.58424216889964 3.58424216889964 3 0.9927267059770892 0.0 Y 0.00355871886121006 N N 2219 35811 ENSG00000104823 ENSG00000104824 - + 19 19 39322497 39342979 intron intron ECH1 HNRNPL 39306068 39327029 - - 0.0 39314037 39327516 + - N 1.81111511973251 0.838471744048098 N SA537 1 0.39622641509434 1.0 1 0 2 N Y 0.39622641509434 0.0 5 1.00868342882133 0.846913444953761 1.00868342882133 0.846913444953761 4 64.2 851.6 0.98727887787506 HCT116-stranded 0.0 249716 GCTTCAGAGCCTCCAGTGCCTGTGGGGCTGGAGGTGAAGTTGGGGGCCCTGGTGCTGCTGCTGGTGCTCACCCTCCTCTGCAGCCTGGTGCCCATCTGTGTGCTGCGCCGGCCAGGAGCTAACCATGAAGGCTCAG|GGGACTCCTCTCCAGGTTTCTCTAAGGAGATTGCAGCAGCCCTGGCCGGAGTGCCTGGCTTTGAGGTGTCAGCAGCTGGATTGGAGCTAGGGCTTGGGCTAGAAGATGAGCTGCGCATGGAGC 12 0.7737092841774871 0.564271061352059 0.52511795236036 Y Y 3.69209541149257 3.5310618119471497 3.5310618119471497 6 0.991901188242652 0.0 Y 0.0 N Y 3592 3491 ENSG00000143570 ENSG00000160741 + - 1 1 153940188 153931101 coding coding SLC39A1 CRTC2 153931575 153920145 - - 0.0 153935005 153920805 - + N - 2.48669089344561 N SA538 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 5 1.07845472183697 0.991793181689361 1.07845472183697 0.991793181689361 4 - 66.8 0.957782905801836 HCT116-stranded CGHSA0331 0.50 744740 CGCCGCTGCTCCAGCTCCACCTCACTGCGCACGGCCTCGATGGCCTGGTTGACCAGCTCCAACTCCAGCACATCCGGGCGCGGCTCCTCCCCCAGGCCCAGGGTGCCATTCTCCCTCTGCGCGGGGGGCTTGGGCAGCTCAGGGTTGTAGGGGTCGTAACCCAGCCCTG|TGTGCGTCCGCAGGTGCGACTTTAGGTGCGAGGACTTGTAGTAGGCTTTGGCGCAGTCCGGGAAGGGACAGCGGTGGCTCTTGGCGGCGGCGGAGGGCGCGGCGCCGGGGGCGCGGCCCGAGGACGGGGACGAGGCGGCTGAGGAGGAGGAGGCGGGCGAGGCGCCCCCCGGGGC 18 1.0 0.280667360888643 0.247465524465714 Y Y 3.37023110089298 3.5733677143949105 3.37023110089298 2 0.0 0.0 Y 0.0 N Y 4329 6858 ENSG00000079313 ENSG00000129911 - + 19 19 1848452 1863567 coding coding REXO1 KLF16 1815248 1852399 - - 0.0 1828630 1863040 + - N - 2.19739718370239 N SA538 1 0.443786982248521 1.0 1 0 1 N Y 0.0 0.443786982248521 8 1.55990772265705 1.60805302273906 1.60805302273906 1.55990772265705 4 - 84.25 0.9663169002026122 HCT116-stranded 0.50 105748 CCGAGCTGTGCCCGGGAGATAAGTATGAGATGCGCAGCCACGGCCCCACCCACAGCCTGGTCATCCATGACGTTCGACCTGAGGACCAAGGCACTTACTGCTGCCAGGCCGGCCAGGACAGCACCCACACACGGCTGCTGGTAGAGGG|ACCCGCTACATCAGCACGGAGCTGGGCATCAGGCAGAGGCTGCTGGTGGCGGTGCTGACCTCTCAGACCACGCTGCCCACGCTGGGCGTGGCCGTGAACCGCACGCTGGGGCACCGGCTGGAGCGTGTGGTGTTCCTGACGGGCGCACGGGGCCGCCGGGCCCCACCTGGCATGGCAGTGGTGACGCTAGGCG 33 0.7293191557268481 0.9011796590644392 0.7870441709587641 Y Y 3.28399842673177 3.33784113109357 3.28399842673177 0 0.993262999841947 0.0029239766081872198 Y 0.461039987355777 N Y 454 58923 ENSG00000124006 ENSG00000123989 + - 2 2 220436581 220408509 coding coding OBSL1 CHPF 220415451 220403669 - - 0.0 220416251 220406911 - + N - - N SA538 1 0.0 1.0 1 0 1 N Y 0.0 0.0 10 1.4251008824274298 1.91618294326391 1.91618294326391 1.4251008824274298 4 - - 0.9741372923123092 HCT116-stranded 0.50 2114 GTCAAGCTCTGGGATCTGCGCAAGCTTAAGAACTTTAAGACTTTGCAGCTGGATAACAACTTTGAGGTAAAGTCACTGATCTTTGACCAGAGTGGTACCTACCTGGCTCTTGGGGGCACGGATGTCCAGATCTACATCTGCAAACAATGGACGGAGATTCTTCACTTTA|CAGAGCCCCACGATGTCGGCCAACGCCACACTGAAGCCACTCTGCCCCATCCTGGAGCAGATGAGCCGTCTCCAGAGCCACAGCAACACCAGCATCCGCTACATCGACCACGCGGCCGTGCTGCTGCACGGGCTGGCCTCGCTGCTGGGCCTGGTGGAGAATGGAGTCATCCTCTTC 43 1.0 0.7231759636522341 0.434827994524832 N Y 3.5397463357327204 3.48337348351473 3.48337348351473 0 0.0 0.0 Y 0.0 N Y 6624 1454 ENSG00000110107 ENSG00000183134 + - 11 11 60674060 60623444 coding intron PRPF19 PTGDR2 60658202 60618413 - - 0.0 60665318 60621204 - + N - 45.9337649790878 N SA538 1 0.0 1.0 1 0 1 N N 0.0 0.0 23 1.70434362290308 1.64656926280467 1.70434362290308 1.64656926280467 4 - 0.260869565217391 0.983699502735258 HCT116-stranded 0.50 529414 GGCTCCGTTTCTGGCAGGAAATCATAATCTAGGTACTCATATTCGGTGGCCTGTCTCCGGTCCCGGGCAAGCAGGGGACCCAAGGCTTTCTCGGCTTCATCTGCCCAGGTGTCCCACAGCTGCAAGCTGTTGCCAGGGCCCAGTAGGATCAGCAACAGGAGGAGTTGCAGAGGCATGGCACC|ACACTGGCCGTGTCTGTGGTTTTCTTGGGGATGCTGATCAGGTCGCACTTCTTGTTTGCAGTGGGCTTGCTATCCAGAATGTTCTTCTTGACCACCTTGAGATCCCTGTTTTTGCCTGGAATGTACCCGTGCTTCAAGGAGATGAGGATTGGGTCTGCATTCTTGCCTTCGAACCACTCTTCTGCCTCCA 159 1.0 0.887163105761934 0.6298439364401149 Y Y 3.47076375903745 3.3948364779275098 3.3948364779275098 1 0.0 0.0 Y 0.0 N Y 2813 11360 ENSG00000110876 ENSG00000110880 - + 12 12 109027735 109125372 utr5p coding SELPLG CORO1C 109015686 109038885 - - 0.0 109018088 109042381 + - N - 2.11009317684032 N SA538 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 75 1.8006342230670902 1.88729576321471 1.88729576321471 1.8006342230670902 4 - 8.85333333333333 0.9889860616279 HCT116-stranded 0.50 648656 CTTCACTCCCTCCTTGTCAGGCACCAGAGACTGGTCCTGGTCATCTGCCAGCGGGGTTCCTGCCTGGCGGTAGATGCAGCGCACCGTGTAGCGCACTTCTGACCAGTAGTTCTGCAGCTGCTGAGGTTCCCGGTCCGCCTCTGCCGAAATTTCT|CACTGGCTGGTCAAGGCCGCCATGCCTCTCCTCCTTCTCCACGGTCCTGCGGCAGTCCGGGCACACCCACAGTGGCAGGTGCAGCACGCTGTTGCCCTTGGGAGCCATGGAAAGGGCCAATTTGCTCGCAGTCTTAATTCCACTCTCTAAGAATGATGAGTCTTTCCGTTCACTTCT 17 0.976812610471978 0.677897119938181 0.4561702497111321 Y Y 3.4655144718019804 3.41525614272 3.41525614272 6 0.993526052260992 0.0 Y 0.0 N N 1456 15335 ENSG00000125386 ENSG00000063978 - + 4 4 2734292 2627047 utr5p utr3p FAM193A RNF4 2626988 2463947 + + 0.0 2628137 2598056 - + N - 2.70376950931893 N SA538 1 0.0 1.0 1 0 1 N Y 0.0 0.0 6 1.19400344203379 1.61768208275546 1.61768208275546 1.19400344203379 4 - 54.3333333333333 0.9451432125290758 HCT116-stranded 0.50 482427 AACATGTCTCCGTTTTCATCTTCCAGTGATGCCTGAAAACTCACCATCTGAAAGGGAATCAGGCCTGTAGCTCGGATATGCACTGGCTCATCAACAAGTGCACTCACAGGGGTAGCTGTCAACTGGATCATTTTTTTAGTGTGGCACCTGGGATGATTCTTCAGGAATATCTTCAGCAAAACCTCAAA|ACCTGAATCGAGACCAAAATTCTCTACATGGTGTCCCTGAGACTGTCCACATGAAGACTCTTCTGGTAATGCCCGACACAGATCGCGCCGCCATCTTCGATGAGATCCACGGGCCTGAGCGCAGCCTTCAGCCAGCAGTGA 43 1.0 0.7178220070229259 0.383479080353922 Y Y 3.44615838200292 3.6035982586987 3.44615838200292 0 0.0 0.0 Y 0.0 N Y 3126 1728 ENSG00000136881 ENSG00000136897 - + 9 9 104145801 104160896 utr5p intron BAAT MRPL50 104122699 104149915 - - 0.0 104133745 104160783 + - N - 0.414083950787748 N SA538 3 0.0 1.3529411764705903 1 16 1 N Y 0.0 0.0 51 1.89692482323111 1.31918122224701 1.89692482323111 1.31918122224701 4 - 5.37254901960784 0.96386640799358 HCT116-stranded 0.50 648444 AAAGAATAAAAAAGGAATTGCAGTGCAACAAAGTACGTGAAAATCAGGTTTCAATAGAATGTGACACAACGTGCAAGGAAATGAAGCGGAAAGCATCTGAGATAAAAGAAGCAGAAGCCAAAGCTGCTCTTGAAGAAGAAAAACGAAGACAACAGG|TCTTGAGAGCTGATGACAATAACATGGGCAATGGCTGCTCTCAGAAGCTGGCGACTGCTAACCTCCTCCGGTTCCTATTGCTGGTCCTGATTCCATGTATCTGTGCTCTCGTTCTCTTGCTGGTGATCCTGCTTTCCTATGTTGGAACATTACAAAAGGTCTA 26 0.8384102157628391 0.8420586758870942 0.329828315952034 N Y 3.24061960172077 3.48271113610543 3.24061960172077 0 0.993609775641026 0.0 Y 0.00312499999999993 N Y 507 515 ENSG00000170448 ENSG00000145244 + - 4 4 47916653 47840123 coding coding NFXL1 CORIN 47849257 47596015 - - 0.0 47853112 47809064 - + N - - N SA538 1 0.0 1.0 1 0 1 Y N 0.0 0.0 15 1.51176242257505 1.36732652232902 1.51176242257505 1.36732652232902 4 - - 0.972117708863152 HCT116-stranded CGHSA0792 0.50 612413 ATTGGAAATAATAGCGCTGCAGCTGTGTCAATGTTGAAACAAGACTATAAAGAAGGAGAAATGACCTTGAAGTCAGCACTTGCTTTAGCTATCAAAGTACTAAATAAGACCATGGATGTTAGTAAACTCTCTGCTGAAAA|AGGATTATCTGAACCTTCTTCTATTGCAAAACATGAAGATAGTTTGCTTAAGGATTTATTTCAAGACTACGAAAGATGGGTTCGTCCTGTGGAACACCTGAATGACAAAATAAAAATAAAATTTGGACTTGCAAT 16 1.0 0.367638700136049 0.286807129726856 Y Y 3.5167965230840297 3.5827145855897897 3.5167965230840297 1 0.0 0.0 Y 0.0 N Y 17396 1300 ENSG00000041357 ENSG00000169684 + - 15 15 78841604 78887611 coding intron PSMA4 CHRNA5 78832747 78857862 + + 0.0 78839040 78873153 + - N - 1.08659144754834 N SA538 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 8 1.0206803617385698 1.2132615620666 1.2132615620666 1.0206803617385698 4 - 5 0.985830197391452 HCT116-stranded 0.50 745061 AACTTCCGCTTCCGGTTCCTAGCGTTAACTGCGACCGGGGTTCAGCGCTCGGGTGAGGAGCTGGTGGCGTCGGCAGGTTCGAGGCGATTCG|AGGCCGAGTGTACTACTTCAACCACATCACTAACGCCAGCCAGTGGGAGCGGCCCAGCGGCAACAGCAGCAGTGGTGGCAAAAACGGGCAGGGGGAGCCTGCCAGGGTCCGCTGCTCGCACCTGCTGGTGAAGCACAGCCAGTCACGGCGGCCCTCGTCCTGGCGGCAGGAGAAGATCACCCGG 47 0.7144971827047729 0.636840480743744 0.7138572444374379 N Y 3.36819965647335 3.77530342425761 3.36819965647335 0 0.0 0.0 Y 0.0 N Y 7197 2222 ENSG00000198258 ENSG00000127445 + - 19 19 9940791 9960358 utr5p intron UBL5 PIN1 9938568 9945933 + + 0.0 9938660 9949112 + - N - - N SA538 4 0.0 1.31818181818182 1 5 1 N N 0.0 0.0 22 0.991793181689361 1.77174704301789 1.77174704301789 0.991793181689361 4 - - 0.929134875690136 HCT116-stranded 0.50 744994 CCGAATCAGTAGGTGACCCCGCCCCTGGATTCTGGAAGACCTCACCATGGGACGCCCCCGACCTCGTGCGGCCAAGACGTGGATGTTCCTGCTCTTGCTGGGGGGAGCCTGGGC|AGCCCAGGGTGACAAGATTATTGATGGCGCCCCATGTGCAAGAGGCTCCCACCCATGGCAGGTGGCCCT 49 0.00032559984574559 0.4051033922788781 0.816322226101045 Y Y 3.30232144676095 3.44615838200292 3.30232144676095 0 0.9855860113421552 0.0 Y 0.0 N Y 1069 6985 ENSG00000129455 ENSG00000169035 + - 19 19 51504958 51487320 coding coding KLK8 KLK7 51499264 51479729 - - 0.0 51504354 51485170 - + N - - N SA538 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 5 0.770324801312125 1.46361712249304 1.46361712249304 0.770324801312125 4 - - 0.9191065044605948 HCT116-stranded 0.50 744998 TCAGTAGGTGACCCCGCCCCTGGATTCTGGAAGACCTCACCATGGGACGCCCCCGACCTCGTGCGGCCAAGACGTGGATGTTCCTGCTCTTGCTGGGGGGAGCCTGGGCAG|TGAGTACACCGTGCACCTGGGCAGTGATACGCTGGGCGACAGGAGAGCTCAGAGGATCAAGGCCTCGAAGTCATTCCGCCACCCCGGCTACTCCACACAGACCCATGTTAATGACCTCATGCTCGTGAAGCTCAATAGCCAGGCCAGGCTGTCATCCATGGTGAAGAAAGTCAGGCTGCCCTCCCGCTGCGAACCCCCTGGAACCACCTGTACTGTCTCCGGCTG 121 1.0 0.223011711972858 0.655922677506354 Y Y 3.37295958784206 3.46977054206092 3.37295958784206 0 0.9910177239554092 0.0 Y 0.0 N Y 1069 6985 ENSG00000129455 ENSG00000169035 + - 19 19 51504958 51487320 coding coding KLK8 KLK7 51499264 51479729 - - 0.0 51504354 51483743 - + N - - N SA538 1 0.0 1.0 1 0 2 N Y 0.0 0.0 58 0.79921198136133 1.92581200328031 1.92581200328031 0.79921198136133 4 - - 0.964347755127053 HCT116-stranded 0.50 435627 GAAATTGATCAGTGATAAAATTGGATCACTTGGATTAGGAACTGGAGAAGATGATGACTATGTTGATGATTTTAATAGTACCAGCCATCGCTCAGAGAAAAGTGAGATAAGTATTGGTGAAGAGATAGAAGAAGACCTTTCTGTGGAAATAGATGACATCAATACCAGTGATAA|GAGTCACCTCTACTTTCCTGCTACCGCTGCCTGTGAGCTGAAGGGGCTGAACCATACACTCCTTTTTCTACAACCAGCTTGCATTTTTTCTGCCCACAATGAGCGGGGAATCAATGAATTTCAGCGATGTTTTCGACTCCAGTGAAGATTATTTTGTGTC 7 0.6129697793385799 0.739690740127002 0.874832594100627 Y Y 3.56232542602083 3.37758638046158 3.37758638046158 0 0.993768656716418 0.0 Y 0.13384328358209 N Y 808 649 ENSG00000213066 ENSG00000112486 + - 6 6 167455906 167553184 coding utr5p FGFR1OP CCR6 167412670 167525295 + + 0.0 167447459 167549526 + - N - - N SA538 1 0.0 1.0 1 0 1 N Y 0.0 0.0 6 1.2614068621486 1.50213336255864 1.50213336255864 1.2614068621486 4 - - 0.961402496566652 HCT116-stranded CGHSA0270 0.50 743688 CCTGGCGCTTTCCTCACGGTCTGGGCTTGAGAGGAAGCCGGAGTCCTTGTCTAAAGTCAGCATCATCAAGAGACTGGGCGCAGCTGCCCTTGTGCCCGAGGCCCAGGACAGCCAGGTCACCAGCACCAAGA|GTGAATACATCAAGACCTGGAGGCCACGGTACTTCCTGCTGAAGAGCGACGGCTCCTTCATTGGGTACAAGGAGAGGCCCGAGGCCCCTGATCAGACTCTACCCCCCTTAA 21 0.979402330504914 0.931214650801933 0.915205878628632 N Y 3.19293127328835 3.90657048781565 3.19293127328835 1 0.0 0.0 Y 0.0 N Y 1140 4994 ENSG00000160392 ENSG00000105221 + - 19 19 40854434 40791443 coding coding C19orf47 AKT2 40825443 40736224 - - 0.0 40827935 40762961 - + N - - N SA538 1 0.0 1.0 1 0 1 Y N 0.0 0.0 8 1.07845472183697 1.2902940421978102 1.2902940421978102 1.07845472183697 4 - - 0.984806478859971 HCT116-stranded 0.50 2326 GAAAAGATGGCGGTCTTGGCACCTCTAATTGCTCTCGTGTATTCGGTGCCGCGACTTTCACGATGGCTCGCCCAACCTTACTACCTTCTGTCGGCCCTGCTCTCTGCTGCCTTCCTACTCGTGAGGAAACTGCCGCCGCTCTGCCACGGTCTGCCCACCCAACGCGAAGACGGTAACCCGTGTGACTTTGACTG|GGATCACAGTCACCTTCTATATAGCACCATCCCCAGGATGCAGGAGCCGGGGCAGATTGTGGAGACCTACACGGAGGAGGATCCTGAGGGAGCCATGTCTGTAGTCTCTGTG 23 0.6771913049920281 0.68820198612505 0.7355409806551859 Y Y 3.3974369838006098 3.5246463161926003 3.3974369838006098 2 0.991100511865984 0.0 Y 0.7419148441135409 N Y 5112 13533 ENSG00000213593 ENSG00000198561 + - 11 11 57508445 57587018 coding coding TMX2 CTNND1 57480072 57520715 + + 0.0 57480279 57563049 + - N - - N SA538 1 0.2441860465116281 1.0 1 0 1 Y Y 0.0 0.2441860465116281 9 1.79100516305069 1.65619832282107 1.79100516305069 1.65619832282107 4 - - 0.980619164226095 HCT116-stranded 0.50 107978 ATTTTGCTTGCCTGATGTTCAAACACCTGGTACACAAACCATCGGAGGAGAGAGTAAGAGAAATAATTATCAATGCTGTTCGGATAGAACAGGAGTTCCTCACTGAGGCCTTGCCTGTGAAGCTCATTGGGATGAATTGCACTCTAATGAAGCAATACATTGAGTTTGTGGCAGACAGACTTATGCTGGAACTGGGTTTTAGCAAGG|TGCTGGGAGACCGTGAAGTGCAAAGCAGATGGAGTCCAGGCCCTCGGGGAGACAGCACGCCAGTGAGGGAGATGGAGACCAATCACCCACCCAGTGTGCGGGGATGAGAAGCTCGGGAAGGTC 102 1.0 0.7612926228731459 0.562428212901509 Y Y 3.51360402781852 3.43105836246279 3.43105836246279 3 0.9918944808783442 0.0 Y 0.643357158647115 N Y 46696 1026 ENSG00000171848 ENSG00000163009 + - 2 2 10271545 10351851 coding utr5p RRM2 C2orf48 10262455 10281509 + + 0.0 10269281 10281981 + - N - - N SA538 2 0.9266055045871558 1.5471698113207502 1 29 2 N Y 0.0 0.9266055045871558 53 1.92581200328031 1.04956754178777 1.92581200328031 1.04956754178777 4 - - 0.98159084532862 HCT116-stranded CGHSA0554 0.50 406528 CGCTAGAGGAGTTGAACGTAGTAGAGCAGGTGCGGGTTCAGGTTAGCGACCCCGAGAGTACAGTGGCTGTGGCTTTCACACCAACCATTCCGCACTGCAGCATGGCCACCCTTATTGGTCTGTCCATCAAGGTCAAGCTTCTGCGCTCCCTTCCTCAGCGTTTCAAGA|CGGTCCCGGACGCGATGACCCTGAACGGCGGCGGCAGCGGAGCGGGCGGGAGCCGCGGTGGGGGCCAGGAGCGCGAGCGCCGTCGGGGCAGCACACCCTGGGGCCCCGCCCCGCCGCTGCACCGCCGCAGCATGCCGGTGGACGAGCGCG 11 1.0 0.373050577459323 0.523689175326006 Y Y 3.38912318237562 3.2739892081275896 3.2739892081275896 0 0.993354231974922 0.0 Y 0.980062695924765 N Y 4401 245 ENSG00000166595 ENSG00000166592 + - 16 16 66968326 66959547 coding utr5p FAM96B RRAD 66965959 66955582 - - 0.0 66967517 66959097 - + N - - N SA538 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 7 1.41547182241103 1.43472994244383 1.43472994244383 1.41547182241103 4 - - 0.985243540237306 HCT116-stranded CGHSA0477 0.50 248199 ACAAAACAATCAGTGTGGATAAGAAATATTCAGCTTGGTTTCTTTGGAAGTATATTTGGATTAATGGGTGTATACATTTATGATGGAGAACTGGTATCAAAGAATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCA|GCCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTGGTATTACATGAAACCTTTCCTAAACATACATTTCTGATGAACGGCTTAAT 10 1.0 0.79434172101952 0.247881311696144 N Y 3.73233517440054 3.6988816296077 3.6988816296077 0 0.0 0.0 Y 0.0100805998967244 N Y 2330 4224 ENSG00000117620 ENSG00000156875 + - 1 1 100492535 100548933 coding coding SLC35A3 HIAT1 100435345 100503653 + + 0.0 100480976 100515465 + - N - - N SA538 1 0.0 1.0 1 0 1 Y N 0.0 0.0 7 1.44435900246023 1.36732652232902 1.44435900246023 1.36732652232902 4 - - 0.9841376535461468 HCT116-stranded 0.50 483349 GCACTGTTGGAGCTGTAGAGGATGAGGATGGTGATGAGGGCAAAGAGGATCACGAACACTGCTGACCGCTGCTCTTTGTTGCTACTCATTTCTCTCCGGCGTCTGCTGAGGGGTAGGTGTCGGCGTCCTGCAGGTGGCCCTGGGGGCAGGGATGTGGGTTCA|CACCGGTTCTTGCCCGTCTCGTCCTGGAAGATCTGGTCGCAGTAGGCCATCATGCGCTCCGTGAAGGTGTACACCTGCAGGCCGGGGTACATCCTGGTGAGCTGCAGCAGCGTGCGGTAGGTGCGGCCGCCGAGCACCCGGTCCATGTGCCTGCCCTGGCCCCACACCATGTAGAGCGTGTCTCGGGCC 49 1.0 0.589235940617349 0.526715537100872 Y Y 3.17511211436896 3.61720120015252 3.17511211436896 0 0.0 0.0 Y 0.0 N Y 1978 3560 ENSG00000160408 ENSG00000136840 - + 9 9 130667687 130679317 coding intron ST6GALNAC6 ST6GALNAC4 130647600 130670165 - - 0.0 130658611 130674547 + - N - 1.16307210481797 N SA538 2 0.0294117647058824 1.69230769230769 1 18 1 N Y 0.0294117647058824 0.0 26 1.63694020278827 1.78137610303429 1.78137610303429 1.63694020278827 4 - 14.9230769230769 0.9560674693810992 HCT116-stranded 0.50 768124 TCCCCTGTGCACATGTTTACCTGATACAGCAGTGCTGCGTGTTGTACATACTTGGAACAACAAACTAGAAATACTGTACTTCTGTACCAACATTGCCTCCTAGCAGAGAAGTGTGTGTGTGACAAGCCAGTTCTACAGGCATTACCT|AGAGTGAAGACATTTCCACCTGGACACCTGACCATGTGCCTGCCCTGAGCAGCGAGGCCCACCAGGCATCTCTGTTGTGGGCAGCAGGGCCAGGTCCTGGTCTGTGGACCCTCGGCAGTTGGCAGGCTCCCTCTGCAGTGGGGTCTGGGCCTCGGCCCC 5 1.0 0.9434832718504228 0.254597567314572 Y Y 3.6988816296077 3.47825217735525 3.47825217735525 0 0.993219437612178 0.0 Y 0.0 N Y 7253 3094 ENSG00000131508 ENSG00000171604 + - 5 5 139008018 139063467 utr3p intron UBE2D2 CXXC5 138906016 139026884 + + 0.0 139006642 139059949 + - N - 0.082063681684991 N SA538 2 0.0 1.6 1 3 2 N Y 0.0 0.0 5 1.2036325020502 1.33843934227982 1.33843934227982 1.2036325020502 4 - 21.8 0.9675068231799908 HCT116-stranded 0.50 768123 GTCTCCAGCACTAACTATTTCAAAAGTACTCTTGTCCATCTGTTCTCTGTTGTGTGATCCCAATCCAGATGATCCTTTAGTGCCTGAGATTGCTCGGATCTACAAAACAGATAGAGAAAA|AGTGAAGACATTTCCACCTGGACACCTGACCATGTGCCTGCCCTGAGCAGCGAGGCCCACCAGGCATCTCTGTTGTGGGCAGCAGGGCCAGGTCCTGGTCTGTGGACCCTCGGCAGTTGGCAGGCTCCCTCTGCAGTGGGGTCTGGGCCTCGGCCCCACCATGTCGAGCCTCGGCGGTGGCTCCCAG 19 0.8857118938740791 0.6695527026994289 0.652886253849676 Y Y 3.58424216889964 3.47080361183081 3.47080361183081 1 0.991693722943723 0.0 Y 0.0 N Y 7253 3094 ENSG00000131508 ENSG00000171604 + - 5 5 139008018 139063467 coding utr5p UBE2D2 CXXC5 138906016 139026884 + + 0.0 139003046 139059949 + - N - 0.0820190220895815 N SA538 1 0.0 1.0 1 0 2 N Y 0.0 0.0 6 0.905131641541747 1.17474532200099 1.17474532200099 0.905131641541747 4 - 18.1666666666667 0.989456436733844 HCT116-stranded 0.50 577758 GGCCAGGCGCCGGGGCAGGAAGGGAGGCGGCCGCCGTGCCATTCTTAAAGGCGCCCGAGTGTAGGCGACAGGCCGCTGACGGCCGGAAGGAAAATGAGTGAGTCTTTGGTTGTTTGTGATGTTGCCGAAGATTTAGTGGAAAAGCTGAGAAAGTTTCGTTTTCGCAAAGAAACGAACAACGCTGCTATTATAAG|TATATGAGTAGACCAGTGATGAGTGGCCCAGGACTCTATGACCCTACAACCATCATGAATGCAGATATTCTAGCATATTGTCAGAAGGAAGGATGGTGCAAATTAGCTTTTTATCTTCTAGCATTTTTTTACT 12 0.479197922649966 0.25849558569701503 0.370411255593789 N Y 3.49744043328497 3.4682429587510697 3.4682429587510697 1 0.0 0.0 Y 0.0 N Y 5681 10826 ENSG00000197045 ENSG00000100528 + - 14 14 54955914 54908149 coding coding GMFB CNIH 54941202 54893654 - - 0.0 54950389 54897122 - + N - - N SA538 1 0.0 1.0 1 0 2 N N 0.0 0.0 8 1.67545644285387 1.08808378185338 1.67545644285387 1.08808378185338 4 - - 0.9713589167927128 HCT116-stranded 0.50 249684 GAAATGAAAAGATTGCTGTCCACTGCACAGTTCGAGGGGCCAAGGCAGAAGAAATCTTGGAGAAGGGTCTAAAGGTGCGGGAGTATGAGTTAAGAAAAAACAACTTCTCAGATACTGGAAACTTTGGTTTTGGGATCCAGGAACACATCGATCTGGGTATCAAATATGACCCAAGCATTGGTATCTACGGCCTGGACTTCTATGTG|CTATTGAAATATTTGAAGAAACTCTCCACCCTGCCTATTACAGTAGACATTCTTGCGGAGACTGGGGTTGGGAAAACAGTAAATAGCTTGCGAAAACACGAGCATGTTGGAAGCTTTGCCAGGGACCTAGTGGCCCAGTGGAAGAAGCTGGTTCCTGTGGAACGAAATGCTGAGCCTGATGAACA 134 1.0 0.932602612227742 0.426545218329454 N Y 3.80041266240192 3.32320511986986 3.32320511986986 0 0.994608383894098 0.0 Y 0.973041919470491 N Y 41682 17553 ENSG00000142676 ENSG00000011007 + - 1 1 24022915 24088549 coding coding RPL11 TCEB3 24018269 24069645 + + 0.0 24021281 24075511 + - N - - N SA538 4 0.0 2.14942528735632 1 63 1 Y N 0.0 0.0 87 1.98358636337872 1.8102632830834904 1.98358636337872 1.8102632830834904 4 - - 0.944157774955914 HCT116-stranded CGHSA0320 0.50 1739 ACTTATTATTCAAGATCAAACCAGAAGATGCCATGGACTTTGGCATCTCCCTTCTCTTCTATGGCCTCTACTATGGAGTTCTGGAACGGGACTTTGCAGAAATGTGTGCAGACTACATGGCATCTACCATAGGG|AGAAGAGGACGTTGTCACAGATAAAGAGCCAGGCTCACCAGCTCCTGACGCATGCATCATGACCATGAGACACAACTGGACACCAGACCTCAGCCCTTTGTGGGTCCTGCTCCTGTGTGCCCACGTCGTCACTCTCCTGG 14 0.5827832866961989 0.7830070757963741 0.25876911100225897 Y Y 3.52105259334297 3.62101619003398 3.52105259334297 0 0.0 0.0 Y 0.0 N Y 325 1623 ENSG00000137522 ENSG00000137496 + - 11 11 71708643 71716761 coding utr5p RNF121 IL18BP 71639747 71709587 + + 0.0 71701763 71710973 + - N - - N SA538 1 0.0289855072463768 1.0 1 0 1 N Y 0.0 0.0289855072463768 6 1.0206803617385698 1.32881028226342 1.32881028226342 1.0206803617385698 4 - - 0.947830577459958 HCT116-stranded 0.50 744190 CGGGACACAGCCAGCCCTGTCCCTGCCTAGCCTTTAGCCCTGTCCCCACTCACGTGGCTTCTCAGCGGGCTGCATGGAATGTCTGGTAGCTCACCACACTTCTGGCTTCCATTTGTCTTCACTCAACGTCAGGGTGGGGGAGTGGTGCTGGCCAATCACAGGAGAGAGC|CTGTTCCCACAGGCTCCATTATTCAAACTTTGGGGGAGGAAATCAGGGCTGGACAGATCATCAACTGCTGCTGCTGACAGACTGTGTTCCTGCCATGATGGGGACAGGCCTGCCCCAAACCAGGGTGGAGTGAAGGGGTCAGCCCAGGCTTAGTGGGAGCCCCTTAGTCTT 15 1.0 0.496932857345485 0.755882893513147 Y Y 3.22423474015539 3.44086924197409 3.22423474015539 0 0.0 0.0 Y 0.0 N N 6079 246 ENSG00000105341 ENSG00000177191 + - 19 19 41946622 41934635 utr3p utr5p ATP5SL B3GNT8 41937223 41931265 - - 0.0 41937997 41934624 - + N - 20.8067632850242 N SA538 1 0.0 1.0 1 0 1 N Y 0.0 0.0 8 1.53102054260785 1.53102054260785 1.53102054260785 1.53102054260785 4 - 0 0.9862286337140892 HCT116-stranded 0.50 195118 TCAAAAGCAAGAAAAACGGATATTTACAAACTTCCATCGCCAGCTTTTTTGTTGGATTGACAAGTGGATCGATCTCACGATGGAAGACATTAGGAGAATGGAAGACGAGACTCAGAAAGAACTAGAAACA|CCCACGACCTCCCTGCAAACAAGGCCTCAGCATCCCAGCCTGGCAGCCACTTGCAGTGCCTGTCTGTCCACTGCACAGACGACGTGGGTGACGCCAAGGCTCGAGCCTCCGTGCCCACCTGGCGGTCCCTGCATTCTGACATCTCCAACAGATTTGGGACATTCGTGGCTGCCCTAACTTGAATG 3 0.34752987447482897 0.638091865410317 0.490660028184373 Y Y 3.07101108092519 3.2038455805864303 3.07101108092519 3 0.0 0.0 Y 0.0 N Y 4271 1553 ENSG00000180957 ENSG00000169184 + - 22 22 28316122 28197486 coding coding PITPNB MN1 28202413 28144265 - - 0.0 28254375 28147084 - + N - - N SA538 1 0.0 1.0 1 0 1 N Y 0.0 0.0 5 1.01105130172216 0.953276941623755 1.01105130172216 0.953276941623755 4 - - 0.98427244875576 HCT116-stranded 0.50 143189 CGCCAAGAGATCAAAGATAAAATCTTTTGTGAAAGTGTATAACTACAATCACCTAATGCCCACAAGGTACTCTGTGGATATCCCCTTGGACAAAACTGTCGTCAATAAGGATGTCTTCAGAGATCCTGCTCTTAAACGCAAGGCCCGACGGGAGGCCAAGGTCAAGTTTGAAGAGAG|GCCCTCCACGCCCTTCAGGAGGAGCAGGCCAGACTCAAGATGAGGCTGTGGGACCTGCAGCAGCTGAGAAAGGAGCTCGGGGACTCCCCCAAAGACAAGGTCCCATTTTCAGTGCCCAAGATCCCCCTGGTATTCCGAGGACACACCCAGCAGGACCCGGAAGTGCCTAAGTCTTTAGTTTCCAATTTGCG 64 0.8561785411651559 0.8413620185516891 0.525321011917155 Y Y 3.2693225627147204 3.28655907981151 3.2693225627147204 0 0.0 0.0 Y 0.0 N Y 38007 977 ENSG00000131469 ENSG00000068079 + - 17 17 41154976 41166473 coding coding RPL27 IFI35 41150290 41158742 + + 0.0 41154800 41164196 + - N - - N SA538 5 0.0 1.58620689655172 1 11 1 N Y 0.0 0.0 29 1.56953678267345 1.8584085831655 1.8584085831655 1.56953678267345 4 - - 0.9712167359508672 HCT116-stranded 0.50 577731 TGGATTCTATACTGATGGAACGTCGAATTAGACCATGGATTAATAAGAAAATCATAGAATATATAGGTGAAGAAGAAGCTACATTAGTTGATTTTGTTTGTTCTAAGGTTATGGCTCATAGTTCACCCCAGAGCATTTTAGATGATGTTGCCATG|AATGACAATAGAGAACGGCAGGAGCACAACGACAGACGGAGCCTTGGCCACCCTGAGCCATTATCTAATGGACGACCCCAGGGTAACTCCCGGCAGGTGGTGGAGCAAGATGAGGAAGAAGATGAGG 8 1.0 0.565826369549822 0.915418247645977 Y Y 3.35463656781289 3.23693259291531 3.23693259291531 3 0.0 0.0 Y 0.0 N Y 22319 2796 ENSG00000119707 ENSG00000080815 + - 14 14 73588122 73690399 coding coding RBM25 PSEN1 73525144 73603126 + + 0.0 73581041 73637505 + - N - - N SA538 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 7 0.8569863414597391 1.03030942175497 1.03030942175497 0.8569863414597391 4 - - 0.990303849252558 HCT116-stranded 0.50 636749 CGGCGTCCGGGTCGTCGGCGTGGAGCACGGTATTCCGCCACGTCCGGTATGAGAACCTGATAGCGGGCGTGAGCGGCGGCGTCTTATCCAACCTTGCGCTGCATCCGCTCGACCTCGTGAAGATCCGCTTCGCC|GGATCTTCTAAGGGTGTGAGGATACAGGCGTCAAAGACCCCGTGCTGAGACAGCTCCATAACAACATGCAGATATTTGGCAATGAGGGTTCAGAAGAGGACTTGCTGTGGAGAAGAGAGAAAAGAGATGGGAAGACTCTGTGAATGAATAGAGAACACTCTGCAAGCATCCCAGTTCCTTTGGTTGCCCTGCAGTCTGCAG 26 0.871489887072338 0.8450568582635559 0.290993687331979 N Y 3.48696720636436 3.660633458326 3.48696720636436 1 0.992559523809524 0.0 Y 0.0 N Y 1397 398 ENSG00000164933 ENSG00000247081 + - 8 8 104427417 104311000 coding intron SLC25A32 RP11-318M2.2 104410863 104169218 - - 0.0 104427012 104258912 - + N - - N SA538 1 0.0 1.0 1 0 1 N N 0.0 0.0 13 1.38658464236182 1.8584085831655 1.8584085831655 1.38658464236182 4 - - 0.981320779282796 HCT116-stranded 0.50 143222 GTAGTATGGGGCACTTGGTTTGGTTGCAGAGTAAGAAGGTGGAAGAATGAGCTGTACTTGGTTAAGCAGTTGAAACCTTTTTTGAGCAGGATCTGTAAAAGCATAATTGAATTTGTTTCACCCCCGTGGATTCCAGTGGGCCCGACAGCGCAACAG|ACTATAGACCAGTTTGAATATGATGGTTGTGACAATTGTGATGCATATCTACAAATGAAGGGTAACCGAGAGATGGTATATGACTGCACTAGCTCTTCCTTTGATGGAATCATTGCGATGATGAGTCCAGAGGACAGCTGGGTCTCCAAGTGGCAGCGAGTC 11 0.907758384462952 0.8326524872524791 0.0710008780593288 Y Y 3.4451253122330296 3.418448637985509 3.418448637985509 2 0.993609838437425 0.0 Y 0.009524957800819859 N Y 12906 8026 ENSG00000108375 ENSG00000213246 + - 17 17 56494956 56430454 utr5p coding RNF43 SUPT4H1 56429861 56422539 - - 0.0 56494378 56428869 - + N - - N SA538 3 0.0 1.4 1 1 1 N Y 0.0 0.0 5 1.33843934227982 1.2902940421978102 1.33843934227982 1.2902940421978102 4 - - 0.96318912636525 HCT116-stranded 0.50 483310 AAGCAGTACAGCTTCCTCGAGAGGGACAAGAAGACCAAGGTCTGACTAAGGATTTCAGCAATAGTCCTTTGCATCGCTTTAAAAAGCCGGGCTCTAAAAACTTCCAGAATATCTTTCCACCATCAGCCACTCTGCATCTTTCCAACATTCC|GTTTAGACGTCTGTGCCACTTGCCATGAACATGCCACATGCCAGCAAAGAGAAGGGAAGAAGATCTGTATTTGCAACTATGGATTTGTAGGGAACGGGAGGACTCAGTGTGTTGGTAAGTTCTGAACTCTGGGTTAAGTTGAAAAGCTGAATCGAG 14 1.0 0.701809246836939 0.603190332394459 Y Y 3.0867335950812698 3.60785432895764 3.0867335950812698 5 0.0 0.0 Y 0.0 N Y 7497 598 ENSG00000119314 ENSG00000106868 + - 9 9 115095947 114937688 coding coding PTBP3 SUSD1 114980715 114803065 - - 0.0 114989691 114919893 - + N - 2.06149372324891 N SA538 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 7 1.30955216223061 1.32881028226342 1.32881028226342 1.30955216223061 4 - 3.42857142857143 0.9483469025837672 HCT116-stranded 0.50 648575 GAGGTTTTTACCTCGACCTCCAGGTGAGAAAGGACCTCCAAGAGGTGGTGGCAGGGGAGGCCGAGGAGGAGGAAGAGGAGGAGGTGGCAGAGGTGGTGGCAGAGGCGGTGGTTTTAGAGGTGGAAGAGGAGGTGGAGGTGGGGGCTTCAGAGGAGGAAGAGGTGGTGGTTTCAGAGG|TATGATAAGTATTATCAGCAACATAATAGTTCTGGGCATCTTCATTAAGTACAAGGAACTTCGGACACCCACAAATGCAATTATTATTAACCTGGCTGTTACTGATATAGGGGTCAGTAGCAT 15 1.0 0.238578025581651 0.619609624284454 Y Y 2.98098634482147 3.4722913423473 2.98098634482147 1 0.0 0.0 Y 0.0 N Y 3457 277 ENSG00000109534 ENSG00000180245 + - 4 4 110745893 110765760 coding coding GAR1 RRH 110736666 110749150 + + 0.0 110745189 110754295 + - N - 0.0317548011147955 N SA538 2 0.4533333333333329 1.5 1 3 1 Y Y 0.4533333333333329 0.0 6 1.4251008824274298 0.8280991614105341 1.4251008824274298 0.8280991614105341 4 - 0.166666666666667 0.90445727745997 HCT116-stranded 0.50 249132 AGATCCTTAGCAACAATCTGATTGTTGTTCATTGAGGCAAAGGCAAATATCAGGTGGGTGCAGAGAAAGGGGTCCAGGTCATGGGGCAAGATCGAGGCAGGGCCTGGCCGACTGTGTGCCCAGTTGGTGAAATAACACACGAGTTTATGGGCAGCACC|TGAATCGGAGGCCACTAGAATACCTCTCTCCCCAACCCAAGTGAGGTCAGCCACTCCAGCCTCCGTTTGGACTCCGGCGGAGCAGAAGCCTTCGTTGGGGGCGGCACAGGGGTCCTTAAAAAGCCAGAGGGAGCCGGCCCAGCAG 17 1.0 0.8898888918800799 0.6928983198573989 N Y 3.46448140203209 3.53039946453785 3.46448140203209 0 0.993126134301271 0.0 Y 0.0 N Y 2454 3963 ENSG00000085465 ENSG00000116455 - + 1 1 111970399 111991998 coding coding OVGP1 WDR77 111956936 111982512 - - 0.0 111969263 111991241 + - N - 1.69829192694082 N SA538 1 0.0 1.0 1 0 1 Y N 0.0 0.0 18 1.64656926280467 1.4732461825094398 1.64656926280467 1.4732461825094398 4 - 23.3888888888889 0.9889860616279 HCT116-stranded CGHSA0371 0.50 248418 GCATCACAGATTGGCTGCAGTGCGCCTGGCTACCTTCCTACCTCGCTGGCTTGGCATCCTCAGCAAAGTGAAGTCTTTGTCTTTGGTGATGAGAATGGGACAGTCTCCCTTGTGGACACCAAGAGTACAAGCTGTGTCCTGAGCTCAGCTGTACACTCCCAGTGTGTCACTGGGCTGGTGTTCTCCCCA|CACAGGGCTGGTTCTTGTGCTGAAACACCACGATGGTGCTGCCCATAAACTCGTGTGTTATTTCACCAACTGGGCACACAGTCGGCCAGGCCCTGCCTCGATCTTGCCCCATGACCTGGACCCCTTTCTCTGCACCCACCTGATATTTGCCTTTGCCTCAATGAACAAC 22 0.928016599063878 0.7105735562704492 0.456174309815042 N Y 3.17295268887334 3.53296011761759 3.17295268887334 0 0.99409932257586 0.0 Y 0.0 N Y 3963 2454 ENSG00000116455 ENSG00000085465 + - 1 1 111991998 111970399 coding utr5p WDR77 OVGP1 111982512 111956936 - - 0.0 111985275 111969713 - + N - - N SA538 1 0.0 1.0 1 0 1 Y N 0.0 0.0 24 1.96432824334592 1.55027866264065 1.96432824334592 1.55027866264065 4 - - 0.980688294992744 HCT116-stranded CGHSA0371 0.50 107624 GTATCTGGATGGCATTCACTCTGAAGTTTGACAGCAAGTCCATTTAGCTCAAGGCAGAACTGCCTTAAATGTTCATACTTCCACACACCTTCATCTTGGCCTTCAGGTGGTTCAAGAATTTTGTCAATATTGGAGCAATCTGCTCTTATGTTCTGTTGAATATAC|ATTACTCCCTCCGCCTCAGACTCGTACTCTGCTCTAGTGTAGCGCCGCAAAGAGACTCGCAGTCCGGCCCTGGCGACACGTGAAAAAATCACCCAGCGCGCAGGCGCGCTCGCCCCAGCGGTCGCCGCTAGCCCCCTCGCCCCT 43 1.0 0.909793735514693 0.214443947151946 Y Y 3.57696143724454 3.4439989565073 3.4439989565073 6 0.9930779569892472 0.0 Y 0.0 N Y 7139 35402 ENSG00000115540 ENSG00000115541 - + 2 2 198418423 198368181 coding coding MOB4 HSPE1 198380295 198364718 + + 0.0 198400254 198365163 - + N - 0.448503262921436 N SA538 3 0.0 1.72727272727273 1 12 2 N Y 0.0 0.0 22 1.56953678267345 1.38658464236182 1.56953678267345 1.38658464236182 4 - 635.227272727273 0.9435708376638492 HCT116-stranded 0.50 768238 ATCCTTCCATCCCTCCAAAAAATTTACCCAGAGTCTTTTAGTCCTGCTATACAGCTGCACCTTGTACATCAAGCTCCATGTAATGTTCCTCCTTACCTCTCAAAGAATGAATCAAACCTTGGGGACCTCTTACTGGGCTTTCTTAAATATTATGCTACAGAATTTGA|ACAGATGTAAGCCAGTCAGTAGCTGGGCTTCATCTTGCATATTCCTAGGAGGAAATATGTTTATGAAGTGATGGCAAACGCGGCTGCTGCATTGGTCAGGAATGATAACCGCAGAGGAATTTAAACCCAGCCTTAAGGAGTAGGTAGAATTTACAGTTGCAGAAGTGGAGTATTGTCGGGGCTCTGCAT 20 0.7460948806898909 0.535577160246542 0.68804661248831 Y Y 3.2668017624283303 3.63721963736088 3.2668017624283303 1 0.0 0.0 Y 0.0 N N 2253 3413 ENSG00000164329 ENSG00000164309 + - 5 5 78982471 79096063 coding intron PAPD4 CMYA5 78907943 78985700 + + 0.0 78964851 79023365 + - N - 0.0266184998574009 N SA538 1 0.0 1.0 1 0 1 N Y 0.0 0.0 10 1.60805302273906 1.8102632830834904 1.8102632830834904 1.60805302273906 4 - 0 0.978673188475869 HCT116-stranded 0.50 143389 GTGGTGGGGGTGCCGGCGGGGGAGCCGGTGGAGACAGAGGCAGGGGTGGCGCCTCCATGCGGGGTTCCTCCACAGGAAGGGTATGTGCCAGCCTGGCCAGGCTATTGGCCTTCTTCTGTTCCTGCTCTCGCTCCTGCTCCAAGCGAAGCCGCTCCTGCTCCT|TCCTTTCATCCTCCGTGGGTTCCGGGTTTTCCTCCTGGGACAGGGACTCCTGGCTCGGGCACGGGCCCTCCACAGCGGCAGCCTCGCCTTCCCGCAGAGCAGGCCCACAGGGGGTCCTCTCCTGGGGGCCCCTGGC 26 1.0 0.9877719245193608 0.64122933685589 Y Y 3.00822273295264 2.94955489687844 2.94955489687844 1 0.0 0.0 Y 0.0 N N 2812 4670 ENSG00000070444 ENSG00000127804 - + 17 17 2304412 2415185 coding coding MNT METTL16 2287354 2319343 - - 0.0 2298748 2323551 + - N - 1.77789297900572 N SA538 1 0.305343511450382 1.0 1 0 1 Y Y 0.305343511450382 0.0 8 1.2614068621486 1.2517778021322 1.2614068621486 1.2517778021322 4 - 20 0.9869384782430508 HCT116-stranded 0.50 630779 GCACAGTCCATGATGCCTGTTCCCTTCATGTCGGTGATGTGGAGCAGCTCCCCTGAGCTCTGCAGCTAGTATCTCCAGCTTCAGAGGCAGATTGTGCAATGTCACTGCATGCTTCTGGCTGGTTCTCAGAAACTGAATTCTATGGAGCTATCTGACAACACATGGGAAACGATCAAAAAGACTCTCCCAGCAGGCAAACTTT|GACTGCAGCTGAGACAGGACGTGGGGGAGGAGGGTAGAGTCCTCGAGAAAGAACCCTACGGAGAGGGTGGCTCAGTCAGTGGTCGATCTCCGGTACCAAAACCGCGCTCTGAAGTCATCGCTGCACGTCATGAACCCGGGGTTGGTG 11 0.637101791220814 0.468421917978151 0.435941115164192 Y Y 3.21431880750704 3.0537745638283904 3.0537745638283904 0 0.0 0.0 Y 0.0 N N 1090 2788 ENSG00000087589 ENSG00000101138 - + 20 20 55034396 54979518 utr5p utr3p CASS4 CSTF1 54987168 54967427 + + 0.0 54987342 54978854 - + N - 1.26206311510135 N SA538 1 0.0 1.0 1 0 1 N Y 0.0 0.0 7 1.8391504631327 1.2517778021322 1.8391504631327 1.2517778021322 4 - 36.8571428571429 0.9528817069902008 HCT116-stranded 0.50 636291 AGGACTTTCTACGGAGGAACCAAGATAAAAATGTGAGAGATGTAATATATGACATTGCCAGTCAAGCACACTTGCACCTAAAGCAT|GCTATTAGTGAAAGATGGTGGATCGCTTGGCAAACAGTGAAGCAAATACTAGACGTATAAGTATAGTGGAAAACTGTTTTGGAGCAGCTGGTCAACCTTTAACTATACCTGGACGAGTTCTTATTGGAGAAGGAGTATTGACTAAGTTGTGCAGGAAAAAGCCCAAA 13 0.33748888111567305 0.383736831565861 0.5205075106484529 Y Y 3.5303596117444904 3.64553343878587 3.5303596117444904 0 0.0 0.0 Y 0.0 N Y 710 2259 ENSG00000156170 ENSG00000175895 + - 8 8 96128683 96168912 coding utr5p NDUFAF6 PLEKHF2 95907995 96146032 + + 0.0 96060786 96166259 + - N - - N SA538 1 0.0 1.0 1 0 1 N Y 0.0 0.0 13 1.41547182241103 1.4732461825094398 1.4732461825094398 1.41547182241103 4 - - 0.96290374758506 HCT116-stranded 0.50 446491 GCAATGCGCACGCGCAGTGGCTTTGAAGGCGGGGCAACAAAGCCTGTGGCCGATGTGGCGCTCCTCGGCCCGCGCTTCAGTGGTTATGACAGTGTTCGCTCTAAGGGGAGAAGGAATGTGTGACCATTTCCAAC|GGTCAGTCACCACGAACAGGGGCACTCGGCATGCTGCCCCAGCACTGGAGAAGCAGCGCTGTGGGGGCAATCTGTCACACTCTCAGAGTCTGGGACTTGACTTGCTACCAACAACTGCTGTGCAATTCTGCTGAGCAGGAATATCATGAGCTGTTCAATAATGAC 11 1.0 0.7749753887968861 0.109213071021983 Y Y 3.7574444125448494 3.5010341561346 3.5010341561346 0 0.992562189054726 0.0 Y 0.0 N Y 453 375 ENSG00000230844 ENSG00000147119 + - X X 46407671 46457843 intron intron ZNF674-AS1 CHST7 46404928 46433219 + + 0.0 46405062 46457195 + - N - - N SA538 1 0.0 1.0 1 0 1 N Y 0.0 0.0 14 0.914760701558148 1.55027866264065 1.55027866264065 0.914760701558148 4 - - 0.987044461630012 HCT116-stranded 0.50 249532 GTGTAACCAGCTGGGAGCCAGCCGGCAGGACGCTGTGAGTTGGCGTGCTAGTGGGATGGCAGATGAGGAAGAAGACCCCAC|GGCTATCAATATGACGGCTGAAGAAACAGTGAATGTAAAAGAGGTTGAAATCATTAAGCTAATTTTGGACTTCCTGAATTCAAAGAAGCTTCACATTAGTATGCTGGCCCTGGAGAAGGAAAGTGGAGTCATAAATGGCCTGTTTTCAGATGATATGCTTTTCCTGAGGT 17 0.9630507685811792 0.35553240788094104 0.206975757872304 N Y 3.47911741325579 3.5203902459336605 3.47911741325579 0 0.0 0.0 Y 0.0654516950813245 N Y 123 2314 ENSG00000197780 ENSG00000085433 + - 1 1 109618624 109584850 coding utr5p TAF13 WDR47 109605121 109512836 - - 0.0 109618543 109566143 - + N - - N SA538 1 0.0 1.0 1 0 1 N N 0.0 0.0 8 0.7125504412137149 1.52139148259145 1.52139148259145 0.7125504412137149 4 - - 0.960202165286724 HCT116-stranded 0.50 745177 ACCGCCCAGATCCTGCTGAAGGCCCTCACCAACTTGCCGCACACAGACTTCACCCTGTGCAAGTGCATGATCGACCAGGCACATCAAGAAGAACGGCCAATCCGACAGATTTTGTACCTCGGGGACCTGCTGGAGACCTGCCATTTCCAGGCCTTCT|GGACCTTCACGGCATGGTGCAACTCCCACCTGCGGAAGGCAGGCACACAGATCGAGAACATTGATGAGGACTTCCGAGACGGGCTCAAGCTCATGCTGCTCCTGGAGGTCATATCAGGGGAGCGGTTACCTAAGCCGGAGCG 16 1.0 0.957174602101315 0.700568097417645 Y Y 3.4210491438586 3.6659225983548303 3.4210491438586 0 0.992981220657277 0.0 Y 0.0033333333333333 N Y 9760 46301 ENSG00000178982 ENSG00000130402 + - 19 19 39127595 39222223 coding intron EIF3K ACTN4 39109735 39138289 + + 0.0 39116742 39191240 + - N - - N SA538 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 6 1.33843934227982 1.222890622083 1.33843934227982 1.222890622083 4 - - 0.9889860616279 HCT116-stranded 0.50 143218 GTCTTATTCACATATCCCAAGTCATCTCAGAAGTTGATGGTAACAGGATGACCTTGAGCCAAGAAGGAGCACAAGATTCCTTCCCTCTTCAGCAGAAGATCTTGGTTTGCTCTTTGATGCTCTTGATCAGGCAGTTGAAAATCAAAGAGGTCACTCTGGGGAAG|CATCACAGGACATGGCCCCCTCAGCCACCTAGCTGGGGCCCATCTAGGAGTGGCATCTTTTTTGGTGCCCTGAAGGCCAGCTCTGGACCTTCCCAGGAAAAGTGCCAGCTCACAGAACTGCTTGACCAAAGGACCGGCTCTTGAGACATCCCCCA 20 1.0 0.6819810713725699 0.401229256084622 Y Y 3.35038049755395 3.25360004855864 3.25360004855864 0 0.0 0.0 Y 0.0 N Y 2726 3584 ENSG00000094804 ENSG00000131759 + - 17 17 38459171 38513094 coding utr5p CDC6 RARA 38443885 38465444 + + 0.0 38457282 38487109 + - N - 0.104866714034217 N SA538 1 0.0 1.0 1 0 4 N Y 0.0 0.0 10 1.46361712249304 1.4539880624766397 1.46361712249304 1.4539880624766397 4 - 13.3 0.984687947413614 HCT116-stranded 0.50 143216 AAGCTAGAGAAAAATGTAAGCCACAGCTGTTGAACTTCCCACCTTATACCAGAAATCAGATAGTCACTATTTTGCAAGATCGACTTAATCAGGTATCTAGAGATCAGGTTCTGGACAATGCTGCAGTTCAATTCTGTGCCCGCAAAGTCTCTGCTGTTTCAGGAGATGTTCGCAAAGCACTGGATGTT|TGCAGCATCACAGGACATGGCCCCCTCAGCCACCTAGCTGGGGCCCATCTAGGAGTGGCATCTTTTTTGGTGCCCTGAAGGCCAGCTCTGGACCTTCCCAGGAAAAGTGCCAGCTCACAGAACTGCTTGACCAAAGGACCGGCTCTTGAGACATCCCCCA 30 0.8647025881490341 0.6173537987578249 0.7137550908160492 Y Y 3.55553920790569 3.2829255041685297 3.2829255041685297 2 0.0 0.0 Y 0.0 N Y 2726 3584 ENSG00000094804 ENSG00000131759 + - 17 17 38459171 38513094 coding intron CDC6 RARA 38443885 38465444 + + 0.0 38451708 38487109 + - N - 0.105028374007976 N SA538 1 0.0 1.0 1 0 4 N Y 0.0 0.0 13 1.8584085831655 1.5791658426898605 1.8584085831655 1.5791658426898605 4 - 10.2307692307692 0.99298193841871 HCT116-stranded 0.50 143217 AGTTGAAAATCAAAGAGGTCACTCTGGGGAAGTTATATGAAGCCTACAGTAAAGTCTGTCGCAAACAGCAGGTGGCGGCTGTGGACCAGTCAGAGTGTTTGTCACTTTCAGGGCTCTTGGAAGCCAGGGGCATTTTAGGATTAAAGAGAAACAAGGAAACCCGTTTGACAAAG|CATCACAGGACATGGCCCCCTCAGCCACCTAGCTGGGGCCCATCTAGGAGTGGCATCTTTTTTGGTGCCCTGAAGGCCAGCTCTGGACCTTCCCAGGAAAAGTGCCAGCTCACAGAACTGCTTGACCAAAGGACCGGCTCTTGAGACATCCCCC 35 1.0 0.6291658714250971 0.311620370464282 Y Y 3.0460044763065297 3.25360004855864 3.0460044763065297 0 0.0 0.0 Y 0.0 N Y 2726 3584 ENSG00000094804 ENSG00000131759 + - 17 17 38459171 38513094 coding utr5p CDC6 RARA 38443885 38465444 + + 0.0 38457860 38487109 + - N - 0.104866714034217 N SA538 1 0.0 1.0 1 0 4 N Y 0.0 0.0 11 1.67545644285387 1.52139148259145 1.67545644285387 1.52139148259145 4 - 12.0909090909091 0.9810214111352752 HCT116-stranded 0.50 630825 GCCATAGAAGAAACAGAAGGATTTGGACAAGAGTAACTTCTGAGAACTTGCACCATGAATGGGCAAGAACTTATTTGCAATGTTTGTCCTTCTCTGCCTGTTGCACATCTTGTAAAATTGGACAATGGCTCTTTAGAGAGTTATCTGAGT|GCAGAGGTGGAGGAGACACTGAAGCGACTGCAGAGCCAGAAGGGAGTGCAGGGAATCATCGTCGTGAACACAGAAGGCATTCCCATCAAGAGCACCATGGACAACCCCACCACCACCCAGTATGCCAGCCTCATGCACAGCTTCATCCTGAAGGCACGGAGCACCGTGCGTGACATCGACCCCCAGA 8 0.890271099678341 0.745164588195785 0.4295946683387 Y Y 3.56488607910057 3.22733394946506 3.22733394946506 0 0.0 0.0 Y 0.0 N N 1131 4937 ENSG00000078747 ENSG00000125971 + - 20 20 33099198 33128762 utr3p coding ITCH DYNLRB1 32951041 33104214 + + 0.0 33095713 33114073 + - N - - N SA538 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 7 1.38658464236182 1.50213336255864 1.50213336255864 1.38658464236182 4 - - 0.98513169876068 HCT116-stranded 0.50 1886 CTGCTTCAAGATAATATAAGCAAGGAAAACTGTGTTTTCAGAAGCTCACTGATTGGCATAGTTTGTGGTGTTTTCTATCCCAGTTCTTTGGCTTTTACTAAAAATGGACGCCTGGCAACCAAG|AATCTACTTGAAAATGGATCGGTTTATGTTGGATTAAATGCTGCTCTTTGTGGCCTCATAGCAAACAGTCTTTTTCGACGCATCTTGAATGTGACAAAGGCTCGCATAGCTGCTGGCTTACCAATGGCAGGGATACCTTTTCTTACAAC 17 0.0965814098967309 0.6289911841636079 0.6764271036882329 Y Y 3.48639814491089 3.25360004855864 3.25360004855864 1 0.0 0.00366300366300376 Y 0.00366300366300376 N Y 2190 1373 ENSG00000171204 ENSG00000171202 + - 11 11 85347580 85367591 coding coding TMEM126B TMEM126A 85339629 85359011 + + 0.0 85346822 85365107 + - N - - N SA538 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 11 1.03030942175497 1.8198923430999 1.8198923430999 1.03030942175497 4 - - 0.952433022816592 HCT116-stranded 0.50 483466 AGCAGTACTTCCAGAGGACCTTGGCAGGAACTGTGCCCGGCTGCTGCTGGAGGAAATCTACAGGGGTGGATGCGTAGACTCGACCAACCAAAGCCTGGCGCTACTACTCATGACCCTTGGACAGCAGGATGTTTCCAAAGTCCTGCTAGGCCCTCTCTCTCCCTACAC|GTTGCTTTCCATCTCTGGGAAATCTACTCTTACCAGAACTAGAGACCGTTTCCAAGGAAAAAAGGAGAAAAAAAGAAGATGCCACTTTGAAAGACATCGTTGCTTCATCCTTCAAATAGCCACATGGGGAATATGCAGCAATTTCCTTA 12 1.0 0.340509780298514 0.16832773310275398 Y Y 3.27763636413971 3.47445076784292 3.27763636413971 0 0.0 0.0 Y 0.0 N N 1717 305 ENSG00000120158 ENSG00000243754 + - 9 9 4861064 4885917 coding downstream RCL1 RP11-125K10.4 4792869 4860454 + + 0.0 4849550 4905157 + - N - - N SA538 1 0.0 1.0 1 0 1 N Y 0.0 0.0 6 1.2517778021322 1.58879490270626 1.58879490270626 1.2517778021322 4 - - 0.9515683160050048 HCT116-stranded 0.50 374078 CCAGTGACATCAAATGAGGAAGATTCATATCTCCTGATGCTCCATGTGTAAGAATTATTCCATATGTTAAGCTCTTGTTAGGTACCAAACAAACAGCATCTAGTAATTTATTTCCAAAAGGTATTTTTAATTTA|ACCTCTTCATCGTGATCTTTCGCCCATTTAAGTTTTTCTAGCAGATCGCTCAGGTTGCTCTTAACTGGAATGTAGTGTTTCCAGGGCTGCAGCTCATTGTAAAAATGTTCATAGTAGATGGAATCCTGCTTCAGCACAACACTGTCACCAACTAGCAAATATGGCAG 11 1.0 0.423930300411914 0.429265408746721 Y Y 2.99831614787411 3.3289582682151098 2.99831614787411 1 0.0 0.0 Y 0.0 N Y 1038 262 ENSG00000151287 ENSG00000134901 - + 13 13 103426161 103451357 coding intron TEX30 KDELC1 103418340 103436631 - - 0.0 103421891 103441362 + - N 10.2767124905845 0.248676993540868 N SA538 2 0.0 1.33333333333333 1 2 1 Y Y 0.0 0.0 6 1.2325196820993998 1.48287524252584 1.48287524252584 1.2325196820993998 4 16.1666666666667 0.833333333333333 0.961534190082276 HCT116-stranded 0.50 74679 CTCCAGAAGGTTCAGGAATACTGCTACGACAACATCCATTTCATGAAAGCCTTTCAGAAGATTGTGGTTCTCTTTTATAAAGCTGATGTTCTGAGCGAAGAAGCAATACTGAAATGGTATAAGGAAGCACATGTTGCTAAAGGCAAAAGTGTTTTTCTTGACCAGATGAAGAAATTTGTTGAGTGGTTACAAAATGCAGAAGAAG|TTGGTTAGTCTGCTGCTAATTGGAATTGCTGCGTGGGGCATTGGCTTCGGGCTGATTTCCAGTCTCCGAGTGGTCGGCGTGGTCATTGCAGTGGGCATCTTCTTGTTCCTGATTGCTTTAGTGGGTCTGATTGGAGCTGTAAAACATCATCAGGTGTTGCTAT 6 0.107911435860985 0.6918440027446501 0.783079173324124 Y Y 3.1710543832029 3.4571608175836404 3.1710543832029 0 0.0 0.0 Y 0.0 N Y 9337 2500 ENSG00000136261 ENSG00000106537 + - 7 7 16746148 16824161 coding coding BZW2 TSPAN13 16685756 16793160 + + 0.0 16744294 16815836 + - N - - N SA538 1 0.0 1.0 1 0 2 N Y 0.0 0.0 8 1.67545644285387 1.49250430254224 1.67545644285387 1.49250430254224 4 - - 0.933002386685185 HCT116-stranded 0.50 74566 TTTCTCAGGAATGCCCGATCAAGGAGGTGGTGCTTTATGTCAAAGAAGAAATGAAGAGGAATGATCTTCCAGAAACAGCAGTGATTGGTCTTCTGTGGACATGTATAATGAACGCTGTTGAGTGGAACAAGAAGGAAGAACTTGTTGCAGAGCAGGCTCTGAAGCACCTGAAG|TTGGTTAGTCTGCTGCTAATTGGAATTGCTGCGTGGGGCATTGGCTTCGGGCTGATTTCCAGTCTCCGAGTGGTCGGCGTGGTCATTGCAGTGGGCATCTTCTTGTTCCTGATTGCTTTAGTGGGTCTGATTGGAGCTGTAAAACATCATCAGGTGTTG 52 1.0 0.957186208031203 0.6908392340806961 Y Y 3.4937534244795 3.4571608175836404 3.4571608175836404 0 0.0 0.0 Y 0.0 N Y 9337 2500 ENSG00000136261 ENSG00000106537 + - 7 7 16746148 16824161 coding coding BZW2 TSPAN13 16685756 16793160 + + 0.0 16736686 16815836 + - N - 0.10754387173116 N SA538 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 26 1.68508550287027 1.5791658426898605 1.68508550287027 1.5791658426898605 4 - 3.23076923076923 0.9889860616279 HCT116-stranded 0.50 744663 GGGAGCTGCCGCTCACGGTCGTGGCCTACGAAGACCTCTTTGGGGGCTGGACGATGGACGCCGTGGCCCGCAGCACAGCCGGCTCCGGCCGCAGCCGCTCCTGCTGCACCTTCTGTGGAGTGCTGCGGCGCCGGGCGCTGGAGGAAGGGGCGCGCCGCGTGGGAGCCACGCACATCGTGACAG|CCAGGTACCCCGCCTCTCTGCAATGCGTGAACATCAACATCTCCCCGGATGAGGTGTGCCAGAAGGCCTATCCTAGAACCATCACGCCTGGCATGGTCTGTGCAGGAGTTCCCCAGGGCGGGAAGGACTCTTGTCAGGGTGACTCTGGGG 14 1.0 0.8719287705772959 0.8790730864982859 Y Y 3.37232774565629 3.69106234172268 3.37232774565629 1 0.0 0.0 Y 0.009640718562874179 N Y 1157 174 ENSG00000142544 ENSG00000129437 + - 19 19 51611647 51587502 coding coding CTU1 KLK14 51600863 51580574 - - 0.0 51607319 51582208 - + N - - N SA538 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 8 1.52139148259145 1.27103592216501 1.52139148259145 1.27103592216501 4 - - 0.9858463997871908 HCT116-stranded 0.50 636648 CCGCAGAGATGCCCCTGCTGGCCGCAAAGTGGGTCTCATTGCTGCCCGCCGGACTGGACGTCTCCGGGGAACCAAGACTGTGCAGGAGAAAGAGAACTAGTGCTGAGGGCCTCAATAAAG|CCAAATAGTTGCATCACATGTATCTAATCCGAGAGTCTCATGCTTCTGGTAGCTCCTCAGTGACCAGCTCCTGCTCACTGCCCTCAGAAAGCCCAACCCTCAGGCAATGGCGGCCTTGTTCCTGTCTGCCCCACCCCAGGCCGAGGTGACCTTCGAGGACGT 32 1.0 0.7213742984928628 0.494830645875786 Y Y 3.35253057547976 3.63465898428114 3.35253057547976 2 0.0 0.00353356890459355 Y 0.00353356890459355 N Y 95833 1279 ENSG00000161016 ENSG00000196378 + - 8 8 146017972 146012730 utr3p utr5p RPL8 ZNF34 146015150 145997611 - - 0.0 146015170 146005665 - + N - - N SA538 3 0.0 1.85714285714286 1 4 1 Y Y 0.0 0.0 7 0.914760701558148 1.30955216223061 1.30955216223061 0.914760701558148 4 - - 0.9756647371743508 HCT116-stranded 0.50 702236 ACTGTTCAGAAAACAACAAAGAAGAGACAATTCCGGATGTGGATGTAGAAGAGGCAGTTCTGGGGCAGTATACTGAAGAACCTCTAAGTCAAGAGCCATCTGTAGATGCTGGTGTGGATTGTTCATCAATTGGCGGGGTTCCATTTTTCCAG|AGCTTGTCTCTGTCCTTGGAACACAGAAGAGCACATTGAATTCATCAGGCCATGGGATGAGAATGATGACGGTGGAGATGGCACAACACTGGAGCTGACCCACAGAGGGATCAATGATTCCCAAATAACCCTTCACTGATAGTTTCCAGGGGCAAGGCACTACCTGAAATTGTATGCAATCTTC 9 1.0 0.712577378667414 0.6817867148800871 N Y 3.2823030095525803 3.66951632120446 3.2823030095525803 2 0.0 0.0 Y 0.0 N N 3093 1178 ENSG00000138160 ENSG00000152804 + - 10 10 94415150 94455403 coding upstream KIF11 HHEX 94353043 94447945 + + 0.0 94410274 94443354 + - N - - N SA538 1 0.0 1.0 1 0 1 N N 0.0 0.0 7 1.44435900246023 1.8102632830834904 1.8102632830834904 1.44435900246023 4 - - 0.99298193841871 HCT116-stranded 0.50 406448 GTGGCTGCCGGTGTGTGCCCAGTCTGGCTTCGGCTCCCAGGGGTCGTGGGCGGGTGGGAGCCCTCGCTGGGCCATCTCCTCGGTACAGGTCAGCTGCCGCCGGCGGAGCTCCTCATCTGTCTCCTGGTCCACCACCAGCAGCCGAGTCTGCCCCTCCACAGCCTTGATCCTTTGCACCACC|TGGCCAGCTCCGCTGAAGTCCAGGGACTCCGGTTCCAGCGCAGGCTCTGGGGCGCGCGGGCTCCGGGGCGCACGGACGGGGATCCCTGCCTGGGAGCTCCTGCGTCGCGTCTCCCACAGCTCCTGAACCCACGAGG 20 1.0 0.8300506949116581 0.7357898592359 Y Y 3.34718800228844 3.59528445727371 3.34718800228844 3 0.992670181280059 0.0 Y 0.0104744728079912 N Y 2522 12914 ENSG00000065054 ENSG00000183971 - + 16 16 2089027 2070756 coding coding SLC9A3R2 NPW 2075357 2059927 + + 0.0 2079583 2070313 - + N - 0.581034896880223 N SA538 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 7 1.54064960262425 1.2421487421158002 1.54064960262425 1.2421487421158002 4 - 633.571428571429 0.993693434965754 HCT116-stranded 0.50 74391 GGCATAGGTCCTTGGAACTTGGTCGATTGAAATGTAAGTGCACTCAACCTTGCTCTCCGGTTCGTGATCAGCAGCCGAGAAATACACAACCTCTTGCACTTCATCTCTGGGCCGGGCTGAATTTTTCCCAAATACCACCAGACCATCCTTAGCACGTGGAGGGAAGGCAACAAAACAGTAACTTGGAGGAGCTGCAGCCATC|GTGGAGTGAAATAAGGAGCCGTCCTTTTCTAAGTAGCCTTCATAGTGGACCAACATCAAATCCCCTCCTTTGGTCTTGCGATGGCAGATGAATGGCTTCTGGAGAACTTCAATTTTCACTTCTGGTTCAGGGATCAAAGCCCCAATCAAAGAAGTGACGAACAGAGTCAAGACCGCGTTCCACAAG 18 0.5230495628459321 0.675472858845196 0.404323130186481 Y Y 3.58337693299909 3.57489529770476 3.57489529770476 1 0.994637476849932 0.0 Y 0.0 N Y 8630 913 ENSG00000136193 ENSG00000106080 - + 7 7 30029905 30066300 coding coding SCRN1 FKBP14 29959719 30050203 - - 0.0 30008684 30065928 + - N - 0.512768021613181 N SA538 1 0.0 1.0 1 0 1 N Y 0.0 0.0 7 1.88729576321471 1.56953678267345 1.88729576321471 1.56953678267345 4 - 5.85714285714286 0.948116124384508 HCT116-stranded 0.50 435723 CATGGGCTCCTGCTCCTGACACATGGGCTCCTGCTCCTGACCAAACTGAGCAAGACCAGAATAGACTGTCACAGAACTCTGTAAATCTGTCTCCCAGCAGTCACGCAAACAACTTATCAGTAGTGACTTACAGTA|AGACACAGCCGCCAGCCCAAACAGCAGCGGCATGGGCAGCGCCAGCCCGGGTCTGAGCAGCGTATCCCCCAGCCACCTCCTGCTGCCCCCCGACACGGTGTCGCGGACAGGCTTGGAGAAGGCGGCAGCGGGGGCAGTGGGTCTC 7 1.0 0.975905041275492 0.0642110336764553 N Y 3.49015970162987 2.9039725607791604 2.9039725607791604 0 0.992618953473046 0.0 Y 0.0 N Y 3595 186 ENSG00000196821 ENSG00000124664 + - 6 6 34664636 34524110 coding intron C6orf106 SPDEF 34555065 34505579 - - 0.0 34574332 34512261 - + N - 14.1497451045786 N SA538 2 0.0 1.6 1 3 1 N N 0.0 0.0 5 0.962906001640156 1.08808378185338 1.08808378185338 0.962906001640156 4 - 0 0.9218766782284548 HCT116-stranded 0.50 405919 GCGGCGGGCGCAGACAGCGGCGGGCGCAGGACGTGCACTATGGCTCGGGGCTCGCTGCGCCGGTTGCTGCGGCTCCTCGTGCTGGGGCTCTGGCTGGCGTTGCTGCGCTCCGTGGCCGGGGAGCAAGCGCCAG|ACAGAGGTGTTCCAGGCCTTGCAGCGGCTCCATATGACCATCTTCTCCCAGAGCGTCTCACCATGTGGGAAGTTTCTGGCGGCTGGCAACAATTACGGGCAGATTGCCATCTTCAGGTACCCTCTGCCGCTGTCCACCCATT 15 1.0 0.304472704515868 0.667859582139766 Y Y 3.35823029066252 3.76951977068882 3.35823029066252 0 0.0 0.0 Y 0.0 N Y 5212 2161 ENSG00000006327 ENSG00000131652 + - 16 16 3072384 3077756 coding coding TNFRSF12A THOC6 3068446 3074028 + + 0.0 3070492 3075709 + - N 0.338985635008984 0.711579215464653 N SA538 1 0.007692307692307691 1.0 1 0 1 Y Y 0.007692307692307691 0.0 11 1.16511626198459 1.3480684022962202 1.3480684022962202 1.16511626198459 4 50.0909090909091 18.5454545454545 0.974679460297806 HCT116-stranded 0.50 456181 TATGATCCTCCAACTCTCCTGGAATTAGCTGCACGGACCATTAAGATTCGAAATATTTCCTACACTCCCTATGATCTTCCTGGAAATCTTCTTAGATACTTGGGTTCAGCCAGCAATTGCCCAAACCCAAAGTGTG|GAGGAACCAGAGTGAGGGTACTCGAACAGTGACTGCCATCTGGTGGTTAACCAGAATCATCACCTTGTGTAGCCTGATGGTTACTAAGATGTCCACTCTTGACTCACATGGCATGCACTCGCAGCAGGGGACCAGTTGAAGGATGTCTGACTTTGGAGGGTCACCAGTTGAAGGATGTCTGATGAAGGAGCCTAGCGAAATAACCCTTT 11 0.547078964383628 0.8068874517565658 0.462805596131685 N Y 3.32217205009997 3.6272104187567 3.32217205009997 0 0.0 0.0 Y 0.0 N Y 7023 237 ENSG00000163428 ENSG00000175697 + - 3 3 120068186 120003941 coding utr5p LRRC58 GPR156 120043356 119883492 - - 0.0 120053709 119963325 - + N - - N SA538 1 0.0 1.0 1 0 1 N N 0.0 0.0 7 1.32881028226342 1.70434362290308 1.70434362290308 1.32881028226342 4 - - 0.965703032115815 HCT116-stranded 0.50 636529 ATATCTGCTGTGCCCAGGTGGTTGTCGGGGGCAGGGGACAGCAGCACAAACTCTGCTTCCTGGCATGATGTCCAGCTCCTCACTCTTCCAACCTTCCCTAAGGGGAGTTCCCTCTTGGAGGCCTTTGGTATCCTTTCCTGTCAGCTGACTCCCAT|CTTCAGAATCCCAGAGTTGAATAGTCACATTTGTTTCTCCTTCTTCATCAGTCACCAGATTTATGGTAAAGTTTGTAGCATCTGATGAGATCTTCTTGGCCACATTCACCATTTGTAGTATTTTAGGATCTTCTATTTT 11 0.7682918149146309 0.478650462224758 0.6857354540095961 Y Y 3.48487056160104 3.39487633072086 3.39487633072086 0 0.992830142665529 0.0 Y 0.0 N N 6036 309 ENSG00000133731 ENSG00000253598 - + 8 8 82598928 82608409 upstream coding IMPA1 SLC10A5 82570196 82605842 - - 0.0 82602027 82606883 + - N - 0.243073327217579 N SA538 2 0.0 1.8333333333333304 1 5 2 N Y 0.0 0.0 6 1.00142224170576 1.14585814195179 1.14585814195179 1.00142224170576 4 - 1 0.960183591517664 HCT116-stranded 0.50 636531 CCTTACCGAAAGTGAAGTGAAAATCTGCCGGTGCACAGGGAAGTCTTAGTGTTCAGGCTCGATTATAGTGGGGCTGGAAACTGGTCTCACAAATCCAAAGGATCTTTTCTCTGATG|CTTCAGAATCCCAGAGTTGAATAGTCACATTTGTTTCTCCTTCTTCATCAGTCACCAGATTTATGGTAAAGTTTGTAGCATCTGATGAGATCTTCTTGGCCACATTCACCATTTGTAGTATTTTAGGATCTTCTATTTTCACAAAGAGGTGGCTGGAATTAGGCCGTTTATTTTCGTA 20 0.37765329095713707 0.7511889943972829 0.916347068318662 Y Y 3.28449294027173 3.39487633072086 3.28449294027173 0 0.991408533021625 0.0 Y 0.0 N N 6036 309 ENSG00000133731 ENSG00000253598 - + 8 8 82598928 82608409 upstream coding IMPA1 SLC10A5 82570196 82605842 - - 0.0 82601751 82606883 + - N - 0.243073327217579 N SA538 2 0.0 1.625 1 5 2 N Y 0.0 0.0 8 1.2132615620666 1.69471456288667 1.69471456288667 1.2132615620666 4 - 0.75 0.9228245945764773 HCT116-stranded 0.50 142246 TACAGGAGAGCCGACCATTTTCAGTTGACTTTTTCAGGAAAATGATTCAGTTTGAAAAGGAGCAAGAATCCTGCAATATGGCGAACATAAGAGAATATTATGAGAGAGCTTTGAGAGAGTTTGGATCCGCAGATTCTG|CCCGTGGAACACAGAGCATTCCTAATGACAGTCCTGCCCGGGGTGAGGGCACCCATTCTGAAGAGGAAGGCTTTGCCATGGATGAGGAGGACTCTGATGGAGAACTGAATACCTGGGAGCTGTCAGAAGGGACAAACTGTCCACCCAAGGAAC 14 1.0 0.382538150380559 0.787738898125343 Y Y 3.29227237536341 3.7574444125448494 3.29227237536341 1 0.0 0.0 Y 0.0 N Y 1760 3110 ENSG00000108651 ENSG00000172301 + - 17 17 30228784 30186356 coding coding UTP6 C17orf79 30187923 30178883 - - 0.0 30192385 30180049 - + N - 7.75111161151191 N SA538 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 7 1.2132615620666 1.16511626198459 1.2132615620666 1.16511626198459 4 - 63 0.9834575253102672 HCT116-stranded 0.50 374236 ACTGTAAGGTAACCCTTCAGTGTCAGTGAAGAACTGGTCTACGACTGAGGCACTGTCTCGTCTATACTTTTTATGCTCTGGAATTATAGGAACTGGAGGAAGCTGAGGTGTCAGATACTTCTCCATTTCACATCTTGT|AAAGAGTGTTGGTTTAGGTGTAAATATATTGTCTTCATGCTCTTTAGGCACATTCAAAGTCTTTGATTTCTGATTTTCTGTCACATGTTTTGGTTCTGTTTTAGTGAGAAGTAAGCTGTTCTCAGAATGTTTACTATGCATCTTAA 10 0.925852599589377 0.7057790687920942 0.0955860857892327 N Y 3.65913638023969 3.29231222815676 3.29231222815676 0 0.0 0.0 Y 0.0 N Y 7031 743 ENSG00000102554 ENSG00000083535 - + 13 13 73651676 73590591 coding coding KLF5 PIBF1 73629114 73356197 + + 0.0 73635999 73573133 - + N - 3.33249971518988 N SA538 1 0.0 1.0 1 0 1 N N 0.0 0.0 6 1.08808378185338 1.3480684022962202 1.3480684022962202 1.08808378185338 4 - 5 0.979549885629761 HCT116-stranded 0.50 74744 CAAGATTGAAGGAGATCAAGGAAGAGCTTCTGCATTCTGAGAAGCTTAAGACATACTTTGAAGACAACCCTAGGGACCTCCAGCTGCTGCGGCATGACCTACCTTTGCACCCCGCAGTGGTGAAGCCCCACCTGGGCCATGTTCCTGACTACCTGG|GCCCAGAGTGAGCCTTACACAACCATCCACCAGCCTGGCTACTGCGCCTTCTATGACGAATGTGGGAAGAACCCAGAGCTGTCTGGAAGCCTCATGACACTCTCCAACGTGTCCTGCCTGTCCAACACGCCGGCCCGCAAGATC 13 1.0 0.7935769835765479 0.16793173998332694 Y Y 3.49424793801946 3.5146370975884103 3.49424793801946 0 0.0 0.0 Y 0.0102436323366556 N Y 12886 253 ENSG00000136271 ENSG00000015520 + - 7 7 44614650 44580914 coding coding DDX56 NPC1L1 44605016 44552134 - - 0.0 44607717 44579941 - + N - - N SA538 1 0.0 1.0 1 0 1 N Y 0.0 0.0 5 1.41547182241103 0.934018821590951 1.41547182241103 0.934018821590951 4 - - 0.987044461630012 HCT116-stranded 0.50 142689 AGAATATATCAGCCTTCGGCTCATCATATCAGAGCTGAGGAATCAATAT|GGCTGAAAAACTGGGTGGTAGCTGAAGACGTGGTGTTTAAACCTGTGGCTGCCCCCTGGAACCCGGAGCACTGGCTACAGCGCCCACAGCTGACTCGGCAGGTCCTGGGAAAGGAGGACCTGACAGCTTTTTCCTTGGGAAGCCCCCT 17 0.00247004829234495 0.993236727650634 0.9114947083319028 Y Y 3.5676145660496603 3.18871505582277 3.18871505582277 0 0.0 0.0 Y 0.0 N Y 18679 2838 ENSG00000131467 ENSG00000131480 + - 17 17 40995523 41002724 coding coding PSME3 AOC2 40976402 40996617 + + 0.0 40991397 41001103 + - N - 0.455377264225165 N SA538 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 6 1.44435900246023 1.2325196820993998 1.44435900246023 1.2325196820993998 4 - 25.1666666666667 0.930028419486934 HCT116-stranded 0.50 142685 TCTTATCTGGACCAGATTTCTAGATATTATATTACAAGAGCCAAATTGGTTTCTAAAATAGCTAAATATCCCCATGTGGAGGACTATCGCCGCACCGTGACAGAGATTGATGAGAAAGAATATATCAGCCTTCGGCTCATCATATCAGAGCTGAGGAATCAATAT|GGCTGAAAAACTGGGTGGTAGCTGAAGACGTGGTGTTTAAACCTGTGGCTGCCCCCTGGAACCCGGAGCACTGGCTACAGCGCCCACAGCTGACTCGGCAGGTCCTGGGAAAGGAGGACCTGACAGCTTTTTCCTTGGGAAGCCCCCTACCCCGCTACCTCTACCTGGCTAGCAACCAGACTAATGCGTGGG 28 1.0 0.37125748628942495 0.648664053305568 Y Y 3.5676145660496603 3.18871505582277 3.18871505582277 0 0.0 0.0 Y 0.0 N Y 18679 2838 ENSG00000131467 ENSG00000131480 + - 17 17 40995523 41002724 coding coding PSME3 AOC2 40976402 40996617 + + 0.0 40991397 41001103 + - N - 0.455377264225165 N SA538 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 13 1.58879490270626 1.71397268291948 1.71397268291948 1.58879490270626 4 - 11.6153846153846 0.9862286337140892 HCT116-stranded 0.50 446695 TAACAAAGCTGATGTAATTTTAAAATACAATGCAGACGAAGCTAGAAGTCTGAAGGCATACGGCGAGCTTCCAGAGCATGCTAAAATCAATGAAACTGATACATTTGGTCCTGGAGATGATGATGAAATTCAGTTTGATGACATTGGAGATGATGATGAAGATATTGATGAC|GCATGGAGGGATTTTTGAAATCAGATGAGAGGCAGAGATTGGCCAAAGAAAGACGAGAAGAAAGAGAAAAATGTCTGGCTGCTCGGGAGCAACAGATCCTGGAGAAACAGAAAAGAGCCAGGCTGCAGTACGAAAAGCAAATGGAGGAGCGATGGCGA 19 0.808575470725528 0.761051433148827 0.20230480982920104 Y Y 2.84284912476227 2.89359261981439 2.84284912476227 1 0.0 0.0 Y 0.0 N Y 20363 1022 ENSG00000173674 ENSG00000184368 + - X X 20159962 20135035 coding coding EIF1AX MAP7D2 20142636 20024831 - - 0.0 20148634 20082923 - + N - - N SA538 2 0.0 2.0 2 13 1 N Y 0.0 0.0 13 1.55027866264065 1.53102054260785 1.55027866264065 1.53102054260785 4 - - 0.902825339941015 HCT116-stranded 0.50 458206 CGGCTGTGAAGGACCTGTTTGGGGAGGTTGATGCCGCCTTACCTTTGGACATCCTAACCTATGAAGAGAAGACCTTGTCAGCCATCTTGAGAATATGTAGCAGTGGTCTTGTCAAATTGTGGAGCTCTTTGACCCTGTTAGGATCCTATAAAGGCAAAAAATGTGCTTTCCGGGTGATTCAG|ATTGCAGGCCTAAGTCTACCTCTTCCTCCCAAAAAATTGATTGGTAACATGGATCGTGAATTCATAGCTGAAAGGCAGAAAGGTCTTCAGAACT 2 0.269615896001416 0.856025908895774 0.9578116485187907 Y Y 3.4921512932561405 3.5361526128830896 3.4921512932561405 0 0.0 0.0 Y 0.0 N Y 342 1626 ENSG00000255154 ENSG00000168297 + - 3 3 58305920 58411748 utr5p coding RP11-80H18.3 PXK 58291974 58318607 + + 0.0 58302720 58368241 + - N - - N SA538 1 0.0 1.0 1 0 2 N Y 0.0 0.0 5 1.09771284186978 1.8487795231491 1.8487795231491 1.09771284186978 4 - - 0.970519247417706 HCT116-stranded 0.50 458204 ATCCGCCTGGGCGTCACGCTTCGTGGGGCGGGACGAGGAGAAGCCAAACGTAAAGACACCAGGAGTTTCTCGGGCCCAGCTGTGGCTGCTGCCGGGGAGCCCCAAGCCTTGGCGGGTCCTTGCGGCGAATAGGAGTCTGGTCAGGCGTCAGGCTAGTCCGACGAAGAGTG|GATTGCAGGCCTAAGTCTACCTCTTCCTCCCAAAAAATTGATTGGTAACATGGATCGTGAATTCATAGCTGAAAGGCAGAAAGGTCTTCAGAACTATCTCAAC 4 1.0 0.751331198525002 0.798873744130318 Y Y 3.54140190011857 3.5361526128830896 3.5361526128830896 2 0.0 0.0 Y 0.0 N Y 342 1626 ENSG00000255154 ENSG00000168297 + - 3 3 58305920 58411748 utr5p coding RP11-80H18.3 PXK 58291974 58318607 + + 0.0 58292144 58368241 + - N - - N SA538 1 0.0 1.0 1 0 2 N Y 0.0 0.0 5 0.8473572814433371 1.72360174293588 1.72360174293588 0.8473572814433371 4 - - 0.992655825383883 HCT116-stranded 0.50 636793 TTTTGGTAAATGGCTGCGGTGAAGTCAATGTGCAAATGCTGATCAGTTTTACCTCTTTCAATGATGAATCAGGAGAAAATGCTGAGAAGCTTCTGCAGTTCAAGCGTTGGTTCTGGTCAATAGTAGAGAAGATGAGCATGACAGAACGACAAGATCTT|AGATCATCTTCAGACACCAACGAAAGTGAAATAAAGTCAAATGAAGAGCCACTCCTAAGAAAGAGTTCTCGCCGGTTTGTCATCTTTCCAATCCAGTACCCTGATATTTGGAAAATGTATAAACAGGCACAGGCTTCCTTCTGGACA 5 1.0 0.699523252577625 0.6201589894755379 Y Y 3.4094724891512205 3.37295958784206 3.37295958784206 0 0.0 0.0 Y 0.0 N Y 6576 5609 ENSG00000104517 ENSG00000048392 + - 8 8 103425069 103251346 coding coding UBR5 RRM2B 103264501 103216730 - - 0.0 103269860 103244532 - + N - 14.3895585807487 N SA538 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 5 1.53102054260785 0.885873521508944 1.53102054260785 0.885873521508944 4 - 23 0.989456436733844 HCT116-stranded 0.50 482995 CGTGCCAGTTTATAAAGGGAGAGAGCAAGCAGCGAGTCTTGAAGCTCTGTTTGGTGCTTTGGATCCATTTCCATCGGTCCTTACAGCCGCTCGTCAGACTCCAGCAGCCAAGATGGTGAAGCAGATCGAGAGC|AAGGAGGAAACACACCTGCTCCTGCAGAATCGATGGTCAATGCTGTTTGGATTAACAAGGAGAGAAGAAGCTCACTGTCCCTGGAAGAGGCAGATTCTGAGGTGGAGGGGAGGCTGGAGGAGGCTGCCCAGGGCTGCCTTCAGGCCCCCAAGTCTCCATGGC 4 0.96059767585786 0.7797824476317979 0.7652776385896508 Y Y 3.44247137319745 3.6491271616355 3.44247137319745 0 0.0 0.0 Y 0.0 N Y 31997 1314 ENSG00000136810 ENSG00000188959 + - 9 9 113018920 112970469 coding coding TXN C9orf152 113006091 112952328 - - 0.0 113018692 112963754 - + N - - N SA538 1 0.0 1.0 1 0 1 N Y 0.0 0.0 5 1.11697096190258 1.49250430254224 1.49250430254224 1.11697096190258 4 - - 0.9900705059897892 HCT116-stranded 0.50 648363 TGCTTGCAATGAAATATTCCTGATGCCTGCGACAGTTTTTATGCTTTTTAG|GATGTTTAGCAGCATCTCCAGCCTCAACCCACTCGATGCCAGTAGTATCCAGTTGTGACAGCTAAAAATGTCTCCAGATATTGCCAACAGTTGTCCCAGGATGAGAACCACTGCTGCAAAGGTCACACGATGTGGTTGGGCAGGGTGAGTATGG 16 0.0330238021637943 0.5039902443462461 0.833087952216131 Y Y 3.3802403194971604 3.5816815158199 3.3802403194971604 0 0.0 0.0 Y 0.0 N N 5225 4496 ENSG00000109133 ENSG00000182308 + - 4 4 41962589 41988476 coding upstream TMEM33 DCAF4L1 41937137 41983713 + + 0.0 41946943 41980151 + - N - - N SA538 1 0.813084112149533 1.0 1 0 3 N Y 0.0 0.813084112149533 6 1.2132615620666 1.03030942175497 1.2132615620666 1.03030942175497 4 - - 0.9191065044605948 HCT116-stranded 0.50 612543 CAAAGGCTTTCTGTCCGATTTCCGTTTCAGGACAGATGAAGTGGAAGGCCCAGGACTGTCTTCCTCCTGGGGCTTCTTTGCATTTCCTTTGTAACTTTTTCCTTCTTGCATGCTGTCCCACATTTCAATCTTCTGTCTCCTTTTTTCTTCTTCAAG|CCCGGAGGTCCAGCTCCCGGTCGCGCACCGCGTTGGTGTACTGCGCCGCCTGCTCGATCAGCTCCGCCGTCAGCTTGACCATCCTGCAGCCTCCCGTTCCCCCGCGCTGTGGAAAGCCCGTGGCCTCCCGCCAGCGAGACGTCCCAGCG 133 1.0 0.878811276322822 0.446305219415795 Y Y 2.8673799538833 3.4278353619737403 2.8673799538833 0 0.0 0.0 Y 0.0 N Y 3469 3121 ENSG00000131871 ENSG00000131876 - + 15 15 101817705 101835487 coding coding VIMP SNRPA1 101811022 101821715 - - 0.0 101814886 101835302 + - N - 0.540650024577006 N SA538 3 0.0 2.45544554455446 1 75 1 N Y 0.0 0.0 101 1.52139148259145 1.46361712249304 1.52139148259145 1.46361712249304 4 - 4.84158415841584 0.914604140903471 HCT116-stranded 0.50 2195 GCACAAAATCGTCCATGCGGCTGACCCGGAGCTGGTATGTGGTGTTGACTGGTGACAGGGTGGACACATCCACGTAGAAGAACTGAATCTCCGACTCATTCTTGGTGGGGGGCTGACACAGGGTTCGTTCCACTTTTTGGTAGAGGTACTTGCGCTGAA|ACTGAAGTAGAGGGTCCGTGCGGGCCCCAAGCGGCTGAGGCGTCGGCGGGTGGCGCGTCGGTCGCTCGCTCGGTCCCGTCGGTCCCGCTCCGGCGCGTCCCTCCTCCGGCCCCAGCACCAGCAGCAGCTCCTCCACTT 5 1.0 0.365020918985766 0.28654834229646603 Y Y 3.58064844605001 3.45872825368684 3.45872825368684 4 0.0 0.0 Y 0.0 N Y 1546 22115 ENSG00000149577 ENSG00000168092 - + 11 11 117068160 117047610 coding intron SIDT2 PAFAH1B2 117049449 117014983 + + 0.0 117052523 117015134 - + N - 1.21372914732486 N SA538 1 0.0 1.0 1 0 1 N Y 0.0 0.0 10 1.54064960262425 1.0206803617385698 1.54064960262425 1.0206803617385698 4 - 102.2 0.969055930287797 HCT116-stranded 0.50 767515 CTTATCTACACATGGGGGACTGAAGAGTTCGAGAGATCCAAGAGGAAGAATCCAGCTGCCTATGAAAATGACAAATGAGCAACGCATCCGGATGACGGTTCCCTGTCTCTGAAAGACCTTTCTCTGGAAGAGGAGTCTGCATTGTAGTGTCTCAAAGACACAATAAACTTCCTATGGTCTGCACTGTTGTGATATTACATTTTT|ATAGATGGCTCCCCAATACCAGAAGTGAGTTCGGCAAAGAGAAGGCCACGGAGAATGACCCCATTTTGGAGAGGGGTTTCCCTCAGGCCTATTGGAGCCTCCTGCCGGGATGATTCTGAGTGTATCACAAGGCTATGCAGAAAAAGACGC 48 1.0 0.994859775087302 0.35553704253015994 Y Y 3.4048855493250496 3.716171579866991 3.4048855493250496 0 0.9933521126760558 0.0 Y 0.627718309859155 N N 8854 416 ENSG00000164405 ENSG00000164406 + - 5 5 132203723 132210738 utr3p coding UQCRQ LEAP2 132202252 132208014 + + 0.0 132203400 132209642 + - N - - N SA538 2 0.0 1.04347826086957 1 1 2 Y Y 0.0 0.0 23 1.96432824334592 1.46361712249304 1.96432824334592 1.46361712249304 4 - - 0.9889860616279 HCT116-stranded CGHSA0756 0.50 744595 CCTCTGTCCCAGCCTCCGGGGCCCACCAGCCCCCCCAGACCACAGAAGGGGAGAAGAGCCCAGAGCCCTTGGGGCTTCCCCAAAGCCAG|AGCGCCCAGATGTCTGCAGGTGGCTGAGCCCCTTCATCCTCTCCTGCTGCGTGTACTTCTGCCTCTGGATTCCCGAGGACCAGCTGTCCTGGTTCGCTGCCCTGGTCAAGTGCCTGCCCGTCCTCTGCCTGGCTGGGTTCCTGTGGGTCATGTCCCCAA 3 0.184025084103322 0.7567479598274008 0.9604452703733912 Y Y 2.9982762950807595 3.4471914517728104 2.9982762950807595 0 0.0 0.0 Y 0.0 N Y 8419 659 ENSG00000105063 ENSG00000180089 + - 19 19 55770363 55741647 coding intron PPP6R1 TMEM86B 55741148 55738007 - - 0.0 55742142 55739805 - + N - 3.96010399048248 N SA538 1 0.0 1.0 1 0 1 N Y 0.0 0.0 5 1.2517778021322 1.15548720196819 1.2517778021322 1.15548720196819 4 - 3.4 0.9532415617989548 HCT116-stranded 0.50 194974 GGTGATCCTCCTCCGAGCGGTAGTAGAGGAGATATCGAGGGGCACTGCCTGCCCGCTGCTGGTACCAGGACACACCGTAGTCCCTGATGGTGACGTGCTGGGGGCTGAGCGTGCAGGAGAGTTGAGCCACTTGGCCTGGGAAGACCAGCAGTGCATCCAGCTGGGCCAGGACTGTCTGGGAAA|CATGGTAGTACTTGCACTGCTTCAGGGCCTCGCTGAAGCCCTCACACAGGGACAGGTCACTCTGAGTGGTGGAACAGTCCAGGAACTGCCTGATCTCGTAGGCGCAGGGCCCCATCTGCAGGGGCTGGGGGGCAGCGGGGGTGGGGGCCTGGGGG 30 0.828836478416495 0.814429654651587 0.39683502819916905 Y Y 3.39487633072087 3.74656995804013 3.39487633072087 0 0.0 0.0 Y 0.0 N Y 93 6888 ENSG00000128218 ENSG00000250479 - + 22 22 24096655 24110630 coding coding VPREB3 CHCHD10 24094930 24108021 - - 0.0 24095385 24108315 + - N 30.9217621072623 3.65385983447875 N SA538 2 0.0 1.28571428571429 1 2 2 Y Y 0.0 0.0 7 1.4251008824274298 1.2132615620666 1.4251008824274298 1.2132615620666 4 0.142857142857143 432.571428571429 0.977814293328214 HCT116-stranded 0.50 194975 AGCGGTAGTAGAGGAGATATCGAGGGGCACTGCCTGCCCGCTGCTGGTACCAGGACACACCGTAGTCCCTGATGGTGACGTGCTGGGGGCTGAGCGTGCAGGAGAGTTGAGCCACTTGGCCTGGGAAGACCAGCAGTGCATCCAGCTGGGCCAGGACTGTCTGGGAAACT|GGCTGGCCGGGAGGCCGCGCTGCGGCTTCCCCGAGGCATGGTGGCGGCGGTGGGACCCGGGCGACCTTAGAGACGGCGGCAGCGGTGCTGTCGCGGGGACAAATGCCGCAGCGCTTGTCACAGCCGGCGC 2 1.0 0.39716266912584497 0.6210300734144699 Y Y 3.38230645903694 3.15206901576442 3.15206901576442 0 0.0 0.0 Y 0.0 N Y 93 6888 ENSG00000128218 ENSG00000250479 - + 22 22 24096655 24110630 intron coding VPREB3 CHCHD10 24094930 24108021 - - 0.0 24095385 24110021 + - N 30.9179985042794 4.48880388801691 N SA538 1 0.0 1.0 1 0 2 N Y 0.0 0.0 5 1.15548720196819 0.760695741295723 1.15548720196819 0.760695741295723 4 0.2 356.2 0.988756642948862 HCT116-stranded 0.50 142131 GCTTCTTCAAGGACGTGGAGTCGGACTCTGCCAAGCAGTTTTTGCAGGCAGCAGAGGCCATCGATGACATACCATTTGGGATCACTTCCAACAGTGACGTGTTCTCCAAATACCAGCTCGACAAAGATGGGGTTGTCCTCTTTAAGAAG|GGTGACCTGGAGCAGGTGGGGCGCTTCATCCGGACTCGGAAAGTCTCCCTGGCCACCATCCACCCCTCAGGCCTGGCCGCCTTGCATGAAGCCGTGCTCTCTGGAAACCTGGAATGCGTGAAG 24 0.8465092625621159 0.432992593599588 0.3738065731552629 Y Y 3.72448538129198 3.5748554449114103 3.5748554449114103 0 0.0 0.0 Y 0.0684654099288247 N N 102939 93 ENSG00000185624 ENSG00000182676 + - 17 17 79818570 79792926 coding coding P4HB PPP1R27 79801035 79791368 - - 0.0 79813018 79792709 - + N - - N SA538 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 9 1.2614068621486 1.03030942175497 1.2614068621486 1.03030942175497 4 - - 0.9825152807583348 HCT116-stranded 0.50 142222 GTGCGGAGTAGGGGCGGGGCAGCCACACCTTCTCACCCACACAGTGGTGGTACTTCAGCAGGGGGCTGGTGCAGATGAAGACCTGCGTGCTGCGGAGAAGGACGCGGTTACCGCCGGGAGCCAGGAGCCCGCCCAGGACTCCGCCCGCCCCCCTCTCTCCTTACTCCG|ACACGGGGGCACATGCTGGTGCCCAAGCTGCATCTGTGGCTGTTGATGCTGGGCCCATCCCTTTGAACAGTGAGCACAGATAACAAGAGTACCTGCTGACTTGGCCCAAGAAGCTTGATTTTCTTCAGGTGTCCCAAAGATATTAGAGGCCATTTTGTTCTTCCTCACAGGTTGTTCT 12 0.707460449201197 0.9143011247774928 0.13856246533734198 Y Y 2.9380884529813 3.23424395875957 2.9380884529813 0 0.0 0.0 Y 0.0 N N 3458 23540 ENSG00000125458 ENSG00000189159 - + 17 17 73127890 73164376 coding intron NT5C HN1 73126320 73131343 - - 0.0 73127279 73144532 + - N 2.17527421049086 4.08012095195305 N SA538 1 0.108433734939759 1.0 1 0 1 N Y 0.0 0.108433734939759 19 1.46361712249304 1.59842396272266 1.59842396272266 1.46361712249304 4 22.5789473684211 185.263157894737 0.91974655805228 HCT116-stranded 0.50 767776 TTGACCATCGAATGAAGTGCTGGCAGAAATGGGAAGATGCTCAAATTACTTTGCTCAAAAAACGTGAAGCTGAAGCAAAAATGATGGTTGCTAACAAACCAGATAAAATACAGCAAGCTAAAAATGAAATAAGAGAGAAAGAACGAGTGAAGGATTTTAAAACCGTTATCATCAAGTACTTAGAATCACTAGTTCAAACACAACAACAG|GTGTTTAAGATAGAAGTGCTAATGAATGGAAGAAAACATTTTGTTGAAAAGAGATACAGCGAATTTCATGCTTTGCACAAAAAGCTTAAGAAATGTATAAAAACTCCAGAAATCCCTTCTAAACATGTTAG 6 0.900027242461504 0.753254228756606 0.641835327969586 N Y 3.1850280470173 3.3022815939675896 3.1850280470173 0 0.0 0.0 Y 0.0 N Y 2391 234 ENSG00000205302 ENSG00000064652 + - 5 5 122165803 122365049 coding coding SNX2 SNX24 122110691 122179134 + + 0.0 122163341 122272429 + - N - - N SA538 1 0.0 1.0 1 0 1 Y N 0.0 0.0 6 1.70434362290308 1.222890622083 1.70434362290308 1.222890622083 4 - - 0.988222128945458 HCT116-stranded 0.50 433431 CTTCAGCTGGTAAATTCCCTCCACAATGTTGAGTAGCTCCAGGCGGTCGATGCAGCCATTGCCATCCTTATCATAGATCTTGAATGTCCACTTCAGCTTGTGCTCCAGGGTGCCCCTCAGCACGAGATTCAGAGCTGCCACGTACTCCAGGAAGTCGATGGTGTTGT|CCTCTAAACATCTGTAAAGTGTTCTCATTTCATACTGAACTCTGTGCTTCTTGTAAATATGCACTGATTGGAGAAGAGTAAATCGCTCTATTTTCCTTGGAGGTTCATGTCTGAAATTAATG 10 1.0 0.956989921412475 0.703292533969781 Y Y 3.85272778345386 3.3787432414108505 3.3787432414108505 1 0.0 0.00344827586206908 Y 0.00344827586206908 N Y 95 3360 ENSG00000112599 ENSG00000048544 - + 6 6 42162654 42185603 coding intron GUCA1B MRPS10 42152139 42174539 - - 0.0 42156469 42178226 + - N - 1.4503156017429 N SA538 2 0.0 2.0 2 6 1 Y Y 0.0 0.0 6 1.43472994244383 0.9436478816073532 1.43472994244383 0.9436478816073532 4 - 53.3333333333333 0.955379029906119 HCT116-stranded 0.50 249853 GACCATAATAATATTGAGAATCTGCCCTTGCAGCTTTTCCTATGCACTAAACTACATTATTTGGATCTAAGCTATAACCACTTGACCTTCATTCCAGAAGAAATCCAGTATCTGAGTAATTTGCAGTACTTTGCTGTGACCAACAACAATA|AACATGATTCCCGTGACAGAATTCCGGCAGTTCTCTGAGCAGCAGCCTGCCTTCCGAGTGCTGAAGCCATGGTGGGATGTGTTTACCGATTACCTCTCAGTAGCCATGCTCATGATCGGCGTGTTTGGATGTACTTT 11 1.0 0.983473150313348 0.33255291172991 Y Y 3.47911741325579 3.77104735399867 3.47911741325579 3 0.992725986916879 0.0 Y 0.0 N Y 2592 4621 ENSG00000197147 ENSG00000171488 + - 1 1 90063423 90398809 coding utr5p LRRC8B LRRC8C 89990395 90098631 + + 0.0 90050348 90152029 + - N - 0.827874080985132 N SA538 2 0.0 1.33333333333333 1 2 1 N Y 0.0 0.0 6 1.1843743820173898 1.14585814195179 1.1843743820173898 1.14585814195179 4 - 9.33333333333333 0.9685324306330152 HCT116-stranded 0.50 530415 CCTTACCTCACTTGTCTCTAGCCGCAGCTTCCAAACCAGCGCCATTTCAAGGGACATCGACACAGCAGCCAAGTTCATTGGAGCTGGGGCTGCCACAGTTGGGGTGGCTGGTTCTGGGGCTGGGATTGGAACTGTGTTTGGGAGCCTCATCATTGGTTATGCCAG|ATTCTGCAGCCGAACACGTGTGACCTGTGTGGACAGTACTCGCTCAGTCTCCCTCCCCAGCCCTGCCCACAGTAAGCCCGGCCCCTTCTTTTCCCGGAGCCCCCGCCTCTCGGCCGCT 13 1.0 0.922902276462391 0.7619520557983409 Y Y 3.6161681303826296 3.72146071989581 3.6161681303826296 0 0.0 0.0035211267605633795 Y 0.0 N N 9439 3000 ENSG00000135390 ENSG00000170653 + - 12 12 54071192 54020199 coding upstream ATP5G2 ATF7 54026510 53901640 - - 0.0 54062932 54020361 - + N - - N SA538 2 0.0 1.8 1 4 1 N Y 0.0 0.0 5 1.4251008824274298 0.934018821590951 1.4251008824274298 0.934018821590951 4 - - 0.968139449356852 HCT116-stranded 0.50 577125 CACGTAGCCCCGCCCCTACTAGCTCCGCCCACAGCTGTGTCCGGAAGCAGCAAGCGTGCCTGGGCAGAGACCCCCAGAGTGTAAAGAGGTCCTGGGACAGGCTTTGCACGTTCCACAAGAG|TGTCTCGCTGTGTCGTCTAGACTGGAGTGCAGTGGTGTGATCATGGCTCAACTCCTAGGCTCAAGCGATCCTCCTGCCTCAGCCTCCGGAGTAGCTGCTGGGACTGCAGGAACGTGCCACCATGCCTGGCTCAAACACAAAGTTTTTTCATAAA 14 1.0 0.7218353632269201 0.334747468272843 Y Y 3.6000045358490698 3.24669003926412 3.24669003926412 2 0.991765480895916 0.0 Y 0.720026350461133 N N 1360 559 ENSG00000100949 ENSG00000157379 - + 14 14 24740945 24769039 utr5p intron RABGGTA DHRS1 24734744 24759804 - - 0.0 24740516 24767820 + - N - 0.914245265247549 N SA538 1 0.8496732026143791 1.0 1 0 1 N Y 0.0 0.8496732026143791 22 0.92438976157455 1.4732461825094398 1.4732461825094398 0.92438976157455 4 - 2.95454545454545 0.9832927063322572 HCT116-stranded 0.50 2328 CTCGGCCGGGCTCTAGGCGCCATGGCTCCCCGCGGGAGGAAGCGTAAGGCTGAGGCCGCGGTGGTCGCCGTAGCCGAGAAGCGAGAGAAGCTGGCGAACGGCGGGGAGGGAATGGAGGAGGCGACCGTTGTTATCGAGCATT|GAACGGCCGGTTTGTGGGCGATGCTGACCTTGAAAGACAGAAATTTTCAGATTTGAAACTCAACGGACCCCAGGATCACAGTCACCTTCTATATAGCACCATCCCC 19 0.368204203805158 0.7071728897940021 0.812147213851379 Y Y 3.49424793801946 3.48809356209009 3.48809356209009 2 0.9906039251345 0.0 Y 0.0 N Y 4167 13533 ENSG00000211450 ENSG00000198561 + - 11 11 57510529 57587018 coding coding C11orf31 CTNND1 57508825 57520715 + + 0.0 57509189 57561482 + - N - - N SA538 1 0.524590163934426 1.0 1 0 1 Y Y 0.0 0.524590163934426 5 1.14585814195179 0.587372661000495 1.14585814195179 0.587372661000495 4 - - 0.9752977780129928 HCT116-stranded CGHSA0398 0.50 1436 GGGGATGAAGTCCTGTACTGCTATGAAGTGCAGTTGGAAAGCAAGGTGCGGCGGAAAGGCCTGGGGAAGTTCCTCATACAGATCCTGCAGCTCATGGCCAACAGCACACAGATGAAGAAGGTTATGTTAACAGTATTTAAACACAATCATGGTGCCTACCAGTTCTTCAGAGAAGCGTTGCA|GAATTGGCCGTTGGGCTTACCTCCTGCTTCGTGACCTTCCTCCTGCCAGCGGGCTGGATCCTGTCACACCTGGAGACCTACAGGAGGCCAGAGTGAAGGGGTCCGTTCTGTCCCTCACACTGTGACCTGACCAGCCCCACCGGCCCATCCTGGTCATGTTACTGCATTTGTGGCCGGCCT 30 0.8311258522215171 0.8040359170913531 0.743402095345924 N Y 3.86529765513778 3.5514509715161 3.5514509715161 4 0.0 0.0 Y 0.0 N N 869 389 ENSG00000110583 ENSG00000256100 + - 11 11 63724800 63755818 coding intron NAA40 AP000721.4 63706431 63742092 + + 0.0 63721521 63743697 + - N - 109.553339115351 N SA538 1 0.0 1.0 1 0 1 N N 0.0 0.0 12 1.7524889229850802 1.53102054260785 1.7524889229850802 1.53102054260785 4 - 0.0833333333333333 0.988032765292377 HCT116-stranded 0.50 577773 AATTAACTGCCCTATCCAAAAAGACAAGACCTATAGCTACCTGAATAAACTACCAGTGAAAAGCGAATATCCCTCTATAAAACTGGTGGTGGAGTGGCAACTTCAGGATGACAAAAACCAAAGTCTCTTCTGCTGGGAAATCCCAGTACAGATC|GCTCTGAGGACTGCTCAGCTGGCCCAGGCCCCCCTCCCCAGCAGCTGCCCCAGAACCATGGAGAGTCTGAGTGAACTACAGAACCCGCTGCTGCCCAGGAGCCCTGCCCATCTCCATGGCCCCTATCCCTACCCGGAGACCCCACCCAGCTGGTCCTGCCAGGAAAAGCTCTACTCCTACCTCCTAG 29 1.0 0.775226310342557 0.495749811644679 N Y 3.4315223707792097 2.9893705042633503 2.9893705042633503 0 0.0 0.0 Y 0.0 N Y 6943 192 ENSG00000119655 ENSG00000183379 + - 14 14 74960880 74892805 coding utr5p NPC2 SYNDIG1L 74942895 74872596 - - 0.0 74947405 74876504 - + N - - N SA538 1 0.0 1.0 1 0 1 Y N 0.0 0.0 13 1.51176242257505 1.65619832282107 1.65619832282107 1.51176242257505 4 - - 0.988222128945458 HCT116-stranded 0.50 107674 AGCTGGAGACCAGCCCGGCCAACACAGCGAAACCCCGTCTCCACCAAAAAAAACCGAAAACCAGTCAGGCGTGGCGGTGCGCGCCTGCAATCGCAGGCACTCGGCAGGCTGAGGCAGGAGAATCAGGCAGGGAGGTTGCAGTGAGCCGAGATGGCAGCAGTACCGTCCAGCCTTGG|AGGAGGGGAAGCACACAGATGGGCAGGTGCAGGAGCTGGGGTGAGTGCTGTGGGGCTCCGGCCCCATGGTAGCGTCTAGGGGTGGGTGCCTGTGACTCCCAAAGCCCAAGTAGGCATGTGTTACAGTGATCTTTTAGTTTTGCCATCTGCAGAGGGCT 13 0.8519308746553679 0.9628317877371791 0.953745589253307 N Y 3.6282434885265897 2.98992264086242 2.98992264086242 3 0.943208010580011 0.0 Y 0.0 N N 3642 131 ENSG00000144401 ENSG00000162944 + - 2 2 208490652 198540769 utr3p intron METTL21A RFTN2 208445355 198435524 - - 0.0 208474573 198479411 - + N - 13.3507228158391 N SA538 275 1.0 39.2 2 10 1 N N 1.0 1.0 10 1.58879490270626 1.13622908193538 1.58879490270626 1.13622908193538 4 - 0 0.952800621336928 HCT116-stranded 0.50 249840 ATTTACCAATTTGCTTCTCCTCCTGCTTCTCCGCCTCCTTTAGTTTGCTCTGAGCACTGATGCTGTCGGCATTGTACATGTGATATGTCTTCATCACCGAGTAGAGCTCGTTCAGGACCTTCATCAAATCATCTTGGAGCTGCTGGCCGACTTCTTTACTC|TTTGACCTGAGTATCGTACTCTGCTATGATCTCCTTATCCTTTTTGAATTTGGCTGGAGACGTCATGTTTTCCTTCTTTCTTCCAAATTCGAATTGTGAATTGATAGATCCACGGAAAAAATCCAACCACCTAAATCAAT 4 1.0 0.5760217478474561 0.926019417555725 N N 3.55553920790569 3.44143830342756 3.44143830342756 3 0.0 0.0033112582781456 Y 0.0175496688741721 N Y 1367 336 ENSG00000163486 ENSG00000196369 - + 1 1 206637783 144094424 coding intron SRGAP2 SRGAP2B 206516198 143913615 + + 0.0 206566046 144094424 - + N - 1.2745895999762 N SA538 6 0.0 4.2 3 5 1 N N 0.0 0.0 5 1.17474532200099 1.2132615620666 1.2132615620666 1.17474532200099 4 - 9.2 0.952671648050907 HCT116-stranded 0.50 248368 TCTGAGGATCATGTTTGTACCATTGCAAAAGTCCCTTTCCGGGGGGCTCCTTGTAGTGACGCTGCAGGACGTCAGGTGCCCTACAAAACGATCATGAAGCAAATAAATAGTTCTATTTCTGGAAACCTATGGGATAAAGATCAGCGGGCTCCTTATTATAACTAT|AAAGTTTCCCAGGCAGCTGCAGACTTGAAACAGTTCTGTCTGCAGAATGCTCAACATGACCCTCTGCTGACTGGAGTATCTTCAAGTACAAATCCCTTCAGACCCCAGAAAGTCTGTTCCTTTTTGTAGTAAAATGAATCTTTCAAAGGTTTCCCAAACCACTCCTTATGATCCA 29 0.952389134790484 0.494239990132912 0.422550634528635 Y Y 3.46807512488172 3.3551310813528503 3.3551310813528503 2 0.969785834888474 0.0 Y 0.993957166977695 N Y 1162 8755 ENSG00000117151 ENSG00000174021 + - 1 1 85040163 84972248 coding coding CTBS GNG5 85018804 84964008 - - 0.0 85028940 84967653 - + N - - N SA538 4 0.0 2.89473684210526 1 18 1 Y Y 0.0 0.0 19 1.66582738283747 1.51176242257505 1.66582738283747 1.51176242257505 4 - - 0.962034293161364 HCT116-stranded CGHSA0321 0.50 180426 TAACCATGAAGGCTCAGCTTCCCGCCAGAAAGCCCTGAGCCTAGTAAGCTGTTTCGCGGGGGGCGTCTTTTTGGCCACTTGTCTCCTGGACCTGCTGCCTGACTACCTGGCTGCCATAGATGAGGCCCTGGCAGCCTTGCACGTGACG|GGGACTCCTCTCCAGGTTTCTCTAAGGAGATTGCAGCAGCCCTGGCCGGAGTGCCTGGCTTTGAGGTGTCAGCAGCTGGATTGGAGCTAGGGCTTGGGCTAGAAGATGAGCTGCGCATGGAGCCACTGGGCCTGGAAGGGCTA 9 1.0 0.6057724724330661 0.545080500778963 Y Y 3.56914214935951 3.5310618119471497 3.5310618119471497 3 0.9930309416610792 0.0 Y 0.0 N Y 2895 2619 ENSG00000143570 ENSG00000160741 + - 1 1 153940188 153931101 coding coding SLC39A1 CRTC2 153931575 153920145 - - 0.0 153934696 153920805 - + N - 3.27837856480159 N SA539 1 0.0 1.0 1 0 2 N Y 0.0 0.0 5 1.3280378348864 1.3811593482818505 1.3811593482818505 1.3280378348864 4 - 41.6 0.989185024673655 HCT116-stranded CGHSA0331 1.0 180427 AGGCGGTAGCTTCAGAGCCTCCAGTGCCTGTGGGGCTGGAGGTGAAGTTGGGGGCCCTGGTGCTGCTGCTGGTGCTCACCCTCCTCTGCAGCCTGGTGCCCATCTGTGTGCTGCGCCGGCCAGGAGCTAACCATGAAGGCTC|AGGGGACTCCTCTCCAGGTTTCTCTAAGGAGATTGCAGCAGCCCTGGCCGGAGTGCCTGGCTTTGAGGTGTCAGCAGCTGGATTGGAGCTAGGGCTTGGGCTAGAAGATGAGCTGCGCATGGAGCCACTGGGCCTGGAAGGGCTAAACATG 7 0.820547152132882 0.61825219226037 0.3857554715789071 Y Y 3.71145150129163 3.5184919402632304 3.5184919402632304 0 0.992981699722142 0.0 Y 0.0 N Y 2895 2619 ENSG00000143570 ENSG00000160741 + - 1 1 153940188 153931101 coding intron SLC39A1 CRTC2 153931575 153920145 - - 0.0 153935005 153920805 - + N - 3.28335953599546 N SA539 2 0.0 1.2 1 1 2 Y Y 0.0 0.0 5 1.03055735987184 1.16867329470003 1.16867329470003 1.03055735987184 4 - 40.8 0.9612764437954692 HCT116-stranded CGHSA0331 1.0 176919 GCCCATCTGTGTGCTGCGCCGGCCAGGAGCTAACCATGAAGGCTCAGCTTCCCGCCAGAAAGCCCTGAGCCTAGTAAGCTGTTTCGCGGGGGGCGTCTTTTTGGCCACTTGTCTCCTGGACCTGCTGCCTGACTACCTGGCTGCCATAGATGAGGCCCTGGCAGCCTTGCACGTGAC|GTTACAGGCCCAAAAACTGCGACTGGCATACACAAGGAGCTCTCATTATGGTGGGTCTCTGCCCAATGTTAACCAGATTGGCTCTGGCCTGGCCGAGTTCCAGAGCCCCCTCCACTCACCTTTGGATTCATCTCGGAGCACTCGGCACCATGGGCTGGTGGAACGGGTGCAGCGAGATCCTCGAA 7 0.21032910499867 0.644502067031552 0.555230689325217 Y Y 3.5204207511572005 3.50744965188915 3.50744965188915 0 0.99436584644597 0.0 Y 0.60560925121788 N Y 2895 2619 ENSG00000143570 ENSG00000160741 + - 1 1 153940188 153931101 coding coding SLC39A1 CRTC2 153931575 153920145 - - 0.0 153934696 153927642 - + N - - N SA539 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 7 1.77425854740822 1.69988842865459 1.77425854740822 1.69988842865459 4 - - 0.9809163794573472 HCT116-stranded CGHSA0331 1.0 531339 CGCTGCTCCAGCTCCACCTCACTGCGCACGGCCTCGATGGCCTGGTTGACCAGCTCCAACTCCAGCACATCCGGGCGCGGCTCCTCCCCCAGGCCCAGGGTGCCATTCTCCCTCTGCGCGGGGGGCTTGGGCAGCTCAGGGTTGTAGGGGTCGTAACCCAGC|CCTGTGTGCGTCCGCAGGTGCGACTTTAGGTGCGAGGACTTGTAGTAGGCTTTGGCGCAGTCCGGGAAGGGACAGCGGTGGCTCTTGGCGGCGGCGGAGGGCGCGGCGCCGGGGGCGCGGCCCGAGGACGGGGACGAGGCGGCTGAGGAG 12 0.857980171644362 0.9624048452916992 0.28587197663946395 Y Y 3.31638839653118 3.55401162459584 3.31638839653118 2 0.0 0.0 Y 0.00319488817891378 N Y 4084 5969 ENSG00000079313 ENSG00000129911 - + 19 19 1848452 1863567 coding intron REXO1 KLF16 1815248 1852399 - - 0.0 1828630 1863040 + - N - 1.66310445700039 N SA539 1 0.41538461538461496 1.0 1 0 1 N Y 0.0 0.41538461538461496 7 1.57239679650549 1.33866213756549 1.57239679650549 1.33866213756549 4 - 85.1428571428571 0.9783134541741452 HCT116-stranded 1.0 532052 GAGGATGTGGCTATGGCATTCACACAGGAGGAGTGGGAACAGCTGGACCTGGCCCAGAGGACACTGTACCGAGAGGTGACACTGGAGACCTGGGAGCATATTGTCTCCCTGGGGCTTTTCCTTTCCAAATCTGATGTGATCTCTCAGCTGGAGCAAGAAGAGGACCTGTGCAGGGCAGAGCAGGAGGCCCCCCGAG|AAATTTGGAGACAGACAACTTGTCACGCATACAGGGAAAATGACATTTGAAGACAAAGTCAGACATCTACAAGCCAAGGAATGCCAGAGATTGCCAGCAAACCACCAAAAACTAAGGAAAGGGATGGAACATATACTTTCTTGTAGCCCTCA 28 0.7708566788188159 0.886197105767529 0.521119643804442 Y Y 3.07717480442437 3.4106386976703 3.07717480442437 0 0.9934399034836372 0.0 Y 0.9934399034836372 N N 2095 854 ENSG00000198131 ENSG00000083842 + - 19 19 58775010 58807254 coding upstream ZNF544 ZNF8 58740070 58790317 + + 0.0 58758160 58785732 + - N - - N SA539 1 1.0 1.0 1 0 1 N Y 0.0 1.0 18 2.07173902242278 1.6680155206173102 2.07173902242278 1.6680155206173102 4 - - 0.97051038766547 HCT116-stranded 1.0 79031 GGGGGGCCACGTGTGCTGGCTGCGGGAGGGGGCCGAGCTGTGCCCGGGAGATAAGTATGAGATGCGCAGCCACGGCCCCACCCACAGCCTGGTCATCCATGACGTTCGACCTGAGGACCAAGGCACTTACTGCTGCCAGGCCGGCCAGGACAGCACCCACACACGGCTGCTGGTAGAGG|GACCCGCTACATCAGCACGGAGCTGGGCATCAGGCAGAGGCTGCTGGTGGCGGTGCTGACCTCTCAGACCACGCTGCCCACGCTGGGCGTGGCCGTGAACCGCACGCTGGGGCACCGGCTGGAGCGTGTGGTGTTCCTGAC 11 0.307270559858054 0.6145395197369471 0.185071981489632 Y Y 3.32696667658884 3.36720643949681 3.32696667658884 1 0.992929895495018 0.0 Y 0.215218399946974 N Y 538 57425 ENSG00000124006 ENSG00000123989 + - 2 2 220436581 220408509 coding coding OBSL1 CHPF 220415451 220403669 - - 0.0 220416251 220406911 - + N - 3.55246501815631 N SA539 1 0.0 1.0 1 0 1 N Y 0.0 0.0 6 1.54052388846822 1.14742468934185 1.54052388846822 1.14742468934185 4 - 444 0.914913924667466 HCT116-stranded 1.0 1713 CTGCTATGAAGTGCAGTTGGAAAGCAAGGTGCGGCGGAAAGGCCTGGGGAAGTTCCTCATACAGATCCTGCAGCTCATGGCCAACAGCACACAGATGAAGAAGGTTATGTTAACAGTATTTAAACACAATCATGGTGCCTACCAGTTCTTCAGAGAAGCGTTGCA|GAATTGGCCGTTGGGCTTACCTCCTGCTTCGTGACCTTCCTCCTGCCAGCGGGCTGGATCCTGTCACACCTGGAGACCTACAGGAGGCCAGAGTGAAGGGGTCCGTTCTGTCCCTCACACTGTGACCTGACCAGCCCCACCGGCCCATCCTGGTCATGTTACTGCATTTGTGGCCGG 16 0.4331670987197629 0.946441648332478 0.37664312772593295 N Y 3.86529765513778 3.5514509715161 3.5514509715161 4 0.0 0.0 Y 0.0 N Y 599 11055 ENSG00000110583 ENSG00000176340 + - 11 11 63724800 63744015 coding coding NAA40 COX8A 63706431 63742079 + + 0.0 63721521 63743697 + - N - - N SA539 1 0.0 1.0 1 0 1 N N 0.0 0.0 8 1.48740237507276 1.81675575812459 1.81675575812459 1.48740237507276 4 - - 0.954594600494351 HCT116-stranded 1.0 55021 CATTCAGATTTGGGAGAAGTAGCCCCAGAAATAAAAGCATCAGAGAGACGAACAGCTGTGGCCATTGCAGATTTGGAATGGAGAGAAATGGAAGGAGATGATTGCGAGTTCCGTTATGGAGATGGTACAAATGAGGCTCAGGACAATGATTTTCCAACAG|GTGCTGTCCTGGAGCCGAGAGCTGCCTTGCGCTTGGCGCGCCCTGCACACCTCCCCGGTCTGCGCCAAGAACCGGGCGGCCCGAGTACGCGTAAGCAAGGGGGACAAGCCGGTGACCTACGAGGAGGCACACGCGCCGCACTACATCGCCCACCGTA 13 0.918763489210716 0.422190173608798 0.5688389514492951 Y Y 3.59425138750382 3.24991303975317 3.24991303975317 0 0.9936506028922808 0.0 Y 0.9682530144614028 N Y 2044 4893 ENSG00000106608 ENSG00000062582 + - 7 7 43966010 43909492 coding coding URGCP MRPS24 43915493 43906157 - - 0.0 43921258 43908975 - + N - - N SA539 1 0.2890625 1.0 1 0 1 N Y 0.2890625 0.0 5 1.35991074292367 1.40240795364003 1.40240795364003 1.35991074292367 4 - - 0.9784593765581427 HCT116-stranded 1.0 379239 CGTTTCTGGCAGGAAATCATAATCTAGGTACTCATATTCGGTGGCCTGTCTCCGGTCCCGGGCAAGCAGGGGACCCAAGGCTTTCTCGGCTTCATCTGCCCAGGTGTCCCACAGCTGCAAGCTGTTGCCAGGGCCCAGTAGGATCAGCAACAGGAGGAGTTGCAGAGGCATGG|CACAGCAACAATCTCTTGTTTCCTGGGATCAATGACTCTCACTTTCTTGTCTTTGGAAGCTGTGCAGATCAGACTGCCATTCCGGTTCCAGCTCACATTGTAAATCATGTCTGAATGCATATCGTCCAAGTTTATAA 10 0.8266203087265559 0.5326453461153 0.7331465637018191 Y Y 3.35823029066252 3.43105836246279 3.35823029066252 0 0.0 0.0 Y 0.0 N Y 2899 10439 ENSG00000110876 ENSG00000110880 - + 12 12 109027735 109125372 coding intron SELPLG CORO1C 109015686 109038885 - - 0.0 109018088 109052514 + - N - 2.56739212518534 N SA539 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 5 1.76363424472913 1.37053504560276 1.76363424472913 1.37053504560276 4 - 103.8 0.979068084922023 HCT116-stranded 1.0 379994 CTGGAGGCTCCGTTTCTGGCAGGAAATCATAATCTAGGTACTCATATTCGGTGGCCTGTCTCCGGTCCCGGGCAAGCAGGGGACCCAAGGCTTTCTCGGCTTCATCTGCCCAGGTGTCCCACAGCTGCAAGCTGTTGCCAGGGCCCAGTAGGATCAGCAACAGGAGGAGTTGCAGAGGCATGGCA|CCACACTGGCCGTGTCTGTGGTTTTCTTGGGGATGCTGATCAGGTCGCACTTCTTGTTTGCAGTGGGCTTGCTATCCAGAATGTTCTTCTTGACCACCTTGAGATCCCTGTTTTTGCCTGGAATGTACCCGTGCTTCAAGGAGATGAGGATTGGGTCTGCATTCTTGCCTT 151 1.0 0.702806312781865 0.6716777143619971 Y Y 3.30434773350738 3.41419256772658 3.30434773350738 0 0.0 0.0028011204481793697 Y 0.0028011204481793697 N Y 2899 10439 ENSG00000110876 ENSG00000110880 - + 12 12 109027735 109125372 coding intron SELPLG CORO1C 109015686 109038885 - - 0.0 109018088 109042381 + - N - 2.17855251825811 N SA539 1 0.0 1.0 1 0 2 N Y 0.0 0.0 91 2.0504904170645903 1.8592529688409496 2.0504904170645903 1.8592529688409496 4 - 6.61538461538461 0.9891410737404358 HCT116-stranded 1.0 380357 CATAGAGGCAAGTGGGGGAGGAGCGTTCCTTGTCCTCCCTCTGCACAAGACTGGTCGAATTGACAAATCTTACCCTACAGTATGTGGCCACACAGGACCAGTGCTGGACATAGACTGGTGCCCACATAACGATCAGGTCATTGCCAGCGGTTCAGAGGACTGCACGGTCAT|GGTGCCATGCCTCTGCAACTCCTCCTGTTGCTGATCCTACTGGGCCCTGGCAACAGCTTGCAGCTGTGGGACACCTGGGCAGATGAAGCCGAGAAAGCCTTGGGTCCCCTGCTTGCCCGGGACCGGAGACAGGCCACCGAATATGAGTACCTAGATTATGATTTCCTGCCAGAAACGGA 9 0.657267699602555 0.956043540376134 0.149230595831432 Y Y 3.65016023140539 3.47076375903745 3.47076375903745 4 0.0 0.0 Y 0.0 N Y 10439 2899 ENSG00000110880 ENSG00000110876 + - 12 12 109125372 109027735 coding intron CORO1C SELPLG 109038885 109015686 - - 0.0 109072048 109018088 - + N - 161.368200885848 N SA539 1 0.0 1.0 1 0 1 N Y 0.0 0.0 8 1.73176133669186 1.69988842865459 1.73176133669186 1.69988842865459 4 - 0.875 0.936734089560832 HCT116-stranded 1.0 436116 TGAACTTGTCGTACAGCACAGCACCGTGGACGTTCACGAGGCTGCAACGAGCCAGGCCACTCTCCCGGTGGGGCCCCAGCCCCACCATCTCGCAGTCCATGGCCACCACCTCACGGCTCCCAGCCATGTTCCTTGGGGACCCTCAGAGATG|CGGCCACACCGGAAGCCCAGCCAGGGAGCCCCGCCCCCTTCTCAATTCCTTCTGTCCTGTGCCTCCCTGGCTCCTCCTCTGCTGCCGTGGGCCAGGTCATCGGGCCAGTACTGGTCCTCCATGTACTGTTCCATGTCTGTGCTGCTGTCAGGTTCTCTGTCCTCGGGGCAGG 16 0.4516120790774481 0.274324095926145 0.6281214467734111 Y Y 3.5319270478477 2.9380579477577595 2.9380579477577595 0 0.0 0.0 Y 0.0 N N 300 6345 ENSG00000172183 ENSG00000181026 - + 15 15 89199714 89175513 utr5p utr3p ISG20 AEN 89179384 89164527 + + 0.0 89182574 89173566 - + N - 0.209514835193347 N SA539 1 0.0 1.0 1 0 2 N Y 0.0 0.0 7 1.48740237507276 1.4342808616773102 1.48740237507276 1.4342808616773102 4 - 43.2857142857143 0.9662101314536752 HCT116-stranded 1.0 436083 GAGGGCGGGTAAGCGAGCTGGCCCGCTGTTCCATTGTGAGCTACCATGGCAATGTCCTCTATGACAAGTACATCAGGCCTGAGATGCCCATCGCTGACTACCGTACCCGCTGGAGTGGCATCACTCGGCAGCACATGCGCAAGGCTGTCCCCTTCCAGGTGGCCCAGAAAGAGATCCT|GCAGCTCCTGAAAGGCAAGCTGGTGGTGGGTCATGACCTGAAGCACGACTTCCAGGCACTGAAAGAGGACATGAGCGGCTACACAATCTACGACACGTCCACTGACAGGCTGTTGTGGCGTGAGGCCAAGCTGGACCACTGCAGGC 10 1.0 0.3833596876316209 0.7077836599616179 Y Y 3.39809933120991 3.43039601505348 3.39809933120991 0 0.0 0.187439409905163 Y 0.187439409905163 N Y 6345 300 ENSG00000181026 ENSG00000172183 + - 15 15 89175513 89199714 coding coding AEN ISG20 89164527 89179384 + + 0.0 89169980 89195341 + - N - - N SA539 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 6 1.9229987849155 1.33866213756549 1.9229987849155 1.33866213756549 4 - - 0.969600225127084 HCT116-stranded 1.0 463244 ACTCATCATTCTTAGAGAGTGGAATTAAGACTGCGAGCAAATTGGCCCTTTCCATGGCTCCCAAGGGCAACAGCGTGCTGCACCTGCCACTGTGGGTGTGCCCGGACTGCCGCAGGACCGTGGAGAAGGAGGAGAGGCATGGCGGCCTTGACCAGCCAGTG|AGAAATTTCGGCAGAGGCGGACCGGGAACCTCAGCAGCTGCAGAACTACTGGTCAGAAGTGCGCTACACGGTGCGCTGCATCTACCGCCAGGCAGGAACCCCGCTGGCAGATGACCAGGACCAGTCTCTGGTGCC 17 0.8490678032352249 0.942341901728967 0.207226861621643 Y Y 3.41525614272 3.4655144718019804 3.41525614272 6 0.992617533358274 0.0 Y 0.0 N N 14990 1490 ENSG00000063978 ENSG00000125386 + - 4 4 2627047 2734292 utr3p utr5p RNF4 FAM193A 2463947 2626988 + + 0.0 2598056 2628137 + - N 6.43134571604023 0.116494346821619 N SA539 1 0.0 1.0 1 0 1 N Y 0.0 0.0 7 1.4342808616773102 1.14742468934185 1.4342808616773102 1.14742468934185 4 30.2857142857143 1.57142857142857 0.949158395900462 HCT116-stranded 1.0 180201 TGGAGGAGCTGTGGTTGGAGCAGGAGGTGGCACGGCAGGGCCTGGAGGGCTCCCTATGAGTGGCGGAGCAGGCCCAGGAGGCGCTGGAGCAACAGCTCCCCACACTGCACCATGAGCTCAGTTGGCTGCAGGAGCAGCTAGCAC|AGGCAATCTGAAGGCAAATCCTGTTTAGACCCAGGCGAAGGTTCCCGGTGACCCGGGCTCTCACCAGCCAATTGTCCCTTGCCGTCCTCCTGAGGGTGCCTGGAGCTTAAGCACTGTGTGCTCTTGGCCTCCACACTGGGG 25 1.0 0.84330387693855 0.535144321904268 Y Y 3.42204236083514 3.631930497332061 3.42204236083514 1 0.992932599315578 0.0 Y 0.0 N Y 1519 2798 ENSG00000215908 ENSG00000219481 + - 1 1 16971178 16940083 intron intron CROCCP2 NBPF1 16944751 16888818 - - 0.0 16952270 16935274 - + N - - N SA539 6 0.0816326530612245 2.8 1 8 1 N Y 0.0 0.0816326530612245 10 1.21117050541639 1.04118166255093 1.21117050541639 1.04118166255093 4 - - 0.9006091644089308 HCT116-stranded 1.0 290552 AGCCAGAGGAGAAAGCAAGTGTCTCTGCCAACGTGTGTTCTGCCTAGGGAGACAGGGAGCTGGCTTGGGGCTGTGTAGTCCCAACAGGCAGCTGCCAGCCCAGGATGCCTGACTCTGCTCTTGTCTCTGTCCAGCTGCTGTGATATTAACCGTGGAGT|CTTTGCCATCCTGGGCCATGCAACCTGTAGCTCTCGGCCTCTTCTGTCTCCTTTCAGGCTGAGTCTCTGAATCTGTCTCCATTTGTGACTCTGGTTTCCATGGGATACATAGATGTGGAGCCTCAGGAGGGCAG 24 1.0 0.7962992239820641 0.5930868968043579 Y Y 3.72824693801095 3.46977054206091 3.46977054206091 0 0.0 0.0 Y 0.0 N N 452 1451 ENSG00000135740 ENSG00000196155 + - 16 16 67306093 67323402 coding utr5p SLC9A5 PLEKHG4 67271586 67311413 + + 0.0 67300014 67311497 + - N 0.115779799757715 0.158695049243268 N SA539 1 0.0 1.0 1 0 1 N Y 0.0 0.0 9 1.72113703401277 1.1792975973791202 1.72113703401277 1.1792975973791202 4 1 0.555555555555556 0.986808835342605 HCT116-stranded 1.0 348466 TGCCTGAAAACTCACCATCTGAAAGGGAATCAGGCCTGTAGCTCGGATATGCACTGGCTCATCAACAAGTGCACTCACAGGGGTAGCTGTCAACTGGATCATTTTTTTAGTGTGGCACCTGGGATGATTCTTCAGGAATATCTTCAGCAAAACCTCAA|AACCCTGCACATCTGGTGGAGTCTGGAGTTAGGGACTACATGACCCAAGTCATCAGCTAAATGAGCCAGAAGATTGAACTTTAGACGACTATCTTCCAGGGAGATGTCTTGCCAATTACTAGGAAGAGATGAACCAAAAA 29 1.0 0.640456777582067 0.636029219595493 Y Y 3.49847350305486 3.6035982586987 3.49847350305486 10 0.0 0.0 Y 0.0 N Y 5249 1653 ENSG00000136881 ENSG00000136897 - + 9 9 104145801 104160896 utr5p coding BAAT MRPL50 104122699 104149915 - - 0.0 104133745 104152859 + - N - 0.318365279329365 N SA539 2 0.0 1.27777777777778 1 5 2 Y Y 0.0 0.0 18 1.72113703401277 1.3811593482818505 1.72113703401277 1.3811593482818505 4 - 12.1111111111111 0.94233921490433 HCT116-stranded 1.0 348465 TCCGTTTTCATCTTCCAGTGATGCCTGAAAACTCACCATCTGAAAGGGAATCAGGCCTGTAGCTCGGATATGCACTGGCTCATCAACAAGTGCACTCACAGGGGTAGCTGTCAACTGGATCATTTTTTTAGTGTGGCACCTGGGATGATTCTTCAGGAATATCTTCAGCAAAACCTCAAA|ACCTGAATCGAGACCAAAATTCTCTACATGGTGTCCCTGAGACTGTCCACATGAAGACTCTTCTGGTAATGCCCGACACAGATCGCGCCGCCATCTTCGATGAGATCCACGGGCCTGAGCGCAGCCTTCAGCCAGCAGTGACGCGCCCAGACC 89 1.0 0.50601593601148 0.465514211086171 Y Y 3.44615838200292 3.6035982586987 3.44615838200292 0 0.0 0.0 Y 0.0 N Y 5249 1653 ENSG00000136881 ENSG00000136897 - + 9 9 104145801 104160896 utr5p intron BAAT MRPL50 104122699 104149915 - - 0.0 104133745 104160783 + - N - 0.432693530930783 N SA539 3 0.0 1.3666666666666698 1 32 2 Y Y 0.0 0.0 90 1.99736890366914 1.5298995857891298 1.99736890366914 1.5298995857891298 4 - 2.67777777777778 0.956240287150548 HCT116-stranded 1.0 532333 TCCGCTTCCGGTTCCTAGCGTTAACTGCGACCGGGGTTCAGCGCTCGGGTGAGGAGCTGGTGGCGTCGGCAGGTTCGAGGCGATTCG|AGGCCGAGTGTACTACTTCAACCACATCACTAACGCCAGCCAGTGGGAGCGGCCCAGCGGCAACAGCAGCAGTGGTGGCAAAAACGGGCAGGGGGAGCCTGCCAGGGTCCGCTGCTCGCACCTGCTGGTGAAGCACAGCCAGTCACGGCGGCCCTCGTCCTGGCGGCAGGAGAAGATC 54 0.901253010188122 0.908990248588974 0.748969497927381 N Y 3.36819965647335 3.77530342425761 3.36819965647335 0 0.0 0.0 Y 0.0 N Y 5763 2078 ENSG00000198258 ENSG00000127445 + - 19 19 9940791 9960358 utr5p coding UBL5 PIN1 9938568 9945933 + + 0.0 9938660 9949112 + - N - - N SA539 2 0.0 1.2 1 4 1 N N 0.0 0.0 20 1.10492747862548 1.88050157419914 1.88050157419914 1.10492747862548 4 - - 0.930444624955893 HCT116-stranded 1.0 531244 TCAGTAGGTGACCCCGCCCCTGGATTCTGGAAGACCTCACCATGGGACGCCCCCGACCTCGTGCGGCCAAGACGTGGATGTTCCTGCTCTTGCTGGGGGGAGCCTGGGCA|GTGACCTTTCCCTCTGACCTCATGTGCGTGGATGTCAAGCTCATCTCCCCCCAGGACTGCACGAAGGTTTACAAGGACTTACTGGAAAATTCCATGCTGTGCGCTGGCATCCCCGACTCCAAGAAAAACGCCTGCAATGGTGACTCAGGGGGACCGTTGGTGTGCAGAGGTACCCTGCAAGGTCTGGTGTCCTGGGGAACTTTCCCTTG 27 1.0 0.392036276213628 0.532743419431127 Y Y 3.3536034980430003 3.55231620741665 3.3536034980430003 0 0.9909375 0.0 Y 0.0031250000000000396 N Y 929 7002 ENSG00000129455 ENSG00000169035 + - 19 19 51504958 51487320 coding coding KLK8 KLK7 51499264 51479729 - - 0.0 51504354 51483180 - + N - - N SA539 1 0.0 1.0 1 0 3 Y Y 0.0 0.0 10 0.7224525821781992 1.72113703401277 1.72113703401277 0.7224525821781992 4 - - 0.990772418788709 HCT116-stranded 1.0 531243 CCAGGCAGAGAACTGAAGTACTGGGGCCTCCTCCACTGGGTCCGAATCAGTAGGTGACCCCGCCCCTGGATTCTGGAAGACCTCACCATGGGACGCCCCCGACCTCGTGCGGCCAAGACGTGGATGTTCCTGCTCTTGCTGGGGGGAGCCTGGGC|AGCCCAGGGTGACAAGATTATTGATGGCGCCCCATGTGCAAGAGGCTCCCACCCATGGCAGGTGGCCCTGCTCAGTGGCAATCAGCTCCACTGCGGAGGCGTCCTGGTCAATGAGCGCTGGGTGCTCACTGCCGCCCACTGCAAGATGAATGAGTACACCGTGCACCTGGGCAGTGATACG 41 1.0 0.291364072610078 0.45891744095899 Y Y 3.30232144676095 3.44615838200292 3.30232144676095 0 0.993567531348713 0.0 Y 0.0 N Y 929 7002 ENSG00000129455 ENSG00000169035 + - 19 19 51504958 51487320 coding coding KLK8 KLK7 51499264 51479729 - - 0.0 51504354 51485170 - + N - - N SA539 1 0.0 1.0 1 0 3 Y Y 0.0 0.0 23 1.57239679650549 1.93362308759459 1.93362308759459 1.57239679650549 4 - - 0.9841078910263248 HCT116-stranded 1.0 531246 GGCCTCCTCCACTGGGTCCGAATCAGTAGGTGACCCCGCCCCTGGATTCTGGAAGACCTCACCATGGGACGCCCCCGACCTCGTGCGGCCAAGACGTGGATGTTCCTGCTCTTGCTGGGGGGAGCCTGGGCAG|TGAGTACACCGTGCACCTGGGCAGTGATACGCTGGGCGACAGGAGAGCTCAGAGGATCAAGGCCTCGAAGTCATTCCGCCACCCCGGCTACTCCACACAGACCCATGTTAATGACCTCATGCTCGTGAAGCTCAATAGCCAGGCCAGGCTGTCATCCATGGTGAAGAAAGTCAGGCTGCCCTCCCGCTGCGAACCCCCTGGAACCACCT 76 0.869451890248878 0.7639407933258051 0.8518150859728431 Y Y 3.37295958784206 3.46977054206092 3.37295958784206 0 0.9925031236984592 0.0 Y 0.0 N Y 929 7002 ENSG00000129455 ENSG00000169035 + - 19 19 51504958 51487320 coding coding KLK8 KLK7 51499264 51479729 - - 0.0 51504354 51483743 - + N - - N SA539 1 0.0 1.0 1 0 3 N Y 0.0 0.0 26 1.46615376971458 2.0504904170645903 2.0504904170645903 1.46615376971458 4 - - 0.97877012167563 HCT116-stranded 1.0 313736 TTGATCAGTGATAAAATTGGATCACTTGGATTAGGAACTGGAGAAGATGATGACTATGTTGATGATTTTAATAGTACCAGCCATCGCTCAGAGAAAAGTGAGATAAGTATTGGTGAAGAGATAGAAGAAGACCTTTCTGTGGAAATAGATGACATCAATACCAGTGATA|AGAGTCACCTCTACTTTCCTGCTACCGCTGCCTGTGAGCTGAAGGGGCTGAACCATACACTCCTTTTTCTACAACCAGCTTGCATTTTTTCTGCCCACAATGAGCGGGGAATCAATGAATTTCAGCG 11 0.8245324937810871 0.50642329954863 0.4343457717433 Y Y 3.54040868314203 3.3995031233403905 3.3995031233403905 0 0.992152496089504 0.0 Y 0.0 N Y 629 1332 ENSG00000213066 ENSG00000112486 + - 6 6 167455906 167553184 coding utr5p FGFR1OP CCR6 167412670 167525295 + + 0.0 167447459 167549526 + - N - - N SA539 1 0.0 1.0 1 0 2 N Y 0.0 0.0 7 1.5511481911473102 1.11555178130457 1.5511481911473102 1.11555178130457 4 - - 0.9891410737404358 HCT116-stranded CGHSA0270 1.0 313327 GCGTACCCTGCTGCGGCCGTTGGCCGTTAGCGCGGCTTCGGCGGTTGTCTTGGAGAAGCAAGATGGCGGCGACGGCGGCCGCAGTGGTGGCCGAGGAGGACACGGAGCTGCGGGACCTGCTGGTGCAGACGCTGGAGAACAGCGGGGTCCTGAACCGCATCAAG|AGTCACCTCTACTTTCCTGCTACCGCTGCCTGTGAGCTGAAGGGGCTGAACCATACACTCCTTTTTCTACAACCAGCTTGCATTTTTTCTGCCCACAATGAGCGGGGTAAGATTTTTATTTTTGGC 14 0.968128258841496 0.375439841389168 0.70932366293733 Y Y 3.63655728995158 3.37758638046158 3.37758638046158 0 0.9920907652866422 0.0 Y 0.0 N Y 629 1332 ENSG00000213066 ENSG00000112486 + - 6 6 167455906 167553184 coding utr5p FGFR1OP CCR6 167412670 167525295 + + 0.0 167413002 167549526 + - N 1.22635727368753 0.0214941380733418 N SA539 1 0.0 1.0 1 0 2 N Y 0.0 0.0 10 1.77425854740822 1.16867329470003 1.77425854740822 1.16867329470003 4 6 0 0.976553598701468 HCT116-stranded CGHSA0270 1.0 532371 CGGCGCCTGGCGCTTTCCTCACGGTCTGGGCTTGAGAGGAAGCCGGAGTCCTTGTCTAAAGTCAGCATCATCAAGAGACTGGGCGCAGCTGCCCTTGTGCCCGAGGCCCAGGACAGCCAGGTCACCAGCACCAAGA|GTGAATACATCAAGACCTGGAGGCCACGGTACTTCCTGCTGAAGAGCGACGGCTCCTTCATTGGGTACAAGGAGAGGCCCGAGGCCCCTGATCAGACTCTACCCCCCTTAAACAACTTCTCCGTAGCAGAATGCCAGCTGATGAAGACCGAGAGGCCGCGACCCAACACCTTTG 4 0.7133971866411429 0.9849184257089648 0.802734756167278 N Y 3.19293127328835 3.90657048781565 3.19293127328835 1 0.0 0.0 Y 0.00321543408360137 N Y 1148 4848 ENSG00000160392 ENSG00000105221 + - 19 19 40854434 40791443 coding coding C19orf47 AKT2 40825443 40736224 - - 0.0 40827935 40762961 - + N - - N SA539 1 0.0 1.0 1 0 1 Y N 0.0 0.0 5 1.16867329470003 0.977435846476387 1.16867329470003 0.977435846476387 4 - - 0.956690033140321 HCT116-stranded 1.0 78978 GATGTTCAAACACCTGGTACACAAACCATCGGAGGAGAGAGTAAGAGAAATAATTATCAATGCTGTTCGGATAGAACAGGAGTTCCTCACTGAGGCCTTGCCTGTGAAGCTCATTGGGATGAATTGCACTCTAATGAAGCAATACATTGAGTTTGTGGCAGACAGACTTATGCTGGAACTGGGTTTTAGCAAGGT|GCTGGGAGACCGTGAAGTGCAAAGCAGATGGAGTCCAGGCCCTCGGGGAGACAGCACGCCAGTGAGGGAGATGGAGACCAATCACCCACCCAGTGTGCGGGGATGAGAAGCTCGGGAAGGTCTGACCAGCCTTA 80 1.0 0.863042841795558 0.7148876552737671 Y Y 3.51360402781852 3.44040523365767 3.44040523365767 1 0.992559927634554 0.0 Y 0.583355947535052 N Y 41069 963 ENSG00000171848 ENSG00000163009 + - 2 2 10271545 10351851 coding utr5p RRM2 C2orf48 10262455 10281509 + + 0.0 10269281 10281981 + - N - - N SA539 2 0.7372262773722629 1.62222222222222 1 28 2 N Y 0.0 0.7372262773722629 45 1.97612029831096 1.45552946703549 1.97612029831096 1.45552946703549 4 - - 0.934282303041024 HCT116-stranded CGHSA0554 1.0 292451 TTGAACGTAGTAGAGCAGGTGCGGGTTCAGGTTAGCGACCCCGAGAGTACAGTGGCTGTGGCTTTCACACCAACCATTCCGCACTGCAGCATGGCCACCCTTATTGGTCTGTCCATCAAGGTCAAGCTTCTGCGCTCCCTTCCTCAGCGTTTCAAGA|CGGTCCCGGACGCGATGACCCTGAACGGCGGCGGCAGCGGAGCGGGCGGGAGCCGCGGTGGGGGCCAGGAGCGCGAGCGCCGTCGGGGCAGCACACCCTGGGGCCCCGCCCCGCCGCTGCACCGCCGCAGCATGCCGGTGGACGAGCGCGACCTGC 4 0.403444994947695 0.7767388020141651 0.7805420035292908 Y Y 3.38912318237562 3.2739892081275896 3.2739892081275896 0 0.993610158419076 0.0 Y 0.9808304752572272 N Y 3737 229 ENSG00000166595 ENSG00000166592 + - 16 16 66968326 66959547 coding utr5p FAM96B RRAD 66965959 66955582 - - 0.0 66967517 66959097 - + N - - N SA539 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 5 1.4980266777518505 1.50865098043095 1.50865098043095 1.4980266777518505 4 - - 0.9094282179181592 HCT116-stranded CGHSA0477 1.0 179220 GTTCATCAGAAATGTATGTTTAGGAAAGGTTTCATGTAATACCACCAAGGTGGGTGCTGTCAATAGTCCCCAAGCAAAAAACTCCAAAAAGATGACGATAACTGCATGATAGACACTAGGAGAACCTATTCCTTGAGGC|TGAAGAACAACTACTATCCAGGTCAGTCGGTTATATCCCTGAAAAAATCCATTCTTTGATACCAGTTCTCCATCATAAATGTATACACCCATTAATCCAAATATACTTCCAAAGAAAC 16 0.6885983956469279 0.4416070947184829 0.50501572795241 N Y 3.6988816296077 3.73233517440054 3.6988816296077 1 0.0 0.0 Y 0.012317698068585 N Y 4733 2056 ENSG00000156875 ENSG00000117620 - + 1 1 100548933 100492535 coding coding HIAT1 SLC35A3 100503653 100435345 + + 0.0 100515465 100480976 - + N - 0.737201480161468 N SA539 1 0.0 1.0 1 0 1 Y N 0.0 0.0 7 0.988060149155478 0.8818171223645671 0.988060149155478 0.8818171223645671 4 - 10.4285714285714 0.970796130034366 HCT116-stranded 1.0 411758 GGGAGGCGGCCGCCGTGCCATTCTTAAAGGCGCCCGAGTGTAGGCGACAGGCCGCTGACGGCCGGAAGGAAAATGAGTGAGTCTTTGGTTGTTTGTGATGTTGCCGAAGATTTAGTGGAAAAGCTGAGAAAGTTTCGTTTTCGCAAAGAAACGAACAACGCTGCTATTATAA|GTATATGAGTAGACCAGTGATGAGTGGCCCAGGACTCTATGACCCTACAACCATCATGAATGCAGATATTCTAGCATATTGTCAGAAGGAAGGATGGTGCAAATTAGCTTTTTATCTTCTAGCATTTTTTTAC 10 0.536089286401841 0.4246869840336239 0.589521415039713 N Y 3.41319935075004 3.47758982994594 3.41319935075004 1 0.0 0.0 Y 0.0 N Y 6086 9208 ENSG00000197045 ENSG00000100528 + - 14 14 54955914 54908149 coding coding GMFB CNIH 54941202 54893654 - - 0.0 54950389 54897122 - + N - 2.54441588030037 N SA539 1 0.0 1.0 1 0 1 N N 0.0 0.0 8 1.77425854740822 1.2005462027373002 1.77425854740822 1.2005462027373002 4 - 83.875 0.948107906315592 HCT116-stranded 1.0 180377 CAAGGCAGAAGAAATCTTGGAGAAGGGTCTAAAGGTGCGGGAGTATGAGTTAAGAAAAAACAACTTCTCAGATACTGGAAACTTTGGTTTTGGGATCCAGGAACACATCGATCTGGGTATCAAATATGACCCAAGCATTGGTATCTACGGCCTGGACTTCTATGTG|CTATTGAAATATTTGAAGAAACTCTCCACCCTGCCTATTACAGTAGACATTCTTGCGGAGACTGGGGTTGGGAAAACAGTAAATAGCTTGCGAAAACACGAGCATGTTGGAAGCTTTGCCAGGGACCTAGTGGCCCAGTGGAAGAAGCTGGTTCCT 118 1.0 0.9816160144948708 0.397103056301577 N Y 3.80041266240192 3.32320511986986 3.32320511986986 0 0.993609589584822 0.0 Y 0.993609589584822 N Y 35987 16053 ENSG00000142676 ENSG00000011007 + - 1 1 24022915 24088549 coding coding RPL11 TCEB3 24018269 24069645 + + 0.0 24021281 24075511 + - N - - N SA539 4 0.0 2.12162162162162 1 54 1 Y N 0.0 0.0 74 1.69988842865459 1.6892641259755 1.69988842865459 1.6892641259755 4 - - 0.9008728406311708 HCT116-stranded CGHSA0320 1.0 1850 CCTCTTCAACATCATCATCATTTTCCTCATGTTCTTCAACACCTTCGTCTTCCAGGCTGGCCTGGTCAACCTCCTATTCCATAAGTTCAAAGGGACCATCATCCTGACAGCTGTGTACTTTGCCCTCAGCATCTCCCTTCATGTCTGGGTCATG|GTGTCCTGCTACCATATCCAACAGCTAACCTAGTACTGGATGTGGTGATGCTCCTCCTTTATCTTGGAATTGAAGTAATTCGCCTGTTTTTTGGTACAAAGGGAAACCTCTGCCAGCGAAA 11 0.71083650059757 0.469271548448768 0.6961499079524991 Y Y 3.23999710710482 3.65760879692984 3.23999710710482 0 0.0 0.0 Y 0.0 N Y 2541 879 ENSG00000149483 ENSG00000187049 + - 11 11 61136683 61166335 coding coding TMEM138 TMEM216 61129473 61159159 + + 0.0 61133688 61161356 + - N - - N SA539 1 0.0 1.0 1 0 1 N Y 0.0 0.0 9 1.63614261258004 1.06243026790912 1.63614261258004 1.06243026790912 4 - - 0.957124620625298 HCT116-stranded 1.0 548638 CTTCAAGAAGAATTTCTTTCCTACGTTTAATGGCATGAAGCCAGTTCCCTTCATCGTTGTCAACTACATCCTTCTCATCAGCAGCTTCAGCTTCAAACTGCTGGGAAGTGACCTTTGAGACCTTCTCACCAATTTTCCTCTTCCACCCAAAGGAAGCCATT|CATCAATACTACGGAAATCCAGTAGATAAGTTCTACTATCCACTTGGTATAACTGTAGACTCATTTTGGAGTAAGTGCTTGTCACAGGATTCTTCCTTCGTACACGCAAATAATATGGGT 10 1.0 0.8760395620572099 0.812295308888744 Y Y 3.20720590972129 3.53721618787652 3.20720590972129 0 0.99169621749409 0.0 Y 0.0 N Y 728 2365 ENSG00000113638 ENSG00000132356 - + 5 5 40756077 40798476 utr5p coding TTC33 PRKAA1 40714577 40759481 - - 0.0 40747121 40764616 + - N 7.05487641800077 2.15416795356631 N SA539 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 5 1.58302109918458 0.9668115437972958 1.58302109918458 0.9668115437972958 4 2.2 8.6 0.973351433964608 HCT116-stranded 1.0 531303 ATCATGCAGGCCCGATCTGCCCACCGTGACTGTGAGGACGTGGCCAAGGCCGCCCTGCGGGACCTGGGTTGTCATGTCGAGCTCCGAGAGCTGTGGACAGGCCAGAGGGGCAACCTGGCGCCATGACCCCAGGCCCAGTCTGGGCCGTGACTCTGGG|ACCGAGTCTCCTGCCATTCCGAGCAGGCCTGGTATGGGTAATGGTGTGAAGGAAGGCCCGGTGCGATTGCATGAGGATGCTGAGGCTGTCCTGTCCTCGTCCGTCTCATCAAAGCGTGACCACAGGCAAGTGCTC 7 1.0 0.346557591509044 0.17183290706637602 Y Y 3.3619172994679904 3.7423443930047298 3.3619172994679904 1 0.0 0.0 Y 0.0 N Y 2710 479 ENSG00000105676 ENSG00000181035 + - 19 19 19170563 19223704 utr3p utr5p ARMC6 SLC25A42 19144384 19174803 + + 0.0 19168467 19206900 + - N - - N SA539 1 0.0 1.0 1 0 1 N Y 0.0 0.0 6 1.3811593482818505 1.07305457058821 1.3811593482818505 1.07305457058821 4 - - 0.9640983023807852 HCT116-stranded 1.0 103466 GAAAGTGTATAACTACAATCACCTAATGCCCACAAGGTACTCTGTGGATATCCCCTTGGACAAAACTGTCGTCAATAAGGATGTCTTCAGAGATCCTGCTCTTAAACGCAAGGCCCGACGGGAGGCCAAGGTCAAGTTTGAAGAGAG|GCCCTCCACGCCCTTCAGGAGGAGCAGGCCAGACTCAAGATGAGGCTGTGGGACCTGCAGCAGCTGAGAAAGGAGCTCGGGGACTCCCCCAAAGACAAGGTCCCATTTTCAGTGCCCAAGATCCCCCTGGTATTCCGAGGACACACCCAGCAGGACCCGGAAGTGCCTAAGTCTTTAGTTTCCAATT 100 1.0 0.817394383715958 0.548117722482558 Y Y 3.2693225627147204 3.28655907981151 3.2693225627147204 0 0.0 0.0 Y 0.0 N Y 32180 1199 ENSG00000131469 ENSG00000068079 + - 17 17 41154976 41166473 coding coding RPL27 IFI35 41150290 41158742 + + 0.0 41154800 41164196 + - N - - N SA539 5 0.0 1.78 1 26 1 N Y 0.0 0.0 50 1.5617724938264 2.01861750902732 2.01861750902732 1.5617724938264 4 - - 0.9168746221146552 HCT116-stranded 1.0 412216 AACCTGAGCTCTTCGCTTATCCCCTGGATTGGTCTATTGTGGATTCTATACTGATGGAACGTCGAATTAGACCATGGATTAATAAGAAAATCATAGAATATATAGGTGAAGAAGAAGCTACATTAGTTGATTTTGTTTGTTCTAAGGTTATGGCTCATAGTTCACCCCAGAGCATTTTAGATGATGTTGCCAT|GACCTAATCTGGGAGCCTGCAAGTGACAACAGCCTTTGCGGTCCTTAGACAGCTTGGCCTGGAGGAGAACACATGAAAGAAAGAACCTCAAGAGGCTTTGTTTTCTGTGAAACAGTATTTCTATACAGTTGCTCCAATGACAGAGTTAC 12 0.647443578426288 0.949890909119348 0.725011667287086 Y Y 3.4378445805779303 3.66745018166468 3.4378445805779303 0 0.0 0.0 Y 0.00291545189504372 N Y 20901 3216 ENSG00000119707 ENSG00000080815 + - 14 14 73588122 73690399 coding utr5p RBM25 PSEN1 73525144 73603126 + + 0.0 73581041 73614503 + - N - - N SA539 1 0.0 1.0 1 0 2 N Y 0.0 0.0 7 1.7423856393709498 1.59364540186367 1.7423856393709498 1.59364540186367 4 - - 0.968878096083988 HCT116-stranded 1.0 412214 CTGATGGAACGTCGAATTAGACCATGGATTAATAAGAAAATCATAGAATATATAGGTGAAGAAGAAGCTACATTAGTTGATTTTGTTTGTTCTAAGGTTATGGCTCATAGTTCACCCCAGAGCATTTTAGATGATGTTGCCATG|AATGACAATAGAGAACGGCAGGAGCACAACGACAGACGGAGCCTTGGCCACCCTGAGCCATTATCTAATGGACGACCCCAGGGTAACTCCCGGCAGGTGGTGGAGCAAGATGAGGAAGAAGATGAGGAGCTGACATTGAAATATGGCGCCA 29 1.0 0.7105165657783951 0.826666324340942 Y Y 3.35463656781289 3.23693259291531 3.23693259291531 3 0.0 0.0 Y 0.0 N Y 20901 3216 ENSG00000119707 ENSG00000080815 + - 14 14 73588122 73690399 coding coding RBM25 PSEN1 73525144 73603126 + + 0.0 73581041 73637505 + - N - - N SA539 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 9 1.40240795364003 1.4980266777518505 1.4980266777518505 1.40240795364003 4 - - 0.973052818801906 HCT116-stranded 1.0 379920 TGCTCTTCTGACAGCATCATTTACAGGTTCACACTGTTCCACCTGAGTCTTCATATTATGCTCAAAATATGGACCTATCAGAAAATAGTTCTCTCCCCATTCATCTGCTGTTGTTTTGGCCTTTGTCTGAATCACAGTATAGATGCCTCCAA|CTTAGCCTGAAATATAAGTTGATGTTTTTTCTCCAAGTTGTTGTCATCCGTTGACTTTGCTTGTGTTATGTTTTCAGGTAAGAAGTTCTCTTTTTCAGTGGTTAAATTGAACCAATCCTTTCTTTAATGGCTCTAGATATGG 12 1.0 0.807599219261634 0.638873707119556 Y Y 3.69937614314766 3.39065076568547 3.39065076568547 0 0.0 0.0174265934590596 Y 0.0174265934590596 N N 728 81510 ENSG00000111713 ENSG00000111716 - + 12 12 21757781 21910791 coding downstream GYS2 LDHB 21689123 21788276 - - 0.0 21733457 21783595 + - N - - N SA539 1 0.0 1.0 1 0 1 N Y 0.0 0.0 7 1.65739121793822 1.3917836509609398 1.65739121793822 1.3917836509609398 4 - - 0.986808835342605 HCT116-stranded 1.0 463176 TCCAAGAGGTGGTGGCAGGGGAGGCCGAGGAGGAGGAAGAGGAGGAGGTGGCAGAGGTGGTGGCAGAGGCGGTGGTTTTAGAGGTGGAAGAGGAGGTGGAGGTGGGGGCTTCAGAGGAGGAAGAGGTGGTGGTTTCAGAGG|TATGATAAGTATTATCAGCAACATAATAGTTCTGGGCATCTTCATTAAGTACAAGGAACTTCGGACACCCACAAATGCAATTATTATTAACCTGGCTGTTACTGATATAGGGGTCAGTAGCATTGGCTATCCCATGTCTG 11 1.0 0.7832556743228031 0.626249679394298 Y Y 2.98098634482147 3.4722913423473 2.98098634482147 1 0.0 0.0 Y 0.0 N Y 3068 232 ENSG00000109534 ENSG00000180245 + - 4 4 110745893 110765760 coding coding GAR1 RRH 110736666 110749150 + + 0.0 110745189 110754295 + - N - 0.0749185471407694 N SA539 2 0.46 1.14285714285714 1 1 1 Y Y 0.46 0.0 7 1.06243026790912 1.4980266777518505 1.4980266777518505 1.06243026790912 4 - 0 0.950618490226475 HCT116-stranded 1.0 379364 CTCCTGGTCTGAAACGCAAGGTTTGGCAATCTCAAAAAGTACTGTCCCTGTCTCCAAATCTCGAATTTTGAAGCGGGTGAAATCAATACTGTAGATGTTGTCTTCGGGTTTACATAAATAAT|CGGCAGAGGCAGAAGAGGGTTGGAATGAAGACTCCGAAGGCCACCAGGATGGGAAACATGAGGCTGCTGTTGTCCGAGGCATAGGGGTTGGGTGTGCGGGGGCCTGACTGCACCCGGTTCTTATTGGTCTGTTTTTTGAGATTAGACCCTTCATCATATTCTTCTTCTTCTTCTTCCTC 6 1.0 0.420020368556852 0.420897232741614 Y Y 3.43681151080804 3.43417115214159 3.43417115214159 0 0.0 0.0 Y 0.0 N N 3676 25988 ENSG00000175970 ENSG00000110917 - + 12 12 121161443 121139667 coding coding UNC119B MLEC 121148238 121124672 + + 0.0 121151077 121134341 - + N - 0.685577223545294 N SA539 1 0.117977528089888 1.0 1 0 1 Y Y 0.0 0.117977528089888 9 1.12617608398366 1.89112587687823 1.89112587687823 1.12617608398366 4 - 95.2222222222222 0.9823035871124772 HCT116-stranded 1.0 313919 CGCCGCCGCGGAGCGGAGTCGAGCCGAGCTGATTTGATCGAGGAGCGCGGTTACCGGACGGGCTGGGTCTATGGTCGCTCCGCGGGCCGCTCCGCCGGCTGGTGCTTTTTTATCAGGGCAAGCTGTGTTCCATGGCAGGGAACTTTTGGCAGAGCTCCCACTA|GGACCACCAAGCTCACCGCAGAGCGCAGCCTCCGCGGACCCGAGGACCGCCCTGCGCGCAGTCTCGAGCAGCAACCAGGGTAGCACCATTGCGGGCCGGCGGCCGCCGCGCTAGTGACCACTTCCTCCTACTCCTTCTCCTCCT 12 0.6869962128596669 0.6886851146287081 0.8040845588929929 Y Y 3.6025651889288097 3.30119509103522 3.30119509103522 1 0.993078102453102 0.0 Y 0.0 N Y 4825 1046 ENSG00000112237 ENSG00000123552 + - 6 6 100016849 99969604 coding utr5p CCNC USP45 99990256 99880190 - - 0.0 100016372 99969039 - + N - - N SA539 1 0.179487179487179 1.0 1 0 1 N Y 0.0 0.179487179487179 6 1.35991074292367 1.24304341345367 1.35991074292367 1.24304341345367 4 - - 0.9329274883265772 HCT116-stranded 1.0 178866 GGCCTCCGGGATCTTCTGTTCTGAGCCCTCATCCTCAGTTGCCTTCTTCTCCGGGGAGCGGTAAATGCACATGGGATTCATGGGAATGTCCCGCGGCTTGGCTGTGCAGATGTCCACAGGGCTCCCGTGACAGGTCACGCAGTCCCAGAAGCCAATGAGCAGCAAGGACAAAAGATAAACCTTCCTG|AATGTCAATGTAAGGTCCTCAGCCGGAACCTTGTTTTGTGGTTCTGGTTGTCCATTTTCTGCTTGTTTACTTGTATTCAGTTTGCTTTTCATGTCCAGAGAACACTGGTTTTCCTTTGAAAGAGA 20 0.610804503488657 0.7604393215269241 0.848426792838848 N Y 3.45976132345673 3.72721386824106 3.45976132345673 0 0.0 0.0 Y 0.0 N Y 125 3902 ENSG00000117601 ENSG00000135870 - + 1 1 173886516 173991435 intron coding SERPINC1 RC3H1 173872947 173900352 - - 0.0 173884057 173910403 + - N 11.248149749485 0.98554241517028 N SA539 1 0.0 1.0 1 0 1 N N 0.0 0.0 9 1.48740237507276 1.21117050541639 1.48740237507276 1.21117050541639 4 0.111111111111111 5.77777777777778 0.9333943285452552 HCT116-stranded 1.0 179967 CCCTCTGGCTTTTTAAGGACCCCTGTGCCGCCCCCAACGAAGGCTTCTGCTCCGCCGGAGTCCAAACGGAGGCTGGAGTGGCTGACCTCACTTGGGTTGGGGAGAGAGGTATTCTAGTGGCCTCCGATTCA|GGTGCTGCCCATAAACTCGTGTGTTATTTCACCAACTGGGCACACAGTCGGCCAGGCCCTGCCTCGATCTTGCCCCATGACCTGGACCCCTTTCTCTGCACCCACCTGATATTTGCCTTTGCCTCAATGAACAACAATCAGATTGTTGCTAAGGATC 36 1.0 0.9699252791771692 0.426439983238212 N Y 3.53039946453785 3.46448140203209 3.46448140203209 0 0.992392826012309 0.0 Y 0.0 N Y 4117 2424 ENSG00000116455 ENSG00000085465 + - 1 1 111991998 111970399 coding coding WDR77 OVGP1 111982512 111956936 - - 0.0 111991241 111969263 - + N - - N SA539 1 0.0 1.0 1 0 2 Y N 0.0 0.0 24 1.2961649268491202 1.7423856393709498 1.7423856393709498 1.2961649268491202 4 - - 0.988984885055609 HCT116-stranded CGHSA0371 1.0 179968 TCCTCAGCAAAGTGAAGTCTTTGTCTTTGGTGATGAGAATGGGACAGTCTCCCTTGTGGACACCAAGAGTACAAGCTGTGTCCTGAGCTCAGCTGTACACTCCCAGTGTGTCACTGGGCTGGTGTTCTCCCCACACAG|GGCTGGTTCTTGTGCTGAAACACCACGATGGTGCTGCCCATAAACTCGTGTGTTATTTCACCAACTGGGCACACAGTCGGCCAGGCCCTGCCTCGATCTTGCCCCATGACCTGGACCCCTTTCTCTGCACCCACCTGATATTTGCCTTTGCCTCAATGAACAACAATCAGATTGTT 19 0.624432146173848 0.860763415489552 0.714367681406964 N Y 3.1459146398350497 3.4586884008934904 3.1459146398350497 0 0.992776627559236 0.0 Y 0.0 N Y 4117 2424 ENSG00000116455 ENSG00000085465 + - 1 1 111991998 111970399 coding coding WDR77 OVGP1 111982512 111956936 - - 0.0 111985275 111969713 - + N - - N SA539 1 0.0 1.0 1 0 2 Y N 0.0 0.0 22 1.3917836509609398 1.63614261258004 1.63614261258004 1.3917836509609398 4 - - 0.949892646961607 HCT116-stranded CGHSA0371 1.0 1844 GCAGCATGAGCAGTGCAGGCCCAAGACCACTACCCAGTGGCCCAGCATCCCCCAAACGCAAGCTGGAAGCAGCCGAGGAACCACCTGGTGAAGAACTCAGCAAACGGGCCCGGGTGGCAGAGTTGCCAACCCCAGAGCTGCCGAGCAAGGATGCCTGAGA|GCTCACCCATGACATCAGCCTGGAGGAGTTTGAGGATGAAGACCTCTCGGAGATCACTGATGAGTGTGGCATCAGCTTACAGTGCAAAGACACCCTGTCCTTACGGCCCCCGCGCGCCGGGC 12 1.0 0.654314799678954 0.6745047816559679 Y Y 3.42953077915294 3.5010341561346 3.42953077915294 0 0.0 0.0 Y 0.0 N Y 286 574 ENSG00000121671 ENSG00000121653 + - 11 11 45904798 45928016 utr3p coding CRY2 MAPK8IP1 45868669 45907202 + + 0.0 45893784 45919636 + - N - - N SA539 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 5 1.3917836509609398 1.05180596523003 1.3917836509609398 1.05180596523003 4 - - 0.9842113913190172 HCT116-stranded 1.0 548566 CCCAGAGTCTTTTAGTCCTGCTATACAGCTGCACCTTGTACATCAAGCTCCATGTAATGTTCCTCCTTACCTCTCAAAGAATGAATCAAACCTTGGGGACCTCTTACTGGGCTTTCTTAAATATTATGCTACAGAATTTGA|ACAGATGTAAGCCAGTCAGTAGCTGGGCTTCATCTTGCATATTCCTAGGAGGAAATATGTTTATGAAGTGATGGCAAACGCGGCTGCTGCATTGGTCAGGAATGATAACCGCAGAGGAATTTAAACCCAGCCTTA 15 0.7468489514953299 0.5584171804321421 0.418281363406882 Y Y 3.2668017624283303 3.63721963736088 3.2668017624283303 1 0.0 0.0 Y 0.0 N N 1466 4729 ENSG00000164329 ENSG00000164309 + - 5 5 78982471 79096063 coding intron PAPD4 CMYA5 78907943 78985700 + + 0.0 78964851 79023365 + - N - 0.0197822782316482 N SA539 1 0.0 1.0 1 0 1 N Y 0.0 0.0 6 1.10492747862548 1.26429201881185 1.26429201881185 1.10492747862548 4 - 0.333333333333333 0.963533304612653 HCT116-stranded 1.0 454393 GGTGTTTCACAAGAGGACTTTCTACGGAGGAACCAAGATAAAAATGTGAGAGATGTAATATATGACATTGCCAGTCAAGCACACTTGCACCTAAAGCAT|GCTATTAGTGAAAGATGGTGGATCGCTTGGCAAACAGTGAAGCAAATACTAGACGTATAAGTATAGTGGAAAACTGTTTTGGAGCAGCTGGTCAACCTTTAACTATACCTGGACGAGTTCTTATTGGAGAAGGAGTATTGACTAAGTTGTGCAGGA 25 0.336363670955819 0.9366529923727758 0.4983244269686311 Y Y 3.5303596117444904 3.64553343878587 3.5303596117444904 0 0.0 0.0 Y 0.0 N Y 759 2606 ENSG00000156170 ENSG00000175895 + - 8 8 96128683 96168912 coding utr5p NDUFAF6 PLEKHF2 95907995 96146032 + + 0.0 96060786 96166259 + - N - - N SA539 1 0.0 1.0 1 0 1 N Y 0.0 0.0 11 1.72113703401277 1.64676691525913 1.72113703401277 1.64676691525913 4 - - 0.9565045056685452 HCT116-stranded 1.0 321581 AACCAATGCGTCCGTCATTATTGAACAGCTCATGATATTCCTGCTCAGCAGAATTGCACAGCAGTTGTTGGTAGCAAGTCAAGTCCCAGACTCTGAGAGTGTGACAGATTGCCCCCACAGCGCTGCTTCTCCAGTGCTGGGGCAGCATGCCGAGTGCCCCTGTTCGTGGTGACTGACC|GTTGGAAATGGTCACACATTCCTTCTCCCCTTAGAGCGAACACTGTCATAACCACTGAAGCGCGGGCCGAGGAGCGCCACATCGGCCACAGGCTTTGTTGCCCCGCCTTCAAAGCCACTGCGCGTG 16 0.8100681800725749 0.40622415888043 0.37187855322658897 Y Y 3.5010341561346 3.7574444125448494 3.5010341561346 1 0.992089513400989 0.0 Y 0.0 N Y 271 599 ENSG00000147119 ENSG00000230844 - + X X 46457843 46407671 intron intron CHST7 ZNF674-AS1 46433219 46404928 + + 0.0 46457195 46405062 - + N - 0.595863332278147 N SA539 1 0.0 1.0 1 0 2 N Y 0.0 0.0 13 1.73176133669186 1.18992190005821 1.73176133669186 1.18992190005821 4 - 4.07692307692308 0.985461411988131 HCT116-stranded 1.0 532320 CCCAGATCCTGCTGAAGGCCCTCACCAACTTGCCGCACACAGACTTCACCCTGTGCAAGTGCATGATCGACCAGGCACATCAAGAAGAACGGCCAATCCGACAGATTTTGTACCTCGGGGACCTGCTGGAGACCTGCCATTTCCAGGCCTTCTGG|ACCTTCACGGCATGGTGCAACTCCCACCTGCGGAAGGCAGGCACACAGATCGAGAACATTGATGAGGACTTCCGAGACGGGCTCAAGCTCATGCTGCTCCTGGAGGTCATATCAGGGGAGCGGTTACCTAAGCCGGAGC 19 1.0 0.40071025101867697 0.19265405116724 Y Y 3.41592783769912 3.6659225983548303 3.41592783769912 0 0.992830142665529 0.0 Y 0.0 N Y 9099 48041 ENSG00000178982 ENSG00000130402 + - 19 19 39127595 39222223 coding coding EIF3K ACTN4 39109735 39138289 + + 0.0 39116742 39191240 + - N - - N SA539 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 10 1.57239679650549 1.2961649268491202 1.57239679650549 1.2961649268491202 4 - - 0.9723564984048372 HCT116-stranded 1.0 103222 GGGGGCCAGGTGGGTTGGGGGATGTCTCAAGAGCCGGTCCTTTGGTCAAGCAGTTCTGTGAGCTGGCACTTTTCCTGGGAAGGTCCAGAGCTGGCCTTCAGGGCACCAAAAAAGATGCCACTCCTAGATGGGCCCCAGCTAGGTGGCTGAGGGGGCCATGTCCTGTGATG|CTTCCCCAGAGTGACCTCTTTGATTTTCAACTGCCTGATCAAGAGCATCAAAGAGCAAACCAAGATCTTCTGCTGAAGAGGGAAGGAATCTTGTGCTCCTTCTTGGCTCAAGGTCATCCTGTTACCATCAACTTCTGAGATGACTTGGGATAT 22 0.582916611444603 0.9780593300286128 0.8023259526821579 Y Y 3.25360004855864 3.35038049755395 3.25360004855864 0 0.0 0.0 Y 0.0 N Y 3145 2353 ENSG00000131759 ENSG00000094804 - + 17 17 38513094 38459171 utr5p coding RARA CDC6 38465444 38443885 + + 0.0 38487109 38457282 - + N - 3.67996819230865 N SA539 1 0.0 1.0 1 0 4 N Y 0.0 0.0 9 1.27491632149094 1.64676691525913 1.64676691525913 1.27491632149094 4 - 16.7777777777778 0.957779576289066 HCT116-stranded 1.0 103221 CCCCCACCCTAGCTGGGGGCCAGGTGGGTTGGGGGATGTCTCAAGAGCCGGTCCTTTGGTCAAGCAGTTCTGTGAGCTGGCACTTTTCCTGGGAAGGTCCAGAGCTGGCCTTCAGGGCACCAAAAAAGATGCCACTCCTAGATGGGCCCCAGCTAGGTGGCTGAGGGGGCCATGTCCTGTGATG|CTTTGTCAAACGGGTTTCCTTGTTTCTCTTTAATCCTAAAATGCCCCTGGCTTCCAAGAGCCCTGAAAGTGACAAACACTCTGACTGGTCCACAGCCGCCACCTGCTGTTTGCGACAGACTTTACTGTAGG 13 1.0 0.694945818031407 0.5090243743112179 Y Y 3.25360004855864 3.0460044763065297 3.0460044763065297 0 0.0 0.0 Y 0.0 N Y 3145 2353 ENSG00000131759 ENSG00000094804 - + 17 17 38513094 38459171 utr5p coding RARA CDC6 38465444 38443885 + + 0.0 38487109 38457860 - + N - 4.74544105733772 N SA539 1 0.0 1.0 1 0 4 N Y 0.0 0.0 10 1.93362308759459 1.21117050541639 1.93362308759459 1.21117050541639 4 - 8.6 0.982290812125352 HCT116-stranded 1.0 101547 CTACCAGTTATATGAAGCCTACAGTAAAGTCTGTCGCAAACAGCAGGTGGCGGCTGTGGACCAGTCAGAGTGTTTGTCACTTTCAGGGCTCTTGGAAGCCAGGGGCATTTTAGGATTAAAGAGAAACAAGGAAACCCGTTTGACAAAG|GTCATCCTATCCTCGAGTTATCCATATGCTGTGTATTTGAGACAGGGAACTGTTCCTGTCCCCAGCCGATGACCAGACGCCCATCTTTCTTCCAGTGGGTTACTTCTCCCCCATCAGTCCTTCGCTCTGCGCCCG 2 0.8327038542648579 0.714189761916417 0.904607321805807 Y Y 3.0460044763065297 3.44143830342756 3.0460044763065297 0 0.0 0.0 Y 0.0 N N 2353 3145 ENSG00000094804 ENSG00000131759 + - 17 17 38459171 38513094 coding upstream CDC6 RARA 38443885 38465444 + + 0.0 38457860 38465204 + - N 4.74544105733772 - N SA539 1 0.0 1.0 1 0 4 N Y 0.0 0.0 5 0.934938635760023 1.27491632149094 1.27491632149094 0.934938635760023 4 17.2 - 0.970797022608385 HCT116-stranded 1.0 102444 CAGATAGTCACTATTTTGCAAGATCGACTTAATCAGGTATCTAGAGATCAGGTTCTGGACAATGCTGCAGTTCAATTCTGTGCCCGCAAAGTCTCTGCTGTTTCAGGAGATGTTCGCAAAGCACTGGATGTTTGCA|GCATCACAGGACATGGCCCCCTCAGCCACCTAGCTGGGGCCCATCTAGGAGTGGCATCTTTTTTGGTGCCCTGAAGGCCAGCTCTGGACCTTCCCAGGAAAAGTGCCAGCTCACAGAACTGCTTGACCAAAGGACCGGCTCTTGAGACATCCCCCAACC 36 1.0 0.926062381682609 0.75425666155036 Y Y 3.4780843434859 3.25360004855864 3.25360004855864 0 0.0 0.0 Y 0.0180345786963433 N Y 2353 3145 ENSG00000094804 ENSG00000131759 + - 17 17 38459171 38513094 coding utr5p CDC6 RARA 38443885 38465444 + + 0.0 38451708 38487109 + - N - - N SA539 1 0.0 1.0 1 0 4 N Y 0.0 0.0 22 1.3917836509609398 1.75300994205004 1.75300994205004 1.3917836509609398 4 - - 0.971093995489858 HCT116-stranded 1.0 450162 GAAGGATTTGGACAAGAGTAACTTCTGAGAACTTGCACCATGAATGGGCAAGAACTTATTTGCAATGTTTGTCCTTCTCTGCCTGTTGCACATCTTGTAAAATTGGACAATGGCTCTTTAGAGAGTTATCTGAGT|ACACTCCTGGAAGGAGAACCAAATCCTTCCTCACTGAAGAGCAGCTACTGTGGAATGAAACTTTGGAGTTAGATCATCGTTGAATCCAGCAAGCTACAGTGCCTGGGAGAAACAGCATTTATAAAGTATCGAGGT 11 1.0 0.7190605476406141 0.503470128244239 Y Y 3.56488607910057 3.38759559906577 3.38759559906577 0 0.0 0.0 Y 0.0 N N 1017 4511 ENSG00000078747 ENSG00000125971 + - 20 20 33099198 33128762 utr3p upstream ITCH DYNLRB1 32951041 33104214 + + 0.0 33095713 33102984 + - N 2.45266502513255 - N SA539 1 0.0 1.0 1 0 1 N Y 0.0 0.0 5 1.09430317594639 1.16867329470003 1.16867329470003 1.09430317594639 4 2.6 - 0.9821311586630672 HCT116-stranded 1.0 990 CTTTTTGTAATTGATGCTTTGTATTCAGATAATATAAGCAAGGAAAACTGTGTTTTCAGAAGCTCACTGATTGGCATAGTTTGTGGTGTTTTCTATCCCAGTTCTTTGGCTTTTACTAAAAATGGACGCCTGGCAACCAA|GAATCTACTTGAAAATGGATCGGTTTATGTTGGATTAAATGCTGCTCTTTGTGGCCTCATAGCAAACAGTCTTTTTCGACGCATCTTGAATGTGACAAAGGCTCGCATAGCTGCTGGCTTACCAATGGCAGGGATACCTTTTCT 23 0.8854566598539741 0.8070534740546741 0.5914393206101739 Y Y 3.48639814491089 3.2629469197535097 3.2629469197535097 0 0.0 0.00350877192982468 Y 0.00350877192982468 N Y 2050 1233 ENSG00000171204 ENSG00000171202 + - 11 11 85347580 85367591 coding coding TMEM126B TMEM126A 85339629 85359011 + + 0.0 85346822 85365107 + - N - - N SA539 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 11 1.23241911077458 1.81675575812459 1.81675575812459 1.23241911077458 4 - - 0.987393572901182 HCT116-stranded 1.0 348651 GCAGTACTTCCAGAGGACCTTGGCAGGAACTGTGCCCGGCTGCTGCTGGAGGAAATCTACAGGGGTGGATGCGTAGACTCGACCAACCAAAGCCTGGCGCTACTACTCATGACCCTTGGACAGCAGGATGTTTCCAAAGTCCTGCTAGGCCCTCTCTCTCCCTACAC|GTTGCTTTCCATCTCTGGGAAATCTACTCTTACCAGAACTAGAGACCGTTTCCAAGGAAAAAAGGAGAAAAAAAGAAGATGCCACTTTGAAAGACATCGTTGCTTCATCCTTCAAATAGCCACATGGGGA 10 0.918763489210716 0.847197911153697 0.8710898076581559 Y Y 3.27763636413971 3.47445076784292 3.27763636413971 0 0.0 0.0 Y 0.0 N N 1283 284 ENSG00000120158 ENSG00000243754 + - 9 9 4861064 4885917 coding downstream RCL1 RP11-125K10.4 4792869 4860454 + + 0.0 4849550 4905157 + - N - - N SA539 1 0.0 1.0 1 0 1 N Y 0.0 0.0 5 1.42365655899822 1.14742468934185 1.42365655899822 1.14742468934185 4 - - 0.96494121776718 HCT116-stranded 1.0 54673 AGCGTCTTTCTCAGGAATGCCCGATCAAGGAGGTGGTGCTTTATGTCAAAGAAGAAATGAAGAGGAATGATCTTCCAGAAACAGCAGTGATTGGTCTTCTGTGGACATGTATAATGAACGCTGTTGAGTGGAACAAGAAGGAAGAACTTGTTGCAGAGCAGGCTCTGAAGCACCTGAAG|TTGGTTAGTCTGCTGCTAATTGGAATTGCTGCGTGGGGCATTGGCTTCGGGCTGATTTCCAGTCTCCGAGTGGTCGGCGTGGTCATTGCAGTGGGCATCTTCTTGTTCCTGATTGCTTTAGTGGGTCTGATTGGAGCTGTAAAACATCATCAGGTGTTGCTATTT 66 1.0 0.954667496148425 0.6275114989315649 Y Y 3.4937534244795 3.4571608175836404 3.4571608175836404 0 0.0 0.0 Y 0.0 N Y 8854 2923 ENSG00000136261 ENSG00000106537 + - 7 7 16746148 16824161 coding coding BZW2 TSPAN13 16685756 16793160 + + 0.0 16736686 16815836 + - N - 0.0638906272165774 N SA539 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 35 1.9123744822364093 1.81675575812459 1.9123744822364093 1.81675575812459 4 - 1.8 0.988984885055609 HCT116-stranded 1.0 531116 GACCTCTTTGGGGGCTGGACGATGGACGCCGTGGCCCGCAGCACAGCCGGCTCCGGCCGCAGCCGCTCCTGCTGCACCTTCTGTGGAGTGCTGCGGCGCCGGGCGCTGGAGGAAGGGGCGCGCCGCGTGGGAGCCACGCACATCGTGACA|GCCAGGTACCCCGCCTCTCTGCAATGCGTGAACATCAACATCTCCCCGGATGAGGTGTGCCAGAAGGCCTATCCTAGAACCATCACGCCTGGCATGGTCTGTGCAGGAGTTCCCCAGGGCGGGAAGGACTCTTGTCAGGGTGACTCTGGGGGACCCCTGGTGTG 16 1.0 0.961032303569126 0.43508560413038 Y Y 3.35975787397237 3.67849247003875 3.35975787397237 1 0.0 0.0 Y 0.0 N Y 747 205 ENSG00000142544 ENSG00000129437 + - 19 19 51611647 51587502 coding coding CTU1 KLK14 51600863 51580574 - - 0.0 51607319 51582208 - + N - - N SA539 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 9 1.6255183099009498 1.6786398232964 1.6786398232964 1.6255183099009498 4 - - 0.986620933936558 HCT116-stranded 1.0 102439 TCTTTTGTATTTCCCCACCCAGAAAAACAGCCTTGACATATGCTGTTGTGTCCAAAATTGGTGGATTCCTGACTTCACTGACCTCAAGAAGGAAGCCACAGACCCTCACG|CTGTGAAGCCAGCCAAGCCCTGCCAGCTTCCCTAGCTCTGGGGGAGGAGGAGGAGGCCTCTTGCTCAGGGGAGCTGTCACCAGCCTGCAAGCCCACTGTCCTAGCCACACTGTGAAACTGGAG 19 0.18246581065797 0.552334139240879 0.695769093133823 N Y 3.38080938095063 3.1940041958516003 3.1940041958516003 0 0.0 0.0 Y 0.0 N N 88 7313 ENSG00000070526 ENSG00000182534 - + 17 17 74639920 74707098 downstream intron ST6GALNAC1 MXRA7 74620843 74668633 - - 0.0 74610087 74677857 + - N - 1.57393399124909 N SA539 1 0.860759493670886 1.0 1 0 2 N N 0.860759493670886 0.0 5 0.8393199116482021 0.8074470036109291 0.8393199116482021 0.8074470036109291 4 - 126 0.979680354347856 HCT116-stranded 1.0 497963 TGTTAATGATGCTAAACTGTTCAGAAAACAACAAAGAAGAGACAATTCCGGATGTGGATGTAGAAGAGGCAGTTCTGGGGCAGTATACTGAAGAACCTCTAAGTCAAGAGCCATCTGTAGATGCTGGTGTGGATTGTTCATCAATTGGCGGGGTTCCATTTTTCCAG|AGCTTGTCTCTGTCCTTGGAACACAGAAGAGCACATTGAATTCATCAGGCCATGGGATGAGAATGATGACGGTGGAGATGGCACAACACTGGAGCTGACCCACAGAGGGATCAATGATTCCCAAATAACCCTTCACT 25 1.0 0.962614746837892 0.551802012437156 N Y 3.2823030095525803 3.66951632120446 3.2823030095525803 2 0.0 0.00327868852459035 Y 0.00327868852459035 N N 2710 901 ENSG00000138160 ENSG00000152804 + - 10 10 94415150 94455403 coding upstream KIF11 HHEX 94353043 94447945 + + 0.0 94410274 94443354 + - N - - N SA539 1 0.0 1.0 1 0 1 N N 0.0 0.0 12 1.8486286661618605 1.47677807239367 1.8486286661618605 1.47677807239367 4 - - 0.987228412248453 HCT116-stranded 1.0 1463 AAGATCGAGCACTCCTTCTGGAGATCCTTTCACACCGAGCGGAAGACAGAACCAGCCACAGGTTTCATCGACGGTGACTTGATTGAGAGTTTCCTGGATATTAGCCGCCCCAAGATGCAGGAGGTGGTGGCAAACCTACAG|ACGCCGACTGGGCCCCCACGTCTGCCTCTCTGGGTTTGGGAGTGGCTGCTGCCCTGGCTGGGCGCCCTCTATGGGTGGTGGGCACTGCACCCTGCCCCTCTGCTCCTTCGGCTGTGGGAGTGGCATCTGCATCGCTCCCAATGTCTGCTCCTGCCAGGATGGAGAGCAAGGGGCCA 11 0.796365413927186 0.656784733027172 0.9758733792926112 Y Y 3.51782959285392 3.10344090351795 3.10344090351795 0 0.0 0.0 Y 0.0 N Y 27987 353 ENSG00000167986 ENSG00000167992 + - 11 11 61110068 61062896 coding coding DDB1 VWCE 61066923 61025762 - - 0.0 61068281 61059048 - + N - - N SA539 1 0.0 1.0 1 0 1 N Y 0.0 0.0 5 0.7649497928945641 1.6892641259755 1.6892641259755 0.7649497928945641 4 - - 0.957894093870078 HCT116-stranded 1.0 292866 CTCCCAGGGGTCGTGGGCGGGTGGGAGCCCTCGCTGGGCCATCTCCTCGGTACAGGTCAGCTGCCGCCGGCGGAGCTCCTCATCTGTCTCCTGGTCCACCACCAGCAGCCGAGTCTGCCCCTCCACAGCCTTGATCCTTTGCACCACCTGG|CCAGCTCCGCTGAAGTCCAGGGACTCCGGTTCCAGCGCAGGCTCTGGGGCGCGCGGGCTCCGGGGCGCACGGACGGGGATCCCTGCCTGGGAGCTCCTGCGTCGCGTCTCCCACAGCTCCTGAACCCACGAGGGCAGCAGGAGAGGAGCCTCGCGGGCTGCGGGTTCGGGG 15 0.970548707396888 0.6861111458536661 0.560822139717972 Y Y 3.3342075554505803 3.54144175291192 3.3342075554505803 6 0.993397986590942 0.0 Y 0.0 N Y 2047 10980 ENSG00000065054 ENSG00000183971 - + 16 16 2089027 2070756 coding coding SLC9A3R2 NPW 2075357 2059927 + + 0.0 2079583 2070313 - + N - 0.549226917976483 N SA539 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 7 1.3280378348864 1.72113703401277 1.72113703401277 1.3280378348864 4 - 548.142857142857 0.968747574628396 HCT116-stranded 1.0 55153 TTGGGGCTTTGATCCCTGAACCAGAAGTGAAAATTGAAGTTCTCCAGAAGCCATTCATCTGCCATCGCAAGACCAAAGGAGGGGATTTGATGTTGGTCCACTATGAAGGCTACTTAGAAAAGGACGGCTCCTTATTTCACTCCAC|GATGGCTGCAGCTCCTCCAAGTTACTGTTTTGTTGCCTTCCCTCCACGTGCTAAGGATGGTCTGGTGGTATTTGGGAAAAATTCAGCCCGGCCCAGAGATGAAGTGCAAGAGGTTGTGTATTTCTCGGCTGCTGATCAC 19 0.8798402130975351 0.704243299107603 0.756662377131481 Y Y 3.57489529770476 3.58337693299909 3.57489529770476 1 0.9928309983592072 0.0 Y 0.0 N Y 596 8309 ENSG00000106080 ENSG00000136193 + - 7 7 30066300 30029905 coding coding FKBP14 SCRN1 30050203 29959719 - - 0.0 30065928 30008684 - + N - - N SA539 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 9 1.4980266777518505 1.3811593482818505 1.4980266777518505 1.3811593482818505 4 - - 0.970209203613032 HCT116-stranded 1.0 103384 TGGTTTGAAGTTCTCGGAGGAGTAAACCATACTAACGAAGCTTCAGTCTTCTCACCAATACTTTTAACACCATTTCGTATCTGCTTAGTGTCAAAAACAGGATGAAAACACACTCCAATCTGAGCAAGGCCATAAGGTAGCCTCTTGTTTACCAGATCCAGGCAATTAACATAGTGTTCCAAGGCACC|TGAACCTCTGTCTTCGACCAACTGAAGCAACTTGGGATTAATTGCTTGATTAGCTTCACGAAGCACAGAGATAAGGTCGCTCACTTGCTTTATGTTATTAGGTGTAAAGAAAGTGTAT 11 1.0 0.265707050184615 0.579306935701863 Y Y 3.66273010308932 3.6852786881538906 3.66273010308932 0 0.0 0.00325732899022824 Y 0.00325732899022824 N Y 1454 42045 ENSG00000256525 ENSG00000108654 - + 17 17 62493154 62504317 coding coding POLG2 DDX5 62473902 62495734 - - 0.0 62489138 62496667 + - N - 5.17199480878861 N SA539 1 0.0 1.0 1 0 1 N Y 0.0 0.0 7 1.76363424472913 1.01993305719275 1.76363424472913 1.01993305719275 4 - 480.714285714286 0.979992097862833 HCT116-stranded 1.0 180116 ACGAGAAAGAAGTGCTTCAGAAGGCAATAGAAGAGAACAACAACTTCAGTAAAATGGCAGAAGAGAAACTGACCCACAAAATGGAAGCTAATAAAGAGAACCGAGAGGCACAAATGGCTGCCAAACTGGAACGTTTGCGAGAGA|AGCTCCCTGCCCAGGCCCACAGCCATGGCCATGGCCCAGAAACTCAGCCACCTCCTGCCGAGTCTGCGGCAGGTCATCCAGGAGCCTCAGCTATCTCTGCAGCCAGAGCCTGTCTTCACGGTGGATCGAGCTGAGGT 8 1.0 0.929602017746912 0.96852253603292 N Y 3.45872825368684 2.99871737545823 2.99871737545823 1 0.992726613863436 0.0 Y 0.0 N Y 28719 862 ENSG00000117632 ENSG00000182749 + - 1 1 26233482 26197744 coding utr5p STMN1 PAQR7 26210672 26187701 - - 0.0 26227982 26190352 - + N - - N SA539 1 0.008130081300813009 1.0 1 0 1 N N 0.0 0.008130081300813009 5 0.8499442143272931 1.30678922952821 1.30678922952821 0.8499442143272931 4 - - 0.968277038459605 HCT116-stranded 1.0 292666 AGACAAACAGTATACAGATTGGAGCCGGACTGTCCAGAAGCAGGGCTTTCACCACCTTTGGCTCCAAAGGGATACTCCTATCACACACATCAGTTTTCATCCCAAGAGACCGATGCACATCCTTCTCCATGATGCCTACATGTTCTGCATCATTGACAAGTCATTG|TCAAGTTCATCCGAGAAGTAACACCATATATCAAGAAGCCATCATTAGTATCAGATCTGCCGTGGGAAGGTGCAGCCCCCCAGTCACCAAGCTTTAGTGGCAGTGAGGACTCTGGTTCGCCAAAACACCAGAACAGCACCAAGGACAGGAAG 23 1.0 0.938618410858476 0.32024026374982106 Y Y 3.540809910726149 3.51377186168787 3.51377186168787 2 0.993441676291041 0.0 Y 0.0 N Y 12095 4801 ENSG00000141076 ENSG00000168807 + - 16 16 69202941 69342955 coding coding CIRH1A SNTB2 69165194 69221032 + + 0.0 69199429 69279505 + - N 5.63002370333184 0.236529028750737 N SA539 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 10 1.7423856393709498 1.6680155206173102 1.7423856393709498 1.6680155206173102 4 158.2 3.5 0.98279675143718 HCT116-stranded 1.0 380338 TCCAGATGCTATCGCGACAGAACAATTACACCGTCAACAACAAGAGAAATGGAGTGGCCAAAGTCAACATCTTCTTCAAGGAGCTGAACTACAAAACCAATTCTGAGTCTCCCTCTGTCAC|GGTGCTCCTGGAGCTGTTGGTGGGAATATACCCCTCAGGGGTTATTGGACTGGTCCCTCACCTAGGGGACAGGGAGAAGAGAGATAGTGTGTGTCCCCAAGGAAAATATATCCACCCTCAAAATAATTCGATTTGCTGTACCAAGTGCCACAAAGAAATGG 6 1.0 0.522467485123382 0.522738310052227 N Y 3.45976132345673 3.52680574168821 3.45976132345673 0 0.991764740238881 0.00353356890459344 Y 0.0 N Y 2416 6656 ENSG00000111319 ENSG00000067182 + - 12 12 6486896 6451280 coding coding SCNN1A TNFRSF1A 6456009 6437923 - - 0.0 6457893 6443410 - + N - - N SA539 1 0.0 1.0 1 0 1 Y N 0.0 0.0 6 1.10492747862548 1.28554062417003 1.28554062417003 1.10492747862548 4 - - 0.9883509670362142 HCT116-stranded CGHSA0430 1.0 79316 GGGACTACCTGCACTACCACATCAAGTGCTCTAAGGCCTATATTCACACACGTATGCGGGCGAAAACGTCTGACTTCCTCAAGGTGCTGAACCGCGCACGCCCAGATGCCGAGAAAAAAGAAATGAAAACAATCACG|CATGCCGGCTGCCGCTCCAGGACTCCCCTGTCCCCAGGACCAAGATGACGCCCAACAGCACTGGCGAGGTGCCCAGCCCCATTCCCAAGGGGGCTTTGGGGCTCTCCCTGGCCCTGGC 12 0.496577974457531 0.307140873765214 0.532192233932591 N Y 3.04277212824767 3.40740634961144 3.04277212824767 1 0.0 0.0 Y 0.0 N Y 11173 334 ENSG00000163466 ENSG00000179921 + - 2 2 219119079 219128582 coding utr5p ARPC2 GPBAR1 219081817 219124219 + + 0.0 219114644 219127403 + - N - - N SA539 1 0.0 1.0 1 0 1 N N 0.0 0.0 5 1.3174135322073002 0.988060149155478 1.3174135322073002 0.988060149155478 4 - - 0.906094216529575 HCT116-stranded 1.0 292503 GCCGTGGGTCCCTGCCGGCCGGCGGCGGGCGCAGACAGCGGCGGGCGCAGGACGTGCACTATGGCTCGGGGCTCGCTGCGCCGGTTGCTGCGGCTCCTCGTGCTGGGGCTCTGGCTGGCGTTGCTGCGCTCCGTGGCCGGGGAGCAAGCGC|CAGACAGAGGTGTTCCAGGCCTTGCAGCGGCTCCATATGACCATCTTCTCCCAGAGCGTCTCACCATGTGGGAAGTTTCTGGCGGCTGGCAACAATTACGGGCAGATTGCCATCTTCAGGTACCCTCTGCCGCTGTCCACCCATT 13 0.676497942223645 0.985381118979432 0.533050855358891 Y Y 3.24954231739258 3.74081680969488 3.24954231739258 0 0.0 0.0 Y 0.0 N Y 2236 1968 ENSG00000006327 ENSG00000131652 + - 16 16 3072384 3077756 coding intron TNFRSF12A THOC6 3068446 3074028 + + 0.0 3070492 3075709 + - N 0.340963471404026 0.80527368534251 N SA539 1 0.20253164556962 1.0 1 0 1 Y Y 0.20253164556962 0.0 11 1.61489400722186 1.23241911077458 1.61489400722186 1.23241911077458 4 19.6363636363636 17.2727272727273 0.940297993307354 HCT116-stranded 1.0 331109 AACCTATGATCCTCCAACTCTCCTGGAATTAGCTGCACGGACCATTAAGATTCGAAATATTTCCTACACTCCCTATGATCTTCCTGGAAATCTTCTTAGATACTTGGGTTCAGCCAGCAATTGCCCAAACCCAAAGTGTGG|AGGAACCAGAGTGAGGGTACTCGAACAGTGACTGCCATCTGGTGGTTAACCAGAATCATCACCTTGTGTAGCCTGATGGTTACTAAGATGTCCACTCTTGACTCACATGGCATGCACTCGCAGCAGGGGACCAGTTGAAGGATGTCTGACTTTGGAGGGTCACCAGTTG 8 0.7482318238717091 0.6747376531397529 0.751844756109287 N Y 3.2708899988179203 3.65657572715995 3.2708899988179203 0 0.0 0.0 Y 0.0 N Y 5791 236 ENSG00000163428 ENSG00000175697 + - 3 3 120068186 120003941 coding intron LRRC58 GPR156 120043356 119883492 - - 0.0 120053709 119963325 - + N - 6.90689137326881 N SA539 1 0.0 1.0 1 0 1 N N 0.0 0.0 7 1.45552946703549 1.2961649268491202 1.45552946703549 1.2961649268491202 4 - 0 0.944094670200836 HCT116-stranded 1.0 179218 GCGAGACTTGTGAGCGGCCATCTTGGTCCTGCCCTGACAGATTCTCCTATCGGGGTCACAGGGACGCTAAGATTGCTACCTGGACTTTCGTTGACCATGCTGTCCCGGGTGGTACTTTCCGCCGCCGCCACAGCGGCCCCCTCTCTGAAGAATGCAGCCTTCCTAGGTCCAGG|CTTTCATCCATCCCAGGGGAATCACTTACCTATGCCAGCACAACTTTCAAACTCTCAGAAGAAAAGAGCAATCACTTGGCTGAGAACCATTCTGCAGACTTTGACCCCATTGTCTATGCTCAAATTAAAGTAACAAACTAACT 15 0.543507345360811 0.4473875296420179 0.8083283571923392 Y Y 3.5597647729410897 3.43614916339873 3.43614916339873 0 0.0 0.0 Y 0.0 N Y 19725 492 ENSG00000116459 ENSG00000143110 + - 1 1 112005395 112021134 coding coding ATP5F1 C1orf162 111991486 112016414 + + 0.0 111992495 112020605 + - N - 0.108417121560756 N SA539 1 0.0 1.0 1 0 1 N Y 0.0 0.0 12 1.2005462027373002 1.57239679650549 1.57239679650549 1.2005462027373002 4 - 2.75 0.9114746897412148 HCT116-stranded 1.0 453983 ACCTAAGAATATCTGCTGTGCCCAGGTGGTTGTCGGGGGCAGGGGACAGCAGCACAAACTCTGCTTCCTGGCATGATGTCCAGCTCCTCACTCTTCCAACCTTCCCTAAGGGGAGTTCCCTCTTGGAGGCCTTTGGTATCCTTTCCTGTCAGCTGACTCCCAT|CTTCAGAATCCCAGAGTTGAATAGTCACATTTGTTTCTCCTTCTTCATCAGTCACCAGATTTATGGTAAAGTTTGTAGCATCTGATGAGATCTTCTTGGCCACATTCACCATTTGTAGTATTTTAGGATCTTCTATTT 20 0.9095576611982712 0.596226767068169 0.678450753052246 Y Y 3.48487056160104 3.39487633072086 3.39487633072086 0 0.99277761781361 0.0 Y 0.0 N N 6394 323 ENSG00000133731 ENSG00000253598 - + 8 8 82598928 82608409 upstream coding IMPA1 SLC10A5 82570196 82605842 - - 0.0 82602027 82606883 + - N - 0.321354082723626 N SA539 2 0.0 2.0 2 8 2 N Y 0.0 0.0 8 1.77425854740822 1.09430317594639 1.77425854740822 1.09430317594639 4 - 1.875 0.9307164974851708 HCT116-stranded 1.0 348385 GAACGAGGCCATTGACCAGCGCAACCAGCAGCTGCGCACACTGCAGGAGGAGTGCGACCGGAAGCTCATCACGCTGCGAGACGAGATCTCCATTGACCTCTACGAGCTGGAGGAGGAGTATTACTCGTCCA|GCTGGCAAAACTCAAGGCTCAGAAACTGCAGGGCCCCCAAAAAAGAAAAGGAAGAAAACACAAAAGAAATTCCGGAAGCGAGAAGAGAAGGCTGCTGAGCACAAGGCCAAGTCCTTGGGGGAGAAATCTCC 6 0.961247145571135 0.9778171678029628 0.959012344512966 N Y 3.782089642372741 3.0606404875302298 3.0606404875302298 1 0.992395437262357 0.0 Y 0.18631178707224305 N Y 1345 5850 ENSG00000148297 ENSG00000148296 + - 9 9 136214986 136203235 coding coding MED22 SURF6 136205160 136197552 - - 0.0 136210980 136201437 - + N - - N SA539 2 0.0 1.2 1 1 1 N N 0.0 0.0 5 1.30678922952821 1.13680038666275 1.30678922952821 1.13680038666275 4 - - 0.906956387331585 HCT116-stranded 1.0 103327 AAGTTTACAGGAGAGCCGACCATTTTCAGTTGACTTTTTCAGGAAAATGATTCAGTTTGAAAAGGAGCAAGAATCCTGCAATATGGCGAACATAAGAGAATATTATGAGAGAGCTTTGAGAGAGTTTGGATCCGCAGATTCT|GCCCGTGGAACACAGAGCATTCCTAATGACAGTCCTGCCCGGGGTGAGGGCACCCATTCTGAAGAGGAAGGCTTTGCCATGGATGAGGAGGACTCTGATGGAGAACTGAATACCTGGGAGCTGTCAGAAGGGACAAACTGTCCACCCAAGGAACAGCCTGGCGATCTTTT 44 1.0 0.726308250576396 0.286378291051058 Y Y 3.29227237536341 3.73808832274579 3.29227237536341 2 0.0 0.00319488817891378 Y 0.00319488817891378 N Y 1829 2679 ENSG00000108651 ENSG00000172301 + - 17 17 30228784 30186356 coding coding UTP6 C17orf79 30187923 30178883 - - 0.0 30192385 30180049 - + N - - N SA539 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 19 1.4980266777518505 1.6892641259755 1.6892641259755 1.4980266777518505 4 - - 0.973339335350914 HCT116-stranded 1.0 331244 ACCAGACTCAAGCCCTCACTCGACTCTCGCGGCCTTCGTTGCTCGCACAGCTCCCTGCCCAGGCTAGGAGGCCGGCTTGCGGGGTTGAGTGGCCCGAGCTAAGGGTGCGGAGACCTAAGGGCGGCGACTACGACGGCGTTGATATCGGTGGTAACGACGGCCTCAGCAGGCGGGGAAGATGAAAGG|GTTCCTATTACTGTAACCATGCCAGAAATGACAGAGAATGAGACGCCTACAAAAAAGCAGCACAGAAAGAAAAACCGGGAGACACACAATGCAGTGGAGAGGCATAGAAAGAAGAAAATTAATGCTGGGATAAACAGAATAGGAGAGCT 20 1.0 0.5029886895560399 0.245126966552986 Y Y 3.5293265419746 3.6491271616355 3.5293265419746 1 0.0 0.0 Y 0.0 N Y 27378 9813 ENSG00000121579 ENSG00000176542 + - 3 3 113465147 113415493 coding utr5p NAA50 KIAA2018 113437841 113367232 - - 0.0 113464789 113393743 - + N - - N SA539 1 0.0 1.0 1 0 1 N Y 0.0 0.0 13 1.81675575812459 1.48740237507276 1.81675575812459 1.48740237507276 4 - - 0.9757225175459692 HCT116-stranded 1.0 55110 TCTTGCGGGCCGGCGTGTTGGACAGGCAGGACACGTTGGAGAGTGTCATGAGGCTTCCAGACAGCTCTGGGTTCTTCCCACATTCGTCATAGAAGGCGCAGTAGCCAGGCTGGTGGATGGTTGTGTAAGGCTCACTCTGGG|CCCAGGTAGTCAGGAACATGGCCCAGGTGGGGCTTCACCACTGCGGGGTGCAAAGGTAGGTCATGCCGCAGCAGCTGGAGGTCCCTAGGGTTGTCTTCAAAGTATGTCTGCCGGGGGAAGAGGGAGAGCCACAGAG 11 1.0 0.626488966341359 0.8149280185103679 Y Y 3.5465630590714 3.42936294528359 3.42936294528359 0 0.0 0.0035971223021583603 Y 0.0 N Y 669 9363 ENSG00000015520 ENSG00000136271 - + 7 7 44580914 44614650 coding intron NPC1L1 DDX56 44552134 44605016 - - 0.0 44579941 44607717 + - N - 0.89793934534253 N SA539 1 0.0 1.0 1 0 1 N Y 0.0 0.0 5 1.34928644024458 1.07305457058821 1.34928644024458 1.07305457058821 4 - 221.2 0.969278514367591 HCT116-stranded 1.0 103394 ATATTATATTACAAGAGCCAAATTGGTTTCTAAAATAGCTAAATATCCCCATGTGGAGGACTATCGCCGCACCGTGACAGAGATTGATGAGAAAGAATATATCAGCCTTCGGCTCATCATATCAGAGCTGAGGAATCAATATG|GCTGAAAAACTGGGTGGTAGCTGAAGACGTGGTGTTTAAACCTGTGGCTGCCCCCTGGAACCCGGAGCACTGGCTACAGCGCCCACAGCTGACTCGGCAGGTCCTGGGAAAGGAGGACCTGACAGCTTTTTCCTTGGGAAGCCCCCTACCCCGCTACCTCTACCTGGCT 26 0.893298671308527 0.6287611151823879 0.322089556694183 Y Y 3.60888739872753 3.1363999347708305 3.1363999347708305 1 0.0 0.0 Y 0.0 N Y 17804 2809 ENSG00000131467 ENSG00000131480 + - 17 17 40995523 41002724 coding coding PSME3 AOC2 40976402 40996617 + + 0.0 40991397 41001103 + - N - - N SA539 1 0.0 1.0 1 0 3 Y Y 0.0 0.0 21 1.40240795364003 1.7955071527664097 1.7955071527664097 1.40240795364003 4 - - 0.9791173207532242 HCT116-stranded 1.0 103592 CCAGATTTCTAGATATTATATTACAAGAGCCAAATTGGTTTCTAAAATAGCTAAATATCCCCATGTGGAGGACTATCGCCGCACCGTGACAGAGATTGATGAGAAAGAATATATCAGCCTTCGGCTCATCATATCAGAGCTGAGGAATCAATAT|GATCTGGTGGCTTGGGTCACAGCCAGCTTCCTGCACATTCCCCATGCCGAGGACATCCCAAACACAGTGACTCTGGGGAACAGAGTTGGCTTCTTGCTCCGACCCTATAACTTCTTTGATGAGGACCCCTCCATCTTCTCCCCT 3 0.67627669750734 0.880024247119507 0.7544118420624399 Y Y 3.5676145660496603 3.5314325343077404 3.5314325343077404 0 0.0 0.0 Y 0.0 N Y 17804 2809 ENSG00000131467 ENSG00000131480 + - 17 17 40995523 41002724 coding coding PSME3 AOC2 40976402 40996617 + + 0.0 40991397 41002099 + - N - 0.612178624779703 N SA539 1 0.0 1.0 1 0 3 Y Y 0.0 0.0 7 1.09430317594639 1.27491632149094 1.27491632149094 1.09430317594639 4 - 27.8571428571429 0.962984285239259 HCT116-stranded 1.0 331095 ATCCGCCTGGGCGTCACGCTTCGTGGGGCGGGACGAGGAGAAGCCAAACGTAAAGACACCAGGAGTTTCTCGGGCCCAGCTGTGGCTGCTGCCGGGGAGCCCCAAGCCTTGGCGGGTCCTTGCGGCGAATAGGAGTCTGGTCAGGCGTCAGGCTAGTCCGACGAAGAGTGGG|CAAAACCAAAAGACCCATTTCTAAAGAAGTACTGCAACCCTAAGAAGATTCAGGGCCTGGAACTCCAGCAAATAAAAACATATGGACGGCAAATATTAGAGGTACTGAAGTTTCTTCATGACAAGGGATTC 20 0.59517358910347 0.558670218680682 0.367001894112226 Y Y 3.51207644450867 3.1604362503519 3.1604362503519 0 0.0 0.0 Y 0.0 N Y 197 1679 ENSG00000255154 ENSG00000168297 + - 3 3 58305920 58411748 utr5p coding RP11-80H18.3 PXK 58291974 58318607 + + 0.0 58292144 58381385 + - N - - N SA539 1 0.0 1.0 1 0 1 N Y 0.0 0.0 11 1.24304341345367 1.21117050541639 1.24304341345367 1.21117050541639 4 - - 0.917530414769576 HCT116-stranded 1.0 462974 CATGTCAGCAGGGCCTATGGTGGTTCCATGTGTGCTAAATGTGTTCGTGACAGGATCAAGCGTGCTTTCCTTATCGAGGAGCAGAAAATCGTTGTGAAAGTGTTGAAGGCACAAGCACAGAGTCAGAAAGCTAAATAAAAAAATGAAACTTTTTTGAGTAATAAAAATGAAAAGACGCTG|AATAATTTATGATGTTATTGTTGAACCTCCAAGTGTCGGTTCTATGACTGATGAACATGGGCATCAGAGGCCAGTAGCTTTCTTGGCCTACAGAGTAAATGGACAATATATTATGGAAGGACTTGCATCCAGCTTCCTATTTACAATGGGAGGTTTAGGTTTCATAATCCTG 41 1.0 0.741788109137456 0.621526097190964 Y Y 2.9736310652528704 3.57080706131517 2.9736310652528704 3 0.0 0.0 Y 0.0 N Y 20924 6644 ENSG00000109475 ENSG00000198856 + - 4 4 109551568 109588976 utr3p coding RPL34 OSTC 109541722 109571740 + + 0.0 109546409 109576720 + - N - - N SA539 42 0.0 13.6 3 20 3 N Y 0.0 0.0 20 1.88050157419914 1.8698772715200505 1.88050157419914 1.8698772715200505 4 - - 0.908830266012974 HCT116-stranded 1.0 348515 CACGCACGCCGGGCGTGCCAGTTTATAAAGGGAGAGAGCAAGCAGCGAGTCTTGAAGCTCTGTTTGGTGCTTTGGATCCATTTCCATCGGTCCTTACAGCCGCTCGTCAGACTCCAGCAGCCAAGATGGTGAAGCAGATCGAGAGCAA|GGAGGAAACACACCTGCTCCTGCAGAATCGATGGTCAATGCTGTTTGGATTAACAAGGAGAGAAGAAGCTCACTGTCCCTGGAAGAGGCAGATTCTGAGGTGGAGGGGAGGCTGGAGGAGGCTGCCCAGGGCTGCCTTCAGGCCCCCAAGTCTCCATGGCACACGCACCTGGAGATG 45 1.0 0.9392076930792892 0.313238581117211 Y Y 3.44247137319745 3.6491271616355 3.44247137319745 0 0.0 0.00306748466257656 Y 0.00306748466257656 N Y 27048 1988 ENSG00000136810 ENSG00000188959 + - 9 9 113018920 112970469 coding coding TXN C9orf152 113006091 112952328 - - 0.0 113018692 112963754 - + N - - N SA539 1 0.0 1.0 1 0 1 N Y 0.0 0.0 21 1.60426970454277 1.90175017955732 1.90175017955732 1.60426970454277 4 - - 0.9790488505577348 HCT116-stranded 1.0 1565 GTGGCAGGGGAACCGGAAGTGGAGGAGCTGCTGCTGGTGCTGGGGCCGGAGGAGGGACGCGCCGGAGCGGGACCGACGGGACCGAGCGAGCGACCGACGCGCCACCCGCCGACGCCTCAGCCGCTTGGGGCCCGCACGGACCCTCTACTTCAGT|TTCAGCGCAAGTACCTCTACCAAAAAGTGGAACGAACCCTGTGTCAGCCCCCCACCAAGAATGAGTCGGAGATTCAGTTCTTCTACGTGGATGTGTCCACCCTGTCACCAGTCAACACCACATACCAGCTC 10 1.0 0.388384960656351 0.5075225802086121 Y Y 3.45872825368684 3.58064844605001 3.45872825368684 0 0.0 0.0 Y 0.0 N Y 21601 1550 ENSG00000168092 ENSG00000149577 + - 11 11 117047610 117068160 utr5p coding PAFAH1B2 SIDT2 117014983 117049449 + + 0.0 117015134 117052523 + - N - - N SA539 1 0.0 1.0 1 0 1 N Y 0.0 0.0 10 1.11555178130457 1.23241911077458 1.23241911077458 1.11555178130457 4 - - 0.9854190978840892 HCT116-stranded 1.0 548298 GGGGGACTGAAGAGTTCGAGAGATCCAAGAGGAAGAATCCAGCTGCCTATGAAAATGACAAATGAGCAACGCATCCGGATGACGGTTCCCTGTCTCTGAAAGACCTTTCTCTGGAAGAGGAGTCTGCATTGTAGTGTCTCAAAGACACAATAAACTTCCTATGGTCTGCACTGTTGTGATATTACATTTTT|ATAGATGGCTCCCCAATACCAGAAGTGAGTTCGGCAAAGAGAAGGCCACGGAGAATGACCCCATTTTGGAGAGGGGTTTCCCTCAGGCCTATTGGAGCCTCCTGCCGGGATGATTCTGAGTGTATCACAAGGCTATGCA 21 1.0 0.9295063763763368 0.556798619706191 Y Y 3.4048855493250496 3.716171579866991 3.4048855493250496 0 0.992827490273642 0.0 Y 0.677237062313895 N N 7327 319 ENSG00000164405 ENSG00000164406 + - 5 5 132203723 132210738 utr3p coding UQCRQ LEAP2 132202252 132208014 + + 0.0 132203400 132209642 + - N 11.6587248137088 0.227044383220466 N SA539 2 0.0 1.0952380952381 1 2 1 Y Y 0.0 0.0 21 2.06111471974369 1.3917836509609398 2.06111471974369 1.3917836509609398 4 56.5238095238095 0.476190476190476 0.9837393530554872 HCT116-stranded CGHSA0756 1.0 78873 CCATTTCCCAAAAACTTTATGTCTGTGGCAAAGACTATTCTAAAGCGTCTGTTCAGGGTTTATGCCCATATTTATCACCAGCACTTTGATTCTGTGATGCAGCTGCAAGAGGAGGCCCACCTCAACACCTCCTTTAAGCACTTTATTTTCTTTGTTCAGG|CACTAAAAGAAGAAATCAAAGAGATGCATGGATTGCGGATATTTACCTCTGTCCCCAAACGCTGACCACGCCCTGGCTGCATAGATGCTGCTGCTTAA 7 0.8681263382301401 0.575580980852398 0.652251586812739 N Y 3.31063524818594 3.33424740824393 3.31063524818594 2 0.0 0.0 Y 0.0 N Y 11376 1607 ENSG00000114978 ENSG00000163170 + - 2 2 74406025 74375121 coding coding MOB1A BOLA3 74382165 74362525 - - 0.0 74386218 74362785 - + N - - N SA539 3 0.0 1.8 1 3 2 Y N 0.0 0.0 5 1.65739121793822 1.35991074292367 1.65739121793822 1.35991074292367 4 - - 0.9574884670763008 HCT116-stranded 1.0 78874 CACTGTGGATTTCTTTAACCAGATCAACATGTTATATGGAACTATTACAGAATTCTGCACTGAAGCAAGCTGTCCAGTCATGTCTGCAGGTCCGA|GGCACTAAAAGAAGAAATCAAAGAGATGCATGGATTGCGGATATTTACCTCTGTCCCCAAACGCTGACCACGCCCTGGCTGCATAGATGCTGCTGCTTAAGACCTTGGATGAACTTCACTGACATCATTCTTCCCTAAG 4 0.5106268266210471 0.805867826559283 0.606768904601476 N Y 3.59375687396386 3.3855294595259906 3.3855294595259906 0 0.0 0.0 Y 0.0 N Y 11376 1607 ENSG00000114978 ENSG00000163170 + - 2 2 74406025 74375121 coding coding MOB1A BOLA3 74382165 74362525 - - 0.0 74394141 74362785 - + N - - N SA539 2 0.0 1.2 1 1 2 N N 0.0 0.0 5 1.25366771613276 0.9243143330809308 1.25366771613276 0.9243143330809308 4 - - 0.947104236219712 HCT116-stranded 1.0 379710 TACCTGCAGGCAAGAATCTGACGAGTTCTGTCTCGGCACCCTTCTGCTTCCGGGCCTTTCGGCCTGGCCCCCGCTTCTCCTTCGTAGGGTCCAACTTGCGCCCCATGGTA|CTGCTGTGGGGTAGGTTCGGGTGCCCGGTTTGCCAGGCGGCTGAGAATGTTACGCTCTGACATCTGTAACCTCACAGCAACTGGGGGAATTCGGGCAATGGTAGCTGGGAGTCGAGTCACATCAGCTTTCATGTCACTCAGCAGTT 12 0.6510356082557329 0.777327629633294 0.410524279985968 Y Y 3.6136074773028906 3.11188268601893 3.11188268601893 0 0.0 0.0 Y 0.0 N Y 15366 20492 ENSG00000111641 ENSG00000111642 - + 12 12 6677857 6716642 utr5p coding NOP2 CHD4 6666029 6679249 - - 0.0 6677088 6680035 + - N 7.72038708289949 1.32217272075213 N SA539 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 5 0.860568517006384 1.26429201881185 1.26429201881185 0.860568517006384 4 127.8 178.6 0.935551466792835 HCT116-stranded 1.0 547982 CTTCGGACCAGTCGGGCTGAGGTTCGGAGAAGTTGCAGACGCAGCGGAAATCTTCATCGTCCAGCTCACAAGGTTCTGGCGTGGTCGCAGAGACGTGCACCAGCGGCAGCAGCAGCAGCAACAAGCAGGACGCGCGCTCC|GTAGCGGGCCCAGAGCTTGGGCTGCACATCGGAGCATTCGCGGATTAGGATGGGTAGGTCGGGATTCGCCTTCTTCAGCTCCACGTAGCGTTTCTCAATGAAGTCCCTGCGGGGCCGGAGAGAGCGCCGCGCGTGCTGTGGGCGG 3 0.869403389421352 0.346974503215711 0.24558815793756 Y Y 2.9553825931372004 3.51935717616377 2.9553825931372004 8 0.992882117882118 0.0 Y 0.0 N Y 461 2104 ENSG00000170458 ENSG00000131495 - + 5 5 140013286 140027370 coding coding CD14 NDUFA2 140011313 140018325 - - 0.0 140012565 140026841 + - N - 0.366012157694316 N SA539 1 0.0 1.0 1 0 1 N Y 0.0 0.0 5 0.7755740955736551 1.12617608398366 1.12617608398366 0.7755740955736551 4 - 131 0.91191561626332 HCT116-stranded 1.0 450146 ATCTGTTAGTCCAGCTAAAGCAAAAACTCCTAGTGCAATATTAAAATCTTCTTCAATAATCAAATAGCCCAGAACTGGGGCCAAGCCAATTCTCGTCATTGACAACATATTCGGGATTGTCCATGGGTTTTCATA|CCTTTTTCAATCAGATGTCTTTGTATGCAACTTCTTTTTTGAATTCAGCAATTTAGGGAGGCATCTCATGCAGAATCCTTTTGTTGCTGTTCCGGTGCGGGTGGGGGCATTCTTCTACCTATTCCTGCTGCAGAAGTGGCAAAGGTGGGGCAGGGAGGCAGCAGC 17 1.0 0.641384221637147 0.3943277128810049 N Y 3.30232144676095 3.22532124308776 3.22532124308776 4 0.992617201919527 0.0 Y 0.0180878552971575 N N 2986 2088 ENSG00000088766 ENSG00000125885 - + 20 20 6020699 5975852 coding downstream CRLS1 MCM8 5986736 5931298 + + 0.0 5990421 5976264 - + N - - N SA539 1 1.0 1.0 1 0 2 N N 0.0 1.0 8 1.18992190005821 1.47677807239367 1.47677807239367 1.18992190005821 4 - - 0.9876169786075628 HCT116-stranded 1.0 450189 CAGCATGGTTCTGGAATGAGCAACAGGTCAACAGCGAAAAGATTTATTTCTGCTCTCAACAACGTTGCTGAAAGAACTTATAATAATATATTTCAATTTCATCAACTTCGGCAGATTGCCAAAGAACTAAACATTCA|GTATGAAAACCCATGGACAATCCCGAATATGTTGTCAATGACGAGAATTGGCTTGGCCCCAGTTCTGGGCTATTTGATTATTGAAGAAGATTTTAATATTGCACTAGGAGTTTTTGCTTTAGCTGGACTAACAGATTTGTTGGATGGATTTATTGCTCGAAACTGGGCC 4 0.851013282904048 0.354270949567754 0.176488589666615 N Y 3.55231620741665 3.3148913184448703 3.3148913184448703 5 0.992724506051024 0.0 Y 0.0 N Y 2088 2986 ENSG00000125885 ENSG00000088766 + - 20 20 5975852 6020699 coding coding MCM8 CRLS1 5931298 5986736 + + 0.0 5974341 5990421 + - N - - N SA539 1 0.0 1.0 1 0 2 Y N 0.0 0.0 5 1.25366771613276 0.99868445183457 1.25366771613276 0.99868445183457 4 - - 0.9780095408108148 HCT116-stranded 1.0 141257 CGCCTTTTTTGCGCCGGCTGTGACAAGCGCTGCGGCATTTGTCCCCGCGACAGCACCGCTGCCGCCGTCTCTAAGGTCGCCCGGGTCCCACCGCCGCCACCATGCCTCGGGGAAGCCGCAGCGCGGCCTCCCGGCCAGC|CAGTTTCCCAGACAGTCCTGGCCCAGCTGGATGCACTGCTGGTCTTCCCAGGCCAAGTGGCTCAACTCTCCTGCACGCTCAGCCCCCAGCACGTCACCATCAGGGACTACGGTGTGTCCTGGTACCAGCAGCGGGCAGGCAGT 4 1.0 0.954772787052994 0.576719246562025 Y Y 3.15206901576442 3.38230645903694 3.15206901576442 1 0.0 0.0 Y 0.0 N Y 6846 69 ENSG00000250479 ENSG00000128218 + - 22 22 24110630 24096655 coding intron CHCHD10 VPREB3 24108021 24094930 - - 0.0 24110021 24095385 - + N - 23.4895921000954 N SA539 1 0.0 1.0 1 0 1 N Y 0.0 0.0 6 1.05180596523003 1.35991074292367 1.35991074292367 1.05180596523003 4 - 0.166666666666667 0.978215876275038 HCT116-stranded 1.0 103669 ATATACAGGTGACGTGGAGTCGGACTCTGCCAAGCAGTTTTTGCAGGCAGCAGAGGCCATCGATGACATACCATTTGGGATCACTTCCAACAGTGACGTGTTCTCCAAATACCAGCTCGACAAAGATGGGGTTGTCCTCTTTAAGAAG|GGTGACCTGGAGCAGGTGGGGCGCTTCATCCGGACTCGGAAAGTCTCCCTGGCCACCATCCACCCCTCAGGCCTGGCCGCCTTGCATGAAGCCGTGCTCTCTGGAAACCTGGAATGCGTGAAGCTGCTGGTCAAATACGGGGCTGACATTCACCAGCGA 13 1.0 0.722215354890652 0.562905303423361 Y Y 3.72448538129198 3.5748554449114103 3.5748554449114103 0 0.0 0.0 Y 0.0 N N 93964 100 ENSG00000185624 ENSG00000182676 + - 17 17 79818570 79792926 coding coding P4HB PPP1R27 79801035 79791368 - - 0.0 79813018 79792709 - + N - - N SA539 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 6 1.4130322563191298 1.47677807239367 1.47677807239367 1.4130322563191298 4 - - 0.982431963940962 HCT116-stranded 1.0 101245 CAGCCACACCTTCTCACCCACACAGTGGTGGTACTTCAGCAGGGGGCTGGTGCAGATGAAGACCTGCGTGCTGCGGAGAAGGACGCGGTTACCGCCGGGAGCCAGGAGCCCGCCCAGGACTCCGCCCGCCCCCCTCTCTCCTTACTCCG|ACACGGGGGCACATGCTGGTGCCCAAGCTGCATCTGTGGCTGTTGATGCTGGGCCCATCCCTTTGAACAGTGAGCACAGATAACAAGAGTACCTGCTGACTTGGCCCAAGAAGCTTGATTTTCTTCAGGTGTCCCAAAGATATTAGAGGCCATTTTGTTCT 15 0.8645161849839771 0.30541399564839805 0.250755386680378 Y Y 2.9380884529813 3.23424395875957 2.9380884529813 0 0.0 0.0 Y 0.0 N N 2785 19806 ENSG00000125458 ENSG00000189159 - + 17 17 73127890 73164376 coding intron NT5C HN1 73126320 73131343 - - 0.0 73127279 73144532 + - N 2.32360013974669 4.20030938568822 N SA539 1 0.154838709677419 1.0 1 0 1 N Y 0.0 0.154838709677419 11 1.46615376971458 1.64676691525913 1.64676691525913 1.46615376971458 4 30.7272727272727 257.090909090909 0.929266780240184 HCT116-stranded 1.0 313374 GGAAAGGAGCGTCCTGAGGGAGAAGAAGCACAGGTGTGAGGGAACATGTGATGAAGAAAGGACCACAGAAAGTCAAGGTCAGAGATTGGACTGCATCCTGTGGGCAGTGGTCCAGGTGACGATGAAAAAGAGGGAGAACAG|GCCTCAGCCTTTCCTGCCTTTGACTGAAACAGCAGTATCTTCTAAGCCCTGGGGGCTTCCCCGGGCCCCAGCCCCGACCTAGAACCCGCCCGCTGCCTGCCACGCTGCCACTGCCGCTTCCTCTATA 20 0.704729959088795 0.956151653016912 0.625217238818932 Y Y 3.2038455805864303 3.42936294528359 3.2038455805864303 0 0.992155255685976 0.0 Y 0.0 N N 149 193 ENSG00000204498 ENSG00000226979 + - 6 6 31526606 31542101 downstream utr5p NFKBIL1 LTA 31514647 31539831 + + 0.0 31529046 31539912 + - N - 0.103317692650721 N SA539 1 0.5645161290322579 1.0 1 0 1 N Y 0.5645161290322579 0.0 6 1.3174135322073002 1.1580489920209398 1.3174135322073002 1.1580489920209398 4 - 0.333333333333333 0.963112080475477 HCT116-stranded 1.0 101459 AGCTGGCTGTGACCCAGCGGAAGGAGGAGGAGCCCAGTAGCAGCAGCGTTTTCAATCAGAATGACCCTTGGGCCCCCACTGTGGATTTCAGTGACTTCATCAACAATGAGACCATTGCTGGAAAG|GTGAATGCATCATCTTCAAGGTCGGCTCGAACATCTCTTCCTGAGAAGTCTTCCTAGATGTGTCCAGGTTGGAGAGGATTCTTCCCCAGGTACACGAGGGAAGCACATCCCCCTTCTGGAACCCTCAGTCTCTTCCAGT 13 0.908719060358368 0.892134716836831 0.39592972850934105 Y Y 3.52361324642271 3.5737384367554905 3.52361324642271 0 0.0 0.0 Y 0.0 N N 2143 335 ENSG00000131471 ENSG00000260105 + - 17 17 41010147 41026386 coding intron AOC3 AOC4 41003201 41017939 + + 0.0 41007590 41018124 + - N 0.442865901377758 0.167893518326499 N SA539 1 0.5645161290322579 1.0 1 0 1 N Y 0.0 0.5645161290322579 5 1.14742468934185 1.3174135322073002 1.3174135322073002 1.14742468934185 4 15 0.8 0.986847170228374 HCT116-stranded 1.0 179447 TATTGAGAATCTGCCCTTGCAGCTTTTCCTATGCACTAAACTACATTATTTGGATCTAAGCTATAACCACTTGACCTTCATTCCAGAAGAAATCCAGTATCTGAGTAATTTGCAGTACTTTGCTGTGACCAACAACAAT|AAACATGATTCCCGTGACAGAATTCCGGCAGTTCTCTGAGCAGCAGCCTGCCTTCCGAGTGCTGAAGCCATGGTGGGATGTGTTTACCGATTACCTCTCAGTAGCCATGCTCATGATCGGCGTGTTTGGATGTAC 13 1.0 0.5850118238733389 0.4909756256887821 Y Y 3.5497555543369104 3.6868062714637406 3.5497555543369104 4 0.992619528619529 0.0 Y 0.0 N Y 2630 5160 ENSG00000197147 ENSG00000171488 + - 1 1 90063423 90398809 coding utr5p LRRC8B LRRC8C 89990395 90098631 + + 0.0 90050348 90152029 + - N - - N SA539 2 0.0 1.5 1 3 1 N Y 0.0 0.0 6 1.3174135322073002 1.2005462027373002 1.3174135322073002 1.2005462027373002 4 - - 0.9372300210944192 HCT116-stranded 1.0 548389 CTAAATAAGACATATAAGAACTCTGAAGTTGGAATAGATTTGACTGTATTAAATGTTGGCGAGAGACTCTCTTTGATACATTAAAAAAACTGTTTGCAGAAGCAGTTCTGTGGAAGAGACTGGAATAATTATGGCCGGAAAACAAGTACCCGTTTTAA|ATCTTTCACCAGGCATCAGGGAATCAAAGATGACTGAAACGTGCTTTTGACCTTACTCAACCCTCTGCTGAGGGAGATGGAGGCAGAAACAGACTATCAGAATGCCACATGGTAAGTTTGTGATCAAGATAT 6 1.0 0.19124715013253 0.20414689511895887 Y Y 3.5319270478477 3.31063524818594 3.31063524818594 0 0.0 0.0 Y 0.0 N N 848 749 ENSG00000164338 ENSG00000214944 + - 5 5 72877794 73237818 utr3p upstream UTP15 ARHGEF28 72861268 72921983 + + 0.0 72876083 72910002 + - N - - N SA539 1 1.0 1.0 1 0 1 N Y 0.0 1.0 6 1.61489400722186 1.11555178130457 1.61489400722186 1.11555178130457 4 - - 0.909048507221847 HCT116-stranded 1.0 231 GCGCAGCCGCGGTGGGAGGAGGCACCGGCCGCGCGGCGGGAGGAGGTGCCGGCCGAGCACCGCAGACAGCGCCGGGAAGATGAGCACGGAAGGTGGTGGCCGTCGCTGCCAGGCACAAGTGTCCCGCCGCATCTCCTTCAGCGCGAGCCACCGATTGTACAG|ACCCAATTTATCTTCAGGCTGGAAAAAGAAAAGGAAGGCCTGATGAAAACCGTGTATTTGGCTTTGTTTACATTAATGAAGTGATTGGACAGAAAAAGTCACAATGACTTTTTTCT 8 1.0 0.658677571863501 0.28538291692680395 Y Y 3.5514509715161 3.31894904961092 3.31894904961092 0 0.0 0.00358422939068093 Y 0.0 N N 1137 63 ENSG00000150787 ENSG00000250303 + - 11 11 112140678 112233257 coding downstream PTS RP11-356J5.12 112097088 112141472 + + 0.0 112097249 112246269 + - N - - N SA539 1 0.0319148936170213 1.0 1 0 1 N Y 0.0 0.0319148936170213 5 1.18992190005821 0.99868445183457 1.18992190005821 0.99868445183457 4 - - 0.9804552517427492 HCT116-stranded 1.0 532020 GGAAGCCCATGACCACTAAGGACCTGCTGAAAAAGTTCCAGACCAAGAAGACAGGGCTGAGCAGCGAGCAGACAGTGAACGTGTTGGCCCAGATCCTCAAGCGACTCAACCCCGAGCGCAAGATGATCAACGACAAAATGCACTTCTCCCTCAAGGA|GCACCCACCGCCCCCTTGCCCGCCTGCGCCGAGCCCTGTCTGGTCCATGCCAGCTGTGGAGCCTGACCCTGTCCGTGGCAGAGCTAGGCCTGGGCTACGCCTCAGAGGAGAAGGTCATCTTCCGCTACTGCGCCGGCAGCTGCCCCCGTGGTGCCCGCA 41 1.0 0.992840223928936 0.657158931422558 Y Y 3.48912663185998 2.93698502519452 2.93698502519452 2 0.0 0.0 Y 0.0 N N 10937 52 ENSG00000125651 ENSG00000125650 + - 19 19 6393291 6375860 coding coding GTF2F1 PSPN 6379580 6375305 - - 0.0 6380296 6375627 - + N - 14.5570079883805 N SA539 1 0.0 1.0 1 0 1 N Y 0.0 0.0 14 2.1248605358182298 1.4342808616773102 2.1248605358182298 1.4342808616773102 4 - 0.0714285714285714 0.9818038482458 HCT116-stranded 1.0 348601 CAGAGCACAATAAGAAAGGAACCAAGGAAAGGACAAATGGTGATATTGTTCCAGAACGAGGGGACATCGAGCATAAGAAGCGGAAAGCTAAGGAGGCAGCCCCAGCCCCACCCACCGA|CGTCTGTTCCTCACACACCCCGCCCAAGGACGTGCCTGGCAGCGGCCTGGTGCTCCCCGCCGCAGCCACCTCACCCTTGGGTTTCTGTGGCCCTGCAGTTCCTCCGTGTCACAAAGCAGTACCTGCCCCACGTGGCGCGCCTCTGTCTGATCAGCACCTTCC 18 1.0 0.7126450881202759 0.42369199846431 Y Y 3.04743877366054 3.52361324642271 3.04743877366054 2 0.9915555823632308 0.0 Y 0.00355871886120995 N Y 1811 15355 ENSG00000148300 ENSG00000148248 + - 9 9 136283164 136242970 coding intron REXO4 SURF4 136271186 136228325 - - 0.0 136279785 136234419 - + N - 1.64578097823084 N SA539 2 0.0 1.14285714285714 1 1 1 Y Y 0.0 0.0 7 0.934938635760023 1.6786398232964 1.6786398232964 0.934938635760023 4 - 118.857142857143 0.9602263820127908 HCT116-stranded 1.0 330846 ATTATGATCAAGAACAGTTTGCTGATAACCAAATACCACTGTTGGTAATAGGGACTAAACTGGACCAGATTCATGAAACAAAGCGCCATGAAGTTTTAACTAGGACTGCTTTCCTGGCTGAGGATTTCAATCCAGAAGAAATTAATTTG|CTTAGATGGAAACCATTTGAGATTCCAAAAGCATCTCAGAAGAAAGTAGACTTTGTGAGTGTAAGTCAGTCCCATCCACACCCTCCCTACTGCTCTCCTCTCTTCTGTGGTGAGTGAGCCAACCATTTGCAGCCTGAATGCCAAGCAGAAGCAGCCCTATCAGGAGGCAGCAGAG 8 0.7568578145573058 0.666690669758336 0.0512619615964774 Y Y 3.3519080808638 3.44615838200292 3.3519080808638 0 0.0 0.0 Y 0.0 N Y 2184 52 ENSG00000144840 ENSG00000113924 + - 3 3 120461840 120401418 coding coding RABL3 HGD 120405528 120347020 - - 0.0 120417270 120371498 - + N - 0.502627912048781 N SA539 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 7 1.34928644024458 1.50865098043095 1.50865098043095 1.34928644024458 4 - 0.285714285714286 0.950478081182605 HCT116-stranded 1.0 498571 ATGGCGGCCCCAACGGCCGTCCAGGACGTGGAGCGAAATGAGCTCGGGCGCTGACGGCGGCGGTGGCGCTGCGGTGGCGGCGCGGTCGGACAAGGGCAGTCCCGGGGAGGACGGTTTCGTCCCGTCGGCGCTGGGGACCCGCGAGCA|GGAGTTGACCACATTTGGCCATTTCCCAGAAGGGCCCCACCCCAAGGGTGAGTGGCCAATGGGGAGCTGTTTCTGCTGACATCAATTCCCCAGGAGGTACTCACCCCAAGTCTGCCCAAGTGAAGATG 14 1.0 0.4963735703627461 0.8709915315371141 Y Y 3.21700744166278 3.24897325593912 3.21700744166278 7 0.99221580615942 0.0 Y 0.0 N Y 897 5205 ENSG00000203791 ENSG00000189319 + - 10 10 126480446 126432838 coding utr5p METTL10 FAM53B 126436721 126307861 - - 0.0 126480293 126395456 - + N - - N SA539 1 0.040650406504065005 1.0 1 0 1 N Y 0.0 0.040650406504065005 8 0.9243143330809308 1.30678922952821 1.30678922952821 0.9243143330809308 4 - - 0.941881822302097 HCT116-stranded 1.0 462873 GAATCTGGTGCAAAAGAGGTACACATTCGAGTAGCTTCACCACCAATTAAATATCCATGCTTCATGGGAATAAACATTCCTACAAAAGAAGAGCTCATTGCCAATAAACCAGAATTTGATCACCTTGCAGAATATCTAG|GTGATGTTTTTATTCTCACCTTATGAACGAGAATACTGCGGCTCAAAATTCAAGAGTCTTGCCCAGAGTTTTTTGGCAAGTACGAAAGGGTTATGGCTCCAAACTGGTTAGCTCCGAAGTCCTTGCAAACCCTGTCCGAGACCATGCGCGACCCCAAGGAGCGCCTGAG 25 1.0 0.959366791144827 0.723164958620203 Y Y 3.5110433747387795 3.62295434849776 3.5110433747387795 0 0.0 0.0 Y 0.0 N N 6128 822 ENSG00000128059 ENSG00000157426 + - 4 4 57301781 57253666 coding upstream PPAT AASDH 57259528 57204456 - - 0.0 57262785 57253962 - + N - - N SA539 2 0.729559748427673 2.0 2 11 1 N Y 0.0 0.729559748427673 11 1.3811593482818505 1.6892641259755 1.6892641259755 1.3811593482818505 4 - - 0.910621932578804 HCT116-stranded 1.0 231948 CTCCAGTGCCTGTGGGGCTGGAGGTGAAGTTGGGGGCCCTGGTGCTGCTGCTGGTGCTCACCCTCCTCTGCAGCCTGGTGCCCATCTGTGTGCTGCGCCGGCCAGGAGCTAACCATGAAGGCT|CAGGGGACTCCTCTCCAGGTTTCTCTAAGGAGATTGCAGCAGCCCTGGCCGGAGTGCCTGGCTTTGAGGTGTCAGCAGCTGGATTGGAGCTAGGGCTTGGGCTAGAAGATGAGCTGCGCATGGAGCCACTGGGCCTGGAAGGGCTAAACATGCTGAGTGACCCCTGTGCCCTGCTGCCTGATCCTGCTGTGGAGGAGTCATTC 32 0.645913291023511 0.9060869480276592 0.732069091026614 Y Y 3.71145150129163 3.5184919402632304 3.5184919402632304 0 0.991894781333134 0.0 Y 0.0 N Y 2179 1980 ENSG00000143570 ENSG00000160741 + - 1 1 153940188 153931101 coding coding SLC39A1 CRTC2 153931575 153920145 - - 0.0 153935005 153920805 - + N - - N SA540 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 9 1.09052802050867 1.82496525881042 1.82496525881042 1.09052802050867 4 - - 0.9512808267289642 HCT116-stranded CGHSA0331 5.0 697234 ACCCGGAGCCGCCCCGGGGGGCGCCTCGCCCGCCTCCTCCTCCTCAGCCGCCTCGTCCCCGTCCTCGGGCCGCGCCCCCGGCGCCGCGCCCTCCGCCGCCGCCAAGAGCCACCGCTGTCCCTTCCCGGACTGCGCCAAAGCCTACTACAAGTCCTCGCACCTAAAGTCGCACCTGCGGACGCACAC|AGGGCTGGGTTACGACCCCTACAACCCTGAGCTGCCCAAGCCCCCCGCGCAGAGGGAGAATGGCACCCTGGGCCTGGGGGAGGAGCCGCGCCCGGATGTGCTGGAGTTGGAGCTGGTCAACCAGGCCATCGAGGCCGTGCGCAGTGAGGTGGAGCTGGAGCAGCGGCGCTACCGGGAGCTGCTG 25 0.6811170244646011 0.860503228120837 0.457449502953739 Y Y 3.5246463161926003 3.37023110089298 3.37023110089298 0 0.0 0.0 Y 0.0 N Y 4693 3610 ENSG00000129911 ENSG00000079313 + - 19 19 1863567 1848452 coding intron KLF16 REXO1 1852399 1815248 - - 0.0 1863040 1828630 - + N - 9.10089973792149 N SA540 1 0.390625 1.0 1 0 1 Y Y 0.390625 0.0 14 2.13654469324147 1.82496525881042 2.13654469324147 1.82496525881042 4 - 0.428571428571429 0.9552321008572472 HCT116-stranded 5.0 695368 GAGGAGTGGGAACAGCTGGACCTGGCCCAGAGGACACTGTACCGAGAGGTGACACTGGAGACCTGGGAGCATATTGTCTCCCTGGGGCTTTTCCTTTCCAAATCTGATGTGATCTCTCAGCTGGAGCAAGAAGAGGACCTGTGCAGGGCAGAGCAGGAGGCCCCCCGAG|AAATTTGGAGACAGACAACTTGTCACGCATACAGGGAAAATGACATTTGAAGACAAAGTCAGACATCTACAAGCCAAGGAATGCCAGAGATTGCCAGCAAACCACCAAAAACTAAGGAAAGGGATGGAAC 53 1.0 0.752850422743382 0.346528936671837 Y Y 3.07717480442437 3.4106386976703 3.07717480442437 0 0.992333333333333 0.0 Y 0.992333333333333 N N 2302 630 ENSG00000198131 ENSG00000083842 + - 19 19 58775010 58807254 coding upstream ZNF544 ZNF8 58740070 58790317 + + 0.0 58758160 58785732 + - N - - N SA540 1 1.0 1.0 1 0 1 N Y 0.0116959064327485 1.0 17 1.90286011741818 1.27970124855609 1.90286011741818 1.27970124855609 4 - - 0.967996764870886 HCT116-stranded 5.0 498149 AAGGCAAGAATGCAGACCCAATCCTCATCTCCTTGAAGCACGGGTACATTCCAGGCAAAAACAGGGATCTCAAGGTGGTCAAGAAGAACATTCTGGATAGCAAGCCCACTGCAAACAAGAAGTGCGACCTGATCAGCATCCCCAAGAAAACCACAGACACGGCCAGTGTG|GTGCCATGCCTCTGCAACTCCTCCTGTTGCTGATCCTACTGGGCCCTGGCAACAGCTTGCAGCTGTGGGACACCTGGGCAGATGAAGCCGAGAAAGCCTTGGGTCCCCTGCTTGCCCGGGACCGGAGACAGGCCACCGAATATGAGTACCTAGATTA 88 1.0 0.8005479962097021 0.446495759728901 Y Y 3.3948364779275098 3.35926336043241 3.35926336043241 1 0.0 0.0 Y 0.0 N Y 8275 2133 ENSG00000110880 ENSG00000110876 + - 12 12 109125372 109027735 coding coding CORO1C SELPLG 109038885 109015686 - - 0.0 109042381 109018088 - + N - - N SA540 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 33 1.9139879543621496 1.80270958492249 1.9139879543621496 1.80270958492249 4 - - 0.992297486893727 HCT116-stranded 5.0 498267 CATAGAGGCAAGTGGGGGAGGAGCGTTCCTTGTCCTCCCTCTGCACAAGACTGGTCGAATTGACAAATCTTACCCTACAGTATGTGGCCACACAGGACCAGTGCTGGACATAGACTGGTGCCCACATAACGATCAGGTCATTGCCAGCGGTTCAGAGGACTGCACGGTCATGG|TGCCATGCCTCTGCAACTCCTCCTGTTGCTGATCCTACTGGGCCCTGGCAACAGCTTGCAGCTGTGGGACACCTGGGCAGATGAAGCCGAGAAAGCCTTGGGTCCCCTGCTTGCCCGGGACCGGAGACAGGCCACCGAATATGAGTACCTAGATTATGATTTCCTGCCAGAAACGGAGCCTCC 31 1.0 0.8012704957157629 0.481834800578018 Y Y 3.64081336021051 3.30434773350738 3.30434773350738 0 0.0 0.00280112044817915 Y 0.00280112044817915 N Y 8275 2133 ENSG00000110880 ENSG00000110876 + - 12 12 109125372 109027735 coding coding CORO1C SELPLG 109038885 109015686 - - 0.0 109072048 109018088 - + N - 46.2699855079667 N SA540 1 0.0 1.0 1 0 1 N Y 0.0 0.0 15 1.95849930213801 1.90286011741818 1.95849930213801 1.90286011741818 4 - 0.133333333333333 0.9874267977196768 HCT116-stranded 5.0 498150 CTTGGACGATATGCATTCAGACATGATTTACAATGTGAGCTGGAACCGGAATGGCAGTCTGATCTGCACAGCTTCCAAAGACAAGAAAGTGAGAGTCATTGATCCCAGGAAACAAGAGATTGTTGCT|GTGCCATGCCTCTGCAACTCCTCCTGTTGCTGATCCTACTGGGCCCTGGCAACAGCTTGCAGCTGTGGGACACCTGGGCAGATGAAGCCGAGAAAGCCTTGGGTCCCCTGCTTGCCCGGGACCGGAGACAGGCCACCGAATATGAGT 10 1.0 0.483766172500158 0.5833129191795949 Y Y 3.42360979693834 3.35926336043241 3.35926336043241 0 0.0 0.0 Y 0.0 N Y 8275 2133 ENSG00000110880 ENSG00000110876 + - 12 12 109125372 109027735 coding coding CORO1C SELPLG 109038885 109015686 - - 0.0 109052514 109018088 - + N - - N SA540 1 0.0 1.0 1 0 2 N Y 0.0 0.0 5 1.22406206383626 1.6691755415949 1.6691755415949 1.22406206383626 4 - - 0.9934466222523172 HCT116-stranded 5.0 231814 GTGGTTGGAGCAGGAGGTGGCACGGCAGGGCCTGGAGGGCTCCCTATGAGTGGCGGAGCAGGCCCAGGAGGCGCTGGAGCAACAGCTCCCCACACTGCACCATGAGCTCAGTTGGCTGCAGGAGCAGCTAGCAC|AGGCAATCTGAAGGCAAATCCTGTTTAGACCCAGGCGAAGGTTCCCGGTGACCCGGGCTCTCACCAGCCAATTGTCCCTTGCCGTCCTCCTGAGGGTGCCTGGAGCTTAAGCACTGTGTGCTCTTGGCCTCCACACTGGGGATGCCGCTGACTCCCACTGTCCAGG 20 1.0 0.564882097113245 0.42525035579210496 Y Y 3.42204236083514 3.631930497332061 3.42204236083514 0 0.992562106411464 0.0 Y 0.0 N Y 1249 2237 ENSG00000215908 ENSG00000219481 + - 1 1 16971178 16940083 intron intron CROCCP2 NBPF1 16944751 16888818 - - 0.0 16952270 16935274 - + N - - N SA540 6 0.134969325153374 2.5 1 7 1 N Y 0.0 0.134969325153374 8 1.40210745493971 1.81383742186645 1.81383742186645 1.40210745493971 4 - - 0.917094168367069 HCT116-stranded 5.0 378811 TGCCCTCCTGAGGCTCCACATCTATGTATCCCATGGAAACCAGAGTCACAAATGGAGACAGATTCAGAGACTCAGCCTGAAAGGAGACAGAAGAGGCCGAGAGCTACAGGTTGCATGGCCCAGGATGGCAAAG|ACTCCACGGTTAATATCACAGCAGCTGGACAGAGACAAGAGCAGAGTCAGGCATCCTGGGCTGGCAGCTGCCTGTTGGGACTACACAGCCCCAAGCCAGCTCCCTGTCTCCCTAGGCAGAACACACGTTGGCAGAGACACTTGCT 15 1.0 0.801815401801507 0.470362053738052 Y Y 3.46977054206091 3.72824693801095 3.46977054206091 0 0.0 0.0 Y 0.0 N N 1253 397 ENSG00000196155 ENSG00000135740 - + 16 16 67323402 67306093 utr5p coding PLEKHG4 SLC9A5 67311413 67271586 + + 0.0 67311497 67300014 - + N - 0.118369632229255 N SA540 1 0.0 1.0 1 0 2 N Y 0.0 0.0 6 1.15729504217246 1.32421259633195 1.32421259633195 1.15729504217246 4 - 0.666666666666667 0.9912749545298358 HCT116-stranded 5.0 454487 GAAAGGGAATCAGGCCTGTAGCTCGGATATGCACTGGCTCATCAACAAGTGCACTCACAGGGGTAGCTGTCAACTGGATCATTTTTTTAGTGTGGCACCTGGGATGATTCTTCAGGAATATCTTCAGCAAAACCTCAAA|ACCTGAATCGAGACCAAAATTCTCTACATGGTGTCCCTGAGACTGTCCACATGAAGACTCTTCTGGTAATGCCCGACACAGATCGCGCCGCCATCTTCGATGAGATCCACGGGCCTGAGCGCAGCCTTCAGCCAGCAGTGACGCGCCCAGA 90 1.0 0.35511525352781 0.528249583233968 Y Y 3.44615838200292 3.6035982586987 3.44615838200292 1 0.0 0.0 Y 0.0 N Y 5433 1131 ENSG00000136881 ENSG00000136897 - + 9 9 104145801 104160896 utr5p intron BAAT MRPL50 104122699 104149915 - - 0.0 104133745 104160783 + - N - 0.446076799269548 N SA540 2 0.0 1.2680412371134 1 26 1 N Y 0.0 0.0 97 1.635792030763 1.52451366132334 1.635792030763 1.52451366132334 4 - 1.65979381443299 0.948826792929029 HCT116-stranded 5.0 454715 TTACGTTAAAGAAGTTTTTGGTTCATCTCTTCCTAGTAATTGGCAAGACATCTCCCTGGAAGATAGTCGTCTAAAGTTCAATCTTCTGGCTCATTTAGCTGATGACTTGGGTCATGTAGTCCCTAACTCCAGACTCCACCAGATGTGCAG|GGTTTTGAGGTTTTGCTGAAGATATTCCTGAAGAATCATCCCAGGTGCCACACTAAAAAAATGATCCAGTTGACAGCTACCCCTGTGAGTGCACTTGTTGATGAGCCAGTGCATATCCGAGCTACAGGCCTGATTCCCTTTCAGATGGTGAGTTT 17 0.942909018105326 0.9164439341567678 0.6965817751713039 Y Y 3.51207644450867 3.48912663185998 3.48912663185998 3 0.0 0.0 Y 0.0 N Y 1131 5433 ENSG00000136897 ENSG00000136881 + - 9 9 104160896 104145801 coding utr5p MRPL50 BAAT 104149915 104122699 - - 0.0 104152859 104133745 - + N - - N SA540 2 0.0194805194805195 1.18181818181818 1 2 1 N Y 0.0194805194805195 0.0 11 1.71368688937076 1.70255905242679 1.71368688937076 1.70255905242679 4 - - 0.9810175077676272 HCT116-stranded 5.0 607827 ATAGGAAAGCAGGATCACCAGCAAGAGAACGAGAGCACAGATACATGGAATCAGGACCAGCAATAGGAACCGGAGGAGGTTAGCAGTCGCCAGCTTCTGAGAGCAGCCATTGCCCATGTTATTGTCATCAGCTCTCAAG|ACCTGTTGTCTTCGTTTTTCTTCTTCAAGAGCAGCTTTGGCTTCTGCTTCTTTTATCTGTTTATACACATACAAAAGTCAATTTACAATTTAGTCATCACATTTTATATGGAATTTTAACATCTACCCATCCAGGTTCTAT 12 1.0 0.269716250908895 0.28300974333015805 N Y 3.44143830342756 3.3112577428018906 3.3112577428018906 1 0.992831357689649 0.0 Y 0.390665403620164 N Y 324 318 ENSG00000145244 ENSG00000170448 - + 4 4 47840123 47916653 coding intron CORIN NFXL1 47596015 47849257 - - 0.0 47809064 47853112 + - N - 0.810748160344176 N SA540 1 0.0 1.0 1 0 1 N N 0.0 0.0 6 1.59128068298713 1.35759610716385 1.59128068298713 1.35759610716385 4 - 1.33333333333333 0.948702519552742 HCT116-stranded CGHSA0792 5.0 573158 CATTGCTGTACATTGGCTGGGATAAGCACTATGGCTTTCAGCTCTATCAGAGTGACCCTAGTGGAAATTACGGGGGATGGAAGGCCACATGCATTGGAAATAATAGCGCT|TGCAGATGGACGTTTTGAAGGGACCAGTACGAAAACAGTCATCAGGTACAATGGCACTGTCACCTGGACTCCACCGGCAAACTACAAAAGTTCCTGTACCATAGATGTC 7 0.105208758894932 0.268671512508587 0.434012288929529 Y Y 3.43681151080804 3.52936639476796 3.43681151080804 3 0.0 0.0 Y 0.0 N Y 14654 1040 ENSG00000041357 ENSG00000169684 + - 15 15 78841604 78887611 coding coding PSMA4 CHRNA5 78832747 78857862 + + 0.0 78838106 78882147 + - N - - N SA540 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 5 1.36872394410781 0.767820749133652 1.36872394410781 0.767820749133652 4 - - 0.923975498389343 HCT116-stranded 5.0 697967 GGGTGATCTTCTCCTGCCGCCAGGACGAGGGCCGCCGTGACTGGCTGTGCTTCACCAGCAGGTGCGAGCAGCGGACCCTGGCAGGCTCCCCCTGCCCGTTTTTGCCACCACTGCTGCTGTTGCCGCTGGGCCGCTCCCACTGGCTGGCGTTAGTGATGTGGTTGAAGTAGTACACTCGGCCT|CGAATCGCCTCGAACCTGCCGACGCCACCAGCTCCTCACCCGAGCGCTGAACCCCGGTCGCAGTTAACGCTAGGAACCGGAAGCGGAAGTTAAAGTTCGAGGCCGG 44 1.0 0.777720466372213 0.8231774934742191 N Y 3.77530342425761 3.36819965647335 3.36819965647335 0 0.0 0.0 Y 0.0 N Y 2037 5737 ENSG00000127445 ENSG00000198258 - + 19 19 9960358 9940791 coding utr5p PIN1 UBL5 9945933 9938568 + + 0.0 9949112 9938660 - + N - 4.02456750761463 N SA540 2 0.0 1.11764705882353 1 2 1 N N 0.0 0.0 17 1.96962713908198 0.867971281629346 1.96962713908198 0.867971281629346 4 - 183.411764705882 0.9855983653154642 HCT116-stranded 5.0 696978 TGACCCCGCCCCTGGATTCTGGAAGACCTCACCATGGGACGCCCCCGACCTCGTGCGGCCAAGACGTGGATGTTCCTGCTCTTGCTGGGGGGAGCCTGG|GCAGTGAGTACACCGTGCACCTGGGCAGTGATACGCTGGGCGACAGGAGAGCTCAGAGGATCAAGGCCTCGAAGTCATTCCGCCACCCCGGCTACTCCACACAGACCCATGTTAATGACCTCATGCTCGTGAAGCTCAATAGCCAGGCCAGGCTGTCATCCATGGTGAAGAAAGTCAGGCTGCCC 33 1.0 0.587779037380556 0.80218209449334 Y Y 3.52105259334297 3.46654754157187 3.46654754157187 0 0.758426368952685 0.0 Y 0.0 N Y 967 5964 ENSG00000129455 ENSG00000169035 + - 19 19 51504958 51487320 coding intron KLK8 KLK7 51499264 51479729 - - 0.0 51504354 51483743 - + N - 3.27715036367479 N SA540 1 0.0 1.0 1 0 1 N Y 0.0 0.0 15 0.7566929121896858 1.96962713908198 1.96962713908198 0.7566929121896858 4 - 32.9333333333333 0.98626440912331 HCT116-stranded 5.0 697661 GAATCAGTAGGTGACCCCGCCCCTGGATTCTGGAAGACCTCACCATGGGACGCCCCCGACCTCGTGCGGCCAAGACGTGGATGTTCCTGCTCTTGCTGGGGGGAGCCTGGGC|AGCCCAGGGTGACAAGATTATTGATGGCGCCCCATGTGCAAGAGGCTCCCACCCATGGCAGGTGGCCCTGCTCAGTGGCAATCAGCTCCACTGCGGAGGCGTCCTGGTCAATGAGCGCTGGGTGCTCACTGCCGCCCACTGCAAGATGAATGAGTACACCGTGCACCTGGGC 43 1.0 0.657780451088645 0.618444691257826 Y Y 3.30232144676095 3.44615838200292 3.30232144676095 0 0.9911027568922308 0.0 Y 0.0 N Y 967 5964 ENSG00000129455 ENSG00000169035 + - 19 19 51504958 51487320 coding coding KLK8 KLK7 51499264 51479729 - - 0.0 51504354 51485170 - + N - - N SA540 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 19 0.934738303293142 1.8806044435302496 1.8806044435302496 0.934738303293142 4 - - 0.9914584709774852 HCT116-stranded 5.0 408871 GGCCGTTAGCGCGGCTTCGGCGGTTGTCTTGGAGAAGCAAGATGGCGGCGACGGCGGCCGCAGTGGTGGCCGAGGAGGACACGGAGCTGCGGGACCTGCTGGTGCAGACGCTGGAGAACAGCGGGGTCCTGAACCGCATCAAG|AGTCACCTCTACTTTCCTGCTACCGCTGCCTGTGAGCTGAAGGGGCTGAACCATACACTCCTTTTTCTACAACCAGCTTGCATTTTTTCTGCCCACAATGAGCGGGGAATCAATGAATTTCAGCGATGTTTTCGACTCCA 24 1.0 0.8777300337558149 0.625316930814998 Y Y 3.63655728995158 3.37758638046158 3.37758638046158 0 0.992882293762575 0.0 Y 0.0 N Y 488 1497 ENSG00000213066 ENSG00000112486 + - 6 6 167455906 167553184 coding utr5p FGFR1OP CCR6 167412670 167525295 + + 0.0 167413002 167549526 + - N - - N SA540 1 0.0 1.0 1 0 1 N Y 0.0 0.0 17 1.82496525881042 1.49113015049144 1.82496525881042 1.49113015049144 4 - - 0.98929475014735 HCT116-stranded CGHSA0270 5.0 104410 GTAAGAGAAATAATTATCAATGCTGTTCGGATAGAACAGGAGTTCCTCACTGAGGCCTTGCCTGTGAAGCTCATTGGGATGAATTGCACTCTAATGAAGCAATACATTGAGTTTGTGGCAGACAGACTTATGCTGGAACTGGGTTTTAGCAAGGT|GCTGGGAGACCGTGAAGTGCAAAGCAGATGGAGTCCAGGCCCTCGGGGAGACAGCACGCCAGTGAGGGAGATGGAGACCAATCACCCACCCAGTGTGCGGGGATGAGAAGCTCGGGAAGGTC 39 1.0 0.683709200330522 0.374763276514484 Y Y 3.51360402781852 3.44040523365767 3.44040523365767 1 0.991832763297559 0.0 Y 0.6406415850925821 N Y 31082 662 ENSG00000171848 ENSG00000163009 + - 2 2 10271545 10351851 coding utr5p RRM2 C2orf48 10262455 10281509 + + 0.0 10269281 10281981 + - N - - N SA540 2 0.918181818181818 1.41176470588235 1 7 1 N Y 0.0 0.918181818181818 17 1.635792030763 1.22406206383626 1.635792030763 1.22406206383626 4 - - 0.948054192435453 HCT116-stranded CGHSA0554 5.0 381972 AGGCTTGGTCTGGAGGCTCCAGTGGGAGAGGTTAACACACACCAAGCAGTCGCTGCAGGCACCTTCCCCTACCCTCGCCTTTTTTGGTATCTTCCTCGGCCAGATGCAGGCAGCTGGAGAAGTCCTTCCCCACCCTTGGAC|CCGAGAGCAGAGCGGGTCCAGTGCGCAGCGTACGGACGGCGCCCACCCCCAGCTGCCAGGGCCTCGGCGGGCAGGGCGCGGCGGGTGACGGGACCGCGCGCAGGGTGCAGAGCAGGGCCCGCACGCTCCGCACCACTCGCAGCGCCATGTTCGCAGGGGTGCGGGG 22 0.4142897311206 0.561600804893182 0.624383230077873 Y Y 3.5429693362217702 3.28336658454601 3.28336658454601 1 0.992930828037211 0.0 Y 0.0 N Y 1336 7942 ENSG00000166455 ENSG00000140905 - + 16 16 81110872 81130008 coding coding C16orf46 GCSH 81087102 81115566 - - 0.0 81095743 81129736 + - N - 0.909238359136676 N SA540 3 0.0 2.45454545454545 2 11 2 N Y 0.0 0.0 11 1.5133858243793703 1.75819823714662 1.75819823714662 1.5133858243793703 4 - 84.3636363636364 0.911949207673632 HCT116-stranded 5.0 381973 GGTTCTGTTTCTTCTGTGAACTGAATTTCATTATTTTCAGCATTTTCTAAGTCAGTCTCATTTTTCTGACAGAGATCCATTACTGTGATGCTTGCTTAAAGTTTTTAACATCTTCTTG|CCGAGAGCAGAGCGGGTCCAGTGCGCAGCGTACGGACGGCGCCCACCCCCAGCTGCCAGGGCCTCGGCGGGCAGGGCGCGGCGGGTGACGGGACCGCGCGCAGGGTGCAGAGCAGGGCCCGCACGCTCCGCACCACTCGCAGCGCCATGTTCGCAG 17 1.0 0.488654074168188 0.7214792013880129 Y Y 3.2793317813189 3.28336658454601 3.2793317813189 4 0.9915562403698 0.0 Y 0.0 N Y 1336 7942 ENSG00000166455 ENSG00000140905 - + 16 16 81110872 81130008 utr5p coding C16orf46 GCSH 81087102 81115566 - - 0.0 81097598 81129736 + - N - 0.909238359136676 N SA540 4 0.0 2.6 2 5 2 N Y 0.0 0.0 5 1.03488883578884 1.68030337853886 1.68030337853886 1.03488883578884 4 - 185.6 0.9349830330358992 HCT116-stranded 5.0 230387 ATAAGAAATATTCAGCTTGGTTTCTTTGGAAGTATATTTGGATTAATGGGTGTATACATTTATGATGGAGAACTGGTATCAAAGAATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAG|CCTCAAGGAATAGGTTCTCCTAGTGTCTATCATGCAGTTATCGTCATCTTTTTGGAGTTTTTTGCTTGGGGACTATTGACAGCACCCACCTTGGTGGTATTACATGAAACCTTTCCTAAACATAC 14 1.0 0.495012207840171 0.0796901568587991 N Y 3.73233517440054 3.6669556681247206 3.6669556681247206 0 0.0 0.0 Y 0.0037878787878787797 N Y 1578 3771 ENSG00000117620 ENSG00000156875 + - 1 1 100492535 100548933 coding coding SLC35A3 HIAT1 100435345 100503653 + + 0.0 100480976 100515465 + - N - - N SA540 1 0.0 1.0 1 0 1 Y N 0.0 0.0 8 1.23518990078022 1.16842287911643 1.23518990078022 1.16842287911643 4 - - 0.968077736077766 HCT116-stranded 5.0 454856 ATGAGGATGGTGATGAGGGCAAAGAGGATCACGAACACTGCTGACCGCTGCTCTTTGTTGCTACTCATTTCTCTCCGGCGTCTGCTGAGGGGTAGGTGTCGGCGTCCTGCAGGTGGCCCTGGGGGCAGGGATGTGGGTTCA|CACCGGTTCTTGCCCGTCTCGTCCTGGAAGATCTGGTCGCAGTAGGCCATCATGCGCTCCGTGAAGGTGTACACCTGCAGGCCGGGGTACATCCTGGTGAGCTGCAGCAGCGTGCGGTAGGTGCGGCCGCCGAGCACCCGGTCCATGTGCCTGCCCTGGCCCCACACCATGTAGAG 30 1.0 0.70971989887502 0.525920969922505 Y Y 3.17511211436896 3.61720120015252 3.17511211436896 0 0.0 0.0 Y 0.0 N Y 1334 2748 ENSG00000160408 ENSG00000136840 - + 9 9 130667687 130679317 coding intron ST6GALNAC6 ST6GALNAC4 130647600 130670165 - - 0.0 130658611 130674547 + - N - 1.0825148675798 N SA540 2 0.0206896551724138 1.8125 1 13 1 N Y 0.0206896551724138 0.0 16 1.61353635687507 1.98075497602594 1.98075497602594 1.61353635687507 4 - 16.8125 0.954245301309178 HCT116-stranded 5.0 719838 GCCCCCGTCCCCGCCCCGGGGGCCGCCGCCACCCGCCTCCCACCATGGCTCTGAAGAGAATCCACAAGGAATTGAATGATCTGGCACGGGACCCTCCAGCACAGTGTTCAGCAGGTCCTGTTGGAGATGATA|AGTGAAGACATTTCCACCTGGACACCTGACCATGTGCCTGCCCTGAGCAGCGAGGCCCACCAGGCATCTCTGTTGTGGGCAGCAGGGCCAGGTCCTGGTCTGTGGACCCTCGGCAGTTGGCAGGCTCCCTCTGCAGTGGGGTCTGGGCCTCGGCCCCACCATGTCG 7 1.0 0.444385088737435 0.291287792934761 Y Y 3.65760879692984 3.47080361183081 3.47080361183081 5 0.992449579406101 0.0 Y 0.0 N Y 4338 1822 ENSG00000131508 ENSG00000171604 + - 5 5 139008018 139063467 coding utr5p UBE2D2 CXXC5 138906016 139026884 + + 0.0 138980020 139059949 + - N - - N SA540 1 0.246913580246914 1.0 1 0 1 N Y 0.246913580246914 0.0 6 1.71368688937076 1.65804770465093 1.71368688937076 1.65804770465093 4 - - 0.91959580948859 HCT116-stranded 5.0 230034 CAAGGCAGAAGAAATCTTGGAGAAGGGTCTAAAGGTGCGGGAGTATGAGTTAAGAAAAAACAACTTCTCAGATACTGGAAACTTTGGTTTTGGGATCCAGGAACACATCGATCTGGGTATCAAATATGACCCAAGCATTGGTATCTACGGCCTGGACTTCTATGTG|CTATTGAAATATTTGAAGAAACTCTCCACCCTGCCTATTACAGTAGACATTCTTGCGGAGACTGGGGTTGGGAAAACAGTAAATAGCTTGCGAAAACACGAGCATGTTGGAAGCTTTGCCAGGGACCTAGTGGCCCAGTGGAAGAAGCTGGTTCCTGTGGAA 83 0.980646167528158 0.8700624679212192 0.34616466291018605 N Y 3.80041266240192 3.32320511986986 3.32320511986986 0 0.993845922923937 0.0 Y 0.993845922923937 N Y 34707 10935 ENSG00000142676 ENSG00000011007 + - 1 1 24022915 24088549 coding coding RPL11 TCEB3 24018269 24069645 + + 0.0 24021281 24075511 + - N - - N SA540 4 0.0 2.40816326530612 1 39 1 Y N 0.0 0.0 49 1.81383742186645 1.82496525881042 1.82496525881042 1.81383742186645 4 - - 0.9116115946614208 HCT116-stranded CGHSA0320 5.0 697726 TAGCCCTGTCCCCACTCACGTGGCTTCTCAGCGGGCTGCATGGAATGTCTGGTAGCTCACCACACTTCTGGCTTCCATTTGTCTTCACTCAACGTCAGGGTGGGGGAGTGGTGCTGGCCAATCACAGGAGAGAGC|CTGTTCCCACAGGCTCCATTATTCAAACTTTGGGGGAGGAAATCAGGGCTGGACAGATCATCAACTGCTGCTGCTGACAGACTGTGTTCCTGCCATGATGGGGACAGGCCTGCCCCAAACCAGGGTGGAGTGAAGGGGTCAGCCCA 21 0.941858954202198 0.635556387142496 0.3799501333966929 Y Y 3.22423474015539 3.44086924197409 3.22423474015539 0 0.0 0.0 Y 0.0 N N 4317 326 ENSG00000105341 ENSG00000177191 + - 19 19 41946622 41934635 utr3p utr5p ATP5SL B3GNT8 41937223 41931265 - - 0.0 41937997 41934624 - + N - 27.2479871175523 N SA540 1 0.0 1.0 1 0 1 N Y 0.0 0.0 5 1.32421259633195 1.39097961799575 1.39097961799575 1.32421259633195 4 - 0 0.9805780049627748 HCT116-stranded 5.0 181427 GTATCAGGTTGGGCAGCTTTACTCTGTTGCAGAAGCTAGTAAGAATGAGACTGGTGGTGGAGAAGGAATTGAAGTCTTAAAGAATGAACCTTATGAGAAGGATGGAGAAAAGGGACAGTATACGCACAAAATTTATCACCTAAAGAGC|CCACGACCTCCCTGCAAACAAGGCCTCAGCATCCCAGCCTGGCAGCCACTTGCAGTGCCTGTCTGTCCACTGCACAGACGACGTGGGTGACGCCAAGGCTCGAGCCTCCGTGCCCACCTGGCGGTCCCTGCATTCTGACATCTCCAACAGATTTGGGACATTCGTGGCT 17 1.0 0.473723991153614 0.516901749458113 Y Y 3.3576612292090497 3.25616070163838 3.25616070163838 0 0.0 0.0 Y 0.0 N Y 1054 4315 ENSG00000180957 ENSG00000169184 + - 22 22 28316122 28197486 coding coding PITPNB MN1 28202413 28144265 - - 0.0 28306952 28147084 - + N - - N SA540 1 0.0 1.0 1 0 1 N Y 0.0 0.0 9 1.68030337853886 1.75819823714662 1.75819823714662 1.68030337853886 4 - - 0.98586816565488 HCT116-stranded 5.0 134592 AAGTGTATAACTACAATCACCTAATGCCCACAAGGTACTCTGTGGATATCCCCTTGGACAAAACTGTCGTCAATAAGGATGTCTTCAGAGATCCTGCTCTTAAACGCAAGGCCCGACGGGAGGCCAAGGTCAAGTTTGAAGAG|AGGCCCTCCACGCCCTTCAGGAGGAGCAGGCCAGACTCAAGATGAGGCTGTGGGACCTGCAGCAGCTGAGAAAGGAGCTCGGGGACTCCCCCAAAGACAAGGTAAGGTGGGAGATCTGGTGTTGTTTGGTAAAAACGAGCTGGCGAGGCCGGGTGCGGTGGCTC 81 0.728542099763564 0.916417474511457 0.616320317085722 Y Y 3.3461549325185493 3.28655907981151 3.28655907981151 0 0.0 0.0 Y 0.0 N Y 27837 1160 ENSG00000131469 ENSG00000068079 + - 17 17 41154976 41166473 coding intron RPL27 IFI35 41150290 41158742 + + 0.0 41154800 41164196 + - N - 0.175836164945125 N SA540 2 0.107784431137725 1.42857142857143 1 3 2 N Y 0.0 0.107784431137725 7 1.64691986770696 1.85834876964232 1.85834876964232 1.64691986770696 4 - 2.71428571428571 0.9668014283645228 HCT116-stranded 5.0 135651 ATCAAAGATAAAATCTTTTGTGAAAGTGTATAACTACAATCACCTAATGCCCACAAGGTACTCTGTGGATATCCCCTTGGACAAAACTGTCGTCAATAAGGATGTCTTCAGAGATCCTGCTCTTAAACGCAAGGCCCGACGGGAGGCCAAGGTCAAGTTTGAAGAGAG|GCCCTCCACGCCCTTCAGGAGGAGCAGGCCAGACTCAAGATGAGGCTGTGGGACCTGCAGCAGCTGAGAAAGGAGCTCGGGGACTCCCCCAAAGACAAGGTCCCATTTTCAGTGCCCAAGATCCCCCTGGTATTCCGAGGACAC 78 1.0 0.8467947050870129 0.6707985968928621 Y Y 3.2693225627147204 3.28655907981151 3.2693225627147204 0 0.0 0.0 Y 0.0 N Y 27837 1160 ENSG00000131469 ENSG00000068079 + - 17 17 41154976 41166473 coding coding RPL27 IFI35 41150290 41158742 + + 0.0 41154800 41164196 + - N - - N SA540 5 0.0 1.6078431372549 1 21 2 N Y 0.0 0.0 51 1.89173228047422 1.54676933521127 1.89173228047422 1.54676933521127 4 - - 0.975761865993486 HCT116-stranded 5.0 541679 GGATTCTATACTGATGGAACGTCGAATTAGACCATGGATTAATAAGAAAATCATAGAATATATAGGTGAAGAAGAAGCTACATTAGTTGATTTTGTTTGTTCTAAGGTTATGGCTCATAGTTCACCCCAGAGCATTTTAGATGATGTTGCCAT|GAATGACAATAGAGAACGGCAGGAGCACAACGACAGACGGAGCCTTGGCCACCCTGAGCCATTATCTAATGGACGACCCCAGGGTAACTCCCGGCAGGTGGTGGAGCAAGATGAGGAAGAAGATGAGGAGCTGACATTGAAATATGGCGCCAAGCATGTGATCATGCTCTTTGTCCCTGTG 33 1.0 0.583272460258428 0.691142425925539 Y Y 3.4378445805779303 3.23693259291531 3.23693259291531 2 0.0 0.0 Y 0.0 N Y 14702 3971 ENSG00000119707 ENSG00000080815 + - 14 14 73588122 73690399 coding coding RBM25 PSEN1 73525144 73603126 + + 0.0 73581041 73637505 + - N - - N SA540 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 15 1.79158174797852 2.04752199768974 2.04752199768974 1.79158174797852 4 - - 0.9930127914371668 HCT116-stranded 5.0 541829 CTGATGGAACGTCGAATTAGACCATGGATTAATAAGAAAATCATAGAATATATAGGTGAAGAAGAAGCTACATTAGTTGATTTTGTTTGTTCTAAGGTTATGGCTCATAGTTCACCCCAGAGCATTTTAGATGATGTTGCCATG|ACCTAATCTGGGAGCCTGCAAGTGACAACAGCCTTTGCGGTCCTTAGACAGCTTGGCCTGGAGGAGAACACATGAAAGAAAGAACCTCAAGAGGCTTTGTTTTCTGTGAAACAGTATTTCTATACAGTTGCTCCAATGACAGAGTTA 33 1.0 0.43471192558281 0.311191615939762 Y Y 3.35463656781289 3.6868062714637406 3.35463656781289 0 0.0 0.0 Y 0.0 N Y 14702 3971 ENSG00000119707 ENSG00000080815 + - 14 14 73588122 73690399 coding utr5p RBM25 PSEN1 73525144 73603126 + + 0.0 73581041 73614503 + - N - - N SA540 1 0.0 1.0 1 0 2 N Y 0.0 0.0 15 1.48000231354747 1.5690250090992002 1.5690250090992002 1.48000231354747 4 - - 0.981180586435073 HCT116-stranded 5.0 654029 GCCCTCTGCCAGTCACTTTCCACCGAGCCTTTGACATGGTTCATGATCCAATGGCAGCTCTGGAGACCCTCTTAACCTTGGGATTTGAACGCGTGTTGACCAGTGGATGTGACAGTTCAGCATTAGAAGGGCTACCCCTAATAAAGCGACTCATTGAGCAG|AAATCACTCTTCTTCCATGTAGCCCATGTGCTTTAGGGAAGGCTGACCTTACCACAGCTTCAGGATGGGCCTGATTAATCCAAGAGTAACCTCATCCTTGTAAGGAATTGATTCAGGAATTTACACCACTGAGATACCAGGAGAAGTTTGC 17 0.778257384821877 0.579194418527575 0.789642737663925 Y Y 3.56129235625094 3.53768019619294 3.53768019619294 4 0.0 0.009796246535344827 Y 0.029600321604638 N N 908 1301 ENSG00000119929 ENSG00000023839 + - 10 10 101515891 101611949 coding upstream CUTC ABCC2 101462315 101542489 + + 0.0 101507147 101529388 + - N - - N SA540 1 1.0 1.0 1 0 1 N Y 0.0 1.0 7 1.89173228047422 1.4243631288276395 1.89173228047422 1.4243631288276395 4 - - 0.971390324215788 HCT116-stranded 5.0 596148 GCCAGGGCCAGTCGGCGTCCGGGTCGTCGGCGTGGAGCACGGTATTCCGCCACGTCCGGTATGAGAACCTGATAGCGGGCGTGAGCGGCGGCGTCTTATCCAACCTTGCGCTGCATCCGCTCGACCTCGTGAAGATCCGCTTCGCC|GGATCTTCTAAGGGTGTGAGGATACAGGCGTCAAAGACCCCGTGCTGAGACAGCTCCATAACAACATGCAGATATTTGGCAATGAGGGTTCAGAAGAGGACTTGCTGTGGAGAAGAGAGAAAAGAGATGGGAAGACTCTGTGAATGAATAG 37 1.0 0.926153678206187 0.470414476546405 N Y 3.48696720636436 3.660633458326 3.48696720636436 1 0.99317366921026 0.0 Y 0.0 N Y 1338 294 ENSG00000164933 ENSG00000247081 + - 8 8 104427417 104311000 coding intron SLC25A32 RP11-318M2.2 104410863 104169218 - - 0.0 104427012 104258912 - + N - 5.43947791967342 N SA540 1 0.0 1.0 1 0 1 N N 0.0 0.0 20 1.65804770465093 1.65804770465093 1.65804770465093 1.65804770465093 4 - 0.3 0.985766940869198 HCT116-stranded 5.0 226592 CTCCCGGACGTAGGTAGTTTGTTGGGCCGGGTTCTGAGGCCTTGCTTCTCTTTACTTTTCCACTCTAGGCCACGATGCCGCAGTACCAGACCTGGGAGGAGTTCAGCCGCGCTGCCGAGAAGCTTTACCTCGCTGACCCTATGAAG|ATTCAACTGACGAAGTTACGGGATCAAACTGCTGTAGGAGCTGCCAAACGCTTCTCTCCATTTCTGGCCGCGGGGCCGCGGACCGCCCTTTAAGTAGCCCGTTTTATCCCTGGCAGAGGTGGAGCCTTAGGCAGGCCTAGAGACTTTCCCGGGTCCT 6 1.0 0.9658766843818628 0.3755155886674079 N Y 3.40591861909494 3.7061623612628 3.40591861909494 1 0.99317321557318 0.0 Y 0.754235760634463 N N 16851 4105 ENSG00000143742 ENSG00000143819 + - 1 1 225978168 226033260 coding upstream SRP9 EPHX1 225965531 225997794 + + 0.0 225965714 225997579 + - N 0.485541905930568 - N SA540 2 0.38926174496644295 2.0 2 5 1 N N 0.0 0.38926174496644295 5 1.5133858243793703 1.3353404332759198 1.5133858243793703 1.3353404332759198 4 207.6 - 0.933151369917085 HCT116-stranded CGHSA0324 5.0 590449 GGCTACTGAGAAGAGAGCCAAAGAGCGGCAGGAGCTGGAGAAGAGAATGGCTGAGGTAGAAGCCCAGAAAGCCCAGCAGTTGGAGGAGGCCAGACTACAGGAGGAAGAGCAGAAAAAAGAGGAGCTGGCCAGGCTACGGAGAGAACT|GCTAGAAAGACTTGAGTTAGACAAGCAGCAGCACACGCCTCCCTACCTCATGGCGACAGAAAATGGAGCAGTTGAGCTGGGAATTCAGAACCCATCAACAGACAAGGCACCTAAAGGTCCCACAGGTGAAAGACCCCTGGCTGCAGGGAAAGACCCTGG 26 1.0 0.6620490138029761 0.0454693078944359 N Y 3.1614158869593 3.3646059336237206 3.1614158869593 0 0.0 0.0 Y 0.0 N Y 15488 1010 ENSG00000088325 ENSG00000101306 + - 20 20 30389608 30422492 coding utr5p TPX2 MYLK2 30327074 30407111 + + 0.0 30386355 30407336 + - N - - N SA540 1 0.0 1.0 1 0 1 Y N 0.0 0.0 12 1.48000231354747 1.55789717215524 1.55789717215524 1.48000231354747 4 - - 0.9613381404991008 HCT116-stranded 5.0 408344 CCAGTATCTCCGTGATTACCTTCATCTGCCCCCGGAGATTGTGCCTGCCACCCTACGCCGTAGCCGTCCAGAGACTGGCAGGCCTCGGCCTAAAGGTCTGGAGGGTGAGCGACCTGCGAGACTCACAAGAGGGGAAGCTGACAGAGATACCTACAGACGGAGTGCTGTGCCAC|GTGCTACTCGTGAGCAGTAGTCGCCATCCAGACAGATGGATTGTCCCTGGAGGAGGCATGGAGCCCGAGGAGGAGCCAAGTGTGGCAGCAGTTCGTGAAGTCTGTGAGGAGGTATGCATGGAGAAGAGAGGGCACAGCTGTGCCTCG 34 1.0 0.568580198775197 0.386184100642499 Y Y 3.5676145660496603 3.6988816296077 3.5676145660496603 1 0.9932184711890992 0.0 Y 0.74230190518575 N Y 48680 3300 ENSG00000124614 ENSG00000112664 + - 6 6 34393902 34360451 coding coding RPS10 NUDT3 34385231 34255997 - - 0.0 34389507 34309749 - + N - 4.48591852897998 N SA540 14 0.0 8.2 5 10 2 N Y 0.0 0.0 10 1.9139879543621496 1.635792030763 1.9139879543621496 1.635792030763 4 - 15.9 0.9292410934312488 HCT116-stranded CGHSA0652 5.0 654192 CTAATAGAACAAGGAAAGCTCTCCAACCATGTCTGGCGTTGAGAAGCCAAGAGTCTCTGTCAACTCTCTCATTGCCCAGTGGTGACATGTGCTCTTCTCCACACTGTTGGGAGGTAATGCTGCCCCACGTGCTGGTGCAG|GCATAATCACCAGCAACACCCGGGACAATAATACGGGGGCCACCTACCCCCACCTGAACTTCAGCATTCCCATCACGGTGCTCCAGCCGGCCCTGCAGCAGTACAGCCAGACCCAAGACCTAGGTGGCCTCCGTGAGCTGGACCGCGCTGCTGAGCCAGTCAGGGTGGTGTGGCGGTTGCAGCGGCCCCTGGC 11 1.0 0.465686755476885 0.131123723631082 Y Y 3.50997045217554 3.16935896602371 3.16935896602371 0 0.992878528656972 0.0 Y 0.0 N N 6148 705 ENSG00000079332 ENSG00000156521 + - 10 10 71930279 71906432 utr3p coding SAR1A TYSND1 71909960 71897737 - - 0.0 71912019 71899897 - + N - - N SA540 1 0.0 1.0 1 0 1 N Y 0.0 0.0 9 1.40210745493971 1.75819823714662 1.75819823714662 1.40210745493971 4 - - 0.968300720080863 HCT116-stranded 5.0 607852 GGTGAGAAAGGACCTCCAAGAGGTGGTGGCAGGGGAGGCCGAGGAGGAGGAAGAGGAGGAGGTGGCAGAGGTGGTGGCAGAGGCGGTGGTTTTAGAGGTGGAAGAGGAGGTGGAGGTGGGGGCTTCAGAGGAGGAAGAGGTGGTGGTTTCAG|AGGTATGATAAGTATTATCAGCAACATAATAGTTCTGGGCATCTTCATTAAGTACAAGGAACTTCGGACACCCACAAATGCAATTATTATTAACCTGGCTGTTACTGATATAGGGGTCAGTAGCATTGGCTATCCCATGTCTGCTGCCTCAGATCTGT 8 0.929137257803364 0.6332043873160811 0.204115920522587 Y Y 2.98098634482147 3.52720696927234 2.98098634482147 0 0.0 0.0 Y 0.0 N Y 2287 85 ENSG00000109534 ENSG00000180245 + - 4 4 110745893 110765760 coding intron GAR1 RRH 110736666 110749150 + + 0.0 110745189 110754295 + - N - 0.0935589364424854 N SA540 2 0.438709677419355 1.125 1 1 2 Y Y 0.438709677419355 0.0 8 1.72481472631473 1.48000231354747 1.72481472631473 1.48000231354747 4 - 0 0.961742622960463 HCT116-stranded 5.0 607639 GGTGGCAGGGGAGGCCGAGGAGGAGGAAGAGGAGGAGGTGGCAGAGGTGGTGGCAGAGGCGGTGGTTTTAGAGGTGGAAGAGGAGGTGGAGGTGGGGGCTTCAGAGGAGGAAGAGGTGGTGGTTTCAGAGG|TTTATGCTGGATTGAATATTTTTTTTGGAATGGCAAGCATTGGATTACTCACGGTCGTGGCTGTGGACCGATACCTGACCATCTGCCTTCCTGACGTAGGGAGAAGAATGACCACCAACACTTACATCGGCTTGATTCTGGGAGCCTGGATCAATGGCCTGTTTTGGGCTTTGATGCCTAT 13 1.0 0.6685381228849251 0.472535633840414 Y Y 2.98098634482147 3.06000864534446 2.98098634482147 0 0.0 0.0 Y 0.0 N Y 2287 85 ENSG00000109534 ENSG00000180245 + - 4 4 110745893 110765760 coding coding GAR1 RRH 110736666 110749150 + + 0.0 110745189 110756522 + - N - - N SA540 1 0.37272727272727296 1.0 1 0 2 N Y 0.37272727272727296 0.0 5 1.22406206383626 1.74707040020266 1.74707040020266 1.22406206383626 4 - - 0.982880247283979 HCT116-stranded 5.0 607477 GAATGACCACCAACACTTACATCGGCTTGATTCTGGGAGCCTGGATCAATGGCCTGTTTTGGGCTTTGATGCCTATCATAGGGTGGGCTAGTTATGCCCCAGATCCTACTGGTGCTACGTGTACCATAAACTGGAGGAAAAATGATAG|GTTGGTGCTATGTAATGACATGGATATGAACGAGCTGCCTACGAACCTCCCCGTGGACACTGTGAAGCTTCGCATAGAGAAGACTGTCATCCGCAGAATCTCTGCGGAGGCCTTCTATTACCTGGTGGAGCTCCAGTATCTCTGGGT 44 1.0 0.694905322538072 0.506032614327378 Y Y 3.47129812537077 3.6371797845675298 3.47129812537077 0 0.0 0.0 Y 0.0 N N 85 2403 ENSG00000180245 ENSG00000183423 + - 4 4 110765760 110793471 coding utr5p RRH LRIT3 110749150 110772486 + + 0.0 110757316 110772660 + - N - - N SA540 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 16 1.68030337853886 1.55789717215524 1.68030337853886 1.55789717215524 4 - - 0.985766940869198 HCT116-stranded 5.0 229738 GAAGTCTTTGTCTTTGGTGATGAGAATGGGACAGTCTCCCTTGTGGACACCAAGAGTACAAGCTGTGTCCTGAGCTCAGCTGTACACTCCCAGTGTGTCACTGGGCTGGTGTTCTCCCCACACAGG|GCTGGTTCTTGTGCTGAAACACCACGATGGTGCTGCCCATAAACTCGTGTGTTATTTCACCAACTGGGCACACAGTCGGCCAGGCCCTGCCTCGATCTTGCCCCATGACCTGGACCCCTTTCTCTGCACCCACCTGATATTTGCCTTTGCCTCAATGAACAACAATCAGATTGTTGCTA 8 1.0 0.34563758785702897 0.31475451971061497 N Y 3.15848451151898 3.47804449069255 3.15848451151898 0 0.992089428363938 0.00326797385620925 Y 0.00326797385620925 N Y 4093 1452 ENSG00000116455 ENSG00000085465 + - 1 1 111991998 111970399 coding coding WDR77 OVGP1 111982512 111956936 - - 0.0 111985275 111969713 - + N - - N SA540 1 0.0 1.0 1 0 2 Y N 0.0 0.0 5 1.1461672052285 1.94737146519405 1.94737146519405 1.1461672052285 4 - - 0.9487134859841708 HCT116-stranded CGHSA0371 5.0 230490 GCCTGAGTGGGCGCTGCTGGGCCGGCTCCCTCTGGCTTTTTAAGGACCCCTGTGCCGCCCCCAACGAAGGCTTCTGCTCCGCCGGAGTCCAAACGGAGGCTGGAGTGGCTGACCTCACTTGGGTTGGGGAGAGAGGTATTCTAGTGGCCTCCGATTCAGGTGCTG|CCCATAAACTCGTGTGTTATTTCACCAACTGGGCACACAGTCGGCCAGGCCCTGCCTCGATCTTGCCCCATGACCTGGACCCCTTTCTCTGCACCCACCTGATATTTGCCTTTGCCTCAATGAACAAC 42 1.0 0.7166846096829599 0.39408508776130496 N Y 3.6052936758779 3.4451253122330296 3.4451253122330296 0 0.992214073129252 0.0 Y 0.0 N Y 4093 1452 ENSG00000116455 ENSG00000085465 + - 1 1 111991998 111970399 coding coding WDR77 OVGP1 111982512 111956936 - - 0.0 111991241 111969263 - + N - - N SA540 2 0.0 1.03125 1 1 2 Y N 0.0 0.0 32 1.7804539110345603 1.59128068298713 1.7804539110345603 1.59128068298713 4 - - 0.987984121538443 HCT116-stranded CGHSA0371 5.0 103986 TGTCATTTGAGTGCAAGTATCTGGATGGCATTCACTCTGAAGTTTGACAGCAAGTCCATTTAGCTCAAGGCAGAACTGCCTTAAATGTTCATACTTCCACACACCTTCATCTTGGCCTTCAGGTGGTTCAAGAATTTTGTCAATATTGGAGCAATCTGCTCTTATGTTCTGTTGAATATA|CATTACTCCCTCCGCCTCAGACTCGTACTCTGCTCTAGTGTAGCGCCGCAAAGAGACTCGCAGTCCGGCCCTGGCGACACGTGAAAAAATCACCCAGCGCGCAGGCGCGCTCGCCCCAGCGGTCGCCGCTAGCCCCCTCGC 58 1.0 0.785231500697241 0.3991501795546721 Y Y 3.52567938596249 3.46335504630636 3.46335504630636 1 0.992929826879873 0.0 Y 0.0 N Y 5117 24049 ENSG00000115540 ENSG00000115541 - + 2 2 198418423 198368181 coding coding MOB4 HSPE1 198380295 198364718 + + 0.0 198400254 198365163 - + N - 0.388454708680792 N SA540 3 0.0 2.05555555555556 1 11 3 N Y 0.0 0.0 18 1.98075497602594 1.39097961799575 1.98075497602594 1.39097961799575 4 - 466.888888888889 0.946735677755132 HCT116-stranded 5.0 102729 GCGCGCCTGCGCGCTGGGTGATTTTTTCACGTGTCGCCAGGGCCGGACTGCGAGTCTCTTTGCGGCGCTACACTAGAGCAGAGTACGAGTCTGAGGCGGAGGGAGTAAT|GTGTCCTGCTATAGACTATACTAGACACACACTTGATGGTGCTGCATGTCTTCTGAATAGCAATAAATATTTTCCCAGCAGGGTTAGCATAAAGGAATCATCTGTAGCGAAACTAGGATCAGTATGCCGTAGGATTT 18 0.330364322842023 0.640305805045468 0.6479395531165251 Y Y 3.4439989565073 3.5482584762506004 3.4439989565073 3 0.99086283103666 0.0 Y 0.0 N Y 24049 5117 ENSG00000115541 ENSG00000115540 + - 2 2 198368181 198418423 coding coding HSPE1 MOB4 198364718 198380295 + + 0.0 198365163 198413060 + - N - - N SA540 2 0.0 1.88888888888889 1 8 3 N Y 0.0 0.0 9 0.945866140237108 1.40210745493971 1.40210745493971 0.945866140237108 4 - - 0.944726543238394 HCT116-stranded 5.0 718788 GAGTCTTTTAGTCCTGCTATACAGCTGCACCTTGTACATCAAGCTCCATGTAATGTTCCTCCTTACCTCTCAAAGAATGAATCAAACCTTGGGGACCTCTTACTGGGCTTTCTTAAATATTATGCTACAGAATTTGA|ACAGATGTAAGCCAGTCAGTAGCTGGGCTTCATCTTGCATATTCCTAGGAGGAAATATGTTTATGAAGTGATGGCAAACGCGGCTGCTGCATTGGTCAGGAATGATAACCGCAGAGGAATTTAAACCCAGCCTTAAGGAGTAGGTA 11 0.8186944078767251 0.7564454866196479 0.538678848891874 Y Y 3.2668017624283303 3.63721963736088 3.2668017624283303 1 0.0 0.0 Y 0.0 N N 737 4958 ENSG00000164329 ENSG00000164309 + - 5 5 78982471 79096063 coding intron PAPD4 CMYA5 78907943 78985700 + + 0.0 78964851 79023365 + - N 0.425135689091004 0.0186812091543146 N SA540 1 0.0 1.0 1 0 1 N Y 0.0 0.0 10 1.4243631288276395 1.6024085199311 1.6024085199311 1.4243631288276395 4 1.6 0.1 0.982818614860321 HCT116-stranded 5.0 595893 ATTTGTATGCTGCATGGTGTTTCACAAGAGGACTTTCTACGGAGGAACCAAGATAAAAATGTGAGAGATGTAATATATGACATTGCCAGTCAAGCACACTTGCACCTAAAGCATGCTA|TTAGTGAAAGATGGTGGATCGCTTGGCAAACAGTGAAGCAAATACTAGACGTATAAGTATAGTGGAAAACTGTTTTGGAGCAGCTGGTCAACCTTTAACTATACCTGGACGAGTTCTTATTGGAGAAGGAGTATTGAC 13 0.464877231624664 0.674063302870146 0.376815822461636 Y Y 3.5210127405496205 3.59425138750382 3.5210127405496205 0 0.0 0.0 Y 0.0 N Y 561 2420 ENSG00000156170 ENSG00000175895 + - 8 8 96128683 96168912 coding utr5p NDUFAF6 PLEKHF2 95907995 96146032 + + 0.0 96060786 96166259 + - N - - N SA540 1 0.0072992700729927 1.0 1 0 1 N Y 0.0 0.0072992700729927 9 1.6246641938190298 1.52451366132334 1.6246641938190298 1.52451366132334 4 - - 0.914607488384486 HCT116-stranded 5.0 719510 ATTCCAGAAGGATACTCTCCCTTCTCATTTGTGAATGTAAGGCCCAGCTGGATAATTTTTAAAAGGTCAACATTGCACCGCAGAAGCTGATATTGGTAATCTATGGAACTACGAAATTCACCAATTGGTCGCACCACAACACCTGGAAATTCTGTGTC|ATCTACTCGGAAGTCTTCAAGACGTCGGAATTTGCCGAGGTATTCTTGCAGTTTGGGGTCAATGTCCAAATTTTTGGCTTTGGAATATTTCAAGAAGGCCCAGAACTTCTCCAGCCCATACAGTTGGCCTGT 11 0.941824713885802 0.609281788832734 0.757214929065217 Y Y 3.5565722776755897 3.74913061111987 3.5565722776755897 0 0.0 0.0 Y 0.0 N Y 1833 15359 ENSG00000155508 ENSG00000155506 - + 5 5 154256353 154197167 coding coding CNOT8 LARP1 154237113 154092462 + + 0.0 154244752 154191200 - + N - 0.74740295029023 N SA540 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 6 1.7804539110345603 1.17955071606039 1.7804539110345603 1.17955071606039 4 - 55 0.987878464646363 HCT116-stranded 5.0 419889 GAAGTCAAAGCAATGCGCACGCGCAGTGGCTTTGAAGGCGGGGCAACAAAGCCTGTGGCCGATGTGGCGCTCCTCGGCCCGCGCTTCAGTGGTTATGACAGTGTTCGCTCTAAGGGGAGAAGGAATGTGTGACCATTTCCAACGGT|CAGTCACCACGAACAGGGGCACTCGGCATGCTGCCCCAGCACTGGAGAAGCAGCGCTGTGGGGGCAATCTGTCACACTCTCAGAGTCTGGGACTTGACTTGCTACCAACAACTGCTGTGCAATTCTGCTGAGCAGGAATATCATGAG 1 0.7065246695274889 0.7950558058296641 0.864645123925157 Y Y 3.7255184510618697 3.4367716580146896 3.4367716580146896 0 0.9931739819215358 0.0 Y 0.0 N Y 562 208 ENSG00000230844 ENSG00000147119 + - X X 46407671 46457843 intron utr3p ZNF674-AS1 CHST7 46404928 46433219 + + 0.0 46405062 46457195 + - N 0.633601010195009 0.62242754152936 N SA540 1 0.0 1.0 1 0 1 N Y 0.0 0.0 8 0.890226955517278 0.990377488012972 0.990377488012972 0.890226955517278 4 6.875 1.625 0.966681387979242 HCT116-stranded 5.0 133238 TGTTGAACTTCCCACCTTATACCAGAAATCAGATAGTCACTATTTTGCAAGATCGACTTAATCAGGTATCTAGAGATCAGGTTCTGGACAATGCTGCAGTTCAATTCTGTGCCCGCAAAGTCTCTGCTGTTTCAGGAGATGTTCGCAAAGCACTGGATGTTTGCAG|CATCACAGGACATGGCCCCCTCAGCCACCTAGCTGGGGCCCATCTAGGAGTGGCATCTTTTTTGGTGCCCTGAAGGCCAGCTCTGGACCTTCCCAGGAAAAGTGCCAGCTCACAGAACTGCTTGACCAAAGGACCGGCTCTTGAGACATCCCCCAACCCACCTG 80 1.0 0.986529083102764 0.547441213994824 Y Y 3.4780843434859 3.25360004855864 3.25360004855864 4 0.0 0.0 Y 0.0 N Y 2402 3105 ENSG00000094804 ENSG00000131759 + - 17 17 38459171 38513094 coding utr5p CDC6 RARA 38443885 38465444 + + 0.0 38451708 38487109 + - N - - N SA540 1 0.0 1.0 1 0 2 N Y 0.0 0.0 38 1.8806044435302496 1.89173228047422 1.89173228047422 1.8806044435302496 4 - - 0.9855008867293 HCT116-stranded 5.0 590424 TAGAAGAAACAGAAGGATTTGGACAAGAGTAACTTCTGAGAACTTGCACCATGAATGGGCAAGAACTTATTTGCAATGTTTGTCCTTCTCTGCCTGTTGCACATCTTGTAAAATTGGACAATGGCTCTTTAGAGAGTTATCTGAGT|ACACTCCTGGAAGGAGAACCAAATCCTTCCTCACTGAAGAGCAGCTACTGTGGAATGAAACTTTGGAGTTAGATCATCGTTGAATCCAGCAAGCTACAGTGCCTGGGAGAAACAGCATTTATAAAGTATCGAGGTTACC 6 0.890884561521001 0.1847961977936 0.178006740257008 Y Y 3.56488607910057 3.38759559906577 3.38759559906577 0 0.0 0.0 Y 0.0 N N 628 4208 ENSG00000078747 ENSG00000125971 + - 20 20 33099198 33128762 utr3p upstream ITCH DYNLRB1 32951041 33104214 + + 0.0 33095713 33102984 + - N - - N SA540 1 0.0 1.0 1 0 1 N Y 0.0 0.0 6 0.901354792461244 1.26857341161212 1.26857341161212 0.901354792461244 4 - - 0.931098456757203 HCT116-stranded 5.0 1386 TGACAAGCTTTTTGTAATTGATGCTTTGTATTCAGATAATATAAGCAAGGAAAACTGTGTTTTCAGAAGCTCACTGATTGGCATAGTTTGTGGTGTTTTCTATCCCAGTTCTTTGGCTTTTACTAAAAATGGACGCCTGGCAACCAA|GAATCTACTTGAAAATGGATCGGTTTATGTTGGATTAAATGCTGCTCTTTGTGGCCTCATAGCAAACAGTCTTTTTCGACGCATCTTGAATGTGACAAAGGCTCGCATAGCTGCTGGCTTACCAATGGCAGGG 7 1.0 0.6175403694576971 0.4847047989511079 Y Y 3.48639814491089 3.2629469197535097 3.2629469197535097 1 0.0 0.0 Y 0.0 N Y 1719 741 ENSG00000171204 ENSG00000171202 + - 11 11 85347580 85367591 coding coding TMEM126B TMEM126A 85339629 85359011 + + 0.0 85346822 85365107 + - N - - N SA540 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 7 1.6024085199311 1.20180638994833 1.6024085199311 1.20180638994833 4 - - 0.991337350844216 HCT116-stranded 5.0 1385 GGCAAGTCACATGAGCCACCAAAATGGTGGTGTTCGGGTATGAGGCTGGGACTAAGCCAAGGGATTCAGGTGTGGTGCCGGTGGGAACTGAGGAAGCGCCCAAGG|AATCTACTTGAAAATGGATCGGTTTATGTTGGATTAAATGCTGCTCTTTGTGGCCTCATAGCAAACAGTCTTTTTCGACGCATCTTGAATGTGACAAAGGCTCGCATAGCTGCTGGCTTACCAATGGCAGGGATACCTTTTCTTAC 8 1.0 0.3941134801053379 0.391400094465437 Y Y 3.38912318237562 3.25360004855864 3.25360004855864 1 0.0 0.0 Y 0.00396825396825407 N Y 1719 741 ENSG00000171204 ENSG00000171202 + - 11 11 85347580 85367591 coding coding TMEM126B TMEM126A 85339629 85359011 + + 0.0 85339732 85365107 + - N - - N SA540 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 5 0.990377488012972 1.23518990078022 1.23518990078022 0.990377488012972 4 - - 0.988069768686816 HCT116-stranded 5.0 72535 AATGCCCGATCAAGGAGGTGGTGCTTTATGTCAAAGAAGAAATGAAGAGGAATGATCTTCCAGAAACAGCAGTGATTGGTCTTCTGTGGACATGTATAATGAACGCTGTTGAGTGGAACAAGAAGGAAGAACTTGTTGCAGAGCAGGCTCTGAAGCACCTGA|AGTTGGTTAGTCTGCTGCTAATTGGAATTGCTGCGTGGGGCATTGGCTTCGGGCTGATTTCCAGTCTCCGAGTGGTCGGCGTGGTCATTGCAGTGGGCATCTTCTTGTTCCTGATTGCTTTAGTGGGTCTGATTGGAGCTGTAAAACATCAT 90 1.0 0.9429839476201972 0.745561843263565 Y Y 3.4937534244795 3.4152256374964702 3.4152256374964702 0 0.0 0.0 Y 0.0 N Y 8319 2354 ENSG00000136261 ENSG00000106537 + - 7 7 16746148 16824161 coding intron BZW2 TSPAN13 16685756 16793160 + + 0.0 16736686 16815836 + - N - 0.088903836279749 N SA540 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 25 1.84722093269835 1.73594256325869 1.84722093269835 1.73594256325869 4 - 3.4 0.987878464646363 HCT116-stranded 5.0 718834 GAAGGATCGCAGGCGAGATTACGAGGCGAGGCTCGCGCGCCCGCCCCCGCCCTGGCCCCCAGTGCCCACCCGGTCGGCCCGGCACAGCCATGATCAAGGCGATCCTAATCTTCAACAACCACGGGAAGCCGCGGCTCTCCAAGTTCTACCAGCCCTAC|TGCCTCCTGATGCTTGCAATCTCATTCCCAATTCACCAGCGTGCGTGAATGCAGACTCCAGATCCAGCGCAGACGCCAAGAATTCGCTCAGGGGCACCAGCTAAATAGCAAACAGATGCCATGTCAAACATGTGAAAGCCTCAGCGACTAGGGTACCGCCGGGAAAA 23 0.788672923236452 0.709577526390376 0.487121301812287 Y Y 3.5429693362217702 3.35566963758278 3.35566963758278 1 0.0 0.0 Y 0.0 N N 11402 432 ENSG00000177879 ENSG00000172901 + - 5 5 115249778 115394680 coding upstream AP3S1 LVRN 115177178 115298151 + + 0.0 115177803 115297135 + - N - - N SA540 2 0.0 1.6470588235294097 1 11 1 N Y 0.0 0.0 17 1.72481472631473 1.79158174797852 1.79158174797852 1.72481472631473 4 - - 0.9506202232589008 HCT116-stranded 5.0 596235 CACATCGGCAAGCCCTCCACCATCCGCAGAGATGCCCCTGCTGGCCGCAAAGTGGGTCTCATTGCTGCCCGCCGGACTGGACGTCTCCGGGGAACCAAGACTGTGCAGGAGAAAGAGAACTAGTGCTGAGGGCCTCAATAAA|CTCTTGGGACCAGAACTGAGTACAAGGAGTTGACTTCACAGGAGACATTTGGTGAGGAAGATCCCCAGGGATCTGAGCCAGTAGAAGCCTGTGACCACATCAGTAAGTCAGAGGGGAGCCTGGAAAAGCTAGTGGAGCAGAGAGGCCCCA 17 0.9811365184812072 0.34811475954563104 0.555370414741553 Y Y 3.40744620240479 3.49015970162987 3.40744620240479 1 0.0 0.0 Y 0.0034129692832765 N Y 78031 5967 ENSG00000161016 ENSG00000196378 + - 8 8 146017972 146012730 utr3p coding RPL8 ZNF34 146015150 145997611 - - 0.0 146015170 145999990 - + N - - N SA540 4 0.0 2.8333333333333304 1 10 2 Y Y 0.0 0.0 12 1.59128068298713 1.3353404332759198 1.59128068298713 1.3353404332759198 4 - - 0.933725646678124 HCT116-stranded 5.0 595863 CTTTTGGAGGTGGCAACCACCAGCACATCGGCAAGCCCTCCACCATCCGCAGAGATGCCCCTGCTGGCCGCAAAGTGGGTCTCATTGCTGCCCGCCGGACTGGACGTCTCCGGGGAACCAAGACTGTGCAGGAGAAAGAGAACTAGTGCTGAGGGCCTCAATAAA|GCCAAATAGTTGCATCACATGTATCTAATCCGAGAGTCTCATGCTTCTGGTAGCTCCTCAGTGACCAGCTCCTGCTCACTGCCCTCAGAAAGCCCAACCCTCAGGCAATGGCGGCCTTGTTCCTGTCTGCCCCACCCCAGGCCGAGGTGACCTTCGAGGACGTGGCTGTGTACCTCTCC 93 0.928842370314894 0.8018494006552629 0.65481577920914 Y Y 3.40744620240479 3.6759318169590096 3.40744620240479 1 0.0 0.0 Y 0.0 N Y 78031 5967 ENSG00000161016 ENSG00000196378 + - 8 8 146017972 146012730 utr3p utr5p RPL8 ZNF34 146015150 145997611 - - 0.0 146015170 146005665 - + N - - N SA540 4 0.0 2.3333333333333304 1 27 2 Y Y 0.0 0.0 36 1.92511579130611 2.01413848685784 2.01413848685784 1.92511579130611 4 - - 0.960336481622455 HCT116-stranded 5.0 697547 CCACCAGCCCTCAGGAGGCGCCCGGGGCCAAGCCACAGACATTGCCATCCAGGCAGAGGAGATCATGAAGCTCAAGAAGCAGCTCTATAACATCTACGCCAAGCACACCAAACAGAGCCTGCAGGTGAT|CGGCCATCCACGGCTTCCGAGAGACAGAGAAGTCGCGCTGGTCAGAAGCCAGCCGGGCCATCCTGCAGCGCGTGCAGGCGGCCGCCTTTGGCCCCGGCCAGACCCTGCTCTCCTCCGTGCACGTGCTGGACCTGGAAGCCCGCGGCTACA 6 0.994060235597869 0.931820310026833 0.5 Y Y 3.5597249201477403 3.66761801553402 3.5597249201477403 0 0.0 0.0 Y 0.0 N Y 3711 609 ENSG00000125656 ENSG00000125652 + - 19 19 6368915 6375261 coding coding CLPP ALKBH7 6361463 6372444 + + 0.0 6366374 6374214 + - N - - N SA540 1 0.0 1.0 1 0 1 N Y 0.0 0.0 8 1.24631773772419 1.37985178105178 1.37985178105178 1.24631773772419 4 - - 0.985766940869198 HCT116-stranded 5.0 409684 GGCCAGAATGCATTGGTAGAGCTACAGACACAAAGACCAATAGCTCTTGAGCTATATAAAGACTTTAAAGAGCTGGGGAGGTTCATGCTACGTTACGGTGGTTCTACAATAGCTGCTGGTGTTGTCACTGAGAT|CGAAGCCGCGGTCAAGGCCGCCAGAGAAGCCTTTCCCAGCTGGTCATCCCGCAGCCCCCAGGAGCGCTCACGGGTCCTGAACCAGGTGGCGGATTTGCTGGAGCAGTCCCTGGAGGAGTTTGCCCAGGCCGAGTCTAAAGACCAAGGGAAAACCTTAGCACTGGC 7 0.9063132228731792 0.467297936297836 0.50510029636526 Y Y 3.7308075910906897 3.24784690021339 3.24784690021339 0 0.992562189054726 0.0 Y 0.13721393034825902 N Y 4344 532 ENSG00000112339 ENSG00000118514 + - 6 6 135424194 135271260 coding coding HBS1L ALDH8A1 135281516 135238528 - - 0.0 135287467 135265104 - + N - - N SA540 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 8 1.35759610716385 1.84722093269835 1.84722093269835 1.35759610716385 4 - - 0.98586816565488 HCT116-stranded 5.0 431225 ATCCGCCTGGGCGTCACGCTTCGTGGGGCGGGACGAGGAGAAGCCAAACGTAAAGACACCAGGAGTTTCTCGGGCCCAGCTGTGGCTGCTGCCGGGGAGCCCCAAGCCTTGGCGGGTCCTTGCGGCGAATAGGAGTCTGGTCAGGCGTCAGGCTAGTCCGACGAAGAGTG|GGCAAAACCAAAAGACCCATTTCTAAAGAAGTACTGCAACCCTAAGAAGATTCAGGGCCTGGAACTCCAGCAAATAAAAACATATGGACGGCAAATATTAGAGGTACTGAAGTTTCTTCAT 25 0.300578379231995 0.574745381123817 0.6289692671865049 Y Y 3.54140190011857 3.31531547396794 3.31531547396794 1 0.0 0.0 Y 0.0 N Y 326 1735 ENSG00000163684 ENSG00000168297 + - 3 3 58305816 58411748 utr5p coding RPP14 PXK 58291974 58318607 + + 0.0 58292144 58381385 + - N - - N SA540 1 0.0 1.0 1 0 1 N Y 0.0 0.0 10 1.17955071606039 1.03488883578884 1.17955071606039 1.03488883578884 4 - - 0.936621695189146 HCT116-stranded 5.0 135026 TTTATACCTTTTAACACCATTTCGTATCTGCTTAGTGTCAAAAACAGGATGAAAACACACTCCAATCTGAGCAAGGCCATAAGGTAGCCTCTTGTTTACCAGATCCAGGCAATTAACATAGTGTTCCAAGGCA|CCTGAACCTCTGTCTTCGACCAACTGAAGCAACTTGGGATTAATTGCTTGATTAGCTTCACGAAGCACAGAGATAAGGTCGCTCACTTGCTTTATGTTATTAGGTGTAAAGAAAGTGTATGCTGTGCCTGTTTTGGTACTGCGAGC 5 1.0 0.902225217254643 0.14070489078179702 Y Y 3.61041498203738 3.5852752386695297 3.5852752386695297 0 0.0 0.0 Y 0.0 N Y 1520 30561 ENSG00000256525 ENSG00000108654 - + 17 17 62493154 62504317 coding intron POLG2 DDX5 62473902 62495734 - - 0.0 62489138 62496667 + - N 0.63973712948179 4.95620047414833 N SA540 1 0.0 1.0 1 0 1 N Y 0.0 0.0 6 1.3464682702198798 1.1127836943966 1.3464682702198798 1.1127836943966 4 12.8333333333333 377.666666666667 0.9717951683662768 HCT116-stranded 5.0 2094 TTCCCGAAATGTCACTACTAAGAATTATTCAGAGGTGATTGAGGTAGATGAATCAGATGTGGAAGAAGACATTTTTCCTACCACTTCAAAGACAGATCAAAGGTGGTCCAGCACATCATCCAGCAAAATCATGTCCCAGAGTCAAGTATCGAAAGGGGTTGATTTTGAATCAAGTGAGG|TCATCATGCACCCCTTGAAACCCCGGATCTCAATCACAAAGGGTGTCATCTACATCGCTGTCATCTGGACCATGGCTACGTTCTTTTCACTCCCACATGCTATCTGCCAGAAATTATTTACCTTCAAATACAGTGAGGACATTGTGCGCTCCCTCT 7 0.116822389296747 0.80528779127629 0.8246118994677191 N Y 3.30488209984069 3.23999710710482 3.23999710710482 2 0.0 0.0 Y 0.034932081807082 N Y 505 795 ENSG00000020922 ENSG00000123901 + - 11 11 94227074 94134585 coding coding MRE11A GPR83 94152895 94110477 - - 0.0 94163077 94126784 - + N - - N SA540 2 0.0 1.16666666666667 1 1 1 Y N 0.0 0.0 6 1.50225798743541 1.20180638994833 1.50225798743541 1.20180638994833 4 - - 0.9079109370565672 HCT116-stranded 5.0 230814 GAGGAGAGTTCGCCGCCGTCGCCGCCCGTGAGGATCTGAGAGCCATGTCGGCCAGCAGCCTCTTGGAGCAGAGACCAAAAGGTCAAGGAAACAAAGTACAAAATGGATCTGTACATCAAAAGGATGGATTAAACGATGATGATTTTGAACCTTACTTGAGTCCACAGGCAAGGCCC|GTACACTAAGATGAAGACGGCCACCAACATCTACATCTTCAACCTGGCCTTAGCCGATGCGCTGGCCACCAGCACGCTGCCTTTCCAGAGTGCCAAGTACCTGATGGAGACGTGGCCCTTCGGCGAGCTGCTCTGCAAGGCTGTGCTCTCCATCGACTACTACAATATGT 19 0.5424227781763511 0.6938280558412829 0.6268261968560239 Y Y 3.65488030998075 3.75594733445854 3.65488030998075 0 0.0 0.0 Y 0.00874724529581283 N Y 8178 413 ENSG00000198492 ENSG00000116329 + - 1 1 29096287 29190208 coding coding YTHDF2 OPRD1 29063133 29138654 + + 0.0 29064850 29185466 + - N - 0.0275085211691751 N SA540 1 0.0 1.0 1 0 1 N Y 0.0 0.0 13 1.96962713908198 1.8806044435302496 1.96962713908198 1.8806044435302496 4 - 0.0769230769230769 0.945695659479662 HCT116-stranded 5.0 719937 GAAAAAACTCCTAAAACACCAAAAGGACCTAGTTCTGTAGAAGACATTAAAGCAAAAATGCAAGCAAGTATAGAAAAAGGTGGTTCTCTTCCCAAAGTGGAAGCCAAATTCATCAATTATGTGAAGAATTGCTTCCGGATGACTGACCAAG|AGGTGCTGGTTGCCGAGGAGAACGTGGACTTCCGCATCCACGTGGAGAACCAGACGCGGGCTCGGGACGATGTGAGCCGTAAGCAGCTGCGGCTGTACCAGCTCTACAGCCGGACCAGTGGGAAACACATCCAGGTCCTGGGCC 45 1.0 0.8401146651215491 0.7696542693172801 Y Y 3.7576122464142 3.80400638525155 3.7576122464142 1 0.0 0.0 Y 0.0 N Y 129772 4625 ENSG00000181163 ENSG00000156427 + - 5 5 170838141 170884627 coding coding NPM1 FGF18 170814120 170846660 + + 0.0 170834778 170863097 + - N - - N SA540 23 0.0 12.92 1 24 2 Y Y 0.0 0.0 25 1.75819823714662 1.48000231354747 1.75819823714662 1.48000231354747 4 - - 0.937411981671001 HCT116-stranded 5.0 697722 CCACCGCCAGATCAGTTTGCCCCTCCGGGGGTTCCTCCTCCACCAGCCACTCCCGGGGCAGCACCTCTGGCTTTCCCACCGCCTCCGTCTCAGGCTGCCCCGGACATGAGCAAGCCCCCGACAGCTCAGCCAGACTTCCCCTATGGTCAGTATG|TGGGACCTGAACCGCCAAACCGCACCTACGAGCAAACGGTAGGCGCTCCATAAATACTTGTTGATGTGGGTGCCATCGTGTAGATGACGGAGCACGAACCCGAGGCTCAGACAG 12 1.0 0.3261060869813 0.305610077710597 Y Y 3.5680785743660803 3.3368080613236804 3.3368080613236804 0 0.991260679579991 0.00371747211895901 Y 0.00371747211895901 N N 6013 58923 ENSG00000071626 ENSG00000115268 + - 19 19 1435719 1441066 coding upstream DAZAP1 RPS15 1407584 1438358 + + 0.0 1432689 1438072 + - N 0.556363990904346 - N SA540 1 0.5243902439024389 1.0 1 0 2 N Y 0.0 0.5243902439024389 6 1.4466188027155802 0.91248262940521 1.4466188027155802 0.91248262940521 4 51.3333333333333 - 0.968089681921956 HCT116-stranded 5.0 696428 TGCGCAGATCCGGGCCGCGGCTGTGGGGAGGGCGACGGAGCGGGTGACCTTCCGGAGGCGGGAGCGAGCGAGGAGGCCCGGGAGCGCCGAGCGTCGCCGCCGCCGCCGCCATGAACAACTCGGGCGCCGACGAGATCGG|TGGGACCTGAACCGCCAAACCGCACCTACGAGCAAACGGTAGGCGCTCCATAAATACTTGTTGATGTGGGTGCCATCGTGTAGATGACGGAGCACGAACCCGAGGCTCAGACAGGGGCGGCGACTTGTCCAAAGTCCCACTCCGTGGAGGAAGCGGCTCTGCAGACCTCAGG 8 0.5081540307278231 0.724660558667182 0.409152556982616 Y Y 3.35566963758278 3.3368080613236804 3.3368080613236804 0 0.992828813871979 0.0 Y 0.0 N N 6013 58923 ENSG00000071626 ENSG00000115268 + - 19 19 1435719 1441066 coding upstream DAZAP1 RPS15 1407584 1438358 + + 0.0 1407801 1438072 + - N 1.64290113061838 - N SA540 1 0.562130177514793 1.0 1 0 2 N Y 0.0 0.562130177514793 5 1.37985178105178 1.8806044435302496 1.8806044435302496 1.37985178105178 4 68.8 - 0.9755396709317958 HCT116-stranded 5.0 102497 AATATTGTCCAGTGTTTAGCAGCTATGTTGGATACTGTCGTATTTAAATAAAGCAACGAAAAACGCTATTAATGATGCCTTCAGTGTATATTCCTCTGTTGTTCCTAATGCTCAAAATCAAGGGACCTCTGAAGGTGTACTTGGCTAAAT|ATCAGCGCTTCTGACGAGCCCATTTGCACGGGGACTCGGCCCTCTCTTTTCCTGGCGAGGCTTTTGAACCTGTCGCCAAGCCAGTACCTCAGAGAGAAGGAAATGCAGAGGGACGAGAAGGATGCATGGCGCCTGCCCCCAGTTA 12 0.7900220223701461 0.7028814255578549 0.266603306824887 Y Y 3.5587317031712 3.43937216388778 3.43937216388778 0 0.0 0.0 Y 0.0 N N 16540 911 ENSG00000115233 ENSG00000136535 + - 2 2 162268228 162282381 utr3p upstream PSMD14 TBR1 162164549 162272605 + + 0.0 162268010 162271746 + - N - - N SA540 1 0.0 1.0 1 0 1 N Y 0.0 0.0 8 1.61353635687507 1.49113015049144 1.61353635687507 1.49113015049144 4 - - 0.9548166497574 HCT116-stranded 5.0 231530 CAGAAGGCAATAGAAGAGAACAACAACTTCAGTAAAATGGCAGAAGAGAAACTGACCCACAAAATGGAAGCTAATAAAGAGAACCGAGAGGCACAAATGGCTGCCAAACTGGAACGTTTGCGAGAGA|AGCTCCCTGCCCAGGCCCACAGCCATGGCCATGGCCCAGAAACTCAGCCACCTCCTGCCGAGTCTGCGGCAGGTCATCCAGGAGCCTCAGCTATCTCTGCAGCCAGAGCCTGTCTTCACGGTGGATCGAGCTGAGGTGCCGCCGCTCTTCTGGAAGCCGTACATCTATGCGGGCT 22 1.0 0.97343096187257 0.724275950183346 N Y 3.45872825368684 2.99871737545823 2.99871737545823 0 0.992151971102622 0.0 Y 0.0 N Y 25821 1159 ENSG00000117632 ENSG00000182749 + - 1 1 26233482 26197744 coding intron STMN1 PAQR7 26210672 26187701 - - 0.0 26227982 26190352 - + N - 9.77367654141549 N SA540 1 0.0 1.0 1 0 1 N N 0.0 0.0 13 1.3464682702198798 1.94737146519405 1.94737146519405 1.3464682702198798 4 - 0.384615384615385 0.98007144426254 HCT116-stranded 5.0 230821 CACAACGTCCAGCCGTTCCTTCAAGCACTCCCGCTCTGCTGCCGTCACCTCAGAGTTCCACTTGGTGCCTAGCCGCAGCATGAATGGGCAGCCACTGACTTGTGTGGTGTCCCATCCTGGCCTGCTCCAGGACCAAAGGATCACCCACATCCTCCACGTGTC|CTGAGGCTGTAGGAGTGCAATTGGAACCTGAGCGCTTGGTCAAGATCCTAGAGGTGCTTCGGGAACTCCCTGTCCCAAACTACAGGACCCTGGAGTTCCTCATGAGGCACTTGGTACACATGGCCTCATTCAGTGCCCAGACCAACATGCATGC 23 1.0 0.8639401208592801 0.317350109143955 Y Y 3.45720067037699 3.6375903597214703 3.45720067037699 1 0.0 0.0 Y 0.0 N Y 141 844 ENSG00000143217 ENSG00000186517 + - 1 1 161059389 161039760 coding coding PVRL4 ARHGAP30 161040785 161016736 - - 0.0 161047243 161024495 - + N - - N SA540 1 0.0 1.0 1 0 1 N Y 0.0 0.0 9 1.50225798743541 1.68030337853886 1.68030337853886 1.50225798743541 4 - - 0.969554158156243 HCT116-stranded 5.0 596263 ACCTAAAGGGAGCAAAGAGAAGAGCAAACCAATGTTCTTTTGCCACCGATGGAGCATTGGAAAGGCCATAGACTTTGCCGCTTCTCTAGCCAGGCTTAAAAATGACAATAACAAATTTACAGCTAAG|AAGAAGCAAGGATGTCATCGCTCAGTTTTCTGAATATAGAGAAGACTGAAATACTATTTTTCACAAAGACTGAAGAAACCATCCTTGTAAGTTCAAGCTACGAAAATAAACGGCCTAATTCCAGCCACCTCTTTGTGAAAATAGAAG 5 1.0 0.268872402771055 0.164104683691883 N Y 3.26191384998362 3.60207067538885 3.26191384998362 0 0.9921546170365072 0.0 Y 0.0 N N 3383 241 ENSG00000104231 ENSG00000253598 + - 8 8 82645138 82608409 coding coding ZFAND1 SLC10A5 82613569 82605842 - - 0.0 82615204 82607158 - + N - 1.16557895378121 N SA540 1 0.0 1.0 1 0 2 N N 0.0 0.0 5 0.923610466349176 1.25744557466815 1.25744557466815 0.923610466349176 4 - 4 0.966840945387443 HCT116-stranded 5.0 382019 CTTTCACCACCTTTGGCTCCAAAGGGATACTCCTATCACACACATCAGTTTTCATCCCAAGAGACCGATGCACATCCTTCTCCATGATGCCTACATGTTCTGCATCATTGACAAGTCATT|GTCAAGTTCATCCGAGAAGTAACACCATATATCAAGAAGCCATCATTAGTATCAGATCTGCCGTGGGAAGGTGCAGCCCCCCAGTCACCAAGCTTTAGTGGCAGTGAGGACTCTGGTTCGCCAAAACACCAGAACAGCACCAAGGACAGGAAGATCATCCCTCTCAAAATGTGCTTTGCT 16 1.0 0.4787011029005329 0.590933627483134 Y Y 3.55760534744548 3.51377186168787 3.51377186168787 1 0.991694352159468 0.0 Y 0.0 N Y 9713 4396 ENSG00000141076 ENSG00000168807 + - 16 16 69202941 69342955 coding intron CIRH1A SNTB2 69165194 69221032 + + 0.0 69199429 69279505 + - N 5.82504156674002 0.220966332466101 N SA540 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 5 0.923610466349176 1.64691986770696 1.64691986770696 0.923610466349176 4 226.6 5.6 0.990325642576842 HCT116-stranded 5.0 573085 GACAGCATGCAAGAAGGAAAAAGTTACAAAGGAAATGCAAAGAAGCCCCAGGAGGAAGACAGTCCTGGGCCTTCCACTTCATCTGTCCTGAAACGGAAATCGGACAGAAAGCCTTTGCGGGGAGGAG|AACATGGTCCAAGACAATTCCTGGGAAAGTTCAGTTCTTCTCAAGTGAGGGTTCTGACACATCTGTACCAATTCCAGTAGTGCCACTACGGGGTGTGGACGACTCCTACCCGCCCCAGAAGAAGTCCTTCATGATGCTCAAGTACATGCACGACCACT 28 1.0 0.866684166135905 0.545984674964159 Y Y 3.2583201271339903 3.49847350305486 3.2583201271339903 0 0.0 0.0 Y 0.0 N Y 2692 4643 ENSG00000131871 ENSG00000131873 + - 15 15 101817705 101792137 coding coding VIMP CHSY1 101811022 101715928 - - 0.0 101814625 101775782 - + N - - N SA540 1 0.0 1.0 1 0 1 N Y 0.0 0.0 12 1.50225798743541 1.5356414982673 1.5356414982673 1.50225798743541 4 - - 0.98586816565488 HCT116-stranded 5.0 231471 TTGCTAAGCCAGTCAGTGGCCCTGCCTCCGTGCACTGAACCCAACTTCCAGGGACTGACTCACTGAGAGTGGGCTTTGACAAACAGCTCTCACAGGACCTGGCTGTCAACCTCCTTGTTGCCCCCACTGTTGCCTTGAGAATTGAAGACATG|CCTTCCTGATGCGCTTGCCTGCTCCCTGGTCTCTCTGCATGGGGAAGGAGTGTTCCCAGCTTGCAAACTCCAGCTTTGCCTGTGAGAGGAACAAGCGTCCCTGATCCAGAAGGTGTTCGGATGGAG 7 1.0 0.7376268884422329 0.545793464718786 Y Y 3.32163768376666 3.11761290642523 3.11761290642523 0 0.0 0.0 Y 0.0 N Y 320 1110 ENSG00000164008 ENSG00000164010 + - 1 1 43264127 43310660 utr5p utr5p C1orf50 ERMAP 43232940 43282795 + + 0.0 43241150 43291294 + - N - - N SA540 1 0.0 1.0 1 0 1 N Y 0.0 0.0 5 1.16842287911643 1.0126331619009 1.16842287911643 1.0126331619009 4 - - 0.9813068369417992 HCT116-stranded 5.0 230956 ACTTGTGAGCGGCCATCTTGGTCCTGCCCTGACAGATTCTCCTATCGGGGTCACAGGGACGCTAAGATTGCTACCTGGACTTTCGTTGACCATGCTGTCCCGGGTGGTACTTTCCGCCGCCGCCACAGCGGCCCCCTCTCTGAAGAATGCAGCCTTCCTAGGTCCAG|GCTTTCATCCATCCCAGGGGAATCACTTACCTATGCCAGCACAACTTTCAAACTCTCAGAAGAAAAGAGCAATCACTTGGCTGAGAACCATTCTGCAGACTTTGACCCCATTGTCTATGCTCAAATTAAAGTAACAAACTAACTCAGCTTTTCC 38 0.268508527426816 0.74141168744378 0.7671911055013231 Y Y 3.54719490125717 3.4655144718019804 3.4655144718019804 2 0.0 0.00310559006211186 Y 0.00310559006211186 N Y 17691 616 ENSG00000116459 ENSG00000143110 + - 1 1 112005395 112021134 coding coding ATP5F1 C1orf162 111991486 112016414 + + 0.0 111992495 112020605 + - N - - N SA540 1 0.0 1.0 1 0 1 N Y 0.0 0.0 37 1.46887447660351 1.7693260740905905 1.7693260740905905 1.46887447660351 4 - - 0.9510223746588442 HCT116-stranded 5.0 595284 CATTGTTCCCAAACCTAAGAATATCTGCTGTGCCCAGGTGGTTGTCGGGGGCAGGGGACAGCAGCACAAACTCTGCTTCCTGGCATGATGTCCAGCTCCTCACTCTTCCAACCTTCCCTAAGGGGAGTTCCCTCTTGGAGGCCTTTGGTATCCTTTCCTGTCAGCTGACTCCCAT|CTTCAGAATCCCAGAGTTGAATAGTCACATTTGTTTCTCCTTCTTCATCAGTCACCAGATTTATGGTAAAGTTTGTAGCATCTGATGAGATCTTCTTGGCCACATTCACCATTTGTAGTATTTTAGGATCTTCTATTTTC 30 1.0 0.65976433369041 0.5 Y Y 3.48487056160104 3.39487633072086 3.39487633072086 0 0.9928797468354428 0.0 Y 0.0 N N 4880 241 ENSG00000133731 ENSG00000253598 - + 8 8 82598928 82608409 upstream coding IMPA1 SLC10A5 82570196 82605842 - - 0.0 82602027 82606883 + - N - 0.521364976204307 N SA540 2 0.0 1.8 1 12 2 N Y 0.0 0.0 15 1.99188281296991 1.4243631288276395 1.99188281296991 1.4243631288276395 4 - 0.733333333333333 0.974692221229489 HCT116-stranded 5.0 181122 GCCTCTGCGACTACCCCTCATCCCGGGCCATGTATGCCGTCGACCTCATGCTGAAGTGGGACAACGGCCCAGATGGAAGGCGGGTGATGCAGCCGCAGATCCTGGAGGTGAACTTCAACCCCGACTGTGAGCGAGCCTGCAGG|GCGTTTTGTGGCAGTGCGTGTTTTGTGGCCAGCAGGAGCTATGTGGGACATTTGTTACAGATGAACAACCCCACGAGTTGCGGAGATGGCAGAAGTCTGGGTTGCACTTTCTCCAATCCCTAAGTGTCTGGCACGGACTCAG 3 0.7301764952843259 0.749705070084095 0.6038076471841091 N Y 3.6272104187567 3.11591748924604 3.11591748924604 0 0.0 0.0 Y 0.0 N Y 9978 9978 ENSG00000100304 ENSG00000100304 + - 22 22 43583139 43583139 coding downstream TTLL12 TTLL12 43562628 43562628 - - 0.0 43564780 43564165 - + N - - N SA540 1 0.0 1.0 1 0 1 Y N 0.0 0.0 5 1.37985178105178 1.4354909657716102 1.4354909657716102 1.37985178105178 4 - - 0.966897563097354 HCT116-stranded 5.0 134843 GAGAGCCGACCATTTTCAGTTGACTTTTTCAGGAAAATGATTCAGTTTGAAAAGGAGCAAGAATCCTGCAATATGGCGAACATAAGAGAATATTATGAGAGAGCTTTGAGAGAGTTTGGATCCGCAGATTCT|GCCCGTGGAACACAGAGCATTCCTAATGACAGTCCTGCCCGGGGTGAGGGCACCCATTCTGAAGAGGAAGGCTTTGCCATGGATGAGGAGGACTCTGATGGAGAACTGAATACCTGGGAGCTGTCAGAAGGGACAAACTGTCCACCCAAGGAACAGCCTGGCGAT 41 1.0 0.880048150428755 0.675605359844071 Y Y 3.29227237536341 3.73808832274579 3.29227237536341 0 0.0 0.00335570469798641 Y 0.00335570469798641 N Y 1766 2654 ENSG00000108651 ENSG00000172301 + - 17 17 30228784 30186356 coding coding UTP6 C17orf79 30187923 30178883 - - 0.0 30192385 30180049 - + N - - N SA540 2 0.0 1.05882352941176 1 1 2 Y Y 0.0 0.0 17 1.36872394410781 1.55789717215524 1.55789717215524 1.36872394410781 4 - - 0.9926286644957242 HCT116-stranded 5.0 134844 GATCCTCTCACTTGGGATTATGTGGCAAGGCGAGAATTAGAGATTGAGTCACAGACAGAAGAGCAGCCTACAACGAAACAAGCCAAAGCAGTGGAGGTCGGCCGGAAGGAGGAGAGGTGCTGTGCTGTGTATGAAGAGGCAGTGAAGACTCTGCCAAC|AGCCCGTGGAACACAGAGCATTCCTAATGACAGTCCTGCCCGGGGTGAGGGCACCCATTCTGAAGAGGAAGGCTTTGCCATGGATGAGGAGGACTCTGATGGAGAACTGAATACCTGGGAGCTGTCAGAAGGGACAAACTGTCCACCCAAGGAAC 21 0.7136629786920481 0.719010301027325 0.7311286398589592 Y Y 3.53139268151438 3.79040344379773 3.53139268151438 2 0.0 0.0 Y 0.0 N Y 1766 2654 ENSG00000108651 ENSG00000172301 + - 17 17 30228784 30186356 coding coding UTP6 C17orf79 30187923 30178883 - - 0.0 30207592 30180049 - + N - - N SA540 1 0.0 1.0 1 0 2 Y Y 0.0 0.0 8 1.80270958492249 1.71368688937076 1.80270958492249 1.71368688937076 4 - - 0.99164851462527 HCT116-stranded 5.0 430168 GACTCTCGCGGCCTTCGTTGCTCGCACAGCTCCCTGCCCAGGCTAGGAGGCCGGCTTGCGGGGTTGAGTGGCCCGAGCTAAGGGTGCGGAGACCTAAGGGCGGCGACTACGACGGCGTTGATATCGGTGGTAACGACGGCCTCAGCAGGCGGGGAAGATGAAAGG|GTTCCTATTACTGTAACCATGCCAGAAATGACAGAGAATGAGACGCCTACAAAAAAGCAGCACAGAAAGAAAAACCGGGAGACACACAATGCAGTGGAGAGGCATAGAAAGAAGAAAATTAATGCTGGGATAAACAGAATAGGAGAGCTG 47 0.98801859879996 0.344952828895419 0.389085013139169 Y Y 3.5293265419746 3.6491271616355 3.5293265419746 1 0.0 0.0 Y 0.0 N Y 18638 18667 ENSG00000121579 ENSG00000176542 + - 3 3 113465147 113415493 coding utr5p NAA50 KIAA2018 113437841 113367232 - - 0.0 113464789 113393743 - + N - - N SA540 1 0.0 1.0 1 0 1 N Y 0.0 0.0 17 1.8360930957543893 1.46887447660351 1.8360930957543893 1.46887447660351 4 - - 0.966850740061078 HCT116-stranded 5.0 992 ATGAAGATAACCCTGTTGATGAGTATCAGATATTTAAAGCTATCTTTCAAACTATTCAAAATCGTAATCCTGTGTGGTATCAGGCACTGACTCACGGTCTTAATGAAGAACAAAGAAAACAGTTACAGGACATAGCAACTCTGGCTGATCAAAGAAGAGCAGCCCATG|TTCGCAACACAAGAACATACAAAAGACCGTAGCGACAACCATTTCTGACGCCTTCAACTTTTAAATCCAAATTACGTGAAACCACAAAGCATCAGTGGTGTCTCCCCGAGGAATCCAAGACCCCCCGGCCGGTTGCCAAGCCGCCGGAATTTCAGCAGGAGAGGAAGGCTCACCC 134 0.7878138553079058 0.866991469612288 0.5788304819730611 Y Y 3.41848849077886 3.3310150601850803 3.3310150601850803 4 0.0 0.0 Y 0.0 N N 12681 3283 ENSG00000205339 ENSG00000166478 + - 11 11 9469673 9550071 coding upstream IPO7 ZNF143 9406169 9481866 + + 0.0 9463744 9481687 + - N - - N SA540 4 0.0 1.5111111111111102 1 13 2 N Y 0.0 0.0 45 1.89173228047422 1.95849930213801 1.95849930213801 1.89173228047422 4 - - 0.9641342604026792 HCT116-stranded 5.0 72555 TTCTGCATTCTGAGAAGCTTAAGACATACTTTGAAGACAACCCTAGGGACCTCCAGCTGCTGCGGCATGACCTACCTTTGCACCCCGCAGTGGTGAAGCCCCACCTGGGCCATGTTCCTGACTACCTGG|GCCCAGAGTGAGCCTTACACAACCATCCACCAGCCTGGCTACTGCGCCTTCTATGACGAATGTGGGAAGAACCCAGAGCTGTCTGGAAGCCTCATGACACTCTCCAACGTGTCCTGCCTGTCCAACACGCCGGCCCGCAAGATCACAGGTGATCACCTGATCCTATTACAGAAGATCTGCCCCCGCCTCTACACCGGCC 22 0.887697584206212 0.8864964005866891 0.681076495167062 Y Y 3.49424793801946 3.5146370975884103 3.49424793801946 0 0.0 0.0 Y 0.0 N Y 5849 1253 ENSG00000136271 ENSG00000015520 + - 7 7 44614650 44580914 coding coding DDX56 NPC1L1 44605016 44552134 - - 0.0 44607717 44579941 - + N - - N SA540 1 0.0 1.0 1 0 1 N Y 0.0 0.0 5 1.17955071606039 1.85834876964232 1.85834876964232 1.17955071606039 4 - - 0.987878464646363 HCT116-stranded 5.0 135230 TAGATATTATATTACAAGAGCCAAATTGGTTTCTAAAATAGCTAAATATCCCCATGTGGAGGACTATCGCCGCACCGTGACAGAGATTGATGAGAAAGAATATATCAGCCTTCGGCTCATCATATCAGAGCTGAGGAATCAATAT|GGCTGAAAAACTGGGTGGTAGCTGAAGACGTGGTGTTTAAACCTGTGGCTGCCCCCTGGAACCCGGAGCACTGGCTACAGCGCCCACAGCTGACTCGGCAGGTCCTGGGAAAGGAGGACCTGACAGCTTTTTCCTTGGGAAGCCCCCTACCCCGCTACCTCTACC 14 0.8484819128723741 0.977319907639968 0.540032126717263 Y Y 3.5676145660496603 3.18871505582277 3.18871505582277 0 0.0 0.0 Y 0.0 N Y 16757 2416 ENSG00000131467 ENSG00000131480 + - 17 17 40995523 41002724 coding coding PSME3 AOC2 40976402 40996617 + + 0.0 40991397 41001103 + - N - 0.598557542835582 N SA540 1 0.0 1.0 1 0 3 Y Y 0.0 0.0 11 1.40210745493971 1.82496525881042 1.82496525881042 1.40210745493971 4 - 10.9090909090909 0.9894553886122852 HCT116-stranded 5.0 419871 GAAGGCATACGGCGAGCTTCCAGAGCATGCTAAAATCAATGAAACTGATACATTTGGTCCTGGAGATGATGATGAAATTCAGTTTGATGACATTGGAGATGATGATGAAGATATTGATGAC|GCATGGAGGGATTTTTGAAATCAGATGAGAGGCAGAGATTGGCCAAAGAAAGACGAGAAGAAAGAGAAAAATGTCTGGCTGCTCGGGAGCAACAGATCCTGGAGAAACAGAAAAGAGCCAGGCTGCAGTACGAAAAGCAAATGGAGGAGCGATGGCGAAAACTGGAAGAGCAGCGG 18 1.0 0.9273532327496592 0.643657446337435 Y Y 2.84284912476227 2.89359261981439 2.84284912476227 0 0.0 0.0 Y 0.0 N Y 15125 1319 ENSG00000173674 ENSG00000184368 + - X X 20159962 20135035 coding coding EIF1AX MAP7D2 20142636 20024831 - - 0.0 20148634 20082923 - + N - - N SA540 2 0.0 2.0 2 14 1 N Y 0.0 0.0 14 1.0126331619009 1.94737146519405 1.94737146519405 1.0126331619009 4 - - 0.926407606362082 HCT116-stranded 5.0 596208 TGGCATGATTTTGCTTTTTTTGATCCTGTAATGTATGAGAGTTTGCGGCAACTAATCCTCGCGTCTCAGAGTTCAGATGCTGATGCTGTTTTCTCAGCAATGGATTTGGCATTTGCAATTGACCTGTGTAAAGAAGAAGGTGGAGGACAG|AGATCATCTTCAGACACCAACGAAAGTGAAATAAAGTCAAATGAAGAGCCACTCCTAAGAAAGAGTTCTCGCCGGTTTGTCATCTTTCCAATCCAGTACCCTGATATTTGGAAAATGTATAAAC 5 1.0 0.824987475631195 0.5592808588517459 Y Y 3.46720988898117 3.37295958784206 3.37295958784206 1 0.0 0.0 Y 0.0 N Y 5179 4222 ENSG00000104517 ENSG00000048392 + - 8 8 103425069 103251346 coding coding UBR5 RRM2B 103264501 103216730 - - 0.0 103274143 103244532 - + N - - N SA540 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 5 1.21293422689229 1.10165585745263 1.21293422689229 1.10165585745263 4 - - 0.98929475014735 HCT116-stranded 5.0 72252 CCTCAGGGAACCCAGCCAGCACAGCAGCAGCAGCCTTGCCTCTATGAGATCAAACAGTTTCTGGAGTGTGCCCAGAACCAGGGTGACATCAAGCTCTGTGAGGGTTTCAATGAGGTGCTGAAACAGTGCCGACTTGCAAACG|AGCCACCCAGAGTTCCCTCACTGAAGATCTGAGCATGACCCGGGACGAGGCACTGCCGGACTCTCATTCTGCACAGGACTTCTATGAGAATTATGAGCCCAAAGAGATCCTGGGCAGGTAAAGCCCAAGCTTTCCCCACGAAGTGCTGTCCTAGGCTCCAGCAG 42 1.0 0.854990780342311 0.5813966604958969 N Y 3.5932183177339305 3.41848849077886 3.41848849077886 1 0.992980685415424 0.0 Y 0.0 N Y 22195 384 ENSG00000106153 ENSG00000164776 + - 7 7 56174269 56160689 coding utr5p CHCHD2 PHKG1 56169262 56148440 - - 0.0 56170560 56156668 - + N - 14.4801389727646 N SA540 12 0.0 4.0 1 11 1 N N 0.0 0.0 13 1.41323529188368 1.79158174797852 1.79158174797852 1.41323529188368 4 - 0.0769230769230769 0.9286562025323628 HCT116-stranded 5.0 607831 CCAAGAAGGTTGGGAAAGCACCAAAATCTGCATGTGGTGTGTGCCCAGGCAGACTTCGAGGGGTTCGTGCTGTAAGACCTAAAGTTCTTATGAGATTGTCCAAAACAAAGAAACATGTCAGCAGGGCCTATGGTGGTTCCATGTGTGCTAAATGTGTTCGTGACAGG|GGCTATCTGATGGGTTAGAGTGCCTTTGAGAAGAAATCAGTGGATACTGGATTTGCTCCTGTCAATGAAGTTTTAAAGGCTGTACCAATCCTCTAATATGAAATGTGGAAAAGAATGAAGAGCAGCAGTAAAAGAAATATCTAGTGAAAAAACAGGAAGCGTATTGA 31 0.998304325957549 0.582129310348166 0.611716967582876 Y Y 3.5303596117444904 3.47552369040616 3.47552369040616 2 0.0 0.0 Y 0.008955223880597 N Y 17133 6450 ENSG00000109475 ENSG00000198856 + - 4 4 109551568 109588976 coding coding RPL34 OSTC 109541722 109571740 + + 0.0 109543774 109588403 + - N - 0.242445516771445 N SA540 50 0.0 26.0 4 9 5 N Y 0.0 0.0 9 1.9139879543621496 1.48000231354747 1.9139879543621496 1.48000231354747 4 - 109.555555555556 0.9575102899712172 HCT116-stranded 5.0 453970 GCCCCCGCCACACGCACGCCGGGCGTGCCAGTTTATAAAGGGAGAGAGCAAGCAGCGAGTCTTGAAGCTCTGTTTGGTGCTTTGGATCCATTTCCATCGGTCCTTACAGCCGCTCGTCAGACTCCAGCAGCCAAGATGGTGAAGCAGATCGAGAGCAAG|GTCCTGCCCCACCCAGCTGTGTTTGCTTTTCTCCCGGATCCGGATGGAGGGGTTGCCCTGCCCGTGCCCAGCCCTGCCCCACTTCTGGCAGCTTAGGTCTCACTTAATGGCTGAGGGCTCCAGGACTCAGGCCCC 13 1.0 0.8290096339852092 0.563857320099972 Y Y 3.44247137319745 3.2776762169330604 3.2776762169330604 0 0.0 0.0 Y 0.0 N N 26947 3344 ENSG00000136810 ENSG00000188959 + - 9 9 113018920 112970469 coding utr5p TXN C9orf152 113006091 112952328 - - 0.0 113018692 112969902 - + N - - N SA540 1 0.0592105263157895 1.0 1 0 2 N Y 0.0592105263157895 0.0 8 1.6914312154828302 1.3353404332759198 1.6914312154828302 1.3353404332759198 4 - - 0.9926286644957242 HCT116-stranded 5.0 453971 GCCACACGCACGCCGGGCGTGCCAGTTTATAAAGGGAGAGAGCAAGCAGCGAGTCTTGAAGCTCTGTTTGGTGCTTTGGATCCATTTCCATCGGTCCTTACAGCCGCTCGTCAGACTCCAGCAGCCAAGATGGTGAAGCAGATCGAGAGC|AAGGAGGAAACACACCTGCTCCTGCAGAATCGATGGTCAATGCTGTTTGGATTAACAAGGAGAGAAGAAGCTCACTGTCCCTGGAAGAGGCAGATTCTGAGGTGGAGGGGAGGCTGGAGGAGGCTGCCCAGGGCTGCCTTCAGGCCCCCAAGTCTCCATGGCACACGCACCTGGAGATGCATT 85 1.0 0.905497252515256 0.231323881631087 Y Y 3.44247137319745 3.6491271616355 3.44247137319745 0 0.0 0.0 Y 0.0 N Y 26947 3344 ENSG00000136810 ENSG00000188959 + - 9 9 113018920 112970469 coding coding TXN C9orf152 113006091 112952328 - - 0.0 113018692 112963754 - + N - - N SA540 2 0.0193548387096774 1.01818181818182 1 1 2 N Y 0.0193548387096774 0.0 55 1.72481472631473 2.0586498346337 2.0586498346337 1.72481472631473 4 - - 0.9826147234043308 HCT116-stranded 5.0 590442 AGGAGCTGTTGGACAAATATCTTATTCCCAATGCTACACAACCAGAAAGTAAGGTGTTCTACTTGAAAATGAAAGGAGATTATTTTAGGTATCTTTCTGAAGTGGCATCTGGAGACAACAAACAAA|CGGAGCGGGCACTGGACACAATGAACTTTGAGATGCTCAAAGGCCAGCCTATTCGCATCATGTGGTCCCAGCGAGACCCAGGACTTCGCAAGTCAGGTGTGGGCAACATCTTCATCAAGAACCTGGAGGACTCCATTGACA 5 0.930621385569247 0.786949438824452 0.14070489078179702 Y Y 3.51257095804863 3.45976132345673 3.45976132345673 0 0.0 0.0 Y 0.0 N Y 35018 461 ENSG00000166913 ENSG00000101104 + - 20 20 43537173 43587676 coding coding YWHAB PABPC1L 43514317 43538703 + + 0.0 43532757 43541301 + - N - - N SA540 2 0.0 1.2 1 1 1 Y Y 0.0 0.0 5 1.16842287911643 1.50225798743541 1.50225798743541 1.16842287911643 4 - - 0.9331202911106932 HCT116-stranded 5.0 2067 TGCTGGTGCTGGGGCCGGAGGAGGGACGCGCCGGAGCGGGACCGACGGGACCGAGCGAGCGACCGACGCGCCACCCGCCGACGCCTCAGCCGCTTGGGGCCCGCACGGACCCTCTACTTCAGT|TTCAGCGCAAGTACCTCTACCAAAAAGTGGAACGAACCCTGTGTCAGCCCCCCACCAAGAATGAGTCGGAGATTCAGTTCTTCTACGTGGATGTGTCCACCCTGTCACCAGTCAACACCACATACCAGCTCCGGGTCAGCCG 9 1.0 0.366340050725599 0.7951228418521321 Y Y 3.45872825368684 3.58064844605001 3.45872825368684 3 0.0 0.0 Y 0.011858915581637 N Y 14117 1551 ENSG00000168092 ENSG00000149577 + - 11 11 117047610 117068160 utr5p coding PAFAH1B2 SIDT2 117014983 117049449 + + 0.0 117015134 117052523 + - N - 0.64518769276581 N SA540 1 0.0 1.0 1 0 1 N Y 0.0 0.0 15 1.02376099884487 1.61353635687507 1.61353635687507 1.02376099884487 4 - 2.2 0.987467552360162 HCT116-stranded 5.0 135526 TCTGACTCTGTGTAAACAGTGCCACCAGAAGAACCCAGTACCCAAGAGAGGCCTTGCACCAAAGCCCATGACTTTTAAGGACATAGACTCCACATGCCAAGTTGAAATACTTGACATGCAGTCCAGTGCCGATG|ATGCGCTACTTGAATCTAATTATGAAGAGACAAGAGACAAACCCAGATTGAGGGGCATTCAGCAAAATAATTGCCCTGTACTCTTTAAAAAACGGCAATGTTGAGAAAGACAAAGAAAGAC 9 0.965669983534258 0.9218682756850268 0.702692739770514 Y Y 3.6616970333194314 3.53824925764641 3.53824925764641 1 0.0 0.0 Y 0.0 N N 1189 1522 ENSG00000184619 ENSG00000198150 + - 17 17 8280029 8263538 coding utr3p KRBA2 AC135178.1 8271955 8261731 - - 0.0 8273105 8262497 - + N - 0.437757797735758 N SA540 1 1.0 1.0 1 0 1 N Y 0.0 1.0 6 1.37985178105178 1.0794001835646998 1.37985178105178 1.0794001835646998 4 - 26.6666666666667 0.987878464646363 HCT116-stranded 5.0 719891 CCTATGAAAATGACAAATGAGCAACGCATCCGGATGACGGTTCCCTGTCTCTGAAAGACCTTTCTCTGGAAGAGGAGTCTGCATTGTAGTGTCTCAAAGACACAATAAACTTCCTATGGTCTGCACTGTTGTGATATTACATTTTT|ATAGATGGCTCCCCAATACCAGAAGTGAGTTCGGCAAAGAGAAGGCCACGGAGAATGACCCCATTTTGGAGAGGGGTTTCCCTCAGGCCTATTGGAGCCTCCTGCCGGGATGATTCTGAGTGTATCACAAGGCTATGCAGAAAGGA 15 0.881741744854183 0.959961133824378 0.5935182980985071 Y Y 3.4048855493250496 3.716171579866991 3.4048855493250496 0 0.95221843003413 0.0 Y 0.645051194539249 N N 7296 228 ENSG00000164405 ENSG00000164406 + - 5 5 132203723 132210738 utr3p coding UQCRQ LEAP2 132202252 132208014 + + 0.0 132203400 132209642 + - N - - N SA540 1 0.0 1.0 1 0 1 N Y 0.0 0.0 5 1.35759610716385 1.48000231354747 1.48000231354747 1.35759610716385 4 - - 0.986974862994849 HCT116-stranded CGHSA0756 5.0 1694 GACGGCTACCAGCGCTGTATGATGGCGCAGTACAACCGGCACGACAGCCCCGAAGATGTGAAGCGACGAGCCATGGCCGACCCTGAGGTGCAGCAGATCATGAGTGACCCAGCCATGCGCCTTATCCTGGAACAGATGCAGAAGGACCCCCAGGCACTCAGCGA|CCTCTGCCCAGCCTGCCTCTCGCCATGCGGCAGCCTGAACTTTCCACCTCCCCGGAGAGGCTTTGGCTGGTTTGTGATGTTGGCATCTGAGCTGTGGGCCAGGATCGGAACTACTTCCTGGCCTGGGTACGA 17 1.0 0.8926976070874691 0.100730956675228 Y Y 3.4284977093830498 3.29908909870209 3.29908909870209 0 0.0 0.00336700336700346 Y 0.00336700336700346 N N 19538 565 ENSG00000168439 ENSG00000149781 + - 11 11 63972015 63991354 coding intron STIP1 FERMT3 63952744 63974150 + + 0.0 63971094 63974342 + - N - 0.0341003147637437 N SA540 2 0.0 1.22222222222222 1 2 1 N Y 0.0 0.0 9 1.6246641938190298 1.25744557466815 1.6246641938190298 1.25744557466815 4 - 0.111111111111111 0.9410619236005372 HCT116-stranded 5.0 2409 TCAGCACCTGGCAGAAAACCCCTGCAGAGTCGAGGGAGCACAACCGGGACTGCATCCTCCTCGACTTCTTTGACGACCACGACATCTGGCACTTCCTCTCCTCCATCGCCATGTTCGGGTCCTTCCT|GCTTTCCCCAGACATGGCCAACAAGGGTCCTTCCTATGGCATGAGCCGCGAAGTGCAGTCCAAAATCGAGAAGAAGTATGACGAGGAGCTGGAGGAGCGGCTGGTGGAGTGGATCATAGTGCAGTGTGGCCCTGATGTGGGCCGC 10 1.0 0.9020927393340508 0.5758361921420739 Y Y 3.23887075137909 3.58064844605001 3.23887075137909 3 0.992154826800496 0.0 Y 0.0 N Y 1551 732 ENSG00000149577 ENSG00000149591 + - 11 11 117068160 117075498 coding utr5p SIDT2 TAGLN 117049449 117070037 + + 0.0 117066631 117073718 + - N - 0.135897661783776 N SA540 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 6 1.3019569224440202 1.59128068298713 1.59128068298713 1.3019569224440202 4 - 20.3333333333333 0.991239328436429 HCT116-stranded CGHSA0410 5.0 719931 GCGCTCGCCCGGCAGCCAGGGCGTCAGGGACTTCATTGAGAAACGCTACGTGGAGCTGAAGAAGGCGAATCCCGACCTACCCATCCTAATCCGCGAATGCTCCGATGTGCAGCCCAAGCTCTGGGCCCGCTAC|GGAAAGGAAGGGGGCTGGCTCGGAGGAAGAGAGGTGGGGAGGTGATCAGGGTTCACAGAGGAGGGAACTGAATGACATCCCAGGATTACATAAACTGTCAGAGGCAGCCGAAGAGTTCACAAGTGTGAAGCCTGGAAGCCGGCGGGTGC 11 1.0 0.365863397910282 0.4473292587704629 Y Y 3.51935717616377 2.71419614744645 2.71419614744645 1 0.992507771194771 0.0 Y 0.0 N Y 2178 575 ENSG00000131495 ENSG00000170458 + - 5 5 140027370 140013286 coding utr5p NDUFA2 CD14 140018325 140011313 - - 0.0 140026841 140012877 - + N - - N SA540 1 0.0 1.0 1 0 1 N Y 0.0 0.0 7 1.12391153134056 1.5801528460431695 1.5801528460431695 1.12391153134056 4 - - 0.972221266862618 HCT116-stranded 5.0 381806 CCTGCGCCCTCCCTCCCCTGTAAGGGTCGCAGTCGGCAGCAGGGGGCAGCGAGCCCCGCCCTCCCCAGCTGAGGGGGCGGGAGGCCACGCCCCGGGGGGGGCTCCAGCGACCGACGGTTGAGCCCCTTGCGTTGTTCTCCTCCTCCCGGCCGTGTCGCACCGCCGGGACCGGCAGC|CTGGCCGCCTCGGCGGGGCCTGGGTTCCCACGCCCGCCAGGCTCCGCTCTACTCCGCCGCTTCCGGGTGTGCGCGGAGGCGCTGGGGCGGTGCCCTAGCCCGAGCCGCCCCG 17 1.0 0.23402445162659305 0.8132510574689291 Y Y 3.21228736308742 3.07680408206379 3.07680408206379 0 0.0 0.0 Y 0.0 N Y 621 227 ENSG00000237172 ENSG00000102871 - + 16 16 67185117 67194201 intron utr5p B3GNT9 TRADD 67182008 67188083 - - 0.0 67184574 67193741 + - N - 4.16725214574798 N SA540 1 0.0 1.0 1 0 1 N Y 0.0 0.0 12 1.54676933521127 0.901354792461244 1.54676933521127 0.901354792461244 4 - 1.08333333333333 0.96185091500485 HCT116-stranded 5.0 719824 TGGGGCTGCTGAGCCAGGCGTTGTGGGGCAGATGATCGAGGCAGCTGAAGAGCGCCCGTGGCTGTGGGTAGTCTATATTCTAACTGTAGCCCTTCCTGTGTTCCTGGTTATCCTCTTCTGCTGTTCTGGAAA|GCATCTTCATGATACAGTTAAGAGGAATCTTGACAGCGCCACTTCCCCTCAGAATGGCGATCAACAGAATGGCTACGGGGACCTCTTTCCTGGGCATAAGAAGACTCGCCGGGAGGCCCCTCTGGGAGTTGCCATCTCTTCCAATGGACTGCCTCCAGCCTCCCCCCTCGGTCA 20 0.7358550815240501 0.9050630080135708 0.611302699392417 Y Y 3.1746082532591804 3.84271856484967 3.1746082532591804 0 0.0 0.0 Y 0.0 N Y 61529 5869 ENSG00000127022 ENSG00000161021 + - 5 5 179157926 179223512 coding coding CANX MAML1 179105629 179159851 + + 0.0 179150780 179192327 + - N - - N SA540 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 5 1.29082908550005 1.6246641938190298 1.6246641938190298 1.29082908550005 4 - - 0.979901953845457 HCT116-stranded 5.0 104313 GTCAATACCACAAACCAGCAAGCAAAATTCCTGCCTTTCTAAATGTGGTGGATATTGCTGGCCTTGTGAAAGGAGCTCACAATGGGCAGGGCCTGGGGAATGCTTTTTTATCTCATATTAGTGCCTGTGATGGCATCTTTCATCTAACAC|ACAGGTGATTTGGCTTCTGCACAGTTAGGAGGAGCACCAAACCGATGGGAGGTTTTGTCAGCCACACCTACAACTATAAAAGATGAAGCTGGTAATCTAGTCCAGATTCCAAGTGCTGCTACTTCAAGTGGGCAGTATGTTCTTCCCCTTCAGAATTTGCAGAAT 20 1.0 0.5440403142164699 0.821590737066274 N Y 3.612079893993029 3.63721963736088 3.612079893993029 1 0.0 0.0 Y 0.0 N Y 14852 7361 ENSG00000138430 ENSG00000172845 + - 2 2 175113426 174830430 coding coding OLA1 SP3 174937175 174771187 - - 0.0 175087761 174820960 - + N - - N SA540 6 0.0 3.3 1 9 1 N N 0.0 0.0 10 1.68030337853886 1.7693260740905905 1.7693260740905905 1.68030337853886 4 - - 0.901287021355104 HCT116-stranded 5.0 104414 AATGGCATCACTGAGAAGGAATATAAGACTTACAAGGAGAACTTTCTGAAGCGCTTCCAGCTTACCAAGTTGCCTCCATATCTAATCTTTTGTATCAAGAGATTCACTAAGAACAACTTCTTTGTTGAGAAGAATCCAACTATTGTCAATTTCCCTATTAC|GTCTGGTCTTCTCTCGTCTGAGCCCTGAGTACTACGACCTGGCAAGAGCCCACCTGCGTGATGAGGAGAAATCCTGCCCGTGCCTGGCCCAGGAGGGCCCCCAGGGTGACCTGTTGACCAAAACACAGGAGCT 13 1.0 0.960713021788739 0.8064826659012281 N Y 3.5110433747387795 3.36079094374226 3.36079094374226 0 0.0 0.0 Y 0.0 N Y 9039 118 ENSG00000168883 ENSG00000115523 + - 2 2 85876406 85925977 coding coding USP39 GNLY 85829979 85912298 + + 0.0 85868241 85922443 + - N - - N SA540 1 0.0 1.0 1 0 2 N N 0.0 0.0 5 1.6691755415949 1.26857341161212 1.6691755415949 1.26857341161212 4 - - 0.990683230360869 HCT116-stranded 5.0 181209 CCACCCCCGCTGCCCCCCAGCCCCTGCAGATGGGGCCCTGCGCCTACGAGATCAGGCAGTTCCTGGACTGTTCCACCACTCAGAGTGACCTGTCCCTGTGTGAGGGCTTCAGCGAGGCCCTGAAGCAGTGCAAGTACTACCATG|TTTCCCAGACAGTCCTGGCCCAGCTGGATGCACTGCTGGTCTTCCCAGGCCAAGTGGCTCAACTCTCCTGCACGCTCAGCCCCCAGCACGTCACCATCAGGGACTACGGTGTGTCCTGGTACCAGCAGCGGGCAGGCAGTGCCCCTCGATATC 20 1.0 0.946255588770084 0.658498603765291 Y Y 3.74656995804013 3.39487633072086 3.39487633072086 1 0.0 0.0 Y 0.0 N Y 7145 77 ENSG00000250479 ENSG00000128218 + - 22 22 24110630 24096655 coding coding CHCHD10 VPREB3 24108021 24094930 - - 0.0 24108315 24095385 - + N - - N SA540 2 0.0 1.375 1 3 2 Y Y 0.0 0.0 8 1.5690250090992002 1.27970124855609 1.5690250090992002 1.27970124855609 4 - - 0.9822055573349028 HCT116-stranded 5.0 181208 AGCGCTGCGGCATTTGTCCCCGCGACAGCACCGCTGCCGCCGTCTCTAAGGTCGCCCGGGTCCCACCGCCGCCACCATGCCTCGGGGAAGCCGCAGCGCGGCCTCCCGGCCAGC|CAGTTTCCCAGACAGTCCTGGCCCAGCTGGATGCACTGCTGGTCTTCCCAGGCCAAGTGGCTCAACTCTCCTGCACGCTCAGCCCCCAGCACGTCACCATCAGGGACTACGGTGTGTCCTGGTACCAGCAGCGGGCAGGCAGTGCCCCTCGATATCTCC 7 1.0 0.190741167124272 0.21033328783913 Y Y 3.15206901576442 3.38230645903694 3.15206901576442 1 0.0 0.0 Y 0.0 N Y 7145 77 ENSG00000250479 ENSG00000128218 + - 22 22 24110630 24096655 coding coding CHCHD10 VPREB3 24108021 24094930 - - 0.0 24110021 24095385 - + N - - N SA540 1 0.0116279069767442 1.0 1 0 2 N Y 0.0116279069767442 0.0 5 0.956993977181074 1.12391153134056 1.12391153134056 0.956993977181074 4 - - 0.940037881224715 HCT116-stranded 5.0 607634 TTTTCTGTGTATGGGAATGCAATGATTCCTCCAGTAGCACCTATCCCTGATGGTGCTGGAGGACCCATATTTAATGGCCCTCATGCTGCAGACCCTTCTTGGAACTCACTGATAAAGATGGTTTCCAGCTCCACGGAAAATAATGGCCCTCAAACG|GCTCACTTATCTAAAGAATATGAGGAGGCTAATTTCAGAGCTATATGTGCGAGATAACTGCCACCCTTTCAAAGCCACTGTGTTGGTTTGGATTCAGCTTCCAATGTGGATCTTCATGTCTTTTGCTCTCCGGAATTTAAGCACGGGGGCAGC 11 1.0 0.885377721875675 0.131123723631082 Y Y 3.62088820895798 3.4471914517728104 3.4471914517728104 1 0.0 0.0 Y 0.0 N Y 11007 541 ENSG00000132466 ENSG00000163626 + - 4 4 74124515 73935472 coding coding ANKRD17 COX18 73939093 73921797 - - 0.0 73942657 73931130 - + N - - N SA540 1 0.0 1.0 1 0 1 Y Y 0.0 0.0 6 1.54676933521127 1.52451366132334 1.54676933521127 1.52451366132334 4 - - 0.9717951683662768 HCT116-stranded 5.0 573168 TTGGGCGTGTACCAGATTTTATCCTGGAAAAGATACCAGCCATGTTGGGTATTGATGGTCTCTGTGCTACTCCATCACTGGAAGGCTTTGAAGAAGGTGAATATGAAACTCCTGGTGAATATAAGAGAAAGAGAAGACAAAGTGTAGGA|GGTTGACAATGGTCTCCAGGATGGTCTCTACCATGCTATCTGGCCTACTGTTTTGGCTGGCATCTGGATGGACTCCAGCATTTGCTTACAGCCCCCGGACCCCTGACCGGGTCTCAGAAGCAGATATCCAGAGGCTGCTTCATGGT 11 0.8361358325637809 0.5612446049140539 0.641297700326298 Y Y 3.24057974892742 3.71823771940677 3.24057974892742 0 0.0 0.0 Y 0.0 N Y 8614 284 ENSG00000198826 ENSG00000166922 + - 15 15 32932150 32989299 coding intron ARHGAP11A SCG5 32907345 32933877 + + 0.0 32917834 32935787 + - N - 0.0467666144551354 N SA540 2 0.0 2.0 2 6 1 N Y 0.0 0.0 6 1.59128068298713 1.49113015049144 1.59128068298713 1.49113015049144 4 - 0 0.9424635739694208 HCT116-stranded 5.0 135491 CCAGAGCTCAGAAAAAAGGTACATCCAGCAGTGGTCATTCGACAACGAAAGTCATACCGTAGAAAAGATGGCGTGTTTCTTTATTTTGAAGATAATGCAGGAGTCATAGTGAACAATAAAGGCGAGATGAAAGG|GCATTCTCTCCAGCAGGTGACTGGGCATGACCACTACAATGCTGATCTGAAACCGATCGATGGGTTCAATGGAAGGTTTGGCTACCGCAGGAACACTCCAGCCCTCCGTCAGAGCACGTCCGTCTTCGGAGAGGTCACCCACTTCCCTCTGT 27 0.646235178113931 0.8886096907116608 0.564848018815723 Y Y 3.38912318237562 3.6491271616355 3.38912318237562 2 0.0 0.0 Y 0.0 N Y 38438 154 ENSG00000125691 ENSG00000214556 + - 17 17 37010096 36997708 coding coding RPL23 C17orf98 37004118 36991341 - - 0.0 37006615 36991599 - + N - - N SA540 2 0.0 1.84615384615385 1 11 2 Y Y 0.0 0.0 13 1.20180638994833 2.03639416074577 2.03639416074577 1.20180638994833 4 - - 0.958433024480727 HCT116-stranded 5.0 653344 TTTTCCAGAGAAGAGAAGCTTTACTGGTGTTCCAGCCCTAAGGCTCATATGACATTAACAGACAAGACACTTTTCAGAAAGACAGG|CAACGTGTTGGACCTTCCGGAGCTTCTCAGAAGACAGAGGGTTTTCTTTTGAGGTAAATTTGATAGTACATTTTGATAGTACGGGAGGCGATACGGCATGGTGACAGAAAAGCGCCGGCTTGGTTAGCAGGACCACCTGGCAGGGCTGCAGGCTGTGCCACTTACC 50 1.0 0.746726410189572 0.826842775625016 Y Y 3.20657406753552 3.70210463009675 3.20657406753552 1 0.988418053129883 0.0 Y 0.9536722125195328 N Y 544 425 ENSG00000225484 ENSG00000226381 + - 10 10 81586350 81546199 intron intron RP11-773D16.1 RP11-119F19.2 81563813 81524486 - - 0.0 81564241 81526080 - + N - - N SA540 3 0.482456140350877 3.0 3 10 1 N Y 0.0 0.482456140350877 10 0.934738303293142 1.26857341161212 1.26857341161212 0.934738303293142 4 - - 0.916181395093652 HCT116-stranded 5.0 104112 AGGAGCTGGAGACCAGCCCGGCCAACACAGCGAAACCCCGTCTCCACCAAAAAAAACCGAAAACCAGTCAGGCGTGGCGGTGCGCGCCTGCAATCGCAGGCACTCGGCAGGCTGAGGCAGGAGAATCAGGCAGGGAGGTTGCAGTGAGCCGAGATGGCAGCAGTACCGTCCAGCCTTGG|AGGAGGGGAAGCACACAGATGGGCAGGTGCAGGAGCTGGGGTGAGTGCTGTGGGGCTCCGGCCCCATGGTAGCGTCTAGGGGTGGGTGCCTGTGACTCCCAAAGCCCAAGTAGGCATGTGTTACAGTGATCTTTTAGTTTTGCCATCTGCAGAGGGCTTAAGTGTTAACCAGCTCAG 94 0.800898370266833 0.739940126480674 0.5995970379552329 N Y 3.6282434885265897 2.98992264086242 2.98992264086242 3 0.9492949722261792 0.0 Y 0.0 N N 3858 282 ENSG00000144401 ENSG00000162944 + - 2 2 208490652 198540769 utr3p intron METTL21A RFTN2 208445355 198435524 - - 0.0 208474573 198479411 - + N - 25.4225329981144 N SA540 36 1.0 9.91304347826087 2 46 2 N N 1.0 1.0 46 1.98075497602594 1.93624362825008 1.98075497602594 1.93624362825008 4 - 0 0.926212730064236 HCT116-stranded 5.0 430560 GGCTGGGACGGCTGTGGGTGGGGAGAAGCCGGGAGGACTGGGTGCGCCTGCAGGGATCGGAAGCCGGTTGGGGTGTGAGAGGTTTTCTCGCTC|TAGGGACAGCCGGTGTAGCCGGAGACGTGGTCGCCACCAAAATTGTGGAGCTATCAAAAAAGAACCGGCTGTTGATGGCAGAATCAGAGGGTGCAAAAACCAGGGTGAAGCAGCTGACCAATCGCATCCAGGAGCTGGAGCGGGAAGTGAGGGGCCTTGGTC 11 1.0 0.996516754109323 0.131123723631082 Y Y 3.41103992525442 3.5339931873874804 3.41103992525442 0 0.989289314516129 0.0 Y 0.0 N Y 9003 120 ENSG00000181061 ENSG00000244607 + - 3 3 42846023 42814745 utr5p intron HIGD1A CCDC13 42798669 42734155 - - 0.0 42845928 42794209 - + N - 0.162604151657406 N SA540 1 0.0 1.0 1 0 1 N Y 0.0 0.0 5 0.823459933853482 1.37985178105178 1.37985178105178 0.823459933853482 4 - 5.4 0.9800292311778108 HCT116-stranded CGHSA0605 5.0 572499 GGTCGGACCTGCCTCAATACCGCCAAGGTCTTTCATTTCTTGTTCGCTTACTTTCGTGAAATCCTCACATCGTTTTAATGGTACTAGTCAAGACAAGAAAATCAACAGGCTTTCAGCCTTGAGGCAACATTGGATATTATTGAG|GGTTGAAAAAAAACTAAATCCCCATTCACCGCACACGGCACTCTTCACTAACCACGAGAAACCCCACCCAACACCATCCACCGGGTCCCTCCCTTGCCCTCCTAATCCCGCCAGCGAGGTGTCTTCTCTCTGCCGCCCGCTAGAGGGCGTGTAC 14 0.9490630341983292 0.52235792353001 0.249880713249634 Y Y 3.59528445727371 3.37767966641742 3.37767966641742 0 0.0 0.0 Y 0.0 N N 303 3179 ENSG00000198146 ENSG00000021776 + - 15 15 35280488 35262040 utr5p upstream ZNF770 AQR 35270542 35147732 - - 0.0 35279758 35262232 - + N - - N SA540 2 0.0 1.5 1 4 1 N Y 0.0 0.0 8 1.5690250090992002 1.59128068298713 1.59128068298713 1.5690250090992002 4 - - 0.92604084799239 HCT116-stranded 5.0