Sample name 	 CAGE ids 	 group B lymphoblastoid cell line GM12878 ENCODE 	 CNhs12331, CNhs12332, CNhs12333 	 ENCODE Chronic myelogenous leukemia cell line K562 ENCODE 	 CNhs12334, CNhs12335, CNhs12336 	 ENCODEepitheloid carcinoma cell line HelaS3 ENCODE 	 CNhs12325, CNhs12326, CNhs12327 	 ENCODEHepatocellular carcinoma cell line HepG2 ENCODE 	 CNhs12328, CNhs12329, CNhs12330 	 ENCODEAdipocyte - omental 	 CNhs11054, CNhs12067, CNhs12068 	 omental adipocytesAmniotic membrane cells 	 CNhs12502, CNhs12503, CNhs12379 	 mesenchymal cells Astrocyte - cerebellum 	 CNhs11321, CNhs12081, CNhs12117 	 astrocytes, cerebellumAstrocyte - cerebral cortex 	 CNhs10864, CNhs11960, CNhs12005 	 astrocytes, cerebral cortexCD14 monocyte derived endothelial progenitor cells 	 CNhs10858, CNhs11897, CNhs11904 	 blood cellsCD14 monocytes - mock treated 	 CNhs13468, CNhs13484, CNhs13491 	 blood cellsCD14 monocytes - treated with BCG 	 CNhs13465, CNhs13475, CNhs13543 	 blood cellsCD14 monocytes - treated with B-glucan 	 CNhs13474, CNhs13489, CNhs13495 	 blood cellsCD14 monocytes - treated with Candida 	 CNhs13473, CNhs13488, CNhs13494 	 blood cellsCD14 monocytes - treated with Cryptococcus 	 CNhs13472, CNhs13487, CNhs13546 	 blood cellsCD14 monocytes - treated with Group A streptococci 	 CNhs13469, CNhs13532, CNhs13492 	 blood cellsCD14 monocytes - treated with IFN N-hexane 	 CNhs13466, CNhs13476, CNhs13490 	 blood cellsCD14 monocytes - treated with Salmonella 	 CNhs13471, CNhs13485, CNhs13493 	 blood cellsCD14 monocytes - treated with Trehalose dimycolate TDM	 CNhs13467, CNhs13483, CNhs13544 	 blood cellsCD14 Monocytes 	 CNhs10852, CNhs11954, CNhs11997 	 blood cellsCD19 B Cells, pluriselect, donor090612 	 CNhs12183, CNhs12185, CNhs12188 	 blood cellsCD19 B Cells 	 CNhs12343, CNhs12352, CNhs12354 	 blood cells CD4 T Cells 	 CNhs10853, CNhs11955, CNhs11998 	 blood cellsCD4 CD25 CD45RA memory regulatory T cells expanded 	 CNhs13204, CNhs13811, CNhs13812 	 blood cellsCD4 CD25 CD45RA naive conventional T cells expanded 	 CNhs13202, CNhs13813, CNhs13814 	 blood cellsCD8 T Cells pluriselect donor090309 	 CNhs12176, CNhs12178, CNhs12180 	 blood cellsCD8 T Cells 	 CNhs10854, CNhs11956, CNhs11999 	 blood cellsChorionic membrane cells 	 CNhs12504, CNhs12506, CNhs12380 	 mesenchymal cells Ciliary Epithelial Cells 	 CNhs10871, CNhs11966, CNhs12009 	 epithelial cellsEndothelial Cells Aortic 	 CNhs10837, CNhs12495, CNhs11375, CNhs12022 	 endothelial cellsEndothelial Cells Artery 	 CNhs12496, CNhs11977, CNhs12023 	 endothelial cellsEndothelial Cells Lymphatic 	 CNhs10865, CNhs11901, CNhs11906 	 endothelial cellsEndothelial Cells Umbilical vein 	 CNhs10872, CNhs11967, CNhs12010 	 endothelial cellsFibroblast Aortic Adventitial 	 CNhs10874, CNhs11968, CNhs12011 	 fibroblastsFibroblast Cardiac 	 CNhs12498, CNhs11378, CNhs12027, CNhs11909, CNhs12057, CNhs12061 	 fibroblastsFibroblast Periodontal Ligament 	 CNhs10867, CNhs11962, CNhs11907, CNhs12493, CNhs11953, CNhs11996 	 fibroblastsFibroblast skin dystrophia myotonica 	 CNhs11353, CNhs11354, CNhs11913 	 fibroblastsFibroblast skin spinal muscular atrophy 	 CNhs11074, CNhs11911, CNhs11912 	 fibroblastsGingival epithelial cells 	 CNhs11061, CNhs11896, CNhs11903 	 epithelial cellsHepatocyte 	 CNhs12340, CNhs12349, CNhs12626 	 hepatocytesMacrophage - monocyte derived 	 CNhs10861, CNhs11899, CNhs12003 	 blood cells Mast cell expanded and stimulated 	 CNhs13925, CNhs13927 	 blood cellsmature adipocyte 	 CNhs12558, CNhs12559, CNhs12560, CNhs12562 	 mature adipocytesMelanocyte - dark 	 CNhs12591, CNhs12346, CNhs12570 	 melanocytesMeningeal Cells 	 CNhs11320, CNhs12080, CNhs12731 	 meningeal cellMesenchymal precursor cell - adipose 	 CNhs12363, CNhs12364, CNhs12365 	 mesenchymal cellsMesenchymal precursor cell - bone marrow 	 CNhs12366, CNhs12367, CNhs13098 	 mesenchymal cellsMesenchymal precursor cell - cardiac 	 CNhs12368, CNhs12369, CNhs12370, CNhs12371 	 mesenchymal cellsMesenchymal precursor cell - ovarian cancer left ovary 	 CNhs12372, CNhs13092, CNhs12376, CNhs13094 	 mesenchymal cellsMesenchymal precursor cell - ovarian cancer metastasis 	 CNhs12374, CNhs13093, CNhs12378, CNhs13097 	 mesenchymal cellsMesenchymal precursor cell - ovarian cancer right ovary 	 CNhs12373, CNhs12375, CNhs12377, CNhs13507, CNhs13096 	 mesenchymal cellsMyoblast 	 CNhs10870, CNhs11965, CNhs11908 	 muscle cellsNatural Killer Cells 	 CNhs10859, CNhs11957, CNhs12001 	 blood cellsNucleus Pulposus Cell 	 CNhs10881, CNhs12019, CNhs12063 	 nucleus pulposus cellsOlfactory epithelial cells 	 CNhs13816, CNhs13817, CNhs13818, CNhs13819 	 epithelial cellsPericytes 	 CNhs11317, CNhs12079, CNhs12116 	 pericytesPeripheral Blood Mononuclear Cells 	 CNhs10860, CNhs11958, CNhs12002 	 blood cellsProstate Stromal Cells 	 CNhs10883, CNhs11973, CNhs12015 	 epithelial cellsRenal Proximal Tubular Epithelial Cell 	 CNhs11330, CNhs12087, CNhs12120 	 epithelial cellsRetinal Pigment Epithelial Cells 	 CNhs10842, CNhs11338, CNhs12096, CNhs12733 	 epithelial cellsSalivary acinar cells 	 CNhs12810, CNhs12811, CNhs12812 	 acinar cellsSebocyte 	 CNhs10847, CNhs11951, CNhs11995 	 epithelial cellsSkeletal Muscle Cells 	 CNhs11083, CNhs11983, CNhs12040, CNhs12053, CNhs12056, CNhs12060 	 muscle cellsSkeletal Muscle Satellite Cells 	 CNhs10869, CNhs11964, CNhs12008 	 muscle cellsSmall Airway Epithelial Cells 	 CNhs10884, CNhs11975, CNhs12016 	 epithelial cellsSmooth muscle cells - airway asthmatic 	 CNhs14183, CNhs14184, CNhs14186, CNhs14187, CNhs14188, CNhs14189 	 Smooth muscle cells - airway control 	 CNhs14190, CNhs14191, CNhs14192, CNhs14193 	 muscle cellsSmooth Muscle Cells - Brain Vascular 	 CNhs10863, CNhs11900, CNhs12004 	 muscle cellsSmooth Muscle Cells - Colonic 	 CNhs10868, CNhs11963, CNhs12007 	 muscle cellsSmooth Muscle Cells - Prostate 	 CNhs11920, CNhs11976, CNhs11910 	 muscle cellsSmooth Muscle Cells - Subclavian Artery 	 CNhs11090, CNhs11990, CNhs12048 	 muscle cellsSmooth Muscle Cells - Tracheal 	 CNhs11329, CNhs12567, CNhs12894 	 muscle cellsSmooth Muscle Cells - Umbilical Artery 	 CNhs11091, CNhs11991, CNhs12049 	 muscle cellsTenocyte 	 CNhs12639, CNhs12640, CNhs12641 	 fibroblastsUrothelial Cells 	 CNhs11334, CNhs12091, CNhs12122 	 epithelial cellsWhole blood, ribopure, donor090309 	 CNhs11675, CNhs11671, CNhs11948 	 blood cellsWhole blood, ribopure, donor090612 	 CNhs11672, CNhs11673, CNhs11949 	 blood cells