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{"sheet":"Altered timing regions","index":0,"n_rows":99,"n_cols":8,"rows_kept":99,"merged":[[0,0,0,9]],"flags":["formulas_cached_only"]}
["Suppl. Data 1. Genomic regions displaying altered replication timing in mES H1-TKO cells"]
["Chromosome (positions are from mm9)","start","end","mofification type","GC content","gene density","\nmES WT ORIs (this work)","Differential H3K4me1/3 (data from Geeven et al., 2015. Genome Biol 16:289)"]
["chr1",64511060,65032630,"Advanced","0.42","0.57982629369","0.0231205782541","0.0402438790575"]
["chr1",114632700,117223600,"Advanced","0.38","0.0","0.0113798294029","0.00204446331391"]
["chr1",128099400,128585200,"Advanced","0.42","1.0","0.0110703993413","0.00329147797448"]
["chr10",79701940,81001900,"Advanced","0.54","0.691213575802","0.0905081694821","0.0269792916705"]
["chr10",82558070,83082280,"Advanced","0.45","0.638272829591","0.010463363919","0.0120104538258"]
["chr10",87599270,88122520,"Advanced","0.43","0.612193024367","0.023094123268","0.00611180124224"]
["chr11",96636810,97850500,"Advanced","0.49","0.609606242121","0.057974441579","0.0279939688059"]
["chr11",100175000,100988200,"Advanced","0.48","0.725520167241","0.0435341859321","0.0626770782095"]
["chr11",106756400,107421200,"Advanced","0.45","0.696189831528","0.0231618531889","0.0192418772563"]
["chr12",105481400,106342300,"Advanced","0.48","0.347051922407","0.0273423161807","0.017297014752"]
["chr12",118166800,119024400,"Advanced","0.44","0.756978777985","0.020656483209","0.0199242070896"]
["chr14",94263170,97301230,"Advanced","0.36","0.14549021415","0.0145313127456","0.00756568336373"]
["chr17",26863980,28255840,"Advanced","0.50","0.554780653227","0.0734808098516","0.027426608998"]
["chr18",12606640,13149600,"Advanced","0.44","0.824294607338","0.0295970237218","0.00588993664358"]
["chr19",4788353,5948298,"Advanced","0.49","0.6057640664","0.0496333877899","0.0224002000095"]
["chr19",37819250,38460300,"Advanced","0.44","0.500449262928","0.0169581155916","0.0143452148818"]
["chr19",58628860,59580140,"Advanced","0.45","0.544699772938","0.0310413337819","0.0109273820537"]
["chr2",29548730,33278530,"Advanced","0.50","0.644949058931","0.0410898707706","0.0466770336211"]
["chr2",145457200,147005300,"Advanced","0.43","0.44172534074","0.0197939409599","0.0223984238744"]
["chr3",87805180,88334940,"Advanced","0.49","0.525611597705","0.052761627907","0.0571673965569"]
["chr4",100619900,101211200,"Advanced","0.44","0.669357348216","0.0203906646372","0.00354811432437"]
["chr4",132411400,133790700,"Advanced","0.49","0.554179656347","0.047057202929","0.0500674255057"]
["chr5",115222500,116017100,"Advanced","0.49","0.599718097156","0.0538082053864","0.0472892021143"]
["chr5",150064800,150553800,"Advanced","0.47","0.59236809816","0.0263762781186","0.0163476482618"]
["chr6",53223920,53980000,"Advanced","0.44","0.74397815046","0.0214818537721","0.0255118505978"]
["chr6",68020120,69757130,"Advanced","0.38","0.000137017058048","0.0201535972735","0.0"]
["chr6",92280090,93062100,"Advanced","0.43","0.812270942827","0.0217682638329","0.0126507333666"]
["chr8",82845920,83782460,"Advanced","0.42","0.310759818054","0.0236925278151","0.0247528135477"]
["chr9",9644565,11562100,"Advanced","0.38","0.648689593671","0.0122647044252","0.00151131530846"]
["chr9",116563400,117389700,"Advanced","0.43","1.0","0.00853927145105","0.0"]
["chrX",7078165,7857504,"Advanced","0.46","0.550833462716","0.0277414578252","0.00743707167228"]
["chrX",19882370,20962200,"Advanced","0.41","0.433895150163","0.0170980617319","0.000925145624774"]
["chrX",45142370,46051200,"Advanced","0.43","0.575479462606","0.0228337532872","0.0048391888472"]
["chrX",48836000,50328160,"Advanced","0.41","0.513245898563","0.00938974372721","0.0014060154407"]
["chrX",72290560,73033400,"Advanced","0.40","0.584145980292","0.0129866458457","0.00174869420064"]
["chrX",98479100,99033400,"Advanced","0.44","0.364867400325","0.0298556738228","0.0"]
["chrX",138509600,139234700,"Advanced","0.41","0.44829540753","0.013159564198","0.0"]
["chrX",157035900,157551900,"Advanced","0.40","0.628792635659","0.016507751938","0.00406589147287"]
["chr1",10235250,11385890,"Delayed","0.40","0.613089237294","0.0139113884447","0.0275351108948"]
["chr1",37176480,37598850,"Delayed","0.46","0.662118521675","0.0238534933826","0.0118284916069"]
["chr1",52288660,53195640,"Delayed","0.41","0.304987982094","0.0195935963307","0.0055083904827"]
["chr1",82445750,82992690,"Delayed","0.42","0.68035982009","0.0213588327787","0.00182652576151"]
["chr1",89910770,91306220,"Delayed","0.45","0.342254469884","0.0100720197786","0.0114579526318"]
["chr1",140379100,141340000,"Delayed","0.40","0.667551254033","0.0165906962223","0.00821625559371"]
["chr1",184231600,185375100,"Delayed","0.48","0.310648885002","0.0147739396589","0.0248255356362"]
["chr10",27231730,28447430,"Delayed","0.39","0.564992185572","0.0205075265279","0.00361602369006"]
["chr10",107399500,107832300,"Delayed","0.41","0.447365988909","0.0232070240296","0.00692467652495"]
["chr10",110016800,111145700,"Delayed","0.43","0.364188147754","0.0202099388786","0.0269129240854"]
["chr11",25608890,26104900,"Delayed","0.39","1.0","0.0128122416887","0.0"]
["chr11",77426660,78179700,"Delayed","0.47","0.70167321789","0.0538603527037","0.0311869223414"]
["chr12",113214000,113904400,"Delayed","0.51","0.369404692932","0.0284878331402","0.048348783314"]
["chr13",19228030,19915670,"Delayed","0.40","0.384686754697","0.0244866499913","0.0609112326217"]
["chr14",46886120,47725740,"Delayed","0.44","0.433722398228","0.0199173435602","0.0171422786499"]
["chr14",69824950,70471950,"Delayed","0.47","0.765027820711","0.0208392581144","0.108914992272"]
["chr14",77143590,78441430,"Delayed","0.42","0.620302194415","0.0182426185046","0.00515780065339"]
["chr15",12257910,12861290,"Delayed","0.45","0.632796910736","0.0208359574398","0.010267161656"]
["chr15",84996980,85804420,"Delayed","0.49","0.6193351828","0.0342576538195","0.0158426632319"]
["chr15",101240600,101710900,"Delayed","0.48","0.62372953434","0.00495428449926","0.00679991494791"]
["chr16",23867220,24508830,"Delayed","0.44","0.228336528421","0.0264662333816","0.0144854350774"]
["chr16",49929410,50715480,"Delayed","0.41","0.519491902757","0.026310633913","0.00737466128971"]
["chr17",40337110,41196600,"Delayed","0.38","0.235522228298","0.0225412744767","0.0238362284611"]
["chr17",42698720,43905510,"Delayed","0.43","0.510856901366","0.0183420479122","0.0151534235451"]
["chr17",86380900,87510790,"Delayed","0.46","0.721577321686","0.0157599412332","0.0518324792679"]
["chr18",7212041,8005901,"Delayed","0.40","0.535304713677","0.0235721663769","0.0115826468143"]
["chr18",8805044,9845990,"Delayed","0.41","0.271918043779","0.019363156206","0.0189116438317"]
["chr18",53062320,53782230,"Delayed","0.43","0.452701032073","0.0332027614563","0.00236001722438"]
["chr18",75777340,76784690,"Delayed","0.47","0.47505335782","0.0291904501911","0.063798084082"]
["chr19",56197280,56874650,"Delayed","0.46","0.37464310495","0.0270251118296","0.0295082451245"]
["chr2",51972010,52699380,"Delayed","0.42","0.737884432957","0.0172291955951","0.00618254808419"]
["chr2",60695730,61953300,"Delayed","0.40","0.285442559858","0.017726249831","0.00619846211344"]
["chr2",102910200,103924600,"Delayed","0.44","0.489612578864","0.0180224763407","0.0113288643533"]
["chr3",84390130,85335670,"Delayed","0.44","0.232772807073","0.018116631766","0.00930050553123"]
["chr3",103443500,104224100,"Delayed","0.42","0.584850115296","0.0151319497822","0.00883294901358"]
["chr3",128800000,129621900,"Delayed","0.44","0.468956077382","0.0251721620635","0.0100900352841"]
["chr3",137901100,138580300,"Delayed","0.44","0.473932567727","0.0203386336867","0.00294169611307"]
["chr3",143851100,146043500,"Delayed","0.43","0.520160554643","0.0180327494983","0.0134022076263"]
["chr3",152614500,153151700,"Delayed","0.44","0.59766381236","0.0199180938198","0.00874534623976"]
["chr4",58555260,59609740,"Delayed","0.42","0.423942606782","0.0171885668766","0.00701198695091"]
["chr4",104304300,104984400,"Delayed","0.44","0.692806940156","0.0179106013821","0.0145463902367"]
["chr4",108850000,109500600,"Delayed","0.41","0.641060559484","0.0241423301568","0.0"]
["chr6",4384251,5585131,"Delayed","0.41","0.486479082007","0.019566484578","0.0184731197122"]
["chr6",17214850,17831610,"Delayed","0.41","0.599941630456","0.0183961346391","0.00761560412478"]
["chr6",30753300,31729930,"Delayed","0.43","0.55717723191","0.0193594298762","0.0118693875879"]
["chr6",33682120,34554690,"Delayed","0.44","0.519551439999","0.0186621130683","0.0170633874646"]
["chr6",98790900,99670900,"Delayed","0.44","0.736403409091","0.0248511363636","0.0154454545455"]
["chr6",127336700,127844200,"Delayed","0.47","0.366813793103","0.0192886699507","0.0354502463054"]
["chr6",136175100,136692100,"Delayed","0.44","0.388477756286","0.0210212765957","0.00599226305609"]
["chr7",90860910,91625950,"Delayed","0.45","0.543297082505","0.021270783227","0.0114935166789"]
["chr7",114163600,114797800,"Delayed","0.42","0.472283191422","0.0202049826553","0.0275764742983"]
["chr7",119411700,121041500,"Delayed","0.45","0.565069947233","0.0226794698736","0.0163701067616"]
["chr7",137962900,138655900,"Delayed","0.44","0.570608946609","0.0183766233766","0.00201875901876"]
["chr7",145977200,146888100,"Delayed","0.49","0.717719837523","0.0183060709189","0.0314886376112"]
["chr8",24667720,25903190,"Delayed","0.43","0.517055047877","0.021303633435","0.00994925008296"]
["chr8",120695300,121519500,"Delayed","0.45","0.863855860228","0.023733317156","0.00788036884251"]
["chr9",14338530,14865230,"Delayed","0.46","0.49876020505","0.0254205430036","0.0132808050123"]
["chr9",55656210,56412780,"Delayed","0.42","0.698346484793","0.0170506364249","0.00950870375511"]
["chr9",120345300,121015300,"Delayed","0.48","0.373767164179","0.0239537313433","0.00656268656716"]