hCoV-19/Wales/PHWC-3122E/2020|EPI_ISL_446423|2020-04-10	95.83%	1	1
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           |||||||||||||||||||X||||
hit  22400 ACTTGACCCTCTCTCAGAAGCAAA  22423
hCoV-19/USA/WA-S597/2020|EPI_ISL_438150|2020-04-13	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||||||||X|||||||||||
hit  22438 ACTTGACCCTCTTTCAGAAACAAA  22461
hCoV-19/USA/VA-DCLS-0398/2020|EPI_ISL_467793|2020-04-20	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           X|||||||||||||||||||||||
hit  22426 TCTTGACCCTCTCTCAGAAACAAA  22449
hCoV-19/USA/VA-DCLS-0016/2020|EPI_ISL_419710|2020-03-12	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22421 ACTTGATCCTCTCTCAGAAACAAA  22444
hCoV-19/USA/UT-QDX-132/2020|EPI_ISL_467913|2020-03-13	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||||||||X|||||||||||
hit  22384 ACTTGACCCTCTTTCAGAAACAAA  22407
hCoV-19/USA/NY-PV08403/2020|EPI_ISL_421371|2020-03-17	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           |||||||||||||||||X||||||
hit  22379 ACTTGACCCTCTCTCAGGAACAAA  22402
hCoV-19/USA/NY-NYUMC186/2020|EPI_ISL_427482|2020-04-01	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           |||X||||||||||||||||||||
hit  22438 ACTCGACCCTCTCTCAGAAACAAA  22461
hCoV-19/USA/MI-MDHHS-SC20633/2020|EPI_ISL_462715|2020-04-17	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||||||||||||X|||||||
hit  22438 ACTTGACCCTCTCTCACAAACAAA  22461
hCoV-19/USA/MDH-7761/2020|EPI_ISL_454429|2020-03-12	95.83%	1	1
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||||||||||||||||||X|
hit  22432 ACTTGACCCTCTCTCAGAAACACA  22455
hCoV-19/USA/MA-MGH-00521/2020|EPI_ISL_460224|2020-03-16	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||||||||X|||||||||||
hit  22410 ACTTGACCCTCTTTCAGAAACAAA  22433
hCoV-19/USA/LA-EVTL026/2020|EPI_ISL_435564|2020-04-24	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||||||||X|||||||||||
hit  22438 ACTTGACCCTCTTTCAGAAACAAA  22461
hCoV-19/USA/IL-NM0125/2020|EPI_ISL_444607|2020-03-21	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||||||||X|||||||||||
hit  22438 ACTTGACCCTCTTTCAGAAACAAA  22461
hCoV-19/USA/FL-BPHL-048/2020|EPI_ISL_436552|2020-04-17	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22436 ACTTGATCCTCTCTCAGAAACAAA  22459
hCoV-19/USA/FL-BPHL-047/2020|EPI_ISL_436551|2020-04-17	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22436 ACTTGATCCTCTCTCAGAAACAAA  22459
hCoV-19/USA/FL-BPHL-046/2020|EPI_ISL_436550|2020-04-17	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22435 ACTTGATCCTCTCTCAGAAACAAA  22458
hCoV-19/USA/FL-BPHL-020/2020|EPI_ISL_436524|2020-04-15	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22435 ACTTGATCCTCTCTCAGAAACAAA  22458
hCoV-19/USA/FL-BPHL-017/2020|EPI_ISL_436521|2020-04-08	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22406 ACTTGATCCTCTCTCAGAAACAAA  22429
hCoV-19/USA/FL-BPHL-0106/2020|EPI_ISL_445048|2020-04-29	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22435 ACTTGATCCTCTCTCAGAAACAAA  22458
hCoV-19/USA/FL-BPHL-0104/2020|EPI_ISL_445046|2020-04-28	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22405 ACTTGATCCTCTCTCAGAAACAAA  22428
hCoV-19/USA/FL-BPHL-0076/2020|EPI_ISL_445019|2020-04-29	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22409 ACTTGATCCTCTCTCAGAAACAAA  22432
hCoV-19/USA/FL-BPHL-0070/2020|EPI_ISL_445013|2020-04-17	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22409 ACTTGATCCTCTCTCAGAAACAAA  22432
hCoV-19/USA/FL-BPHL-0061/2020|EPI_ISL_445004|2020-04-15	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22405 ACTTGATCCTCTCTCAGAAACAAA  22428
hCoV-19/USA/FL-BPHL-0060/2020|EPI_ISL_445003|2020-04-15	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22405 ACTTGATCCTCTCTCAGAAACAAA  22428
hCoV-19/Turkey/HSGM-8975/2020|EPI_ISL_429863|2020-03-22	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22173 ACTTGATCCTCTCTCAGAAACAAA  22196
hCoV-19/Turkey/HSGM-8968/2020|EPI_ISL_429861|2020-03-22	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22173 ACTTGATCCTCTCTCAGAAACAAA  22196
hCoV-19/Turkey/HSGM-8964/2020|EPI_ISL_428723|2020-03-22	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22173 ACTTGATCCTCTCTCAGAAACAAA  22196
hCoV-19/Turkey/HSGM-5711/2020|EPI_ISL_428716|2020-03-18	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22173 ACTTGATCCTCTCTCAGAAACAAA  22196
hCoV-19/Turkey/HSGM-4701/2020|EPI_ISL_429869|2020-03-17	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22173 ACTTGATCCTCTCTCAGAAACAAA  22196
hCoV-19/Turkey/HSGM-1432/2020|EPI_ISL_437326|2020-03-19	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22432 ACTTGATCCTCTCTCAGAAACAAA  22455
hCoV-19/Turkey/HSGM-1081/2020|EPI_ISL_437310|2020-03-27	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22432 ACTTGATCCTCTCTCAGAAACAAA  22455
hCoV-19/Thailand/Bangkok-0069/2020|EPI_ISL_447011|2020-03-29	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           |||||||||X||||||||||||||
hit  22384 ACTTGACCCGCTCTCAGAAACAAA  22407
hCoV-19/Scotland/EDB5276/2020|EPI_ISL_456997|2020-05-19	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||||||||X|||||||||||
hit  22438 ACTTGACCCTCTTTCAGAAACAAA  22461
hCoV-19/Scotland/EDB2678/2020|EPI_ISL_439261|2020-04-26	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/Scotland/EDB1706/2020|EPI_ISL_433124|2020-04-15	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||||||||X|||||||||||
hit  22438 ACTTGACCCTCTTTCAGAAACAAA  22461
hCoV-19/Saudi_Arabia/KAUST-Makkah236/2020|EPI_ISL_437731|2020-04-16	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/Saudi_Arabia/KAUST-Makkah233/2020|EPI_ISL_437729|2020-04-16	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/Saudi_Arabia/KAUST-Makkah227/2020|EPI_ISL_437723|2020-04-16	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/Saudi_Arabia/KAUST-Makkah196/2020|EPI_ISL_437710|2020-04-14	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/Saudi_Arabia/KAUST-Makkah189/2020|EPI_ISL_437706|2020-04-14	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/Saudi_Arabia/KAUST-Madinah265/2020|EPI_ISL_437748|2020-04-20	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/Saudi_Arabia/KAUST-Madinah255/2020|EPI_ISL_437739|2020-04-20	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/Saudi_Arabia/KAUST-Madinah252/2020|EPI_ISL_437736|2020-04-20	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/Saudi_Arabia/KAUST-Madinah208/2020|EPI_ISL_437715|2020-04-14	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/Russia/Kipen-RII6907V/2020|EPI_ISL_450246|2020-04-19	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||||||||X|||||||||||
hit  22438 ACTTGACCCTCTTTCAGAAACAAA  22461
hCoV-19/Portugal/PT0218/2020|EPI_ISL_453932|2020-03-30	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||||||||X|||||||||||
hit  22288 ACTTGACCCTCTTTCAGAAACAAA  22311
hCoV-19/Portugal/PT0217/2020|EPI_ISL_453931|2020-03-30	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||||||||X|||||||||||
hit  22288 ACTTGACCCTCTTTCAGAAACAAA  22311
hCoV-19/Netherlands/ZuidHolland_113/2020|EPI_ISL_455302|2020-04-07	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22384 ACTTGATCCTCTCTCAGAAACAAA  22407
hCoV-19/Malaysia/IIUM91/2020|EPI_ISL_455313|2020-04-02	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22384 ACTTGATCCTCTCTCAGAAACAAA  22407
hCoV-19/India/NCDC-02157/2020|EPI_ISL_435073|2020-03-26	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           |0||||X|||||||||||||||||
hit  22438 ANTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/India/NCDC-01757/2020|EPI_ISL_435068|2020-03-18	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/India/NCDC-01744/2020|EPI_ISL_435069|2020-03-18	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/India/NCDC-01711/2020|EPI_ISL_435066|2020-03-18	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/India/NCDC-01475/2020|EPI_ISL_435065|2020-03-15	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/India/ILSCV18539/2020|EPI_ISL_463062|2020-05-13	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/India/ILSCV18534/2020|EPI_ISL_463061|2020-05-13	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/India/ILSCV18525/2020|EPI_ISL_463060|2020-05-13	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/India/GBRC95b/2020|EPI_ISL_450783|2020-04-11	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/India/GBRC91/2020|EPI_ISL_447553|2020-04-27	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/India/GBRC87/2020|EPI_ISL_447548|2020-04-28	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/India/GBRC85/2020|EPI_ISL_447546|2020-05-05	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/India/GBRC8/2020|EPI_ISL_435055|2020-04-22	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/India/GBRC73/2020|EPI_ISL_447051|2020-04-29	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/India/GBRC72b/2020|EPI_ISL_447050|2020-04-29	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/India/GBRC72a/2020|EPI_ISL_447049|2020-04-29	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/India/GBRC71/2020|EPI_ISL_447048|2020-04-27	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/India/GBRC69/2020|EPI_ISL_447046|2020-05-04	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/India/GBRC68/2020|EPI_ISL_447045|2020-05-03	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/India/GBRC67b/2020|EPI_ISL_447044|2020-05-03	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/India/GBRC67a/2020|EPI_ISL_447043|2020-05-03	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/India/GBRC65b/2020|EPI_ISL_447041|2020-05-03	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/India/GBRC65a/2020|EPI_ISL_447040|2020-05-03	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/India/GBRC64/2020|EPI_ISL_447039|2020-05-03	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/India/GBRC60/2020|EPI_ISL_447035|2020-05-03	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/India/GBRC59/2020|EPI_ISL_447034|2020-05-03	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/India/GBRC58/2020|EPI_ISL_447033|2020-05-03	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/India/GBRC55/2020|EPI_ISL_444486|2020-05-04	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/India/GBRC45/2020|EPI_ISL_444476|2020-04-29	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/India/GBRC41/2020|EPI_ISL_444472|2020-04-29	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/India/GBRC38/2020|EPI_ISL_444469|2020-04-29	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/India/GBRC35/2020|EPI_ISL_444466|2020-04-29	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/India/GBRC34/2020|EPI_ISL_444465|2020-04-29	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/India/GBRC33/2020|EPI_ISL_444464|2020-04-29	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/India/GBRC30/2020|EPI_ISL_444461|2020-04-29	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/India/GBRC28/2020|EPI_ISL_444459|2020-04-30	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/India/GBRC24b/2020|EPI_ISL_437454|2020-04-26	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/India/GBRC23/2020|EPI_ISL_437452|2020-04-26	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/India/GBRC183b/2020|EPI_ISL_467054|2020-06-03	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/India/GBRC183a/2020|EPI_ISL_467053|2020-06-03	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/India/GBRC182a/2020|EPI_ISL_467051|2020-06-03	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/India/GBRC181b/2020|EPI_ISL_467050|2020-06-03	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/India/GBRC181a/2020|EPI_ISL_467049|2020-06-03	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/India/GBRC17b/2020|EPI_ISL_437446|2020-04-26	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/India/GBRC17a/2020|EPI_ISL_437445|2020-04-26	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/India/GBRC179b/2020|EPI_ISL_467046|2020-06-03	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/India/GBRC179a/2020|EPI_ISL_467045|2020-06-03	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/India/GBRC177b/2020|EPI_ISL_467042|2020-06-03	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/India/GBRC177a/2020|EPI_ISL_467041|2020-06-03	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/India/GBRC174b/2020|EPI_ISL_467038|2020-06-05	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/India/GBRC172/2020|EPI_ISL_467034|2020-06-05	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/India/GBRC167a/2020|EPI_ISL_461503|2020-05-27	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/India/GBRC166b/2020|EPI_ISL_461502|2020-05-27	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/India/GBRC166a/2020|EPI_ISL_461501|2020-05-27	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/India/GBRC165/2020|EPI_ISL_461500|2020-05-27	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/India/GBRC164/2020|EPI_ISL_461499|2020-05-27	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/India/GBRC162a/2020|EPI_ISL_461495|2020-05-27	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/India/GBRC160a/2020|EPI_ISL_461491|2020-05-27	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/India/GBRC159b/2020|EPI_ISL_461490|2020-05-27	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/India/GBRC159a/2020|EPI_ISL_461489|2020-05-27	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/India/GBRC158/2020|EPI_ISL_461488|2020-05-27	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/India/GBRC156/2020|EPI_ISL_461485|2020-05-27	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/India/GBRC155/2020|EPI_ISL_461484|2020-05-27	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/India/GBRC150b/2020|EPI_ISL_458113|2020-05-18	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/India/GBRC150a/2020|EPI_ISL_458112|2020-05-18	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/India/GBRC143/2020|EPI_ISL_458103|2020-05-05	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/India/GBRC141a/2020|EPI_ISL_458100|2020-05-24	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/India/GBRC140/2020|EPI_ISL_458099|2020-05-24	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/India/GBRC139b/2020|EPI_ISL_458098|2020-05-24	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/India/GBRC139a/2020|EPI_ISL_458097|2020-05-24	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/India/GBRC137b/2020|EPI_ISL_458095|2020-05-24	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/India/GBRC137a/2020|EPI_ISL_458094|2020-05-24	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/India/GBRC136b/2020|EPI_ISL_458093|2020-05-24	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/India/GBRC136a/2020|EPI_ISL_458092|2020-05-24	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/India/GBRC135b/2020|EPI_ISL_458091|2020-05-24	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/India/GBRC135a/2020|EPI_ISL_458090|2020-05-24	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/India/GBRC133/2020|EPI_ISL_458088|2020-05-24	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/India/GBRC131/2020|EPI_ISL_458086|2020-05-24	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/India/GBRC117/2020|EPI_ISL_451162|2020-05-03	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/India/GBRC108/2020|EPI_ISL_451153|2020-05-10	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/India/GBRC107/2020|EPI_ISL_451152|2020-05-09	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/India/GBRC106/2020|EPI_ISL_451151|2020-05-05	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/India/GBRC104/2020|EPI_ISL_451149|2020-05-07	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/Germany/NRW-39/2020|EPI_ISL_425123|2020-03-17	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           |||||||||X||||||||||||||
hit  22438 ACTTGACCCCCTCTCAGAAACAAA  22461
hCoV-19/France/OCC-19/2020|EPI_ISL_434634|2020-04-11	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           |||||||||||X||||||||||||
hit  22438 ACTTGACCCTCACTCAGAAACAAA  22461
hCoV-19/England/NOTT-110C44/2020|EPI_ISL_448397|2020-05-01	95.83%	1	1
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||||||||||||||||X|||
hit  22438 ACTTGACCCTCTCTCAGAAATAAA  22461
hCoV-19/England/NORW-EABED/2020|EPI_ISL_457361|2020-05-09	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||||||||X|||||||||||
hit  22406 ACTTGACCCTCTTTCAGAAACAAA  22429
hCoV-19/England/LIVE-99BB0/2020|EPI_ISL_439805|2020-04-12	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/England/CAMB-7606F/2020|EPI_ISL_438529|2020-03-30	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           |||X||||||||||||||||||||
hit  22381 ACTCGACCCTCTCTCAGAAACAAA  22404
hCoV-19/England/CAMB-1AF07B/2020|EPI_ISL_459288|2020-04-29	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||||||||X|||||||||||
hit  22384 ACTTGACCCTCTTTCAGAAACAAA  22407
hCoV-19/England/CAMB-1AE71D/2020|EPI_ISL_459452|2020-04-29	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||||||||X|||||||||||
hit  22384 ACTTGACCCTCTTTCAGAAACAAA  22407
hCoV-19/England/BRIS-12674A/2020|EPI_ISL_459024|2020-04-10	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||||||||X|||||||||||
hit  22384 ACTTGACCCTCTTTCAGAAACAAA  22407
hCoV-19/England/20156050304/2020|EPI_ISL_466336|2020-04-03	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           |||||||X||||||||||||||||
hit  22435 ACTTGACTCTCTCTCAGAAACAAA  22458
hCoV-19/England/20124095702/2020|EPI_ISL_418730|2020-03-18	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||||||||X|||||||||||
hit  22438 ACTTGACCCTCTTTCAGAAACAAA  22461
hCoV-19/England/201160912/2020|EPI_ISL_464807|2020-03-09	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/England/201060144/2020|EPI_ISL_464397|2020-03-04	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||||||||||X|||||||||
hit  22438 ACTTGACCCTCTCTTAGAAACAAA  22461
hCoV-19/Canada/ON_PHL5757/2020|EPI_ISL_418359|2020-03-12	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22437 ACTTGATCCTCTCTCAGAAACAAA  22460
hCoV-19/Canada/ON_PHL5756/2020|EPI_ISL_418358|2020-03-12	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22437 ACTTGATCCTCTCTCAGAAACAAA  22460
hCoV-19/Belgium/ULG-10186/2020|EPI_ISL_455974|2020-5-11	95.83%	1	1
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||||||||||||||||X|||
hit  22438 ACTTGACCCTCTCTCAGAAATAAA  22461
hCoV-19/Bangladesh/CHRF_0006/2020|EPI_ISL_468074|2020-05-17	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22436 ACTTGATCCTCTCTCAGAAACAAA  22459
hCoV-19/Bangladesh/BCSIR-NILMRC_071/2020|EPI_ISL_466692|2020-05-26	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/Bangladesh/BCSIR-NILMRC_070/2020|EPI_ISL_466639|2020-05-26	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/Bangladesh/BCSIR-NILMRC_069/2020|EPI_ISL_466638|2020-05-26	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/Bangladesh/BCSIR-NILMRC_067/2020|EPI_ISL_466637|2020-05-26	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22438 ACTTGATCCTCTCTCAGAAACAAA  22461
hCoV-19/Bangladesh/BARJ_CVASU_CTG_517/2020|EPI_ISL_450344|2020-05-03	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22424 ACTTGATCCTCTCTCAGAAACAAA  22447
hCoV-19/Bangladesh/BARJ_CVASU_CTG_511/2020|EPI_ISL_450343|2020-05-09	95.83%	1	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||||||
hit  22430 ACTTGATCCTCTCTCAGAAACAAA  22453
hCoV-19/India/NCDC-01712/2020|EPI_ISL_435067|2020-03-18	91.67%	2	1
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           ||||||X|||||||||||||X|||
hit  22438 ACTTGATCCTCTCTCAGAAATAAA  22461
hCoV-19/USA/WA-UW-6408/2020|EPI_ISL_430978|2020-04-03	87.50%	3	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           |X||||XX||||||||||||||||
hit  22364 AGTTGAATCTCTCTCAGAAACAAA  22387
hCoV-19/USA/ID-UW-4100/2020|EPI_ISL_427168|2020-03-29	87.50%	3	0
fwd      1 ACTTGACCCTCTCTCAGAAACAAA     24
           |X||||XX||||||||||||||||
hit  22383 AGTTGAATCTCTCTCAGAAACAAA  22406

--> 40851 of 41008 covered (99.62%)
--> 157 of 41008 missed (0.38%) with at least 1 mismatch (157 fwd)
--> 5 of 41008 missed (0.01%) with at least 1 mismatch in 3' region (5 fwd)
--> 0 of 41008 missed (0.00%) with at least 2 mismatches in 3' region (0 fwd)
