# Open reading frames searched for novel coding regions # # Notes: # - Includes all ORFs at least 10 codons long, on either strand, beginning with AUG or a # near-cognate codon, that do not overlap an NCBI-annotated gene in the same reading # frame or the antisense frame (the frame on the opposite strand that shares the 3rd # codon position; antisense regions gets artifactually high PhyloCSF scores). # - "initial subset" consisted of those on the '+' strand, with a canonical (AUG) start # codon, at least 25 codons long, that are maximal (i.e, not contained in a longer # AUG-initiated ORF in the same frame). # - ORFs in initial subset are listed first, then the others, with each group in order of # decreasing PhyloCSF score per codon. # - CodAlignView and UCSCView links show ORF with 10 codons of context on each # side in CodAlignView (color-coded alignment) and UCSC Genome Browser. # - Other fields report relative branch length of strains conserving the start codon/stop # codon/reading frame, GC content, fraction of the ORF that overlaps Synonymous # Constraint Elements, and whether the ORF was reported as translated in the Finkel # et al. ribosome profiling experiments. # Intervals Strand Start End NumCodons IsMaximal StartCodon ORFtype OverlapsGenes InInitialSubset SubsetRank CodAlignView UCSCview ScorePerCodon RelBL SubsPerSite ScoreOverSubsPerSite AntiScorePerCodon ScoreDiff ATGRelBL StopRelBL FrameRelBL ORFRelBL NearCognateRelBL NearCognateORFRelBL GC CpGratio SCEfrac RiboSeqSupport NC_045512.2:25457-25579 + 25457 25579 41 Maximal AUG Canonical ORF3a InInitialSubset 1 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25456;123;0&p=30&e=30&w=0&f=25457-25579", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25457-25579&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -1.20556829268 1.0 1.10569105691 -1.09033014706 -2.75829512195 1.55272682927 0.994989418851 0.0174377340062 0.0174377340062 0.0174377340062 1.0 0.0174377340062 0.463414634146 1.1010230179 0.918699186992 3a.iORF1 NC_045512.2:26183-26278 + 26183 26278 32 Maximal AUG Canonical ORF3a,E InInitialSubset 2 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26182;96;0&p=30&e=30&w=0&f=26183-26278", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26183-26278&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -2.73891875 0.9969 0.34807863212 -7.86867821594 -4.45655625 1.7176375 0.884951977861 1.0 0.694777795865 0.667618427478 1.0 0.694777795865 0.458333333333 1.6 0.364583333333 NC_045512.2:28284-28574 + 28284 28574 97 Maximal AUG Canonical N InInitialSubset 3 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28283;291;0&p=30&e=30&w=0&f=28284-28574", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28284-28574&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -5.90602989691 0.997 0.948453608247 -6.22700978261 -4.12322783505 -1.78280206186 1.0 1.0 1.0 1.0 1.0 1.0 0.498281786942 0.890929965557 0.247422680412 N.iORF1 NC_045512.2:3207-3299 + 3207 3299 31 Maximal AUG Canonical orf1ab InInitialSubset 4 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3206;93;0&p=30&e=30&w=0&f=3207-3299", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3207-3299&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -7.76634516129 0.3747 5.14024975028 -1.51088868024 -8.41795483871 0.65160967742 0.500592544359 0.0174377340062 0.509689076998 0.0174377340062 0.662773888979 0.0174377340062 0.387096774194 0.287037037037 0.0 NC_045512.2:28734-28952 + 28734 28952 73 Maximal AUG Canonical N InInitialSubset 5 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28733;219;0&p=30&e=30&w=0&f=28734-28952", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28734-28952&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -7.83966164384 0.9988 0.965230271664 -8.12206358834 -8.22804657534 0.388384931502 0.890405339411 0.979550708123 0.0174377340062 0.0174377340062 1.0 0.0174377340062 0.511415525114 0.488995215311 0.0 NC_045512.2:12864-12938 + 12864 12938 25 Maximal AUG Canonical orf1ab InInitialSubset 6 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12863;75;0&p=30&e=30&w=0&f=12864-12938", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12864-12938&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -8.16352 1.0 0.666666666667 -12.24528 -5.571668 -2.591852 0.943330620218 1.0 1.0 0.943330620218 1.0 1.0 0.413333333333 0.0 0.733333333333 NC_045512.2:14651-14749 + 14651 14749 33 Maximal AUG Canonical orf1ab InInitialSubset 7 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14650;99;0&p=30&e=30&w=0&f=14651-14749", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14651-14749&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -8.58593939394 1.0 0.555555555556 -15.4546909091 -5.89537878788 -2.69056060606 0.657118671659 1.0 0.890405339411 0.657118671659 1.0 0.890405339411 0.353535353535 0.33 0.909090909091 NC_045512.2:26072-26167 + 26072 26167 32 Maximal AUG Canonical ORF3a InInitialSubset 8 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26071;96;0&p=30&e=30&w=0&f=26072-26167", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26072-26167&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -8.807859375 0.968 1.35864221128 -6.48283948626 -10.332490625 1.52463125 0.828412827609 0.288383525965 0.307354712681 0.0 1.0 0.0 0.385416666667 0.857142857143 0.90625 NC_045512.2:14774-14854 + 14774 14854 27 Maximal AUG Canonical orf1ab InInitialSubset 9 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14773;81;0&p=30&e=30&w=0&f=14774-14854", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14774-14854&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -8.8864037037 1.0 0.543209876543 -16.3590613636 -6.41762962963 -2.46877407407 1.0 0.912111346248 1.0 0.912111346248 1.0 0.912111346248 0.345679012346 0.830769230769 0.691358024691 NC_045512.2:13311-13463 + 13311 13463 51 Maximal AUG Canonical orf1ab InInitialSubset 10 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13310;153;0&p=30&e=30&w=0&f=13311-13463", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13311-13463&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -9.40834313725 1.0 0.745098039216 -12.6269868421 -6.80612745098 -2.60221568627 0.791955070812 1.0 0.0174377340062 0.0174377340062 0.978368875142 0.0174377340062 0.437908496732 0.681818181818 0.967320261438 NC_045512.2:12690-12770 + 12690 12770 27 Maximal AUG Canonical orf1ab InInitialSubset 11 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12689;81;0&p=30&e=30&w=0&f=12690-12770", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12690-12770&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -10.0079333333 1.0 0.83950617284 -11.9212147058 -13.4546407407 3.44670740744 1.0 0.0174377340062 0.364759889305 0.0174377340062 1.0 0.0174377340062 0.481481481481 0.639473684211 0.0 NC_045512.2:15812-15895 + 15812 15895 28 Maximal AUG Canonical orf1ab InInitialSubset 12 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15811;84;0&p=30&e=30&w=0&f=15812-15895", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15812-15895&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -10.0606964286 1.0 0.690476190476 -14.5706637931 -8.71693214286 -1.34376428574 0.990900211623 1.0 1.0 0.990900211623 1.0 1.0 0.369047619048 0.0 0.0 NC_045512.2:16682-16795 + 16682 16795 38 Maximal AUG Canonical orf1ab InInitialSubset 13 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16681;114;0&p=30&e=30&w=0&f=16682-16795", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16682-16795&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -10.6312605263 1.0 0.929824561404 -11.4336198113 -9.38255263158 -1.24870789472 0.987712843887 0.912111346248 0.0174377340062 0.0174377340062 1.0 0.0174377340062 0.40350877193 0.651428571429 0.236842105263 NC_045512.2:594-683 + 594 683 30 Maximal AUG Canonical orf1ab InInitialSubset 14 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;593;90;0&p=30&e=30&w=0&f=594-683", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:594-683&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -11.20712 1.0 0.988888888889 -11.3330426966 -7.44223666667 -3.76488333333 0.890405339411 1.0 0.994989418851 0.885394758261 0.890405339411 0.885394758261 0.511111111111 1.22807017544 0.711111111111 NC_045512.2:26693-26869 + 26693 26869 59 Maximal AUG Canonical M InInitialSubset 15 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26692;177;0&p=30&e=30&w=0&f=26693-26869", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26693-26869&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -12.3690661017 1.0 0.960451977401 -12.8783805882 -13.9360610169 1.56699491525 0.469132345759 0.274540126974 0.0174377340062 0.0 1.0 0.0174377340062 0.446327683616 0.683397683398 0.152542372881 NC_045512.2:20168-20260 + 20168 20260 31 Maximal AUG Canonical orf1ab InInitialSubset 16 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20167;93;0&p=30&e=30&w=0&f=20168-20260", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20168-20260&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -12.6088193548 1.0 1.4623655914 -8.62220735291 -10.9024709677 -1.70634838706 0.896386130555 0.364759889305 0.279524662217 0.0 1.0 0.0 0.322580645161 0.0 0.0 NC_045512.2:14348-14425 + 14348 14425 26 Maximal AUG Canonical orf1ab InInitialSubset 17 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14347;78;0&p=30&e=30&w=0&f=14348-14425", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14348-14425&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.208 1.0 0.897435897436 -14.7174857143 -10.2515307692 -2.95646923077 0.923949210483 0.706439850236 1.0 0.63038906072 1.0 0.706439850236 0.384615384615 0.0 0.0 NC_045512.2:16493-16600 + 16493 16600 36 Maximal AUG Canonical orf1ab InInitialSubset 18 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16492;108;0&p=30&e=30&w=0&f=16493-16600", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16493-16600&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.9300555556 1.0 0.935185185185 -14.8955049505 -9.20798888889 -4.72206666671 1.0 0.0174377340062 0.0174377340062 0.0174377340062 1.0 0.0174377340062 0.324074074074 0.391304347826 0.157407407407 NC_045512.2:12126-12203 + 12126 12203 26 Maximal AUG Canonical orf1ab InInitialSubset 19 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12125;78;0&p=30&e=30&w=0&f=12126-12203", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12126-12203&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.9575846154 1.0 1.14102564103 -12.2324898877 -10.1992461538 -3.75833846155 0.972082044604 1.0 0.408689565359 0.408689565359 1.0 0.408689565359 0.397435897436 0.0 0.0512820512821 NC_045512.2:6156-6347 + 6156 6347 64 Maximal AUG Canonical orf1ab InInitialSubset 20 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6155;192;0&p=30&e=30&w=0&f=6156-6347", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6156-6347&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.48103125 0.9813 1.10928638752 -13.0543666748 -10.424684375 -4.056346875 0.981299039557 0.363337131695 0.479023278528 0.343053882468 0.981299039557 0.343053882468 0.354166666667 0.498269896194 0.390625 NC_045512.2:9981-10112 + 9981 10112 44 Maximal AUG Canonical orf1ab InInitialSubset 21 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9980;132;0&p=30&e=30&w=0&f=9981-10112", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9981-10112&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.0725386364 1.0 1.15151515152 -13.0893098685 -15.0429545455 -0.0295840909455 0.984346410549 0.539195832655 0.890405339411 0.523542243204 1.0 0.539195832655 0.416666666667 0.0 0.204545454545 NC_045512.2:7281-7364 + 7281 7364 28 Maximal AUG Canonical orf1ab InInitialSubset 22 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7280;84;0&p=30&e=30&w=0&f=7281-7364", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7281-7364&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.087725 1.0 1.15476190476 -13.0656587629 -11.9891785714 -3.09854642857 0.390053719681 0.390053719681 0.094488035162 0.094488035162 0.863981767866 0.094488035162 0.333333333333 0.0 0.321428571429 NC_045512.2:15461-15664 + 15461 15664 68 Maximal AUG Canonical orf1ab InInitialSubset 23 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15460;204;0&p=30&e=30&w=0&f=15461-15664", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15461-15664&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.5873838235 1.0 1.08333333333 -14.3883542986 -11.4449941176 -4.14238970585 0.997854468501 0.434351294156 0.0174377340062 0.0174377340062 1.0 0.0174377340062 0.377450980392 0.412955465587 0.00980392156863 NC_045512.2:7548-7706 + 7548 7706 53 Maximal AUG Canonical orf1ab InInitialSubset 24 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7547;159;0&p=30&e=30&w=0&f=7548-7706", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7548-7706&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.6789339623 1.0 1.21383647799 -12.9168419689 -11.8272641509 -3.85166981136 0.912111346248 0.390053719681 0.094488035162 0.094488035162 1.0 0.094488035162 0.358490566038 0.214864864865 0.0 NC_045512.2:966-1094 + 966 1094 43 Maximal AUG Canonical orf1ab InInitialSubset 25 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;965;129;0&p=30&e=30&w=0&f=966-1094", "CodAlignView") 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0.974706169624 0.706439850236 0.0174377340062 0.0174377340062 1.0 0.0174377340062 0.348484848485 0.25 0.0 NC_045512.2:23403-23510 + 23403 23510 36 Maximal AUG Canonical S InInitialSubset 55 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23402;108;0&p=30&e=30&w=0&f=23403-23510", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23403-23510&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -22.9747 1.0 2.87962962963 -7.97835241158 -24.0830166667 1.10831666667 0.890405339411 0.460371154159 0.445095230343 0.343053882468 1.0 0.343053882468 0.407407407407 0.45 0.0 NC_045512.2:21317-21397 + 21317 21397 27 Maximal AUG Canonical orf1ab InInitialSubset 56 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21316;81;0&p=30&e=30&w=0&f=21317-21397", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21317-21397&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -23.1101814815 1.0 1.44444444444 -15.9993564103 -12.4554296296 -10.6547518519 0.60974116881 1.0 1.0 0.60974116881 1.0 1.0 0.308641975309 0.0 0.0 NC_045512.2:24762-24872 + 24762 24872 37 Maximal AUG Canonical S InInitialSubset 57 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24761;111;0&p=30&e=30&w=0&f=24762-24872", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24762-24872&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -23.1509324324 1.0 1.73873873874 -13.3147849741 -14.1931243243 -8.95780810808 0.953166205437 0.085388246785 0.890405339411 0.0 0.974706169624 0.0 0.441441441441 0.186868686869 0.630630630631 NC_045512.2:7758-7835 + 7758 7835 26 Maximal AUG Canonical orf1ab InInitialSubset 58 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7757;78;0&p=30&e=30&w=0&f=7758-7835", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7758-7835&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -24.2355192308 1.0 1.79487179487 -13.5026464286 -17.0626115385 -7.17290769234 0.90371479733 0.855441966466 0.890405339411 0.567764935699 1.0 0.649770470454 0.333333333333 0.0 0.0 NC_045512.2:22614-22721 + 22614 22721 36 Maximal AUG Canonical S InInitialSubset 59 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22613;108;0&p=30&e=30&w=0&f=22614-22721", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22614-22721&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -25.6505333333 1.0 2.25 -11.400237037 -23.4215444444 -2.22898888886 0.889490476966 0.706439850236 1.0 0.683818980954 1.0 0.706439850236 0.37037037037 0.27 0.0 NC_045512.2:28081-28188 + 28081 28188 36 Maximal AUG Canonical ORF8 InInitialSubset 60 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28080;108;0&p=30&e=30&w=0&f=28081-28188", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28081-28188&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -26.5690361111 0.6947 6.18284609998 -4.29721776694 -20.1200472222 -6.44898888888 0.0883998046557 0.465492430409 0.552593195507 0.0174377340062 0.45096207065 0.0174377340062 0.37037037037 0.541353383459 0.0 NC_045512.2:22776-22862 + 22776 22862 29 Maximal AUG Canonical S InInitialSubset 61 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22775;87;0&p=30&e=30&w=0&f=22776-22862", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22776-22862&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -26.7180482759 1.0 2.54022988506 -10.5179647059 -24.3460793103 -2.37196896556 0.622855282435 0.844873840143 0.329734657334 0.0174377340062 0.754344782679 0.254650822074 0.367816091954 0.690476190476 0.0 NC_045512.2:25524-25694 + 25524 25694 57 Maximal AUG Canonical ORF3a InInitialSubset 62 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25523;171;0&p=30&e=30&w=0&f=25524-25694", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25524-25694&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -27.4758526316 1.0 2.27485380117 -12.078074036 -32.5919210526 5.11606842103 1.0 0.445765912421 0.0 0.0 1.0 0.0 0.438596491228 0.366428571429 0.286549707602 NC_045512.2:23118-23198 + 23118 23198 27 Maximal AUG Canonical S InInitialSubset 63 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23117;81;0&p=30&e=30&w=0&f=23118-23198", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23118-23198&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -28.8618481481 1.0 2.45679012346 -11.7477874372 -23.8578555556 -5.00399259254 0.866713332248 0.364759889305 0.536662868305 0.0174377340062 1.0 0.0174377340062 0.333333333333 0.0 0.0 NC_045512.2:1866-1964 + 1866 1964 33 Maximal AUG Canonical orf1ab InInitialSubset 64 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1865;99;0&p=30&e=30&w=0&f=1866-1964", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1866-1964&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -28.9090969697 1.0 2.32323232323 -12.4434808696 -19.4898060606 -9.41929090909 0.288995604753 0.548012371805 0.807654240599 0.0894774540127 0.964632915514 0.385043138532 0.454545454545 0.982142857143 0.0 NC_045512.2:23004-23090 + 23004 23090 29 Maximal AUG Canonical S InInitialSubset 65 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23003;87;0&p=30&e=30&w=0&f=23004-23090", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23004-23090&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -30.0689517241 0.8827 4.97801768155 -6.04034650893 -24.9137931034 -5.15515862065 0.0174377340062 0.331828097021 0.73116392642 0.0 0.0174377340062 0.0 0.367816091954 0.0 0.0 NC_045512.2:21936-22196 + 21936 22196 87 Maximal AUG Canonical S InInitialSubset 66 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21935;261;0&p=30&e=30&w=0&f=21936-22196", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21936-22196&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -33.4904885057 0.939 5.37059005985 -6.23590483214 -23.7114735632 -9.77901494248 0.338456780075 0.410525801726 0.307104020837 0.0174377340062 0.399133973629 0.0174377340062 0.298850574713 0.358270418668 0.0 NC_045512.2:21744-21860 + 21744 21860 39 Maximal AUG Canonical S InInitialSubset 67 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21743;117;0&p=30&e=30&w=0&f=21744-21860", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21744-21860&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -37.7836205128 0.9518 5.49672028512 -6.87384814088 -28.9303794872 -8.85324102562 0.372586684031 0.445668240273 0.395979163275 0.0 0.800452547615 0.255018720495 0.393162393162 0.0 0.0 S.iORF1 NC_045512.2:25513-25563 - 25513 25563 17 NotMaximal CUG NearCognate ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25512;51;0&s=-&p=30&e=30&w=0&f=25513-25563-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25513-25563&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") 5.27415294118 1.0 0.862745098039 6.11322272728 0.639717647059 4.63443529412 NA 0.605215692658 0.912111346248 NA 1.0 0.605215692658 0.470588235294 0.708333333333 1.0 NC_045512.2:25513-25551 - 25513 25551 13 NotMaximal AAG NearCognate ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25512;39;0&s=-&p=30&e=30&w=0&f=25513-25551-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25513-25551&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") 5.09683846154 1.0 0.897435897436 5.67933428572 1.54193076923 3.55490769231 NA 0.605215692658 0.912111346248 NA 0.975494058278 0.580709750936 0.487179487179 0.866666666667 1.0 NC_045512.2:25513-25548 - 25513 25548 12 NotMaximal AAG NearCognate ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25512;36;0&s=-&p=30&e=30&w=0&f=25513-25548-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25513-25548&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") 4.926375 1.0 0.944444444444 5.21616176471 1.868625 3.05775 NA 0.605215692658 0.912111346248 NA 0.585590102556 0.536819143741 0.5 0.888888888889 1.0 NC_045512.2:92-133 + 92 133 14 NotMaximal CUG NearCognate =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;91;42;0&p=30&e=30&w=0&f=92-133", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:92-133&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") 2.5548 0.9741 0.758713871855 3.36727730278 -2.10319285714 4.65799285714 NA 0.266286830539 0.853338759564 NA 0.966521243692 0.266286830539 0.5 0.777777777778 0.0 NC_045512.2:147-188 - 147 188 14 NotMaximal CUG NearCognate =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;146;42;0&s=-&p=30&e=30&w=0&f=147-188-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:147-188&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") 2.45066428571 0.9788 0.437850174413 5.59703850523 0.469635714286 1.98102857142 NA 0.978808399805 0.978808399805 NA 0.978808399805 0.978808399805 0.5 1.14545454545 0.0 NC_045512.2:147-182 - 147 182 12 NotMaximal AAG NearCognate =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;146;36;0&s=-&p=30&e=30&w=0&f=147-182-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:147-182&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") 2.39481666667 0.9788 0.510825203482 4.68813333866 0.515925 1.87889166667 NA 0.978808399805 0.978808399805 NA 0.978808399805 0.978808399805 0.472222222222 1.5 0.0 NC_045512.2:147-179 - 147 179 11 NotMaximal AUA NearCognate =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;146;33;0&s=-&p=30&e=30&w=0&f=147-179-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:147-179&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") 2.33189090909 0.9788 0.557263858344 4.18453641695 2.45614545455 -0.124254545455 NA 0.978808399805 0.978808399805 NA 0.951649031418 0.951649031418 0.484848484848 1.546875 0.0 NC_045512.2:29732-29764 - 29732 29764 11 Maximal CUG NearCognate =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29731;33;0&s=-&p=30&e=30&w=0&f=29732-29764-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29732-29764&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") 2.22806363636 0.9521 0.0632356551704 35.2342935383 2.44355454545 -0.215490909095 NA 0.85809539313 0.949317922839 NA 0.949317922839 0.83972326225 0.636363636364 1.52777777778 0.0 NC_045512.2:6426-6461 + 6426 6461 12 Maximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6425;36;0&p=30&e=30&w=0&f=6426-6461", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6426-6461&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") 1.67059166667 0.9813 0.905828756635 1.84426874775 -10.8305666667 12.5011583333 NA 0.981299039557 0.32035161973 NA 0.871704378968 0.094488035162 0.388888888889 0.734693877551 1.0 NC_045512.2:69-98 - 69 98 10 Maximal GUG NearCognate =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;68;30;0&s=-&p=30&e=30&w=0&f=69-98-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:69-98&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") 1.2184 0.9411 0.383627423774 3.17599818077 -0.60799 1.82639 NA 0.860260459059 0.860260459059 NA 0.477942373433 0.390053719681 0.4 0.833333333333 0.0 NC_045512.2:29592-29642 - 29592 29642 17 Maximal GUG NearCognate ORF10 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29591;51;0&s=-&p=30&e=30&w=0&f=29592-29642-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29592-29642&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") 1.00952352941 0.98 0.260110090548 3.88113943324 -1.73757647059 2.7471 NA 0.979977209832 0.979977209832 NA 0.979977209832 0.979977209832 0.372549019608 1.15909090909 0.0 NC_045512.2:136-216 - 136 216 27 NotMaximal CUG NearCognate =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;135;81;0&s=-&p=30&e=30&w=0&f=136-216-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:136-216&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") 0.901892592593 0.9716 0.647177714063 1.39357795084 -1.71612962963 2.61802222222 NA 0.0174377340062 0.333954094091 NA 0.953325736611 0.0 0.469135802469 1.34626038781 0.0 NC_045512.2:29771-29803 + 29771 29803 11 Maximal AUG Canonical =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29770;33;0&p=30&e=30&w=0&f=29771-29803", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29771-29803&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") 0.822836363636 0.9491 0.15960422517 5.15547982992 -1.87029090909 2.69312727273 0.924811981117 0.942979000488 0.940625101742 0.91611916002 0.949317922839 0.940625101742 0.545454545455 0.0 0.0 NC_045512.2:158-250 + 158 250 31 NotMaximal AGG NearCognate =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;157;93;0&p=30&e=30&w=0&f=158-250", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:158-250&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") 0.630590322581 0.981 0.472058138986 1.33583190396 2.25515483871 -1.62456451613 NA 0.998831189972 0.974321992512 NA 0.978808399805 0.974321992512 0.537634408602 1.1904 0.0 NC_045512.2:13473-13517 + 13473 13517 15 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13472;45;0&p=30&e=30&w=0&f=13473-13517", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13473-13517&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") 0.614493333333 1.0 0.222222222222 2.76522 -2.26063333333 2.87512666667 NA 0.912111346248 1.0 NA 1.0 0.912111346248 0.622222222222 0.918367346939 1.0 NC_045512.2:13467-13517 + 13467 13517 17 Maximal ACG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13466;51;0&p=30&e=30&w=0&f=13467-13517", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13467-13517&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") 0.595141176471 1.0 0.196078431373 3.03522 -2.05076470588 2.64590588235 NA 0.912111346248 1.0 NA 1.0 0.912111346248 0.627450980392 1.0 1.0 NC_045512.2:13482-13517 + 13482 13517 12 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13481;36;0&p=30&e=30&w=0&f=13482-13517", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13482-13517&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") 0.592958333333 1.0 0.277777777778 2.13465 -3.1272 3.72015833333 NA 0.912111346248 1.0 NA 1.0 0.912111346248 0.638888888889 0.830769230769 1.0 NC_045512.2:29735-29764 + 29735 29764 10 Maximal AGG NearCognate =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29734;30;0&p=30&e=30&w=0&f=29735-29764", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29735-29764&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") 0.27738 0.9505 0.0351129295375 7.89965416311 1.28606 -1.00868 NA 0.94430734169 0.949317922839 NA 0.949317922839 0.94430734169 0.6 1.55844155844 0.0 NC_045512.2:26338-26379 - 26338 26379 14 NotMaximal AUU NearCognate E =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26337;42;0&s=-&p=30&e=30&w=0&f=26338-26379-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26338-26379&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") 0.275092857143 1.0 0.047619047619 5.77695 -1.29957142857 1.57466428571 NA 1.0 1.0 NA 1.0 1.0 0.52380952381 1.05 0.0 NC_045512.2:220-261 + 220 261 14 NotMaximal AUC NearCognate =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;219;42;0&p=30&e=30&w=0&f=220-261", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:220-261&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") 0.134135714286 0.9889 0.2415710247 0.555264086214 -0.10855 0.242685714286 NA 1.0 0.978808399805 NA 0.978808399805 0.978808399805 0.52380952381 1.05 0.0 NC_045512.2:136-243 - 136 243 36 Maximal ACG NearCognate =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;135;108;0&s=-&p=30&e=30&w=0&f=136-243-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:136-243&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") 0.0827611111111 0.974 0.579706836435 0.142763731441 -2.53865277778 2.62141388889 NA 0.0174377340062 0.333954094091 NA 0.983177600521 0.0 0.472222222222 1.33333333333 0.0 NC_045512.2:29701-29772 - 29701 29772 24 Maximal AUU NearCognate =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29700;72;0&s=-&p=30&e=30&w=0&f=29701-29772-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29701-29772&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -0.1324 0.9585 0.259736013599 -0.509748333185 -2.46090416667 2.32850416667 NA 0.96267947257 0.83972326225 NA 0.949317922839 0.8347126811 0.527777777778 1.00840336134 0.0 NC_045512.2:147-209 - 147 209 21 NotMaximal ACG NearCognate =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;146;63;0&s=-&p=30&e=30&w=0&f=147-209-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:147-209&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -0.183504761905 0.9788 0.486500193792 -0.377193604949 0.339066666667 -0.522571428572 NA 0.978808399805 0.978808399805 NA 0.978808399805 0.978808399805 0.52380952381 1.38970588235 0.0 NC_045512.2:86-133 + 86 133 16 NotMaximal GUG NearCognate =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;85;48;0&p=30&e=30&w=0&f=86-133", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:86-133&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -0.185025 0.9732 0.79320443876 -0.233262688607 -2.22376875 2.03874375 NA 0.266286830539 0.631010906723 NA 0.966521243692 0.257187042162 0.520833333333 0.615384615385 0.0 NC_045512.2:143-250 + 143 250 36 Maximal AUU NearCognate =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;142;108;0&p=30&e=30&w=0&f=143-250", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:143-250&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -0.239158333333 0.9802 0.474418479369 -0.504108384756 1.86737222222 -2.10653055556 NA 0.998831189972 0.094488035162 NA 0.094488035162 0.094488035162 0.518518518519 1.23979591837 0.0 NC_045512.2:3270-3299 - 3270 3299 10 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3269;30;0&s=-&p=30&e=30&w=0&f=3270-3299-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3270-3299&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -0.24054 0.1478 6.5893739061 -0.0365042268701 -2.16831 1.92777 NA 0.0174377340062 0.739212111346 NA 0.450685332899 0.0 0.333333333333 0.0 0.0 NC_045512.2:223-261 + 223 261 13 NotMaximal AUC NearCognate =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;222;39;0&p=30&e=30&w=0&f=223-261", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:223-261&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -0.295684615385 0.9897 0.233957246935 -1.26384037793 0.370876923077 -0.666561538462 NA 1.0 0.978808399805 NA 0.966446361713 0.966446361713 0.538461538462 1.08333333333 0.0 1a.uORF2 NC_045512.2:29700-29774 + 29700 29774 25 NotMaximal AGG NearCognate =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29699;75;0&p=30&e=30&w=0&f=29700-29774", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29700-29774&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -0.43956 0.9584 0.291215433145 -1.50939802624 -2.596116 2.156556 NA 0.949317922839 0.0 NA 0.96267947257 0.0 0.533333333333 0.94696969697 0.0 NC_045512.2:26348-26389 + 26348 26389 14 Maximal CUG NearCognate E =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26347;42;0&p=30&e=30&w=0&f=26348-26389", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26348-26389&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -0.460735714286 1.0 0.047619047619 -9.67545000001 -0.154621428571 -0.306114285715 NA 1.0 1.0 NA 1.0 1.0 0.47619047619 1.69696969697 0.0 NC_045512.2:236-304 - 236 304 23 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;235;69;0&s=-&p=30&e=30&w=0&f=236-304-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:236-304&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -0.52532173913 0.9982 0.261416391342 -2.00952104202 -2.89228695652 2.36696521739 NA 0.953514569429 0.978808399805 NA 1.0 0.953514569429 0.521739130435 0.87619047619 0.565217391304 NC_045512.2:29697-29774 + 29697 29774 26 NotMaximal AUU NearCognate =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29696;78;0&p=30&e=30&w=0&f=29697-29774", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29697-29774&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -0.538853846154 0.9591 0.293097299738 -1.83848110043 -2.91745384615 2.3786 NA 0.949317922839 0.0 NA 0.92330783005 0.0 0.512820512821 0.984848484848 0.0 NC_045512.2:25505-25579 + 25505 25579 25 NotMaximal AAG NearCognate ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25504;75;0&p=30&e=30&w=0&f=25505-25579", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25505-25579&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -0.584156 1.0 1.09333333333 -0.53428902439 -1.94834 1.364184 NA 0.0174377340062 0.0174377340062 NA 1.0 0.0174377340062 0.466666666667 0.75 0.906666666667 NC_045512.2:26338-26397 - 26338 26397 20 NotMaximal AAG NearCognate E =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26337;60;0&s=-&p=30&e=30&w=0&f=26338-26397-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26338-26397&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -0.598995 1.0 0.1 -5.98995 -2.02716 1.428165 NA 1.0 0.254738727006 NA 0.094488035162 0.094488035162 0.466666666667 1.22448979592 0.0 NC_045512.2:236-277 - 236 277 14 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;235;42;0&s=-&p=30&e=30&w=0&f=236-277-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:236-277&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -0.634214285714 0.997 0.119945976252 -5.28749946876 -1.64112142857 1.00690714286 NA 0.953514569429 0.978808399805 NA 1.0 0.953514569429 0.547619047619 1.125 0.285714285714 NC_045512.2:236-283 - 236 283 16 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;235;48;0&s=-&p=30&e=30&w=0&f=236-283-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:236-283&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -0.68659375 0.9974 0.146619395887 -4.68283030253 -2.04881875 1.362225 NA 0.953514569429 0.978808399805 NA 1.0 0.953514569429 0.5625 0.847058823529 0.375 NC_045512.2:236-310 - 236 310 25 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;235;75;0&s=-&p=30&e=30&w=0&f=236-310-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:236-310&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -0.738032 0.9983 0.280503080035 -2.63110123393 -2.554164 1.816132 NA 0.953514569429 0.978808399805 NA 0.994989418851 0.953514569429 0.52 1.00267379679 0.6 NC_045512.2:29709-29774 + 29709 29774 22 NotMaximal UUG NearCognate =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29708;66;0&p=30&e=30&w=0&f=29709-29774", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29709-29774&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -0.77425 0.9571 0.283954413369 -2.72667006937 -2.86152272727 2.08727272727 NA 0.949317922839 0.0 NA 0.648797004721 0.0 0.515151515152 1.14186851211 0.0 NC_045512.2:29571-29618 + 29571 29618 16 Maximal ACG NearCognate ORF10 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29570;48;0&p=30&e=30&w=0&f=29571-29618", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29571-29618&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -0.78049375 0.9799 0.191596779725 -4.07362666075 -3.01465 2.23415625 NA 0.979977209832 0.973888979326 NA 0.979977209832 0.973888979326 0.375 2.4 0.0 NC_045512.2:29688-29774 + 29688 29774 29 Maximal GUG NearCognate =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29687;87;0&p=30&e=30&w=0&f=29688-29774", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29688-29774&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -0.848775862069 0.9612 0.333151502778 -2.54771734479 -3.42707241379 2.57829655172 NA 0.949317922839 0.0 NA 0.979977209832 0.0 0.505747126437 0.915789473684 0.0 NC_045512.2:147-230 - 147 230 28 Maximal GUG NearCognate =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;146;84;0&s=-&p=30&e=30&w=0&f=147-230-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:147-230&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -0.995757142857 0.9788 0.486500193792 -2.04677645675 -1.02863571429 0.0328785714287 NA 0.978808399805 0.978808399805 NA 0.978808399805 0.978808399805 0.535714285714 1.16666666667 0.0 NC_045512.2:29828-29866 + 29828 29866 13 NotMaximal GUG NearCognate =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29827;39;0&p=30&e=30&w=0&f=29828-29866", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29828-29866&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -1.03698461538 0.9115 0.536771474004 -1.93189218429 -3.38248461538 2.3455 NA 0.876487058441 0.78308643985 NA 0.942979000488 0.757792609474 0.384615384615 0.0 0.0 NC_045512.2:29740-29841 + 29740 29841 34 NotMaximal ACG NearCognate =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29739;102;0&p=30&e=30&w=0&f=29740-29841", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29740-29841&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -1.04913529412 0.9415 0.135014606574 -7.77053180201 -1.90064117647 0.851505882351 NA 0.904134787563 0.599120950676 NA 0.949317922839 0.599120950676 0.441176470588 0.83950617284 0.0 NC_045512.2:147-227 - 147 227 27 NotMaximal CUG NearCognate =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;146;81;0&s=-&p=30&e=30&w=0&f=147-227-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:147-227&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -1.06114444444 0.9788 0.491905751501 -2.15721089091 -1.1158962963 0.0547518518563 NA 0.978808399805 0.978808399805 NA 0.978808399805 0.978808399805 0.530864197531 1.22727272727 0.0 NC_045512.2:147-221 - 147 221 25 NotMaximal AUC NearCognate =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;146;75;0&s=-&p=30&e=30&w=0&f=147-221-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:147-221&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -1.071252 0.9788 0.504014200769 -2.12544011333 -1.253144 0.181892 NA 0.978808399805 0.978808399805 NA 0.978808399805 0.978808399805 0.533333333333 1.3125 0.0 NC_045512.2:29538-29567 + 29538 29567 10 Maximal AUG Canonical ORF10 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29537;30;0&p=30&e=30&w=0&f=29538-29567", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29538-29567&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -1.09765 0.9942 0.36734772979 -2.98804078803 -0.65603 -0.44162 0.971889956048 0.979977209832 0.979977209832 0.95186716588 1.0 0.979977209832 0.5 0.0 0.0 10.uORF NC_045512.2:26338-26406 - 26338 26406 23 NotMaximal AGG NearCognate E =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26337;69;0&s=-&p=30&e=30&w=0&f=26338-26406-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26338-26406&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -1.13538695652 1.0 0.144927536232 -7.83416999999 -2.99113913043 1.85575217391 NA 1.0 0.254738727006 NA 0.48414129904 0.094488035162 0.449275362319 1.15 0.0 NC_045512.2:29688-29753 - 29688 29753 22 NotMaximal AUC NearCognate =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29687;66;0&s=-&p=30&e=30&w=0&f=29688-29753-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29688-29753&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -1.1489 0.965 0.327431296042 -3.50882769572 -2.61688181818 1.46798181818 NA 0.973615497314 0.923985023604 NA 0.949317922839 0.917623311086 0.515151515152 0.926315789474 0.0 NC_045512.2:29713-29841 + 29713 29841 43 Maximal AAG NearCognate =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29712;129;0&p=30&e=30&w=0&f=29713-29841", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29713-29841&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -1.15188837209 0.9466 0.1708418585 -6.74242473245 -1.7930627907 0.641174418608 NA 0.904134787563 0.599120950676 NA 0.947240761843 0.578671658799 0.46511627907 0.719866071429 0.0 NC_045512.2:147-224 - 147 224 26 Maximal AUG Canonical =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;146;78;0&s=-&p=30&e=30&w=0&f=147-224-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:147-224&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -1.17871538462 0.9788 0.510825203482 -2.30747303889 -0.972173076923 -0.206542307697 0.960107439362 0.978808399805 0.978808399805 0.960107439362 0.978808399805 0.978808399805 0.525641025641 1.3 0.0 NC_045512.2:29725-29841 + 29725 29841 39 NotMaximal AUU NearCognate =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29724;117;0&p=30&e=30&w=0&f=29725-29841", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29725-29841&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -1.24567435897 0.9444 0.179531718052 -6.93846398 -1.77891025641 0.53323589744 NA 0.904134787563 0.599120950676 NA 0.917063324109 0.548494221065 0.452991452991 0.847826086957 0.0 NC_045512.2:29806-29841 + 29806 29841 12 Maximal AUG Canonical =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29805;36;0&p=30&e=30&w=0&f=29806-29841", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29806-29841&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -1.379325 0.9279 0.0899336391475 -15.3371420647 -1.42770833333 0.0483833333333 0.942979000488 0.904134787563 0.601474849422 0.601474849422 0.942979000488 0.601474849422 0.305555555556 0.0 0.0 NC_045512.2:29819-29866 + 29819 29866 16 Maximal AUU NearCognate =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29818;48;0&p=30&e=30&w=0&f=29819-29866", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29819-29866&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -1.40316875 0.9174 0.436126822628 -3.21734109713 -3.015625 1.61245625 NA 0.876487058441 0.78308643985 NA 0.942979000488 0.757792609474 0.333333333333 0.0 0.0 NC_045512.2:187-261 + 187 261 25 NotMaximal AGG NearCognate =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;186;75;0&p=30&e=30&w=0&f=187-261", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:187-261&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -1.428692 0.9845 0.39409787693 -3.62522125501 -2.545756 1.117064 NA 1.0 0.953325736611 NA 0.477942373433 0.477942373433 0.56 1.20137299771 0.0 NC_045512.2:29749-29841 + 29749 29841 31 NotMaximal ACG NearCognate =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29748;93;0&p=30&e=30&w=0&f=29749-29841", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29749-29841&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -1.45766129032 0.9408 0.148080536243 -9.84370618386 -2.28491290323 0.827251612906 NA 0.904134787563 0.599120950676 NA 0.949317922839 0.599120950676 0.41935483871 0.505434782609 0.0 NC_045512.2:25454-25579 + 25454 25579 42 NotMaximal AGG NearCognate ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25453;126;0&p=30&e=30&w=0&f=25454-25579", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25454-25579&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -1.4692952381 1.0 1.12698412698 -1.30374084507 -2.77920714286 1.30991190476 NA 0.0174377340062 0.0174377340062 NA 0.094488035162 0.0174377340062 0.468253968254 1.03764705882 0.920634920635 NC_045512.2:163-261 + 163 261 33 Maximal ACG NearCognate =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;162;99;0&p=30&e=30&w=0&f=163-261", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:163-261&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -1.49243333333 0.9831 0.412075709559 -3.62174546742 -2.07600909091 0.583575757579 NA 1.0 0.953325736611 NA 0.978808399805 0.953325736611 0.535353535354 1.26923076923 0.0 1a.uORF2.ext NC_045512.2:190-261 + 190 261 24 NotMaximal CUG NearCognate =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;189;72;0&p=30&e=30&w=0&f=190-261", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:190-261&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -1.50560833333 0.9847 0.396329032816 -3.79888478679 -2.4576625 0.95205416667 NA 1.0 0.953325736611 NA 0.978808399805 0.953325736611 0.555555555556 1.26315789474 0.0 NC_045512.2:29688-29771 - 29688 29771 28 NotMaximal UUG NearCognate =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29687;84;0&s=-&p=30&e=30&w=0&f=29688-29771-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29688-29771&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -1.53679642857 0.9616 0.319969106779 -4.80295252264 -2.08393214286 0.547135714287 NA 0.973615497314 0.923985023604 NA 0.0 0.0 0.5 0.972222222222 0.0 NC_045512.2:25475-25579 + 25475 25579 35 NotMaximal UUG NearCognate ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25474;105;0&p=30&e=30&w=0&f=25475-25579", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25475-25579&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -1.54651714286 1.0 1.07619047619 -1.43702920354 -2.44945428571 0.902937142854 NA 0.0174377340062 0.0174377340062 NA 0.70035161973 0.0174377340062 0.47619047619 1.20689655172 0.904761904762 NC_045512.2:29752-29841 + 29752 29841 30 NotMaximal AUC NearCognate =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29751;90;0&p=30&e=30&w=0&f=29752-29841", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29752-29841&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -1.62583666667 0.9405 0.153016554117 -10.6252338255 -2.44775666667 0.821919999997 NA 0.904134787563 0.599120950676 NA 0.949317922839 0.599120950676 0.411111111111 0.272727272727 0.0 NC_045512.2:25472-25579 + 25472 25579 36 NotMaximal AUU NearCognate ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25471;108;0&p=30&e=30&w=0&f=25472-25579", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25472-25579&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -1.66088611111 1.0 1.07407407407 -1.54634224138 -2.62361111111 0.962725000001 NA 0.0174377340062 0.0174377340062 NA 0.390053719681 0.0174377340062 0.462962962963 1.24137931034 0.907407407407 NC_045512.2:25487-25579 + 25487 25579 31 NotMaximal CUG NearCognate ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25486;93;0&p=30&e=30&w=0&f=25487-25579", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25487-25579&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -1.66254193548 1.0 1.11827956989 -1.48669615384 -1.88118709677 0.218645161294 NA 0.0174377340062 0.0174377340062 NA 0.545277551685 0.0174377340062 0.47311827957 0.99358974359 0.89247311828 NC_045512.2:26219-26278 + 26219 26278 20 NotMaximal AAG NearCognate E =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26218;60;0&p=30&e=30&w=0&f=26219-26278", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26219-26278&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -1.689645 0.9951 0.356925811392 -4.73388291368 -6.27206 4.582415 NA 1.0 0.706439850236 NA 1.0 0.706439850236 0.433333333333 1.45454545455 0.0 NC_045512.2:29776-29841 + 29776 29841 22 NotMaximal AGG NearCognate =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29775;66;0&p=30&e=30&w=0&f=29776-29841", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29776-29841&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -1.7014 0.9373 0.0969359798134 -17.551790401 -1.96488181818 0.263481818182 NA 0.904134787563 0.599120950676 NA 0.949317922839 0.599120950676 0.409090909091 0.0 0.0 NC_045512.2:29522-29599 - 29522 29599 26 Maximal AUA NearCognate N,ORF10 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29521;78;0&s=-&p=30&e=30&w=0&f=29522-29599-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29522-29599&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -1.70677692308 0.9895 0.322771968373 -5.28787221419 -3.04609615385 1.33931923077 NA 0.904365944978 0.471854142927 NA 0.979977209832 0.383965489175 0.423076923077 1.17293233083 0.0 NC_045512.2:25532-25579 + 25532 25579 16 NotMaximal UUG NearCognate ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25531;48;0&p=30&e=30&w=0&f=25532-25579", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25532-25579&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -1.7515 1.0 1.08333333333 -1.61676923077 -2.92921875 1.17771875 NA 0.0174377340062 0.0174377340062 NA 0.893413641543 0.0174377340062 0.4375 0.872727272727 0.854166666667 NC_045512.2:29764-29841 + 29764 29841 26 NotMaximal GUG NearCognate =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29763;78;0&p=30&e=30&w=0&f=29764-29841", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29764-29841&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -1.7626 0.9391 0.163052589544 -10.8100092426 -2.58880769231 0.826207692308 NA 0.904134787563 0.599120950676 NA 0.94430734169 0.594110369526 0.410256410256 0.0 0.0 NC_045512.2:29551-29598 + 29551 29598 16 Maximal AAG NearCognate ORF10 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29550;48;0&p=30&e=30&w=0&f=29551-29598", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29551-29598&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -1.77551875 0.9833 0.191171115273 -9.287589014 -2.2824625 0.50694375 NA 0.979977209832 0.973888979326 NA 1.0 0.973888979326 0.375 2.4 0.0 NC_045512.2:29688-29741 - 29688 29741 18 NotMaximal GUG NearCognate =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29687;54;0&s=-&p=30&e=30&w=0&f=29688-29741-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29688-29741&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -1.85052777778 0.9685 0.400193806274 -4.62407900564 -4.06173333333 2.21120555555 NA 0.973615497314 0.923985023604 NA 0.949317922839 0.917623311086 0.5 0.296703296703 0.0 NC_045512.2:26237-26278 + 26237 26278 14 NotMaximal ACG NearCognate E =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26236;42;0&p=30&e=30&w=0&f=26237-26278", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26237-26278&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -1.90750714286 1.0 0.285714285714 -6.67627500001 -7.49989285714 5.59238571428 NA 1.0 1.0 NA 1.0 1.0 0.428571428571 2.1 0.0 NC_045512.2:28515-28574 + 28515 28574 20 NotMaximal AUG Canonical N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28514;60;0&p=30&e=30&w=0&f=28515-28574", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28515-28574&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -1.929475 1.0 0.35 -5.51278571429 0.62283 -2.552305 0.906456128927 1.0 1.0 0.906456128927 1.0 1.0 0.466666666667 1.25 0.5 NC_045512.2:29688-29789 - 29688 29789 34 NotMaximal AGG NearCognate =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29687;102;0&s=-&p=30&e=30&w=0&f=29688-29789-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29688-29789&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -1.98622647059 0.9595 0.304813299156 -6.51620672749 -2.18220882353 0.195982352939 NA 0.973615497314 0.923985023604 NA 0.949317922839 0.917623311086 0.519607843137 0.74780058651 0.0 NC_045512.2:59-133 + 59 133 25 NotMaximal CUG NearCognate =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;58;75;0&p=30&e=30&w=0&f=59-133", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:59-133&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -2.00538 0.9455 0.644360204564 -3.11220336979 -3.244044 1.238664 NA 0.266286830539 0.595643822237 NA 0.843265505453 0.257187042162 0.44 0.833333333333 0.0 1a.uORF1.ext NC_045512.2:208-261 + 208 261 18 NotMaximal GUG NearCognate =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;207;54;0&p=30&e=30&w=0&f=208-261", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:208-261&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -2.03159444444 0.9867 0.320324738633 -6.34229642429 -1.44174444444 -0.589849999996 NA 1.0 0.953325736611 NA 0.978808399805 0.953325736611 0.555555555556 0.977375565611 0.0 NC_045512.2:26225-26278 + 26225 26278 18 NotMaximal AAG NearCognate E =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26224;54;0&p=30&e=30&w=0&f=26225-26278", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26225-26278&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -2.05789444444 0.9946 0.39658423488 -5.18904752999 -6.86178333333 4.80388888889 NA 1.0 0.706439850236 NA 1.0 0.706439850236 0.425925925926 1.71428571429 0.0 NC_045512.2:26228-26278 + 26228 26278 17 NotMaximal CUG NearCognate E =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26227;51;0&p=30&e=30&w=0&f=26228-26278", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26228-26278&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -2.06737058824 0.9942 0.380697033011 -5.43048778681 -7.26398235294 5.1966117647 NA 1.0 0.706439850236 NA 0.094488035162 0.094488035162 0.43137254902 1.74358974359 0.0 NC_045512.2:178-261 + 178 261 28 NotMaximal AUC NearCognate =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;177;84;0&p=30&e=30&w=0&f=178-261", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:178-261&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -2.09638928571 0.9839 0.42484813347 -4.93444391196 -1.96865714286 -0.127732142853 NA 1.0 0.953325736611 NA 0.368347712844 0.368347712844 0.547619047619 1.11363636364 0.0 NC_045512.2:26319-26384 + 26319 26384 22 Maximal AUU NearCognate E =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26318;66;0&p=30&e=30&w=0&f=26319-26384", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26319-26384&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -2.10027727273 1.0 0.136363636364 -15.4020333334 -3.53936818182 1.43909090909 NA 1.0 1.0 NA 1.0 1.0 0.439393939394 0.951923076923 0.0 NC_045512.2:29688-29816 - 29688 29816 43 NotMaximal AUU NearCognate =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29687;129;0&s=-&p=30&e=30&w=0&f=29688-29816-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29688-29816&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -2.13535813953 0.9566 0.249180964341 -8.56950748695 -2.17700465116 0.0416465116328 NA 0.973615497314 0.915292202507 NA 0.942979000488 0.906797981442 0.480620155039 0.697297297297 0.0 NC_045512.2:29688-29807 - 29688 29807 40 NotMaximal AUU NearCognate =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29687;120;0&s=-&p=30&e=30&w=0&f=29688-29807-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29688-29807&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -2.142645 0.9577 0.267869536667 -7.99883789198 -2.31613 0.173485 NA 0.973615497314 0.915292202507 NA 0.942979000488 0.906797981442 0.5 0.685714285714 0.0 NC_045512.2:29688-29804 - 29688 29804 39 NotMaximal AGG NearCognate =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29687;117;0&s=-&p=30&e=30&w=0&f=29688-29804-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29688-29804&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -2.14287692308 0.958 0.274737986325 -7.79971110564 -2.23354358974 0.0906666666636 NA 0.973615497314 0.915292202507 NA 0.942979000488 0.906797981442 0.512820512821 0.668571428571 0.0 NC_045512.2:29688-29840 - 29688 29840 51 Maximal AUG Canonical =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29687;153;0&s=-&p=30&e=30&w=0&f=29688-29840-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29688-29840&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -2.14634901961 0.9512 0.224025657709 -9.58081784718 -2.01767647059 -0.128672549022 0.904134787563 0.973615497314 0.573788051441 0.565293830376 0.904134787563 0.565293830376 0.457516339869 0.6375 0.0 NC_045512.2:196-261 + 196 261 22 NotMaximal ACG NearCognate =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;195;66;0&p=30&e=30&w=0&f=196-261", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:196-261&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -2.17795454545 0.9853 0.370440738408 -5.87936023131 -2.41189090909 0.233936363641 NA 1.0 0.953325736611 NA 0.951649031418 0.926166368224 0.560606060606 1.35882352941 0.0 NC_045512.2:16360-16389 - 16360 16389 10 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16359;30;0&s=-&p=30&e=30&w=0&f=16360-16389-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16360-16389&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -2.17877 1.0 0.433333333333 -5.02793076923 -3.91721 1.73844 NA 1.0 1.0 NA 0.915386618916 0.915386618916 0.366666666667 1.0 1.0 NC_045512.2:15898-15927 - 15898 15927 10 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15897;30;0&s=-&p=30&e=30&w=0&f=15898-15927-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15898-15927&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -2.20119 1.0 0.833333333333 -2.641428 -11.00598 8.80479 NA 1.0 1.0 NA 0.0 0.0 0.366666666667 0.0 0.0 NC_045512.2:26628-26663 - 26628 26663 12 Maximal AUA NearCognate M =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26627;36;0&s=-&p=30&e=30&w=0&f=26628-26663-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26628-26663&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -2.22568333333 1.0 1.02777777778 -2.16552972973 -11.1275166667 8.90183333334 NA 0.890405339411 1.0 NA 0.348738401433 0.348738401433 0.361111111111 0.0 0.0 NC_045512.2:26231-26278 + 26231 26278 16 NotMaximal AUG Canonical E =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26230;48;0&p=30&e=30&w=0&f=26231-26278", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26231-26278&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -2.24531875 1.0 0.3125 -7.18502 -7.20235625 4.9570375 0.094488035162 1.0 1.0 0.094488035162 1.0 1.0 0.416666666667 2.0 0.0 NC_045512.2:27163-27192 + 27163 27192 10 NotMaximal GUG NearCognate M =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27162;30;0&p=30&e=30&w=0&f=27163-27192", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27163-27192&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -2.26883 1.0 0.166666666667 -13.61298 -2.13243 -0.1364 NA 0.706439850236 0.094488035162 NA 1.0 0.094488035162 0.366666666667 0.0 0.866666666667 NC_045512.2:29688-29834 - 29688 29834 49 NotMaximal AUA NearCognate =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29687;147;0&s=-&p=30&e=30&w=0&f=29688-29834-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29688-29834&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -2.2952244898 0.953 0.225883084371 -10.1611171823 -2.09748979592 -0.197734693882 NA 0.973615497314 0.621732052743 NA 0.917646101253 0.613237831678 0.448979591837 0.706730769231 0.0 NC_045512.2:29522-29566 - 29522 29566 15 NotMaximal AUA NearCognate N,ORF10 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29521;45;0&s=-&p=30&e=30&w=0&f=29522-29566-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29522-29566&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -2.30688 0.9966 0.377777777778 -6.10644705882 -3.54161333333 1.23473333333 NA 0.904365944978 0.477942373433 NA 0.979977209832 0.390053719681 0.511111111111 0.0 0.0 NC_045512.2:5-133 + 5 133 43 Maximal AAG NearCognate =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4;129;0&p=4&e=30&w=0&f=5-133", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5-133&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -2.3155 0.8818 0.700365995429 -3.30612853153 -3.49395813953 1.17845813953 NA 0.266286830539 0.0 NA 0.355660100928 0.0 0.418604651163 0.732954545455 0.0 NC_045512.2:13-42 - 13 42 10 NotMaximal AAG NearCognate =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12;30;0&s=-&p=30&e=12&w=0&f=13-42-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13-42&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -2.36014 0.7616 0.875038064469 -2.6971855235 1.22943 -3.58957 NA 0.355660100928 0.085388246785 NA 0.0 0.0 0.433333333333 0.0 0.0 NC_045512.2:25541-25579 + 25541 25579 13 NotMaximal UUG NearCognate ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25540;39;0&p=30&e=30&w=0&f=25541-25579", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25541-25579&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -2.36204615385 1.0 1.12820512821 -2.09363181819 -5.25486923077 2.89282307692 NA 0.0174377340062 0.0174377340062 NA 1.0 0.0174377340062 0.410256410256 0.65 0.820512820513 NC_045512.2:25535-25579 + 25535 25579 15 NotMaximal UUG NearCognate ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25534;45;0&p=30&e=30&w=0&f=25535-25579", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25535-25579&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -2.36395333333 1.0 1.02222222222 -2.31256304348 -4.38294 2.01898666667 NA 0.0174377340062 0.0174377340062 NA 1.0 0.0174377340062 0.444444444444 0.909090909091 0.844444444444 NC_045512.2:211-261 + 211 261 17 NotMaximal UUG NearCognate =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;210;51;0&p=30&e=30&w=0&f=211-261", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:211-261&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -2.36771176471 0.9872 0.339167370317 -6.98095386504 -1.2738 -1.09391176471 NA 1.0 0.953325736611 NA 0.94194041999 0.916457756796 0.549019607843 1.04615384615 0.0 NC_045512.2:29688-29726 - 29688 29726 13 NotMaximal AUG Canonical =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29687;39;0&s=-&p=30&e=30&w=0&f=29688-29726-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29688-29726&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -2.39297692308 0.9712 0.421628765803 -5.67555422488 -4.71656923077 2.32359230769 0.917063324109 0.973615497314 0.942357154485 0.91070161159 0.96769005372 0.935995441966 0.461538461538 0.0 0.0 NC_045512.2:29526-29567 + 29526 29567 14 NotMaximal AGG NearCognate N,ORF10 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29525;42;0&p=30&e=30&w=0&f=29526-29567", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29526-29567&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -2.45926428571 0.9959 0.381438854612 -6.44733554534 -1.58620714286 -0.873057142853 NA 0.979977209832 0.477942373433 NA 1.0 0.477942373433 0.5 0.0 0.0 NC_045512.2:25445-25579 + 25445 25579 45 NotMaximal GUG NearCognate ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25444;135;0&p=30&e=30&w=0&f=25445-25579", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25445-25579&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -2.45932666667 1.0 1.24444444444 -1.97624464286 -3.69356888889 1.23424222222 NA 0.0174377340062 0.0174377340062 NA 0.094488035162 0.0174377340062 0.459259259259 1.0 0.911111111111 NC_045512.2:136-195 - 136 195 20 NotMaximal AAG NearCognate =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;135;60;0&s=-&p=30&e=30&w=0&f=136-195-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:136-195&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -2.545555 0.969 0.669359832593 -3.80296945836 -5.040585 2.49503 NA 0.0174377340062 0.333954094091 NA 0.978808399805 0.0 0.433333333333 1.07142857143 0.0 NC_045512.2:29522-29557 - 29522 29557 12 NotMaximal CUG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29521;36;0&s=-&p=30&e=30&w=0&f=29522-29557-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29522-29557&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -2.56248333333 0.9999 0.472222222222 -5.42643529411 -4.35141666667 1.78893333334 NA 0.904365944978 0.477942373433 NA 0.987637961908 0.390053719681 0.527777777778 0.0 0.0 NC_045512.2:26186-26278 + 26186 26278 31 NotMaximal AUG Canonical ORF3a,E =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26185;93;0&p=30&e=30&w=0&f=26186-26278", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26186-26278&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -2.61121290323 0.9968 0.337801598748 -7.73001937501 -4.66187096774 2.05065806451 0.978368875142 1.0 0.694777795865 0.673146671008 1.0 0.694777795865 0.462365591398 1.61739130435 0.344086021505 NC_045512.2:29806-29856 - 29806 29856 17 NotMaximal AAG NearCognate =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29805;51;0&s=-&p=30&e=30&w=0&f=29806-29856-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29806-29856&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -2.61161176471 0.9208 0.06348256881 -41.1390372769 -2.89625294118 0.284641176466 NA 0.942979000488 0.599120950676 NA 0.904134787563 0.599120950676 0.274509803922 0.0 0.0 NC_045512.2:13-123 - 13 123 37 Maximal GUG NearCognate =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12;111;0&s=-&p=30&e=12&w=0&f=13-123-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13-123&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -2.62021351351 0.8778 0.631886972021 -4.14664905201 -2.50166216216 -0.118551351348 NA 0.355660100928 0.085388246785 NA 0.094488035162 0.0 0.441441441441 0.596774193548 0.0 NC_045512.2:15898-15930 - 15898 15930 11 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15897;33;0&s=-&p=30&e=30&w=0&f=15898-15930-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15898-15930&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -2.81896363636 1.0 0.787878787879 -3.57791538461 -10.9646272727 8.14566363637 NA 1.0 1.0 NA 0.976900537197 0.976900537197 0.393939393939 0.0 0.0 NC_045512.2:29688-29732 - 29688 29732 15 NotMaximal GUG NearCognate =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29687;45;0&s=-&p=30&e=30&w=0&f=29688-29732-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29688-29732&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -2.85030666667 0.9707 0.480232567529 -5.9352631608 -5.09920666667 2.2489 NA 0.973615497314 0.942357154485 NA 0.85809539313 0.826400781377 0.444444444444 0.0 0.0 NC_045512.2:18799-18831 - 18799 18831 11 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18798;33;0&s=-&p=30&e=30&w=0&f=18799-18831-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18799-18831&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -2.85421818182 1.0 1.78787878788 -1.59642711865 -21.3130909091 18.4588727273 1.0 0.0174377340062 1.0 0.0174377340062 1.0 0.0174377340062 0.393939393939 0.0 0.0 NC_045512.2:13-108 - 13 108 32 Maximal AUG Canonical =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12;96;0&s=-&p=30&e=12&w=0&f=13-108-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13-108&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -2.929153125 0.8621 0.656123969225 -4.46432878906 -2.41708125 -0.512071875 0.731137880514 0.355660100928 0.085388246785 0.0 0.966521243692 0.0 0.427083333333 0.738461538462 0.0 NC_045512.2:5441-5479 - 5441 5479 13 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5440;39;0&s=-&p=30&e=30&w=0&f=5441-5479-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5441-5479&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -2.93255384615 1.0 0.948717948718 -3.09107027027 -11.7739769231 8.84142307693 0.979550708123 0.30371479733 0.094488035162 0.094488035162 1.0 0.094488035162 0.333333333333 0.0 0.0 NC_045512.2:18799-18837 - 18799 18837 13 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18798;39;0&s=-&p=30&e=30&w=0&f=18799-18837-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18799-18837&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -2.9352 1.0 1.66666666667 -1.76112 -18.6190153846 15.6838153846 NA 0.0174377340062 1.0 NA 0.938241901351 0.0174377340062 0.384615384615 0.0 0.0 NC_045512.2:12724-12756 + 12724 12756 11 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12723;33;0&p=30&e=30&w=0&f=12724-12756", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12724-12756&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -2.99464545455 1.0 1.12121212121 -2.6709 -8.35030909091 5.35566363636 NA 1.0 1.0 NA 1.0 1.0 0.515151515152 0.471428571429 0.0 NC_045512.2:14752-14811 - 14752 14811 20 NotMaximal ACG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14751;60;0&s=-&p=30&e=30&w=0&f=14752-14811-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14752-14811&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -3.029195 1.0 0.483333333333 -6.2673 -8.709635 5.68044 NA 0.912111346248 1.0 NA 1.0 0.912111346248 0.4 0.839160839161 0.65 NC_045512.2:14752-14817 - 14752 14817 22 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14751;66;0&s=-&p=30&e=30&w=0&f=14752-14817-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14752-14817&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -3.07143636364 1.0 0.439393939394 -6.99016551725 -8.15093636364 5.0795 NA 0.912111346248 1.0 NA 1.0 0.912111346248 0.363636363636 0.923076923077 0.681818181818 NC_045512.2:11342-11398 - 11342 11398 19 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;11341;57;0&s=-&p=30&e=30&w=0&f=11342-11398-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:11342-11398&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -3.08516842105 1.0 0.894736842105 -3.44812941176 -10.2668789474 7.18171052632 NA 0.094488035162 1.0 NA 0.094488035162 0.094488035162 0.438596491228 0.0 0.0 NC_045512.2:14752-14814 - 14752 14814 21 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14751;63;0&s=-&p=30&e=30&w=0&f=14752-14814-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14752-14814&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -3.08788095238 1.0 0.460317460317 -6.70815517241 -8.36985714286 5.28197619048 NA 0.912111346248 1.0 NA 1.0 0.912111346248 0.380952380952 0.881118881119 0.666666666667 NC_045512.2:25442-25579 + 25442 25579 46 Maximal AAG NearCognate ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25441;138;0&p=30&e=30&w=0&f=25442-25579", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25442-25579&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -3.10205217391 0.9984 1.31872950788 -2.35230360386 -3.27189347826 0.169841304351 NA 0.0174377340062 0.0174377340062 NA 0.368347712844 0.0174377340062 0.45652173913 0.985714285714 0.891304347826 NC_045512.2:27037-27108 - 27037 27108 24 NotMaximal AUG Canonical M =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27036;72;0&s=-&p=30&e=30&w=0&f=27037-27108-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27037-27108&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -3.13265833333 0.9999 0.5 -6.26531666666 -5.37630833333 2.24365 0.706439850236 1.0 0.996060556731 0.702500406967 0.706439850236 0.702500406967 0.472222222222 1.0 0.916666666667 NC_045512.2:11342-11404 - 11342 11404 21 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;11341;63;0&s=-&p=30&e=30&w=0&f=11342-11404-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:11342-11404&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -3.19883333333 1.0 0.809523809524 -3.9515 -10.8071809524 7.60834761905 NA 0.094488035162 1.0 NA 1.0 0.094488035162 0.412698412698 0.0 0.0 NC_045512.2:14752-14781 - 14752 14781 10 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14751;30;0&s=-&p=30&e=30&w=0&f=14752-14781-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14752-14781&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -3.22524 1.0 0.433333333333 -7.44286153846 -6.57228 3.34704 NA 0.912111346248 1.0 NA 0.962366921699 0.874478267947 0.366666666667 0.0 1.0 NC_045512.2:12830-12865 - 12830 12865 12 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12829;36;0&s=-&p=30&e=30&w=0&f=12830-12865-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12830-12865&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -3.23365833333 1.0 0.638888888889 -5.06137826086 -11.9779083333 8.74425 NA 0.0174377340062 0.890405339411 NA 0.943330620218 0.0174377340062 0.416666666667 0.0 0.75 NC_045512.2:236-322 - 236 322 29 Maximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;235;87;0&s=-&p=30&e=30&w=0&f=236-322-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:236-322&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -3.25497586207 0.9986 0.299284264398 -10.8758670244 -3.71090344828 0.455927586206 NA 0.953514569429 0.551844375712 NA 1.0 0.526550545336 0.51724137931 0.863095238095 0.655172413793 NC_045512.2:12712-12756 + 12712 12756 15 Maximal ACG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12711;45;0&p=30&e=30&w=0&f=12712-12756", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12712-12756&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -3.27930666667 1.0 0.911111111111 -3.59923902439 -9.46072666667 6.18142 NA 1.0 1.0 NA 0.706439850236 0.706439850236 0.511111111111 0.692307692308 0.0 NC_045512.2:29806-29859 - 29806 29859 18 Maximal AAG NearCognate =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29805;54;0&s=-&p=30&e=30&w=0&f=29806-29859-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29806-29859&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -3.28206666667 0.9199 0.141883891269 -23.1320598647 -2.73265555556 -0.549411111114 NA 0.942979000488 0.599120950676 NA 0.792537847957 0.597118671659 0.277777777778 0.0 0.0 NC_045512.2:14752-14796 - 14752 14796 15 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14751;45;0&s=-&p=30&e=30&w=0&f=14752-14796-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14752-14796&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -3.30930666667 1.0 0.466666666667 -7.09137142858 -8.18038666667 4.87108 NA 0.912111346248 1.0 NA 1.0 0.912111346248 0.422222222222 0.5 0.8 NC_045512.2:19477-19506 - 19477 19506 10 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19476;30;0&s=-&p=30&e=30&w=0&f=19477-19506-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19477-19506&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -3.32534 1.0 1.2 -2.77111666667 -19.84973 16.52439 NA 0.589750936025 1.0 NA 0.658463291551 0.380491616474 0.466666666667 0.0 0.0 NC_045512.2:14752-14808 - 14752 14808 19 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14751;57;0&s=-&p=30&e=30&w=0&f=14752-14808-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14752-14808&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -3.33843684211 1.0 0.508771929825 -6.56175517242 -7.80162631579 4.46318947368 NA 0.912111346248 1.0 NA 0.916877747029 0.828989093277 0.385964912281 0.475 0.631578947368 NC_045512.2:14752-14799 - 14752 14799 16 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14751;48;0&s=-&p=30&e=30&w=0&f=14752-14799-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14752-14799&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -3.387125 1.0 0.4375 -7.742 -7.79729375 4.41016875 NA 0.912111346248 1.0 NA 1.0 0.912111346248 0.395833333333 0.533333333333 0.75 NC_045512.2:3225-3299 + 3225 3299 25 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3224;75;0&p=30&e=30&w=0&f=3225-3299", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3225-3299&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -3.461692 0.261 5.51244473196 -0.62797763394 -7.167036 3.705344 NA 0.0174377340062 0.604323620381 NA 0.0174377340062 0.0174377340062 0.413333333333 0.3125 0.0 NC_045512.2:25471-25506 - 25471 25506 12 Maximal UUG NearCognate ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25470;36;0&s=-&p=30&e=30&w=0&f=25471-25506-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25471-25506&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -3.48314166667 1.0 1.22222222222 -2.84984318182 -2.54571666667 -0.937425000003 NA 0.0894774540127 0.24441803679 NA 1.0 0.0894774540127 0.444444444444 2.28571428571 0.916666666667 NC_045512.2:26288-26320 - 26288 26320 11 Maximal AUA NearCognate E =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26287;33;0&s=-&p=30&e=30&w=0&f=26288-26320-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26288-26320&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -3.48600909091 1.0 0.424242424242 -8.21702142857 -8.44066363636 4.95465454545 NA 1.0 1.0 NA 1.0 1.0 0.363636363636 1.83333333333 0.0 NC_045512.2:13786-13827 - 13786 13827 14 Maximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13785;42;0&s=-&p=30&e=30&w=0&f=13786-13827-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13786-13827&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -3.4929 1.0 0.619047619048 -5.64237692308 -8.32398571429 4.83108571429 NA 1.0 0.0174377340062 NA 0.983005046394 0.0174377340062 0.428571428571 1.75 0.0714285714286 NC_045512.2:15898-15939 - 15898 15939 14 Maximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15897;42;0&s=-&p=30&e=30&w=0&f=15898-15939-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15898-15939&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -3.51522142857 1.0 0.928571428571 -3.78562307692 -10.8649142857 7.34969285714 NA 1.0 1.0 NA 0.811398339573 0.811398339573 0.404761904762 0.0 0.0 NC_045512.2:5441-5485 - 5441 5485 15 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5440;45;0&s=-&p=30&e=30&w=0&f=5441-5485-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5441-5485&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -3.56591333333 1.0 1.02222222222 -3.48839347826 -12.34526 8.77934666667 NA 0.30371479733 0.094488035162 NA 0.813941071138 0.094488035162 0.355555555556 0.0 0.0 NC_045512.2:5441-5476 - 5441 5476 12 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5440;36;0&s=-&p=30&e=30&w=0&f=5441-5476-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5441-5476&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -3.572075 1.0 1.0 -3.572075 -12.4959 8.923825 NA 0.30371479733 0.094488035162 NA 1.0 0.094488035162 0.333333333333 0.0 0.0 NC_045512.2:3228-3299 + 3228 3299 24 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3227;72;0&p=30&e=30&w=0&f=3228-3299", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3228-3299&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -3.5951375 0.2564 5.66844549947 -0.634236935035 -7.28421666667 3.68907916667 NA 0.0174377340062 0.623529220251 NA 0.085388246785 0.0 0.402777777778 0.342857142857 0.0 NC_045512.2:13362-13550 - 13362 13550 63 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13361;189;0&s=-&p=30&e=30&w=0&f=13362-13550-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13362-13550&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -3.63737936508 1.0 0.529100529101 -6.874647 -3.48755714286 -0.149822222223 0.292554126648 1.0 0.0174377340062 0.0174377340062 1.0 0.0174377340062 0.492063492063 0.966976744186 1.0 NC_045512.2:26149-26244 - 26149 26244 32 Maximal AAG NearCognate ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26148;96;0&s=-&p=30&e=30&w=0&f=26149-26244-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26149-26244&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -3.644340625 0.9602 0.451295723628 -8.07528286708 -5.215078125 1.5707375 NA 0.452648543057 0.297567963536 NA 1.0 0.0174377340062 0.4375 1.30909090909 0.71875 NC_045512.2:13362-13538 - 13362 13538 59 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13361;177;0&s=-&p=30&e=30&w=0&f=13362-13538-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13362-13538&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -3.66240169492 1.0 0.54802259887 -6.68293917527 -3.89836101695 0.235959322029 NA 1.0 0.0174377340062 NA 0.943483639915 0.0174377340062 0.497175141243 1.01037882719 1.0 NC_045512.2:25550-25579 + 25550 25579 10 NotMaximal UUG NearCognate ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25549;30;0&p=30&e=30&w=0&f=25550-25579", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25550-25579&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -3.70496 1.0 1.2 -3.08746666667 -8.90044 5.19548 NA 0.0174377340062 0.0174377340062 NA 0.984346410549 0.0174377340062 0.4 0.857142857143 0.766666666667 NC_045512.2:29606-29677 - 29606 29677 24 Maximal UUG NearCognate ORF10 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29605;72;0&s=-&p=30&e=30&w=0&f=29606-29677-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29606-29677&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -3.71476666667 0.98 0.283453303802 -13.1053920235 -3.4483 -0.26646666667 NA 0.979977209832 0.094488035162 NA 0.979977209832 0.094488035162 0.347222222222 0.467532467532 0.0 NC_045512.2:20188-20217 - 20188 20217 10 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20187;30;0&s=-&p=30&e=30&w=0&f=20188-20217-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20188-20217&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -3.71924 1.0 1.33333333333 -2.78943 -11.72172 8.00248 NA 0.364759889305 1.0 NA 0.364759889305 0.364759889305 0.333333333333 0.0 0.0 NC_045512.2:28984-29013 + 28984 29013 10 Maximal AGG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28983;30;0&p=30&e=30&w=0&f=28984-29013", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28984-29013&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -3.71942 0.9907 0.703211912453 -5.28918798748 -6.58025 2.86083 NA 0.701246947745 1.0 NA 0.706439850236 0.701246947745 0.5 0.0 0.0 NC_045512.2:26450-26515 - 26450 26515 22 Maximal AUU NearCognate E =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26449;66;0&s=-&p=30&e=30&w=0&f=26450-26515-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26450-26515&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -3.72732727273 0.9522 0.424977551918 -8.77064507503 -6.63869090909 2.91136363636 NA 0.094488035162 0.994966628683 NA 0.477942373433 0.094488035162 0.287878787879 0.733333333333 0.0 NC_045512.2:12-53 + 12 53 14 NotMaximal AUA NearCognate =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;11;42;0&p=11&e=30&w=0&f=12-53", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12-53&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -3.78903571429 0.7838 0.768553653249 -4.93008614073 -4.25825 0.46921428571 NA 0.633107602149 0.549256063812 NA 0.0 0.0 0.428571428571 0.75 0.0 NC_045512.2:13362-13532 - 13362 13532 57 NotMaximal ACG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13361;171;0&s=-&p=30&e=30&w=0&f=13362-13532-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13362-13532&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -3.81560701754 1.0 0.520467836257 -7.33111011235 -4.58829649123 0.772689473688 NA 1.0 1.0 NA 1.0 1.0 0.502923976608 1.0222826087 1.0 NC_045512.2:183-233 + 183 233 17 Maximal CUG NearCognate =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;182;51;0&p=30&e=30&w=0&f=183-233", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:183-233&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -3.81904705882 0.9788 0.46074430118 -8.2888644505 -4.28113529412 0.462088235298 NA 0.953514569429 0.978808399805 NA 0.978808399805 0.953514569429 0.56862745098 0.980769230769 0.0 NC_045512.2:28911-28952 + 28911 28952 14 NotMaximal AUG Canonical N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28910;42;0&p=30&e=30&w=0&f=28911-28952", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28911-28952&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -3.82774285714 0.9958 1.1497398124 -3.3292252872 -2.45952142857 -1.36822142857 0.094488035162 0.979550708123 0.0174377340062 0.0174377340062 0.390053719681 0.0174377340062 0.52380952381 0.358974358974 0.0 NC_045512.2:143-175 - 143 175 11 Maximal ACG NearCognate =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;142;33;0&s=-&p=30&e=30&w=0&f=143-175-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:143-175&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -3.83496363636 0.9771 0.469969457634 -8.16002736788 -5.29770909091 1.46274545455 NA 0.094488035162 0.094488035162 NA 0.978808399805 0.094488035162 0.454545454545 1.76785714286 0.0 NC_045512.2:27037-27096 - 27037 27096 20 NotMaximal CUG NearCognate M =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27036;60;0&s=-&p=30&e=30&w=0&f=27037-27096-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27037-27096&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -3.840065 0.9999 0.566666666667 -6.77658529412 -6.36034 2.520275 NA 1.0 0.996060556731 NA 1.0 0.996060556731 0.483333333333 1.14285714286 0.9 NC_045512.2:26149-26226 - 26149 26226 26 NotMaximal UUG NearCognate ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26148;78;0&s=-&p=30&e=30&w=0&f=26149-26226-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26149-26226&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -3.84898461538 0.9548 0.44754924083 -8.60013662014 -6.15173846154 2.30275384616 NA 0.452648543057 0.297567963536 NA 1.0 0.0174377340062 0.435897435897 1.34948096886 0.884615384615 NC_045512.2:26149-26232 - 26149 26232 28 NotMaximal AUC NearCognate ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26148;84;0&s=-&p=30&e=30&w=0&f=26149-26232-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26149-26232&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -3.85858928571 0.9546 0.503861779385 -7.65803131649 -5.756175 1.89758571429 NA 0.452648543057 0.297567963536 NA 0.094488035162 0.0174377340062 0.440476190476 1.22807017544 0.821428571429 NC_045512.2:6356-6394 - 6356 6394 13 Maximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6355;39;0&s=-&p=30&e=30&w=0&f=6356-6394-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6356-6394&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -3.87790769231 0.9813 0.653241891804 -5.93640386657 -4.97242307692 1.09451538461 NA 0.477942373433 1.0 NA 0.0174377340062 0.0174377340062 0.538461538462 1.19387755102 1.0 NC_045512.2:29511-29567 + 29511 29567 19 Maximal GUG NearCognate N,ORF10 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29510;57;0&p=30&e=30&w=0&f=29511-29567", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29511-29567&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -3.88754736842 0.9916 0.500223998907 -7.77161307118 -2.41033157895 -1.47721578947 NA 0.979977209832 0.390053719681 NA 0.0174377340062 0.0174377340062 0.508771929825 0.0 0.0 NC_045512.2:29671-29709 + 29671 29709 13 Maximal AUA NearCognate ORF10 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29670;39;0&p=30&e=30&w=0&f=29671-29709", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29671-29709&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -3.91654615385 0.9765 0.393470485327 -9.95384990718 -3.33239230769 -0.584153846158 NA 0.674129903956 0.85809539313 NA 0.979977209832 0.674129903956 0.358974358974 0.0 0.0 NC_045512.2:26149-26214 - 26149 26214 22 NotMaximal AGG NearCognate ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26148;66;0&s=-&p=30&e=30&w=0&f=26149-26214-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26149-26214&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -3.92725 0.9466 0.468315769466 -8.38590168441 -6.94730454545 3.02005454545 NA 0.452648543057 0.297567963536 NA 1.0 0.0174377340062 0.454545454545 1.46666666667 1.0 NC_045512.2:3237-3299 + 3237 3299 21 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3236;63;0&p=30&e=30&w=0&f=3237-3299", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3237-3299&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -3.93972857143 0.2373 6.15266794529 -0.64032848944 -7.88369047619 3.94396190476 NA 0.0174377340062 0.623529220251 NA 0.364759889305 0.0174377340062 0.396825396825 0.403846153846 0.0 NC_045512.2:6360-6395 + 6360 6395 12 NotMaximal ACG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6359;36;0&p=30&e=30&w=0&f=6360-6395", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6360-6395&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -3.95149166667 0.9813 0.622757270186 -6.34515541744 -2.679775 -1.27171666667 NA 0.094488035162 1.0 NA 0.44354875468 0.0 0.527777777778 1.22727272727 1.0 NC_045512.2:15471-15509 + 15471 15509 13 Maximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15470;39;0&p=30&e=30&w=0&f=15471-15509", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15471-15509&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -3.97403846154 1.0 1.05128205128 -3.78018292683 -17.2210769231 13.2470384615 NA 1.0 0.452648543057 NA 0.890405339411 0.343053882468 0.512820512821 0.0 0.0 NC_045512.2:27037-27087 - 27037 27087 17 NotMaximal CUG NearCognate M =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27036;51;0&s=-&p=30&e=30&w=0&f=27037-27087-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27037-27087&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -3.97622941176 0.9999 0.470588235294 -8.44948749999 -5.12694705882 1.15071764706 NA 1.0 0.996060556731 NA 0.368347712844 0.368347712844 0.470588235294 1.41666666667 0.882352941176 NC_045512.2:18799-18843 - 18799 18843 15 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18798;45;0&s=-&p=30&e=30&w=0&f=18799-18843-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18799-18843&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -3.98169333333 1.0 1.68888888889 -2.35758157895 -18.4949666667 14.5132733333 0.816298225623 0.0174377340062 1.0 0.0174377340062 1.0 0.0174377340062 0.4 0.0 0.0 NC_045512.2:18799-18858 - 18799 18858 20 Maximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18798;60;0&s=-&p=30&e=30&w=0&f=18799-18858-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18799-18858&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -4.025865 1.0 1.35 -2.98212222222 -16.991045 12.96518 NA 0.0174377340062 1.0 NA 0.99726517988 0.0174377340062 0.4 0.0 0.25 NC_045512.2:28409-28450 - 28409 28450 14 Maximal AUG Canonical N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28408;42;0&s=-&p=30&e=30&w=0&f=28409-28450-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28409-28450&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -4.06311428571 1.0 0.333333333333 -12.1893428571 -4.63245 0.56933571429 0.993661077649 0.706439850236 1.0 0.700100927885 1.0 0.706439850236 0.47619047619 1.12 0.0 NC_045512.2:26120-26167 + 26120 26167 16 NotMaximal AUG Canonical ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26119;48;0&p=30&e=30&w=0&f=26120-26167", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26120-26167&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -4.0932125 0.9755 0.5 -8.186425 -7.74025 3.6470375 0.706439850236 0.288383525965 0.307354712681 0.0 0.890405339411 0.0 0.4375 1.33333333333 1.0 NC_045512.2:3255-3299 + 3255 3299 15 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3254;45;0&p=30&e=30&w=0&f=3255-3299", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3255-3299&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -4.10453333333 0.1777 7.40467165246 -0.554316724086 -8.71548 4.61094666667 NA 0.0174377340062 0.739212111346 NA 0.383965489175 0.0174377340062 0.333333333333 0.0 0.0 NC_045512.2:11342-11374 - 11342 11374 11 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;11341;33;0&s=-&p=30&e=30&w=0&f=11342-11374-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:11342-11374&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -4.1474 1.0 0.848484848485 -4.88800714286 -11.1883 7.0409 NA 0.094488035162 1.0 NA 1.0 0.094488035162 0.363636363636 0.0 0.0 NC_045512.2:3249-3299 + 3249 3299 17 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3248;51;0&p=30&e=30&w=0&f=3249-3299", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3249-3299&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -4.15549411765 0.2019 6.94206725872 -0.598596061199 -8.33131764706 4.17582352941 NA 0.0174377340062 0.739212111346 NA 0.383965489175 0.0174377340062 0.352941176471 0.0 0.0 NC_045512.2:9679-9735 + 9679 9735 19 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9678;57;0&p=30&e=30&w=0&f=9679-9735", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9679-9735&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -4.16815789474 1.0 1.24561403509 -3.34626760564 -11.3411210526 7.17296315789 NA 0.890405339411 0.706439850236 NA 1.0 0.706439850236 0.298245614035 0.0 0.0 NC_045512.2:6155-6187 - 6155 6187 11 Maximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6154;33;0&s=-&p=30&e=30&w=0&f=6155-6187-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6155-6187&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -4.17833636364 0.9813 0.463207886915 -9.02043441329 -7.06538181818 2.88704545454 NA 0.094488035162 1.0 NA 0.981299039557 0.094488035162 0.363636363636 0.0 1.0 NC_045512.2:29210-29413 - 29210 29413 68 Maximal UUG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29209;204;0&s=-&p=30&e=30&w=0&f=29210-29413-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29210-29413&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -4.18148823529 1.0 0.666666666667 -6.27223235294 -8.78029705882 4.59880882353 NA 0.364759889305 0.385043138532 NA 1.0 0.364759889305 0.426470588235 0.754756871036 0.0 NC_045512.2:28587-28640 - 28587 28640 18 Maximal AGG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28586;54;0&s=-&p=30&e=30&w=0&f=28587-28640-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28587-28640&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -4.23528888889 1.0 0.740740740741 -5.71764 -5.23288333333 0.997594444443 NA 0.890405339411 1.0 NA 0.99726517988 0.88767051929 0.5 0.0 0.0 NC_045512.2:28409-28582 - 28409 28582 58 NotMaximal AUC NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28408;174;0&s=-&p=30&e=30&w=0&f=28409-28582-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28409-28582&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -4.29199827586 1.0 0.666666666667 -6.43799741379 -5.57656896552 1.28457068966 NA 0.706439850236 1.0 NA 0.0174377340062 0.0174377340062 0.465517241379 0.855036855037 0.172413793103 NC_045512.2:29677-29709 + 29677 29709 11 NotMaximal AUC NearCognate =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29676;33;0&p=30&e=30&w=0&f=29677-29709", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29677-29709&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -4.32651818182 0.9759 0.465010573568 -9.30412861071 -3.64773636364 -0.678781818184 NA 0.674129903956 0.85809539313 NA 0.952817841446 0.630815562429 0.363636363636 0.0 0.0 NC_045512.2:25513-25602 - 25513 25602 30 Maximal UUG NearCognate ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25512;90;0&s=-&p=30&e=30&w=0&f=25513-25602-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25513-25602&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -4.32716666667 1.0 1.38888888889 -3.11556 -5.6029 1.27573333333 NA 0.605215692658 0.667875630799 NA 1.0 0.591945303598 0.444444444444 0.681818181818 0.666666666667 NC_045512.2:29514-29567 + 29514 29567 18 NotMaximal CUG NearCognate N,ORF10 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29513;54;0&p=30&e=30&w=0&f=29514-29567", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29514-29567&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -4.33685555556 0.9968 0.444822812846 -9.74962486256 -2.46575 -1.87110555556 NA 0.979977209832 0.477942373433 NA 0.869956047534 0.368347712844 0.5 0.0 0.0 NC_045512.2:11663-11701 - 11663 11701 13 Maximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;11662;39;0&s=-&p=30&e=30&w=0&f=11663-11701-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:11663-11701&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -4.34972307692 1.0 0.692307692308 -6.28293333333 -10.8005461538 6.45082307693 NA 0.979550708123 0.912111346248 NA 0.362428780726 0.362428780726 0.410256410256 0.619047619048 0.0 NC_045512.2:29420-29455 - 29420 29455 12 NotMaximal AAG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29419;36;0&s=-&p=30&e=30&w=0&f=29420-29455-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29420-29455&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -4.35169166667 0.9939 0.724435496439 -6.00701054554 -8.819425 4.46773333333 NA 0.680192088556 1.0 NA 0.706439850236 0.680192088556 0.472222222222 0.5 0.0 NC_045512.2:27096-27134 - 27096 27134 13 Maximal AUA NearCognate M =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27095;39;0&s=-&p=30&e=30&w=0&f=27096-27134-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27096-27134&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -4.37146153846 1.0 0.948717948718 -4.60775675676 -11.2336230769 6.86216153846 NA 1.0 1.0 NA 0.553416897281 0.553416897281 0.461538461538 0.4875 0.615384615385 NC_045512.2:29232-29264 + 29232 29264 11 NotMaximal UUG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29231;33;0&p=30&e=30&w=0&f=29232-29264", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29232-29264&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -4.37550909091 1.0 0.424242424242 -10.3137 -3.1364 -1.23910909091 NA 0.890405339411 0.912111346248 NA 0.907077974931 0.701406478919 0.545454545455 0.857142857143 0.0 NC_045512.2:28409-28600 - 28409 28600 64 Maximal AUA NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28408;192;0&s=-&p=30&e=30&w=0&f=28409-28600-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28409-28600&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -4.3776234375 1.0 0.682291666667 -6.41605877863 -5.592440625 1.2148171875 NA 0.706439850236 1.0 NA 0.382200879049 0.382200879049 0.463541666667 0.780487804878 0.15625 NC_045512.2:28409-28447 - 28409 28447 13 NotMaximal UUG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28408;39;0&s=-&p=30&e=30&w=0&f=28409-28447-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28409-28447&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -4.37827692308 1.0 0.333333333333 -13.1348307692 -4.83139230769 0.453115384612 NA 0.706439850236 1.0 NA 1.0 0.706439850236 0.487179487179 1.11428571429 0.0 NC_045512.2:6357-6395 + 6357 6395 13 Maximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6356;39;0&p=30&e=30&w=0&f=6357-6395", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6357-6395&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -4.39240769231 0.9813 0.653241891804 -6.7240141017 -3.00284615385 -1.38956153846 NA 0.094488035162 1.0 NA 0.956005209181 0.0174377340062 0.538461538462 1.125 1.0 NC_045512.2:26253-26285 + 26253 26285 11 Maximal AUU NearCognate E =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26252;33;0&p=30&e=30&w=0&f=26253-26285", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26253-26285&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -4.39692727273 1.0 0.363636363636 -12.09155 -8.47772727273 4.0808 NA 1.0 1.0 NA 1.0 1.0 0.393939393939 2.75 0.0 NC_045512.2:11102-11158 - 11102 11158 19 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;11101;57;0&s=-&p=30&e=30&w=0&f=11102-11158-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:11102-11158&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -4.39810526316 1.0 1.0701754386 -4.10970491803 -11.8913578947 7.49325263158 0.997646101253 0.355660100928 0.966882630636 0.355660100928 1.0 0.355660100928 0.350877192982 0.0 0.0 NC_045512.2:28409-28558 - 28409 28558 50 NotMaximal ACG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28408;150;0&s=-&p=30&e=30&w=0&f=28409-28558-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28409-28558&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -4.413406 1.0 0.7 -6.30486571429 -5.775778 1.362372 NA 0.706439850236 1.0 NA 1.0 0.706439850236 0.473333333333 0.872093023256 0.14 NC_045512.2:3240-3299 + 3240 3299 20 NotMaximal ACG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3239;60;0&p=30&e=30&w=0&f=3240-3299", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3240-3299&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -4.456005 0.2296 6.37484302834 -0.698998387911 -8.30405 3.848045 NA 0.0174377340062 0.623529220251 NA 0.390053719681 0.0174377340062 0.4 0.41958041958 0.0 NC_045512.2:29210-29335 - 29210 29335 42 NotMaximal AUU NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29209;126;0&s=-&p=30&e=30&w=0&f=29210-29335-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29210-29335&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -4.45861904762 1.0 0.857142857143 -5.20172222222 -9.52914285714 5.07052380952 NA 0.364759889305 0.385043138532 NA 0.854699658147 0.364759889305 0.452380952381 0.933333333333 0.0 NC_045512.2:26111-26167 + 26111 26167 19 NotMaximal CUG NearCognate ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26110;57;0&p=30&e=30&w=0&f=26111-26167", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26111-26167&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -4.46085263158 0.9462 1.20052021549 -3.7157663603 -8.50811052632 4.04725789474 NA 0.288383525965 0.307354712681 NA 0.094488035162 0.0 0.438596491228 1.11038961039 0.912280701754 NC_045512.2:19477-19521 - 19477 19521 15 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19476;45;0&s=-&p=30&e=30&w=0&f=19477-19521-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19477-19521&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -4.46813333333 1.0 1.15555555556 -3.86665384615 -16.8523466667 12.3842133333 NA 0.589750936025 1.0 NA 0.546661240436 0.343053882468 0.422222222222 0.0 0.0 NC_045512.2:29210-29308 - 29210 29308 33 NotMaximal AUU NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29209;99;0&s=-&p=30&e=30&w=0&f=29210-29308-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29210-29308&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -4.47465151515 1.0 0.666666666667 -6.71197727272 -8.53695151515 4.0623 NA 0.364759889305 0.385043138532 NA 0.890405339411 0.0174377340062 0.494949494949 0.993311036789 0.0 NC_045512.2:29210-29404 - 29210 29404 65 NotMaximal AUC NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29209;195;0&s=-&p=30&e=30&w=0&f=29210-29404-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29210-29404&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -4.48127538462 1.0 0.666666666667 -6.72191307693 -9.15548461538 4.67420923076 NA 0.364759889305 0.385043138532 NA 1.0 0.364759889305 0.430769230769 0.77380952381 0.0 NC_045512.2:13362-13517 - 13362 13517 52 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13361;156;0&s=-&p=30&e=30&w=0&f=13362-13517-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13362-13517&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -4.48822692308 1.0 0.50641025641 -8.86282784811 -5.35085 0.86262307692 NA 1.0 1.0 NA 0.890405339411 0.890405339411 0.512820512821 0.977443609023 1.0 NC_045512.2:29210-29302 - 29210 29302 31 NotMaximal AUC NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29209;93;0&s=-&p=30&e=30&w=0&f=29210-29302-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29210-29302&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -4.52632903226 1.0 0.645161290323 -7.01581 -8.66554516129 4.13921612903 NA 0.364759889305 0.385043138532 NA 0.912111346248 0.364759889305 0.505376344086 1.02197802198 0.0 NC_045512.2:13362-13511 - 13362 13511 50 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13361;150;0&s=-&p=30&e=30&w=0&f=13362-13511-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13362-13511&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -4.537604 1.0 0.493333333333 -9.19784594595 -5.727112 1.189508 NA 1.0 1.0 NA 0.993911769494 0.993911769494 0.506666666667 1.04166666667 1.0 NC_045512.2:9242-9283 - 9242 9283 14 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9241;42;0&s=-&p=30&e=30&w=0&f=9242-9283-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9242-9283&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -4.53895714286 1.0 1.07142857143 -4.23636 -9.08470714286 4.54575 NA 0.890405339411 0.694598730262 NA 1.0 0.585004069673 0.428571428571 0.0 0.0 NC_045512.2:29210-29377 - 29210 29377 56 NotMaximal AGG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29209;168;0&s=-&p=30&e=30&w=0&f=29210-29377-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29210-29377&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -4.57395 1.0 0.738095238095 -6.19696451613 -9.90868571429 5.33473571429 NA 0.364759889305 0.385043138532 NA 1.0 0.364759889305 0.446428571429 0.84 0.0 NC_045512.2:29210-29341 - 29210 29341 44 Maximal AUG Canonical N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29209;132;0&s=-&p=30&e=30&w=0&f=29210-29341-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29210-29341&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -4.60544090909 1.0 0.840909090909 -5.47674054054 -10.4951340909 5.88969318182 0.260866026371 0.364759889305 0.385043138532 0.0 1.0 0.364759889305 0.44696969697 0.912442396313 0.0 NC_045512.2:28259-28306 - 28259 28306 16 Maximal AUU NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28258;48;0&s=-&p=30&e=30&w=0&f=28259-28306-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28259-28306&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -4.65625 0.9536 1.14042093178 -4.08292225288 -5.90253125 1.24628125 NA 0.618326550545 0.59356666124 NA 0.452648543057 0.0174377340062 0.354166666667 1.37142857143 0.0 NC_045512.2:11663-11698 - 11663 11698 12 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;11662;36;0&s=-&p=30&e=30&w=0&f=11663-11698-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:11663-11698&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -4.68040833333 1.0 0.638888888889 -7.32585652173 -11.8027333333 7.122325 NA 0.979550708123 0.912111346248 NA 0.966882630636 0.858544685007 0.416666666667 0.666666666667 0.0 NC_045512.2:17014-17046 - 17014 17046 11 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17013;33;0&s=-&p=30&e=30&w=0&f=17014-17046-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17014-17046&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -4.7119 1.0 0.818181818182 -5.75898888889 -17.0269 12.315 NA 0.770727657496 1.0 NA 1.0 0.770727657496 0.30303030303 0.0 0.818181818182 NC_045512.2:29397-29447 + 29397 29447 17 NotMaximal AGG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29396;51;0&p=30&e=30&w=0&f=29397-29447", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29397-29447&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -4.71501764706 0.9957 0.707444664153 -6.66485717679 -3.5635 -1.15151764706 NA 0.890405339411 1.0 NA 0.477942373433 0.368347712844 0.470588235294 0.354166666667 0.0 NC_045512.2:12830-12901 - 12830 12901 24 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12829;72;0&s=-&p=30&e=30&w=0&f=12830-12901-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12830-12901&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -4.73679166667 1.0 0.763888888889 -6.2008909091 -10.540075 5.80328333333 NA 0.0174377340062 0.890405339411 NA 0.912111346248 0.0174377340062 0.430555555556 0.0 0.625 NC_045512.2:5-58 - 5 58 18 Maximal AUC NearCognate =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4;54;0&s=-&p=30&e=4&w=0&f=5-58-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5-58&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -4.74255555556 0.7933 0.778151816075 -6.09464047707 -7.24781111111 2.50525555555 NA 0.0 0.482490639753 NA 0.843265505453 0.0 0.388888888889 0.551020408163 0.0 NC_045512.2:12830-12925 - 12830 12925 32 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12829;96;0&s=-&p=30&e=30&w=0&f=12830-12925-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12830-12925&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -4.746390625 1.0 0.666666666667 -7.1195859375 -9.298509375 4.55211875 NA 0.0174377340062 0.890405339411 NA 0.246075207553 0.0174377340062 0.427083333333 0.0 0.71875 NC_045512.2:29210-29320 - 29210 29320 37 NotMaximal UUG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29209;111;0&s=-&p=30&e=30&w=0&f=29210-29320-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29210-29320&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -4.75312702703 1.0 0.720720720721 -6.59496375 -9.06241621622 4.30928918919 NA 0.364759889305 0.385043138532 NA 0.530675565685 0.364759889305 0.468468468468 0.986666666667 0.0 NC_045512.2:29210-29317 - 29210 29317 36 NotMaximal AUC NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29209;108;0&s=-&p=30&e=30&w=0&f=29210-29317-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29210-29317&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -4.75686666667 1.0 0.675925925926 -7.03755616439 -8.87103333333 4.11416666666 NA 0.364759889305 0.385043138532 NA 0.308696076835 0.0174377340062 0.472222222222 1.0 0.0 NC_045512.2:3246-3299 + 3246 3299 18 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3245;54;0&p=30&e=30&w=0&f=3246-3299", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3246-3299&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -4.77558888889 0.212 6.65285614172 -0.7178253651 -8.03402777778 3.25843888889 NA 0.0174377340062 0.629617450757 NA 0.0883998046557 0.0174377340062 0.37037037037 0.0 0.0 NC_045512.2:6-53 + 6 53 16 Maximal AGG NearCognate =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5;48;0&p=5&e=30&w=0&f=6-53", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6-53&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -4.78625 0.7876 0.774834618471 -6.17712462234 -5.19844375 0.41219375 NA 0.633107602149 0.540113950838 NA 0.798007488198 0.540113950838 0.416666666667 0.571428571429 0.0 NC_045512.2:29606-29665 - 29606 29665 20 NotMaximal AUU NearCognate ORF10 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29605;60;0&s=-&p=30&e=30&w=0&f=29606-29665-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29606-29665&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -4.79144 0.98 0.27211517165 -17.6081325085 -4.67198 -0.11946 NA 0.979977209832 0.094488035162 NA 0.979977209832 0.094488035162 0.333333333333 0.6 0.0 NC_045512.2:28865-28960 - 28865 28960 32 NotMaximal CUG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28864;96;0&s=-&p=30&e=30&w=0&f=28865-28960-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28865-28960&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -4.815196875 0.9973 1.00401489057 -4.79594169394 -6.19525625 1.380059375 NA 0.99467686798 0.0174377340062 NA 1.0 0.0174377340062 0.541666666667 0.143928035982 0.0 NC_045512.2:27037-27072 - 27037 27072 12 NotMaximal AAG NearCognate M =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27036;36;0&s=-&p=30&e=30&w=0&f=27037-27072-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27037-27072&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -4.83785833333 1.0 0.416666666667 -11.61086 -2.95376666667 -1.88409166666 NA 1.0 1.0 NA 1.0 1.0 0.388888888889 1.5 0.888888888889 NC_045512.2:26114-26167 + 26114 26167 18 NotMaximal AAG NearCognate ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26113;54;0&p=30&e=30&w=0&f=26114-26167", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26114-26167&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -4.84751111111 0.9666 1.03703703704 -4.67438571428 -9.13013888889 4.28262777778 NA 0.288383525965 0.094488035162 NA 0.368347712844 0.0 0.425925925926 1.24615384615 0.962962962963 NC_045512.2:11342-11371 - 11342 11371 10 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;11341;30;0&s=-&p=30&e=30&w=0&f=11342-11371-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:11342-11371&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -4.86424 1.0 0.933333333333 -5.21168571429 -12.72517 7.86093 NA 0.094488035162 1.0 NA 0.890405339411 0.094488035162 0.366666666667 0.0 0.0 NC_045512.2:29400-29447 + 29400 29447 16 NotMaximal CUG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29399;48;0&p=30&e=30&w=0&f=29400-29447", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29400-29447&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -4.9254125 0.9954 0.730826622329 -6.73950886505 -4.07565 -0.8497625 NA 0.890405339411 1.0 NA 1.0 0.890405339411 0.458333333333 0.4 0.0 NC_045512.2:28259-28300 - 28259 28300 14 NotMaximal CUG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28258;42;0&s=-&p=30&e=30&w=0&f=28259-28300-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28259-28300&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -4.92555714286 0.947 1.16048106489 -4.24440974686 -4.81448571429 -0.111071428574 NA 0.618326550545 0.59356666124 NA 0.706439850236 0.563060393944 0.357142857143 0.777777777778 0.0 NC_045512.2:26709-26744 - 26709 26744 12 NotMaximal AUU NearCognate M =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26708;36;0&s=-&p=30&e=30&w=0&f=26709-26744-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26709-26744&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -4.95295 1.0 0.611111111111 -8.10482727273 -12.552375 7.599425 NA 0.368347712844 1.0 NA 0.649503499919 0.0174377340062 0.361111111111 0.0 0.75 NC_045512.2:372-422 + 372 422 17 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;371;51;0&p=30&e=30&w=0&f=372-422", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:372-422&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -4.96340588235 1.0 1.23529411765 -4.01799523809 -5.208 0.24459411765 NA 0.681933908514 0.44924304086 NA 1.0 0.44924304086 0.470588235294 0.364285714286 0.0 NC_045512.2:29210-29293 - 29210 29293 28 NotMaximal AUC NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29209;84;0&s=-&p=30&e=30&w=0&f=29210-29293-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29210-29293&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -4.9679 1.0 0.630952380952 -7.87365283019 -8.36451785714 3.39661785714 NA 0.364759889305 0.385043138532 NA 1.0 0.364759889305 0.52380952381 1.05 0.0 NC_045512.2:26925-26984 - 26925 26984 20 NotMaximal GUG NearCognate M =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26924;60;0&s=-&p=30&e=30&w=0&f=26925-26984-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26925-26984&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -4.97949 1.0 0.883333333333 -5.63715849057 -11.600005 6.620515 NA 0.094488035162 0.869956047534 NA 1.0 0.094488035162 0.483333333333 1.15384615385 0.0 NC_045512.2:29382-29447 + 29382 29447 22 NotMaximal AGG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29381;66;0&p=30&e=30&w=0&f=29382-29447", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29382-29447&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -5.01068181818 0.9966 0.622419361694 -8.05033089675 -4.28873181818 -0.721949999998 NA 0.890405339411 1.0 NA 1.0 0.890405339411 0.439393939394 0.317307692308 0.0 NC_045512.2:14002-14034 - 14002 14034 11 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14001;33;0&s=-&p=30&e=30&w=0&f=14002-14034-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14002-14034&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -5.01883636364 1.0 0.818181818182 -6.13413333334 -8.39694545455 3.37810909091 NA 0.825118020511 1.0 NA 0.99266156601 0.825118020511 0.363636363636 0.916666666667 0.0 NC_045512.2:12830-12934 - 12830 12934 35 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12829;105;0&s=-&p=30&e=30&w=0&f=12830-12934-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12830-12934&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -5.03255714286 1.0 0.685714285714 -7.33914583334 -9.74368 4.71112285714 NA 0.0174377340062 0.890405339411 NA 1.0 0.0174377340062 0.428571428571 0.0 0.742857142857 NC_045512.2:27141-27188 - 27141 27188 16 Maximal CUG NearCognate M =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27140;48;0&s=-&p=30&e=30&w=0&f=27141-27188-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27141-27188&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -5.069125 1.0 0.708333333333 -7.15641176471 -9.42300625 4.35388125 NA 1.0 0.094488035162 NA 1.0 0.094488035162 0.416666666667 0.0 0.6875 NC_045512.2:28920-28952 + 28920 28952 11 NotMaximal AUG Canonical N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28919;33;0&p=30&e=30&w=0&f=28920-28952", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28920-28952&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -5.09160909091 1.0 1.15151515152 -4.42166052632 -3.0707 -2.02090909091 0.0174377340062 0.979550708123 0.0174377340062 0.0174377340062 0.343053882468 0.0174377340062 0.484848484848 0.0 0.0 NC_045512.2:11342-11422 - 11342 11422 27 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;11341;81;0&s=-&p=30&e=30&w=0&f=11342-11422-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:11342-11422&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -5.10702222222 1.0 0.938271604938 -5.44301052631 -12.7172037037 7.61018148148 NA 0.094488035162 1.0 NA 0.492915513593 0.094488035162 0.407407407407 0.321428571429 0.0 NC_045512.2:24854-24886 - 24854 24886 11 NotMaximal AUU NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24853;33;0&s=-&p=30&e=30&w=0&f=24854-24886-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24854-24886&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -5.13044545455 1.0 1.15151515152 -4.45538684211 -16.3903 11.2598545455 NA 0.0174377340062 1.0 NA 0.866075207553 0.0174377340062 0.393939393939 0.0 0.909090909091 NC_045512.2:13222-13281 + 13222 13281 20 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13221;60;0&p=30&e=30&w=0&f=13222-13281", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13222-13281&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -5.16465 1.0 0.8 -6.4558125 -12.182895 7.018245 NA 1.0 0.364759889305 NA 0.282174833143 0.0174377340062 0.483333333333 0.576923076923 0.45 NC_045512.2:28865-29005 - 28865 29005 47 NotMaximal UUG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28864;141;0&s=-&p=30&e=30&w=0&f=28865-29005-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28865-29005&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -5.26424042553 0.9961 0.911218346581 -5.77714490197 -6.05243829787 0.788197872342 NA 0.99467686798 0.0174377340062 NA 1.0 0.0174377340062 0.510638297872 0.109557109557 0.0 NC_045512.2:28587-28625 - 28587 28625 13 NotMaximal CUG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28586;39;0&s=-&p=30&e=30&w=0&f=28587-28625-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28587-28625&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -5.26556153846 1.0 0.820512820513 -6.417403125 -5.42065384615 0.155092307694 NA 0.890405339411 1.0 NA 1.0 0.890405339411 0.487179487179 0.0 0.0 NC_045512.2:11102-11164 - 11102 11164 21 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;11101;63;0&s=-&p=30&e=30&w=0&f=11102-11164-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:11102-11164&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -5.32146666667 1.0 1.06349206349 -5.00376716418 -11.242052381 5.92058571428 0.778346084975 0.355660100928 0.966882630636 0.355660100928 1.0 0.355660100928 0.349206349206 0.0 0.0 NC_045512.2:5-52 - 5 52 16 NotMaximal AAG NearCognate =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4;48;0&s=-&p=30&e=4&w=0&f=5-52-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5-52&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -5.32516875 0.787 0.826009704409 -6.4468597906 -6.80480625 1.4796375 NA 0.0 0.482490639753 NA 0.843265505453 0.0 0.395833333333 0.685714285714 0.0 NC_045512.2:29343-29447 + 29343 29447 35 NotMaximal UUG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29342;105;0&p=30&e=30&w=0&f=29343-29447", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29343-29447&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -5.32988571429 0.9979 0.51504455116 -10.3483974392 -4.32854 -1.00134571429 NA 0.890405339411 1.0 NA 1.0 0.890405339411 0.428571428571 0.42 0.0 NC_045512.2:29403-29447 + 29403 29447 15 Maximal AUG Canonical N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29402;45;0&p=30&e=30&w=0&f=29403-29447", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29403-29447&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -5.33901333333 0.9951 0.779548397151 -6.84885422489 -4.55866666667 -0.780346666663 1.0 0.890405339411 1.0 0.890405339411 1.0 0.890405339411 0.444444444444 0.454545454545 0.0 NC_045512.2:7429-7476 + 7429 7476 16 Maximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7428;48;0&p=30&e=30&w=0&f=7429-7476", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7429-7476&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -5.346775 1.0 1.27083333333 -4.20729836066 -17.64868125 12.30190625 NA 0.0 0.706439850236 NA 0.094488035162 0.0 0.3125 1.33333333333 0.0 NC_045512.2:10586-10630 - 10586 10630 15 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10585;45;0&s=-&p=30&e=30&w=0&f=10586-10630-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10586-10630&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -5.34864666667 1.0 0.8 -6.68580833334 -12.3728866667 7.02424 NA 0.706439850236 1.0 NA 1.0 0.706439850236 0.4 0.0 0.0 NC_045512.2:29346-29447 + 29346 29447 34 NotMaximal ACG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29345;102;0&p=30&e=30&w=0&f=29346-29447", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29346-29447&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -5.36002647059 0.9978 0.530192920312 -10.1095775995 -4.49181176471 -0.868214705884 NA 0.890405339411 1.0 NA 1.0 0.890405339411 0.43137254902 0.429473684211 0.0 NC_045512.2:375-422 + 375 422 16 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;374;48;0&p=30&e=30&w=0&f=375-422", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:375-422&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -5.37466875 1.0 1.29166666667 -4.16103387097 -3.8594125 -1.51525625 NA 0.681933908514 0.44924304086 NA 1.0 0.44924304086 0.458333333333 0.4 0.0 NC_045512.2:26450-26488 - 26450 26488 13 NotMaximal AUA NearCognate E =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26449;39;0&s=-&p=30&e=30&w=0&f=26450-26488-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26450-26488&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -5.37723076923 0.9667 0.435897435897 -12.336 -8.84928461538 3.47205384615 NA 0.094488035162 0.094488035162 NA 0.094488035162 0.094488035162 0.333333333333 0.928571428571 0.0 NC_045512.2:19477-19527 - 19477 19527 17 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19476;51;0&s=-&p=30&e=30&w=0&f=19477-19527-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19477-19527&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -5.39077058824 1.0 1.21568627451 -4.43434354839 -17.9134176471 12.5226470588 NA 0.589750936025 0.384258505616 NA 1.0 0.319540940908 0.43137254902 0.455357142857 0.0 NC_045512.2:11342-11440 - 11342 11440 33 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;11341;99;0&s=-&p=30&e=30&w=0&f=11342-11440-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:11342-11440&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -5.4020030303 1.0 0.868686868687 -6.21858488372 -13.1867515152 7.78474848485 NA 0.094488035162 1.0 NA 1.0 0.094488035162 0.363636363636 0.34375 0.0 NC_045512.2:70-111 + 70 111 14 Maximal ACG NearCognate =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;69;42;0&p=30&e=30&w=0&f=70-111", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:70-111&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -5.41380714286 0.9521 0.590912708815 -9.16177137858 -6.10347857143 0.689671428569 NA 0.685248250041 0.834966628683 NA 0.860260459059 0.629295132671 0.47619047619 0.84 0.0 NC_045512.2:12219-12290 + 12219 12290 24 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12218;72;0&p=30&e=30&w=0&f=12219-12290", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12219-12290&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -5.41458333333 1.0 0.486111111111 -11.1385714286 -5.44410416667 0.0295208333367 1.0 1.0 0.88406641706 0.88406641706 1.0 0.88406641706 0.430555555556 0.631578947368 0.694444444444 NC_045512.2:28865-28963 - 28865 28963 33 NotMaximal AAG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28864;99;0&s=-&p=30&e=30&w=0&f=28865-28963-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28865-28963&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -5.42288484848 0.9973 1.02409524742 -5.29529344282 -5.89456969697 0.47168484849 NA 0.99467686798 0.0174377340062 NA 0.752352270877 0.0174377340062 0.535353535354 0.14224137931 0.0 NC_045512.2:13301-13441 - 13301 13441 47 Maximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13300;141;0&s=-&p=30&e=30&w=0&f=13301-13441-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13301-13441&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -5.42788510638 1.0 0.58865248227 -9.22086506024 -8.44805106383 3.02016595745 NA 0.0174377340062 1.0 NA 1.0 0.0174377340062 0.432624113475 0.60775862069 0.893617021277 NC_045512.2:7432-7476 + 7432 7476 15 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7431;45;0&p=30&e=30&w=0&f=7432-7476", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7432-7476&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -5.43433333333 1.0 1.2 -4.52861111111 -18.79796 13.3636266667 NA 0.0 0.706439850236 NA 0.254738727006 0.0 0.311111111111 1.875 0.0 NC_045512.2:28865-28999 - 28865 28999 45 NotMaximal UUG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28864;135;0&s=-&p=30&e=30&w=0&f=28865-28999-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28865-28999&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -5.44799111111 0.996 0.892457680504 -6.10448117611 -6.05147111111 0.603480000001 NA 0.99467686798 0.0174377340062 NA 0.99225459873 0.0174377340062 0.503703703704 0.117698343505 0.0 NC_045512.2:29606-29650 - 29606 29650 15 NotMaximal AUC NearCognate ORF10 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29605;45;0&s=-&p=30&e=30&w=0&f=29606-29650-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29606-29650&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -5.45080666667 0.98 0.317467700258 -17.169641706 -4.56989333333 -0.880913333337 NA 0.979977209832 0.979977209832 NA 0.390053719681 0.390053719681 0.377777777778 0.625 0.0 NC_045512.2:387-422 + 387 422 12 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;386;36;0&p=30&e=30&w=0&f=387-422", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:387-422&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -5.46818333333 1.0 1.08333333333 -5.04755384615 -5.88020833333 0.412025000003 NA 0.681933908514 0.574308969559 NA 1.0 0.574308969559 0.472222222222 0.5 0.0 NC_045512.2:27038-27088 + 27038 27088 17 Maximal AUC NearCognate M =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27037;51;0&p=30&e=30&w=0&f=27038-27088", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27038-27088&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -5.49229411765 0.9999 0.529411764706 -10.3743333333 -4.11608235294 -1.37621176471 NA 0.957919583266 0.992000651148 NA 0.994344782679 0.944265017093 0.470588235294 1.42657342657 0.882352941176 NC_045512.2:26450-26485 - 26450 26485 12 NotMaximal AUA NearCognate E =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26449;36;0&s=-&p=30&e=30&w=0&f=26450-26485-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26450-26485&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -5.50109166667 0.9952 0.472222222222 -11.6493705882 -9.44929166667 3.9482 NA 0.094488035162 0.890405339411 NA 0.868774214553 0.094488035162 0.361111111111 0.857142857143 0.0 NC_045512.2:28865-28990 - 28865 28990 42 NotMaximal UUG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28864;126;0&s=-&p=30&e=30&w=0&f=28865-28990-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28865-28990&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -5.50500952381 0.9957 0.916522118 -6.00641208291 -6.57251190476 1.06750238095 NA 0.99467686798 0.0174377340062 NA 0.906788214228 0.0174377340062 0.515873015873 0.121621621622 0.0 NC_045512.2:13708-13779 - 13708 13779 24 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13707;72;0&s=-&p=30&e=30&w=0&f=13708-13779-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13708-13779&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -5.51311666667 1.0 0.875 -6.30070476191 -10.190525 4.67740833333 0.838137717727 0.452648543057 1.0 0.364759889305 1.0 0.452648543057 0.388888888889 0.369230769231 0.541666666667 NC_045512.2:21556-21597 + 21556 21597 14 Maximal ACG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21555;42;0&p=30&e=30&w=0&f=21556-21597", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21556-21597&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -5.51431428571 0.992 5.81006295822 -0.949097165619 -16.5534357143 11.0391214286 NA 0.0174377340062 0.932629008628 NA 0.970284877096 0.0174377340062 0.333333333333 0.875 0.0 NC_045512.2:20767-20814 - 20767 20814 16 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20766;48;0&s=-&p=30&e=30&w=0&f=20767-20814-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20767-20814&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -5.517375 1.0 0.645833333333 -8.54303225806 -10.92135 5.403975 NA 0.364759889305 1.0 NA 1.0 0.364759889305 0.354166666667 0.666666666667 0.5625 NC_045512.2:26925-26972 - 26925 26972 16 NotMaximal ACG NearCognate M =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26924;48;0&s=-&p=30&e=30&w=0&f=26925-26972-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26925-26972&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -5.53075 1.0 1.02083333333 -5.41787755102 -11.57924375 6.04849375 NA 0.094488035162 0.869956047534 NA 0.477942373433 0.094488035162 0.479166666667 1.47692307692 0.0 NC_045512.2:14062-14145 - 14062 14145 28 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14061;84;0&s=-&p=30&e=30&w=0&f=14062-14145-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14062-14145&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -5.53268571429 1.0 1.13095238095 -4.89205894737 -15.1262821429 9.59359642857 NA 0.706439850236 0.873410385805 NA 0.993911769494 0.683356666124 0.404761904762 0.6 0.0 NC_045512.2:14062-14112 - 14062 14112 17 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14061;51;0&s=-&p=30&e=30&w=0&f=14062-14112-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14062-14112&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -5.53651764706 1.0 1.19607843137 -4.62889180328 -17.9189058824 12.3823882353 NA 0.706439850236 0.873410385805 NA 1.0 0.68944489663 0.333333333333 0.728571428571 0.0 NC_045512.2:28865-28996 - 28865 28996 44 NotMaximal UUG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28864;132;0&s=-&p=30&e=30&w=0&f=28865-28996-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28865-28996&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -5.53803863636 0.9959 0.890013536879 -6.22242067888 -6.21393181818 0.675893181822 NA 0.99467686798 0.0174377340062 NA 1.0 0.0174377340062 0.507575757576 0.118918918919 0.0 NC_045512.2:12830-12946 - 12830 12946 39 Maximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12829;117;0&s=-&p=30&e=30&w=0&f=12830-12946-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12830-12946&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -5.56814615385 1.0 0.683760683761 -8.14341375001 -9.39577948718 3.82763333333 NA 0.0174377340062 0.890405339411 NA 0.328728634218 0.0174377340062 0.410256410256 0.0 0.717948717949 NC_045512.2:9242-9289 - 9242 9289 16 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9241;48;0&s=-&p=30&e=30&w=0&f=9242-9289-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9242-9289&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -5.57224375 1.0 1.22916666667 -4.53335084746 -13.23581875 7.663575 NA 0.890405339411 0.694598730262 NA 0.958499104672 0.585004069673 0.395833333333 0.0 0.0 NC_045512.2:27946-27987 + 27946 27987 14 NotMaximal AAG NearCognate ORF8 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27945;42;0&p=30&e=30&w=0&f=27946-27987", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27946-27987&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -5.58277142857 0.6899 5.19389883922 -1.07487103646 -8.86107857143 3.27830714286 NA 0.094488035162 0.950652775517 NA 0.642025069184 0.094488035162 0.333333333333 0.0 0.0 NC_045512.2:11501-11560 - 11501 11560 20 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;11500;60;0&s=-&p=30&e=30&w=0&f=11501-11560-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:11501-11560&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -5.607155 1.0 0.533333333333 -10.513415625 -10.560445 4.95329 NA 0.493628520267 0.094488035162 NA 1.0 0.085388246785 0.366666666667 0.0 0.95 NC_045512.2:11342-11434 - 11342 11434 31 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;11341;93;0&s=-&p=30&e=30&w=0&f=11342-11434-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:11342-11434&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -5.63060322581 1.0 0.913978494624 -6.16054235295 -13.7530193548 8.12241612903 NA 0.094488035162 1.0 NA 0.99467686798 0.094488035162 0.365591397849 0.352272727273 0.0 NC_045512.2:28409-28465 - 28409 28465 19 NotMaximal AAG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28408;57;0&s=-&p=30&e=30&w=0&f=28409-28465-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28409-28465&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -5.6379 1.0 0.543859649123 -10.3664612903 -4.78315789474 -0.854742105263 NA 0.706439850236 1.0 NA 0.649770470454 0.649770470454 0.491228070175 0.633333333333 0.0 NC_045512.2:11342-11431 - 11342 11431 30 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;11341;90;0&s=-&p=30&e=30&w=0&f=11342-11431-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:11342-11431&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -5.64897666667 1.0 0.933333333333 -6.052475 -13.2508033333 7.60182666666 NA 0.094488035162 1.0 NA 0.565886374735 0.094488035162 0.377777777778 0.340909090909 0.0 NC_045512.2:29606-29644 - 29606 29644 13 NotMaximal UUG NearCognate ORF10 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29605;39;0&s=-&p=30&e=30&w=0&f=29606-29644-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29606-29644&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -5.65919230769 0.98 0.313979044212 -18.0241083347 -4.42081538462 -1.23837692307 NA 0.979977209832 0.979977209832 NA 0.979977209832 0.979977209832 0.384615384615 0.722222222222 0.0 NC_045512.2:28865-28993 - 28865 28993 43 NotMaximal UUG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28864;129;0&s=-&p=30&e=30&w=0&f=28865-28993-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28865-28993&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -5.66113953488 0.9958 0.902959588124 -6.26953809377 -6.35385581395 0.692716279073 NA 0.99467686798 0.0174377340062 NA 0.912111346248 0.0174377340062 0.511627906977 0.120223671948 0.0 NC_045512.2:13301-13438 - 13301 13438 46 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13300;138;0&s=-&p=30&e=30&w=0&f=13301-13438-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13301-13438&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -5.67391521739 1.0 0.586956521739 -9.66667037037 -8.5166 2.84268478261 NA 0.0174377340062 1.0 NA 0.0174377340062 0.0174377340062 0.427536231884 0.635944700461 0.891304347826 NC_045512.2:28613-28642 - 28613 28642 10 NotMaximal AUA NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28612;30;0&s=-&p=30&e=30&w=0&f=28613-28642-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28613-28642&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -5.7301 1.0 0.6 -9.55016666667 -5.03551 -0.69459 NA 0.993911769494 0.094488035162 NA 0.730206739378 0.0883998046557 0.566666666667 0.0 0.0 NC_045512.2:6366-6395 + 6366 6395 10 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6365;30;0&p=30&e=30&w=0&f=6366-6395", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6366-6395&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -5.74257 0.9813 0.577465832355 -9.94443251575 -3.21596 -2.52661 NA 0.094488035162 1.0 NA 0.975288946769 0.094488035162 0.466666666667 0.666666666667 1.0 NC_045512.2:14062-14136 - 14062 14136 25 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14061;75;0&s=-&p=30&e=30&w=0&f=14062-14136-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14062-14136&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -5.750864 1.0 1.18666666667 -4.84623370787 -14.366596 8.615732 NA 0.706439850236 0.873410385805 NA 0.890405339411 0.68944489663 0.413333333333 0.63025210084 0.0 NC_045512.2:29420-29479 - 29420 29479 20 NotMaximal AUC NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29419;60;0&s=-&p=30&e=30&w=0&f=29420-29479-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29420-29479&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -5.77417 0.9963 0.80132796453 -7.20575127237 -9.08027 3.3061 NA 0.680192088556 0.706439850236 NA 0.965606381247 0.645798469803 0.466666666667 0.30612244898 0.0 NC_045512.2:28409-28483 - 28409 28483 25 NotMaximal UUG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28408;75;0&s=-&p=30&e=30&w=0&f=28409-28483-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28409-28483&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -5.776256 1.0 0.666666666667 -8.664384 -6.266 0.489744 NA 0.706439850236 1.0 NA 1.0 0.706439850236 0.48 0.752508361204 0.0 NC_045512.2:14995-15096 - 14995 15096 34 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14994;102;0&s=-&p=30&e=30&w=0&f=14995-15096-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14995-15096&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -5.79432647059 1.0 0.598039215686 -9.68887377049 -10.5583411765 4.76401470588 NA 0.912111346248 0.890405339411 NA 1.0 0.706439850236 0.333333333333 0.708333333333 0.294117647059 NC_045512.2:29420-29458 - 29420 29458 13 NotMaximal AAG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29419;39;0&s=-&p=30&e=30&w=0&f=29420-29458-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29420-29458&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -5.80817692308 0.9943 0.822555842866 -7.06113387128 -8.45667692308 2.6485 NA 0.680192088556 0.706439850236 NA 0.618352596451 0.604466872863 0.461538461538 0.4875 0.0 NC_045512.2:28865-28945 - 28865 28945 27 NotMaximal AAG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28864;81;0&s=-&p=30&e=30&w=0&f=28865-28945-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28865-28945&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -5.84065555556 0.9967 0.95537567277 -6.11346480974 -6.36540740741 0.524751851847 NA 0.99467686798 0.0174377340062 NA 0.0174377340062 0.0174377340062 0.555555555556 0.162 0.0 NC_045512.2:28449-28574 + 28449 28574 42 NotMaximal AUG Canonical N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28448;126;0&p=30&e=30&w=0&f=28449-28574", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28449-28574&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -5.8422547619 1.0 0.793650793651 -7.36124099999 -4.35866190476 -1.48359285714 0.993661077649 1.0 1.0 0.993661077649 1.0 1.0 0.468253968254 0.868965517241 0.238095238095 NC_045512.2:29420-29461 - 29420 29461 14 NotMaximal AGG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29419;42;0&s=-&p=30&e=30&w=0&f=29420-29461-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29420-29461&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -5.84489285714 0.9947 0.76380185409 -7.65236798764 -9.5288 3.68390714286 NA 0.680192088556 0.706439850236 NA 1.0 0.680192088556 0.47619047619 0.4375 0.0 NC_045512.2:29420-29497 - 29420 29497 26 NotMaximal UUG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29419;78;0&s=-&p=30&e=30&w=0&f=29420-29497-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29420-29497&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -5.84783076923 0.9972 0.731790741946 -7.99112428463 -9.16583846154 3.31800769231 NA 0.680192088556 0.706439850236 NA 1.0 0.680192088556 0.435897435897 0.273684210526 0.0 NC_045512.2:29340-29447 + 29340 29447 36 NotMaximal AUA NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29339;108;0&p=30&e=30&w=0&f=29340-29447", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29340-29447&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -5.85838611111 0.998 0.52851553585 -11.0846053025 -4.298075 -1.56031111111 NA 0.890405339411 1.0 NA 0.260866026371 0.260866026371 0.416666666667 0.432 0.0 NC_045512.2:26925-26966 - 26925 26966 14 NotMaximal AUG Canonical M =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26924;42;0&s=-&p=30&e=30&w=0&f=26925-26966-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26925-26966&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -5.86197857143 1.0 0.785714285714 -7.4607 -11.5151714286 5.65319285714 0.276656356829 0.094488035162 0.890405339411 0.094488035162 0.890405339411 0.094488035162 0.47619047619 1.3125 0.0 NC_045512.2:29420-29476 - 29420 29476 19 NotMaximal AUC NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29419;57;0&s=-&p=30&e=30&w=0&f=29420-29476-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29420-29476&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -5.90235789474 0.9961 0.808415401259 -7.3011447896 -9.89235263158 3.98999473684 NA 0.680192088556 0.706439850236 NA 1.0 0.680192088556 0.473684210526 0.313186813187 0.0 NC_045512.2:29210-29251 - 29210 29251 14 NotMaximal AGG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29209;42;0&s=-&p=30&e=30&w=0&f=29210-29251-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29210-29251&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -5.91528571429 1.0 0.47619047619 -12.4221 -8.83947142857 2.92418571428 NA 0.364759889305 0.472931792284 NA 1.0 0.364759889305 0.547619047619 1.27272727273 0.0 NC_045512.2:26338-26463 - 26338 26463 42 Maximal AAG NearCognate E =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26337;126;0&s=-&p=30&e=30&w=0&f=26338-26463-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26338-26463&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -5.92887380952 1.0 0.531746031746 -11.1498223881 -7.64334761905 1.71447380953 NA 1.0 0.094488035162 NA 0.912111346248 0.094488035162 0.388888888889 1.27272727273 0.0 NC_045512.2:29420-29500 - 29420 29500 27 Maximal UUG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29419;81;0&s=-&p=30&e=30&w=0&f=29420-29500-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29420-29500&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -5.93928888889 0.9973 0.778761455207 -7.6265830174 -9.02251111111 3.08322222222 NA 0.680192088556 0.706439850236 NA 0.992072277389 0.672264365945 0.432098765432 0.27 0.0 NC_045512.2:26246-26278 - 26246 26278 11 Maximal ACG NearCognate E =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26245;33;0&s=-&p=30&e=30&w=0&f=26246-26278-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26246-26278&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -5.97215454545 1.0 0.363636363636 -16.423425 -4.36010909091 -1.61204545454 NA 1.0 1.0 NA 1.0 1.0 0.454545454545 1.83333333333 0.0 NC_045512.2:27041-27088 + 27041 27088 16 NotMaximal ACG NearCognate M =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27040;48;0&p=30&e=30&w=0&f=27041-27088", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27041-27088&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -5.972625 0.9999 0.541666666667 -11.0263846154 -4.6762625 -1.2963625 NA 0.957919583266 0.992000651148 NA 1.0 0.949920234413 0.479166666667 1.47692307692 0.875 NC_045512.2:14995-15159 - 14995 15159 55 Maximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14994;165;0&s=-&p=30&e=30&w=0&f=14995-15159-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14995-15159&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -5.98185272727 1.0 0.575757575758 -10.3895336842 -10.2948545455 4.31300181818 NA 0.912111346248 0.890405339411 NA 1.0 0.706439850236 0.375757575758 0.689655172414 0.509090909091 NC_045512.2:26149-26187 - 26149 26187 13 NotMaximal AUC NearCognate ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26148;39;0&s=-&p=30&e=30&w=0&f=26149-26187-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26149-26187&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -5.99307692308 0.9097 0.63868822525 -9.38341539134 -9.05835384615 3.06527692307 NA 0.452648543057 0.297567963536 NA 0.978368875142 0.0174377340062 0.358974358974 0.8125 1.0 NC_045512.2:13760-13831 + 13760 13831 24 Maximal ACG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13759;72;0&p=30&e=30&w=0&f=13760-13831", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13760-13831&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -6.03871666667 1.0 0.486111111111 -12.4225028571 -3.29045416667 -2.7482625 NA 0.0174377340062 0.0174377340062 NA 1.0 0.0174377340062 0.430555555556 1.26315789474 0.402777777778 NC_045512.2:14062-14151 - 14062 14151 30 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14061;90;0&s=-&p=30&e=30&w=0&f=14062-14151-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14062-14151&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -6.04156333333 1.0 1.23333333333 -4.89856486486 -15.2009366667 9.15937333334 NA 0.706439850236 0.473442943187 NA 0.878398176787 0.289477454013 0.388888888889 0.6 0.0 NC_045512.2:28305-28574 + 28305 28574 90 NotMaximal AUG Canonical N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28304;270;0&p=30&e=30&w=0&f=28305-28574", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28305-28574&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -6.04591888889 0.9967 0.903703703704 -6.69015614754 -4.44728444444 -1.59863444445 0.452648543057 1.0 1.0 0.452648543057 1.0 1.0 0.5 0.892857142857 0.266666666667 N.iORF2 NC_045512.2:10586-10621 - 10586 10621 12 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10585;36;0&s=-&p=30&e=30&w=0&f=10586-10621-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10586-10621&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -6.06995 1.0 0.805555555556 -7.53511034483 -13.7833666667 7.71341666667 NA 0.706439850236 1.0 NA 1.0 0.706439850236 0.388888888889 0.0 0.0 NC_045512.2:13372-13407 + 13372 13407 12 Maximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13371;36;0&p=30&e=30&w=0&f=13372-13407", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13372-13407&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -6.07404166667 1.0 0.388888888889 -15.6189642857 -4.58715833333 -1.48688333334 NA 1.0 1.0 NA 1.0 1.0 0.527777777778 0.923076923077 1.0 NC_045512.2:26925-26987 - 26925 26987 21 Maximal AUG Canonical M =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26924;63;0&s=-&p=30&e=30&w=0&f=26925-26987-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26925-26987&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -6.0971952381 1.0 0.936507936508 -6.51056440678 -11.042347619 4.94515238095 0.094488035162 0.094488035162 0.869956047534 0.094488035162 0.094488035162 0.094488035162 0.47619047619 1.125 0.0 NC_045512.2:7444-7476 + 7444 7476 11 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7443;33;0&p=30&e=30&w=0&f=7444-7476", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7444-7476&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -6.0973 1.0 0.848484848485 -7.18610357143 -16.9584727273 10.8611727273 0.683128764447 0.0 0.706439850236 0.0 1.0 0.0 0.393939393939 1.5 0.0 NC_045512.2:12909-12938 + 12909 12938 10 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12908;30;0&p=30&e=30&w=0&f=12909-12938", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12909-12938&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -6.104 1.0 0.433333333333 -14.0861538462 -4.91469 -1.18931 NA 1.0 1.0 NA 0.998831189972 0.998831189972 0.4 0.0 1.0 NC_045512.2:28865-28921 - 28865 28921 19 NotMaximal AUC NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28864;57;0&s=-&p=30&e=30&w=0&f=28865-28921-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28865-28921&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -6.14143157895 0.9954 0.989218061305 -6.20836984198 -6.39837368421 0.256942105261 NA 0.99467686798 0.706439850236 NA 0.343053882468 0.0174377340062 0.561403508772 0.230769230769 0.0 NC_045512.2:15247-15330 - 15247 15330 28 Maximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15246;84;0&s=-&p=30&e=30&w=0&f=15247-15330-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15247-15330&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -6.14310357143 1.0 0.678571428571 -9.05299473684 -11.4903571429 5.34725357143 NA 1.0 1.0 NA 1.0 1.0 0.380952380952 0.0 0.285714285714 NC_045512.2:14062-14154 - 14062 14154 31 Maximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14061;93;0&s=-&p=30&e=30&w=0&f=14062-14154-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14062-14154&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -6.14881935484 1.0 1.22580645161 -5.01614210526 -16.7490096774 10.6001903226 NA 0.706439850236 0.473442943187 NA 0.754852677845 0.0894774540127 0.376344086022 0.62 0.0 NC_045512.2:15247-15294 - 15247 15294 16 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15246;48;0&s=-&p=30&e=30&w=0&f=15247-15294-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15247-15294&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -6.1554625 1.0 0.666666666667 -9.23319375 -7.80623125 1.65076875 NA 1.0 1.0 NA 0.736249389549 0.736249389549 0.375 0.0 0.5 NC_045512.2:28409-28474 - 28409 28474 22 NotMaximal AGG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28408;66;0&s=-&p=30&e=30&w=0&f=28409-28474-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28409-28474&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -6.16093181818 1.0 0.636363636364 -9.68146428571 -6.23566363636 0.0747318181836 NA 0.706439850236 1.0 NA 0.701116718216 0.701116718216 0.469696969697 0.628571428571 0.0 NC_045512.2:26925-26960 - 26925 26960 12 NotMaximal ACG NearCognate M =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26924;36;0&s=-&p=30&e=30&w=0&f=26925-26960-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26925-26960&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -6.167275 1.0 0.777777777778 -7.92935357143 -13.8199833333 7.65270833333 NA 0.094488035162 0.890405339411 NA 1.0 0.094488035162 0.472222222222 1.54285714286 0.0 NC_045512.2:6398-6439 - 6398 6439 14 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6397;42;0&s=-&p=30&e=30&w=0&f=6398-6439-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6398-6439&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -6.16814285714 0.9813 0.752161378277 -8.20055779954 -4.95802857143 -1.21011428571 NA 0.094488035162 0.976594497802 NA 0.981299039557 0.094488035162 0.404761904762 0.0 1.0 NC_045512.2:15565-15606 - 15565 15606 14 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15564;42;0&s=-&p=30&e=30&w=0&f=15565-15606-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15565-15606&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -6.17632142857 1.0 1.02380952381 -6.03268604651 -19.0345571429 12.8582357143 NA 0.364759889305 0.452648543057 NA 0.890109067231 0.364759889305 0.380952380952 1.3125 0.0 NC_045512.2:3213-3299 + 3213 3299 29 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3212;87;0&p=30&e=30&w=0&f=3213-3299", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3213-3299&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -6.19232758621 0.3326 5.16817787519 -1.19816456317 -8.8307 2.63837241379 NA 0.0174377340062 0.509689076998 NA 0.53506430083 0.0174377340062 0.390804597701 0.302083333333 0.0 NC_045512.2:14995-15150 - 14995 15150 52 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14994;156;0&s=-&p=30&e=30&w=0&f=14995-15150-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14995-15150&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -6.19461730769 1.0 0.570512820513 -10.8579808989 -10.3986384615 4.20402115385 NA 0.912111346248 0.890405339411 NA 1.0 0.706439850236 0.384615384615 0.694104560623 0.538461538462 NC_045512.2:14995-15156 - 14995 15156 54 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14994;162;0&s=-&p=30&e=30&w=0&f=14995-15156-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14995-15156&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -6.20340555556 1.0 0.574074074074 -10.8059322581 -10.1502333333 3.94682777777 0.878993976884 0.912111346248 0.890405339411 0.69502848771 1.0 0.706439850236 0.376543209877 0.698275862069 0.518518518519 NC_045512.2:17014-17061 - 17014 17061 16 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17013;48;0&s=-&p=30&e=30&w=0&f=17014-17061-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17014-17061&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -6.20421875 1.0 0.958333333333 -6.4739673913 -15.6173625 9.41314375 NA 0.770727657496 1.0 NA 1.0 0.770727657496 0.333333333333 0.0 0.5625 NC_045512.2:26338-26460 - 26338 26460 41 NotMaximal AUC NearCognate E =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26337;123;0&s=-&p=30&e=30&w=0&f=26338-26460-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26338-26460&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -6.21717073171 1.0 0.536585365854 -11.5865454546 -7.72152682927 1.50435609756 NA 1.0 0.094488035162 NA 0.912111346248 0.094488035162 0.390243902439 1.29020979021 0.0 NC_045512.2:12231-12290 + 12231 12290 20 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12230;60;0&p=30&e=30&w=0&f=12231-12290", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12231-12290&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -6.232055 1.0 0.583333333333 -10.6835228571 -6.318225 0.08617 NA 1.0 0.88406641706 NA 1.0 0.88406641706 0.45 0.681818181818 0.633333333333 NC_045512.2:12830-12883 - 12830 12883 18 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12829;54;0&s=-&p=30&e=30&w=0&f=12830-12883-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12830-12883&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -6.23701111111 1.0 0.907407407407 -6.87344081633 -12.0204611111 5.78345 NA 0.0174377340062 0.890405339411 NA 0.672811329969 0.0174377340062 0.407407407407 0.0 0.5 NC_045512.2:12741-12770 - 12741 12770 10 NotMaximal ACG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12740;30;0&s=-&p=30&e=30&w=0&f=12741-12770-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12741-12770&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -6.24801 1.0 0.533333333333 -11.71501875 -10.90919 4.66118 NA 0.832462965978 1.0 NA 0.972840631613 0.805303597591 0.466666666667 0.625 0.0 NC_045512.2:29147-29191 - 29147 29191 15 Maximal UUG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29146;45;0&s=-&p=30&e=30&w=0&f=29147-29191-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29147-29191&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -6.24902 1.0 0.555555555556 -11.248236 -8.44369333333 2.19467333333 NA 1.0 0.706439850236 NA 1.0 0.706439850236 0.4 0.5625 0.0 NC_045512.2:29151-29189 - 29151 29189 13 NotMaximal GUG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29150;39;0&s=-&p=30&e=30&w=0&f=29151-29189-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29151-29189&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -6.25859230769 1.0 0.564102564103 -11.0947772727 -11.0689076923 4.81031538462 NA 0.984346410549 1.0 NA 0.890405339411 0.874751749959 0.435897435897 0.541666666667 0.0 NC_045512.2:13362-13445 - 13362 13445 28 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13361;84;0&s=-&p=30&e=30&w=0&f=13362-13445-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13362-13445&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -6.27478214286 1.0 0.5 -12.5495642857 -6.84109285714 0.566310714283 NA 1.0 1.0 NA 0.544958489337 0.544958489337 0.488095238095 0.803827751196 1.0 NC_045512.2:12476-12505 - 12476 12505 10 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12475;30;0&s=-&p=30&e=30&w=0&f=12476-12505-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12476-12505&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -6.2882 1.0 0.933333333333 -6.73735714286 -20.93156 14.64336 NA 0.0174377340062 1.0 NA 0.364759889305 0.0174377340062 0.333333333333 0.0 0.2 NC_045512.2:10487-10516 - 10487 10516 10 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10486;30;0&s=-&p=30&e=30&w=0&f=10487-10516-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10487-10516&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -6.29087 1.0 0.733333333333 -8.57845909091 -19.21413 12.92326 NA 0.697340061859 1.0 NA 1.0 0.697340061859 0.3 0.0 0.7 NC_045512.2:13763-13831 + 13763 13831 23 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13762;69;0&p=30&e=30&w=0&f=13763-13831", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13763-13831&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -6.29109565217 1.0 0.492753623188 -12.7672235294 -3.51311304348 -2.77798260869 NA 0.0174377340062 0.0174377340062 NA 1.0 0.0174377340062 0.420289855072 1.04545454545 0.376811594203 NC_045512.2:26338-26457 - 26338 26457 40 NotMaximal AGG NearCognate E =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26337;120;0&s=-&p=30&e=30&w=0&f=26338-26457-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26338-26457&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -6.297345 1.0 0.541666666667 -11.6258676923 -8.06394 1.766595 NA 1.0 0.094488035162 NA 1.0 0.094488035162 0.391666666667 1.31868131868 0.0 NC_045512.2:13395-13463 + 13395 13463 23 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13394;69;0&p=30&e=30&w=0&f=13395-13463", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13395-13463&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -6.29736086957 1.0 0.68115942029 -9.24506170213 -5.11167391304 -1.18568695653 NA 1.0 0.0174377340062 NA 1.0 0.0174377340062 0.463768115942 0.80859375 1.0 NC_045512.2:28409-28522 - 28409 28522 38 NotMaximal UUG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28408;114;0&s=-&p=30&e=30&w=0&f=28409-28522-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28409-28522&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -6.30174210526 1.0 0.824561403509 -7.64253829787 -7.30859736842 1.00685526316 NA 0.706439850236 1.0 NA 1.0 0.706439850236 0.473684210526 0.670588235294 0.0 NC_045512.2:15487-15534 - 15487 15534 16 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15486;48;0&s=-&p=30&e=30&w=0&f=15487-15534-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15487-15534&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -6.302625 1.0 0.625 -10.0842 -13.12679375 6.82416875 NA 0.655686146834 1.0 NA 1.0 0.655686146834 0.354166666667 0.0 0.0 NC_045512.2:27037-27138 - 27037 27138 34 NotMaximal AUU NearCognate M =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27036;102;0&s=-&p=30&e=30&w=0&f=27037-27138-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27037-27138&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -6.30845882353 1.0 0.745098039216 -8.46661578947 -9.20399705882 2.89553823529 NA 1.0 0.996060556731 NA 0.824737099137 0.820797655868 0.450980392157 0.965909090909 0.754901960784 NC_045512.2:19172-19213 - 19172 19213 14 Maximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19171;42;0&s=-&p=30&e=30&w=0&f=19172-19213-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19172-19213&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -6.33363571429 1.0 0.857142857143 -7.38924166667 -8.56297857143 2.22934285714 NA 1.0 1.0 NA 0.0174377340062 0.0174377340062 0.380952380952 0.763636363636 0.0 NC_045512.2:6749-6778 - 6749 6778 10 Maximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6748;30;0&s=-&p=30&e=30&w=0&f=6749-6778-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6749-6778&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -6.33621 1.0 2.43333333333 -2.60392191781 -30.82681 24.4906 NA 0.094488035162 1.0 NA 0.912111346248 0.094488035162 0.3 1.5 0.0 NC_045512.2:27859-27894 + 27859 27894 12 NotMaximal AAG NearCognate ORF7b,ORF8 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27858;36;0&p=30&e=30&w=0&f=27859-27894", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27859-27894&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -6.35884166667 0.8124 1.3881435668 -4.58082421641 -9.210725 2.85188333333 NA 0.706439850236 0.301699495361 NA 0.976900537197 0.301699495361 0.361111111111 1.8 0.0277777777778 NC_045512.2:29420-29470 - 29420 29470 17 NotMaximal AUC NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29419;51;0&s=-&p=30&e=30&w=0&f=29420-29470-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29420-29470&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -6.38294117647 0.9957 0.883915252388 -7.22121397863 -8.82071176471 2.43777058824 NA 0.680192088556 0.706439850236 NA 0.598267947257 0.364502685984 0.490196078431 0.331168831169 0.0 NC_045512.2:17014-17043 - 17014 17043 10 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17013;30;0&s=-&p=30&e=30&w=0&f=17014-17043-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17014-17043&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -6.38401 1.0 0.8 -7.9800125 -13.23962 6.85561 NA 0.770727657496 1.0 NA 0.707777958652 0.459212111346 0.3 0.0 0.9 NC_045512.2:28731-28772 - 28731 28772 14 NotMaximal AUG Canonical N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28730;42;0&s=-&p=30&e=30&w=0&f=28731-28772-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28731-28772&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -6.39424285714 1.0 0.738095238095 -8.66316774193 -7.85238571429 1.45814285715 0.706439850236 0.094488035162 0.876200553476 0.094488035162 1.0 0.094488035162 0.428571428571 0.583333333333 0.0 NC_045512.2:15338-15370 - 15338 15370 11 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15337;33;0&s=-&p=30&e=30&w=0&f=15338-15370-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15338-15370&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -6.41043636364 1.0 0.575757575758 -11.1339157895 -9.5443 3.13386363636 NA 0.630349991861 0.997883770145 NA 0.0174377340062 0.0174377340062 0.454545454545 0.66 0.848484848485 NC_045512.2:12741-12776 - 12741 12776 12 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12740;36;0&s=-&p=30&e=30&w=0&f=12741-12776-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12741-12776&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -6.41920833333 1.0 0.611111111111 -10.5041590909 -11.4446166667 5.02540833334 NA 0.832462965978 1.0 NA 1.0 0.832462965978 0.444444444444 0.571428571429 0.0 NC_045512.2:28320-28382 - 28320 28382 21 NotMaximal AUC NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28319;63;0&s=-&p=30&e=30&w=0&f=28320-28382-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28320-28382&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -6.44231904762 0.986 1.14285714286 -5.63702916667 -8.43715238095 1.99483333333 NA 1.0 0.868774214553 NA 0.0 0.0 0.555555555556 0.857142857143 0.507936507937 NC_045512.2:29420-29491 - 29420 29491 24 NotMaximal UUG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29419;72;0&s=-&p=30&e=30&w=0&f=29420-29491-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29420-29491&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -6.44821666667 0.9969 0.751106637108 -8.58495498255 -9.82239583333 3.37417916666 NA 0.680192088556 0.706439850236 NA 1.0 0.680192088556 0.444444444444 0.285714285714 0.0 NC_045512.2:14995-15144 - 14995 15144 50 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14994;150;0&s=-&p=30&e=30&w=0&f=14995-15144-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14995-15144&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -6.449442 1.0 0.593333333333 -10.8698460674 -10.692932 4.24349 NA 0.912111346248 0.890405339411 NA 0.865899397688 0.681933908514 0.38 0.740740740741 0.52 NC_045512.2:26925-26969 - 26925 26969 15 NotMaximal AAG NearCognate M =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26924;45;0&s=-&p=30&e=30&w=0&f=26925-26969-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26925-26969&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -6.45487333333 1.0 0.911111111111 -7.08461707317 -10.8801133333 4.42524 NA 0.094488035162 0.869956047534 NA 0.094488035162 0.094488035162 0.466666666667 1.25 0.0 NC_045512.2:28409-28504 - 28409 28504 32 NotMaximal AUU NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28408;96;0&s=-&p=30&e=30&w=0&f=28409-28504-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28409-28504&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -6.46838125 1.0 0.75 -8.62450833333 -8.106946875 1.638565625 NA 0.706439850236 1.0 NA 0.890405339411 0.706439850236 0.46875 0.827586206897 0.0 NC_045512.2:27141-27182 - 27141 27182 14 NotMaximal AAG NearCognate M =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27140;42;0&s=-&p=30&e=30&w=0&f=27141-27182-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27141-27182&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -6.49838571429 1.0 0.809523809524 -8.02741764706 -10.0316928571 3.53330714285 NA 1.0 0.094488035162 NA 0.094488035162 0.094488035162 0.404761904762 0.0 0.642857142857 NC_045512.2:28409-28516 - 28409 28516 36 NotMaximal AUC NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28408;108;0&s=-&p=30&e=30&w=0&f=28409-28516-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28409-28516&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -6.50229166667 1.0 0.87037037037 -7.47071808511 -7.69133888889 1.18904722222 NA 0.706439850236 1.0 NA 0.906456128927 0.700784632916 0.472222222222 0.710526315789 0.0 NC_045512.2:28731-28778 - 28731 28778 16 NotMaximal UUG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28730;48;0&s=-&p=30&e=30&w=0&f=28731-28778-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28731-28778&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -6.50344375 1.0 0.666666666667 -9.755165625 -6.92215625 0.4187125 NA 0.094488035162 0.876200553476 NA 0.978368875142 0.094488035162 0.4375 0.489795918367 0.0 NC_045512.2:11501-11566 - 11501 11566 22 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;11500;66;0&s=-&p=30&e=30&w=0&f=11501-11566-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:11501-11566&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -6.50640909091 1.0 0.590909090909 -11.0108461538 -10.2470181818 3.74060909091 NA 0.493628520267 0.094488035162 NA 0.604681751587 0.085388246785 0.393939393939 0.0 0.954545454545 NC_045512.2:17368-17400 - 17368 17400 11 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17367;33;0&s=-&p=30&e=30&w=0&f=17368-17400-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17368-17400&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -6.51471818182 1.0 0.818181818182 -7.96243333334 -14.8239 8.30918181818 NA 0.571268110044 1.0 NA 1.0 0.571268110044 0.333333333333 0.0 0.0 NC_045512.2:15247-15321 - 15247 15321 25 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15246;75;0&s=-&p=30&e=30&w=0&f=15247-15321-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15247-15321&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -6.541132 1.0 0.693333333333 -9.434325 -10.897552 4.35642 NA 1.0 1.0 NA 1.0 1.0 0.386666666667 0.0 0.32 NC_045512.2:27095-27133 + 27095 27133 13 Maximal AGG NearCognate M =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27094;39;0&p=30&e=30&w=0&f=27095-27133", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27095-27133&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -6.54285384615 1.0 0.794871794872 -8.23133225806 -9.42473846154 2.88188461539 NA 0.553416897281 0.68114601986 NA 1.0 0.34774540127 0.461538461538 0.4875 0.641025641026 NC_045512.2:25088-25123 - 25088 25123 12 NotMaximal AUU NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25087;36;0&s=-&p=30&e=30&w=0&f=25088-25123-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25088-25123&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -6.54460833333 1.0 1.19444444444 -5.47920697674 -18.54765 12.0030416667 NA 0.48120136741 0.883444571056 NA 0.983301318574 0.48120136741 0.333333333333 1.02857142857 1.0 NC_045512.2:27031-27081 + 27031 27081 17 NotMaximal UUG NearCognate M =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27030;51;0&p=30&e=30&w=0&f=27031-27081", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27031-27081&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -6.54953529412 0.9999 0.392156862745 -16.701315 -6.93680588235 0.387270588233 NA 1.0 0.0174377340062 NA 0.343053882468 0.0174377340062 0.450980392157 1.54545454545 0.882352941176 NC_045512.2:19477-19533 - 19477 19533 19 Maximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19476;57;0&s=-&p=30&e=30&w=0&f=19477-19533-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19477-19533&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -6.55291578947 1.0 1.38596491228 -4.72805316455 -16.3224894737 9.76957368421 NA 0.589750936025 0.384258505616 NA 0.807817027511 0.303132020186 0.421052631579 0.422222222222 0.0 NC_045512.2:26338-26442 - 26338 26442 35 NotMaximal AUU NearCognate E =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26337;105;0&s=-&p=30&e=30&w=0&f=26338-26442-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26338-26442&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -6.55523714286 1.0 0.485714285714 -13.4960764706 -8.1321 1.57686285714 NA 1.0 0.094488035162 NA 0.477942373433 0.094488035162 0.390476190476 1.50717703349 0.0 NC_045512.2:10479-10508 + 10479 10508 10 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10478;30;0&p=30&e=30&w=0&f=10479-10508", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10479-10508&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -6.57508 1.0 0.4 -16.4377 -7.28737 0.71229 0.987637961908 0.544356177763 1.0 0.544356177763 1.0 0.544356177763 0.366666666667 0.0 0.966666666667 NC_045512.2:28731-28793 - 28731 28793 21 NotMaximal CUG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28730;63;0&s=-&p=30&e=30&w=0&f=28731-28793-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28731-28793&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -6.57594285714 1.0 0.619047619048 -10.6226769231 -7.17036666667 0.594423809527 NA 0.094488035162 0.876200553476 NA 0.899749308156 0.094488035162 0.460317460317 0.636363636364 0.0 NC_045512.2:29412-29447 + 29412 29447 12 NotMaximal AAG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29411;36;0&p=30&e=30&w=0&f=29412-29447", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29412-29447&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -6.600725 0.9939 0.83554660755 -7.89988845668 -6.28223333333 -0.318491666667 NA 0.890405339411 1.0 NA 0.094488035162 0.094488035162 0.472222222222 0.5 0.0 NC_045512.2:14995-15072 - 14995 15072 26 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14994;78;0&s=-&p=30&e=30&w=0&f=14995-15072-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14995-15072&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -6.61217692308 1.0 0.705128205128 -9.37726909091 -12.3129153846 5.70073846154 NA 0.912111346248 0.890405339411 NA 1.0 0.706439850236 0.333333333333 0.945454545455 0.0769230769231 NC_045512.2:28731-28769 - 28731 28769 13 NotMaximal UUG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28730;39;0&s=-&p=30&e=30&w=0&f=28731-28769-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28731-28769&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -6.63874615385 1.0 0.769230769231 -8.63037 -7.81341538462 1.17466923077 NA 0.094488035162 0.876200553476 NA 0.912111346248 0.094488035162 0.435897435897 0.590909090909 0.0 NC_045512.2:9242-9292 - 9242 9292 17 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9241;51;0&s=-&p=30&e=30&w=0&f=9242-9292-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9242-9292&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -6.65648235294 1.0 1.27450980392 -5.22277846154 -12.4385529412 5.78207058824 NA 0.890405339411 0.694598730262 NA 0.477942373433 0.368347712844 0.392156862745 0.0 0.0 NC_045512.2:26149-26184 - 26149 26184 12 NotMaximal AUA NearCognate ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26148;36;0&s=-&p=30&e=30&w=0&f=26149-26184-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26149-26184&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -6.66045833333 0.9021 0.664134466243 -10.0287798208 -9.46468333333 2.804225 NA 0.452648543057 0.297567963536 NA 0.884951977861 0.0174377340062 0.361111111111 0.857142857143 1.0 NC_045512.2:29379-29417 - 29379 29417 13 NotMaximal AGG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29378;39;0&s=-&p=30&e=30&w=0&f=29379-29417-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29379-29417&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -6.66488461538 1.0 0.435897435897 -15.2900294118 -7.19234615385 0.527461538466 NA 1.0 1.0 NA 0.890405339411 0.890405339411 0.384615384615 0.0 0.0 NC_045512.2:14995-15078 - 14995 15078 28 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14994;84;0&s=-&p=30&e=30&w=0&f=14995-15078-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14995-15078&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -6.66874285714 1.0 0.714285714286 -9.33624 -11.7569357143 5.08819285715 NA 0.912111346248 0.890405339411 NA 0.988201204623 0.694641054859 0.321428571429 0.933333333333 0.142857142857 NC_045512.2:28865-28930 - 28865 28930 22 NotMaximal AAG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28864;66;0&s=-&p=30&e=30&w=0&f=28865-28930-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28865-28930&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -6.67689545455 0.996 0.975536810521 -6.84432958607 -7.05574090909 0.378845454541 NA 0.99467686798 0.706439850236 NA 0.573670844864 0.2801106951 0.560606060606 0.196428571429 0.0 NC_045512.2:27862-27894 + 27862 27894 11 NotMaximal AUC NearCognate ORF7b,ORF8 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27861;33;0&p=30&e=30&w=0&f=27862-27894", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27862-27894&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -6.68564545455 0.7954 1.3931263153 -4.79902316188 -10.3096909091 3.62404545454 NA 0.706439850236 0.301699495361 NA 0.966882630636 0.301699495361 0.363636363636 2.0625 0.030303030303 7b.iORF2 NC_045512.2:1256-1309 - 1256 1309 18 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1255;54;0&s=-&p=30&e=30&w=0&f=1256-1309-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1256-1309&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -6.68721666667 1.0 1.33333333333 -5.0154125 -11.0683611111 4.38114444444 NA 0.926335666612 0.576828910956 NA 0.826801237181 0.476304737099 0.462962962963 1.125 0.666666666667 NC_045512.2:28865-29059 - 28865 29059 65 NotMaximal ACG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28864;195;0&s=-&p=30&e=30&w=0&f=28865-29059-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28865-29059&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -6.69454769231 0.9972 0.930675830092 -7.19321107936 -7.69658 1.00203230769 NA 0.99467686798 0.0174377340062 NA 0.706439850236 0.0174377340062 0.497435897436 0.249360613811 0.0 NC_045512.2:15247-15297 - 15247 15297 17 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15246;51;0&s=-&p=30&e=30&w=0&f=15247-15297-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15247-15297&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -6.70292941176 1.0 0.745098039216 -8.9960368421 -9.90309411765 3.20016470589 NA 1.0 1.0 NA 0.776695425688 0.776695425688 0.352941176471 0.0 0.470588235294 NC_045512.2:16735-16794 - 16735 16794 20 NotMaximal ACG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16734;60;0&s=-&p=30&e=30&w=0&f=16735-16794-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16735-16794&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -6.722345 1.0 0.9 -7.46927222222 -10.759745 4.0374 NA 0.842891095556 0.890405339411 NA 0.688064463617 0.618844212925 0.4 0.833333333333 0.0 NC_045512.2:27037-27210 - 27037 27210 58 Maximal AUG Canonical M,ORF6 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27036;174;0&s=-&p=30&e=30&w=0&f=27037-27210-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27037-27210&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -6.72675689655 1.0 0.649425287356 -10.3580150442 -8.73879310345 2.0120362069 0.706439850236 1.0 0.996060556731 0.702500406967 0.706439850236 0.702500406967 0.419540229885 0.653153153153 0.632183908046 NC_045512.2:12476-12520 - 12476 12520 15 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12475;45;0&s=-&p=30&e=30&w=0&f=12476-12520-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12476-12520&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -6.72991333333 1.0 0.822222222222 -8.18502972973 -18.0354666667 11.3055533333 NA 0.0174377340062 1.0 NA 0.890405339411 0.0174377340062 0.311111111111 0.918367346939 0.466666666667 NC_045512.2:13301-13420 - 13301 13420 40 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13300;120;0&s=-&p=30&e=30&w=0&f=13301-13420-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13301-13420&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -6.73722 1.0 0.625 -10.779552 -9.8906725 3.1534525 NA 0.0174377340062 1.0 NA 1.0 0.0174377340062 0.4 0.428571428571 0.875 NC_045512.2:27455-27484 + 27455 27484 10 NotMaximal AAG NearCognate ORF7a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27454;30;0&p=30&e=30&w=0&f=27455-27484", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27455-27484&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -6.74255 1.0 1.1 -6.12959090909 -7.45742 0.71487 NA 0.986729610939 0.974706169624 NA 1.0 0.961435780563 0.366666666667 0.0 0.0 NC_045512.2:24599-24634 - 24599 24634 12 Maximal AAG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24598;36;0&s=-&p=30&e=30&w=0&f=24599-24634-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24599-24634&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -6.74306666667 1.0 0.861111111111 -7.83065806452 -17.8157916667 11.072725 NA 0.673322480873 1.0 NA 0.99726517988 0.670587660752 0.388888888889 0.0 1.0 NC_045512.2:12008-12055 - 12008 12055 16 Maximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12007;48;0&s=-&p=30&e=30&w=0&f=12008-12055-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12008-12055&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -6.77235625 1.0 1.41666666667 -4.78048676471 -15.7497 8.97734375 NA 0.0174377340062 0.495917304249 NA 0.0174377340062 0.0174377340062 0.416666666667 0.0 0.0 NC_045512.2:27151-27192 + 27151 27192 14 Maximal AUU NearCognate M =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27150;42;0&p=30&e=30&w=0&f=27151-27192", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27151-27192&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -6.78499285714 1.0 0.595238095238 -11.398788 -3.57224285714 -3.21275 NA 0.706439850236 0.094488035162 NA 0.783490151392 0.094488035162 0.380952380952 0.0 0.785714285714 M.iORF NC_045512.2:701-733 - 701 733 11 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;700;33;0&s=-&p=30&e=30&w=0&f=701-733-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:701-733&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -6.78702727273 1.0 1.06060606061 -6.39919714286 -9.23764545455 2.45061818182 NA 1.0 0.984346410549 NA 0.912111346248 0.896457756796 0.515151515152 0.942857142857 0.727272727273 NC_045512.2:13301-13417 - 13301 13417 39 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13300;117;0&s=-&p=30&e=30&w=0&f=13301-13417-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13301-13417&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -6.79573076923 1.0 0.641025641026 -10.60134 -9.51862820513 2.7228974359 NA 0.0174377340062 1.0 NA 0.956369851864 0.0174377340062 0.401709401709 0.43984962406 0.871794871795 NC_045512.2:12237-12290 + 12237 12290 18 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12236;54;0&p=30&e=30&w=0&f=12237-12290", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12237-12290&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -6.79629444444 1.0 0.611111111111 -11.1212090909 -6.31218888889 -0.484105555551 NA 1.0 0.88406641706 NA 1.0 0.88406641706 0.462962962963 0.72 0.592592592593 NC_045512.2:9242-9295 - 9242 9295 18 Maximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9241;54;0&s=-&p=30&e=30&w=0&f=9242-9295-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9242-9295&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -6.80988333333 1.0 1.25925925926 -5.40784852941 -12.4707277778 5.66084444445 NA 0.890405339411 0.694598730262 NA 1.0 0.585004069673 0.37037037037 0.0 0.0 NC_045512.2:26925-26957 - 26925 26957 11 NotMaximal AAG NearCognate M =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26924;33;0&s=-&p=30&e=30&w=0&f=26925-26957-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26925-26957&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -6.81705454545 1.0 0.848484848485 -8.03438571428 -15.3622454545 8.5451909091 NA 0.094488035162 0.890405339411 NA 0.094488035162 0.094488035162 0.454545454545 1.22222222222 0.0 NC_045512.2:29151-29192 - 29151 29192 14 NotMaximal AUU NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29150;42;0&s=-&p=30&e=30&w=0&f=29151-29192-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29151-29192&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -6.8187 1.0 0.571428571429 -11.932725 -10.5906928571 3.77199285714 NA 0.984346410549 1.0 NA 0.649770470454 0.634116881003 0.404761904762 0.583333333333 0.0 NC_045512.2:19627-19662 - 19627 19662 12 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19626;36;0&s=-&p=30&e=30&w=0&f=19627-19662-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19627-19662&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -6.85818333333 1.0 1.27777777778 -5.36727391304 -17.650525 10.7923416667 NA 1.0 1.0 NA 0.99380758587 0.99380758587 0.333333333333 0.0 0.0 NC_045512.2:11596-11676 + 11596 11676 27 Maximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;11595;81;0&p=30&e=30&w=0&f=11596-11676", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:11596-11676&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -6.86636296296 1.0 1.0 -6.86636296296 -8.6131 1.74673703704 NA 0.669109555592 1.0 NA 1.0 0.669109555592 0.333333333333 0.445054945055 0.0 NC_045512.2:16360-16413 - 16360 16413 18 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16359;54;0&s=-&p=30&e=30&w=0&f=16360-16413-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16360-16413&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -6.86840555556 1.0 0.925925925926 -7.417878 -8.91858333333 2.05017777777 NA 1.0 0.981624613381 NA 0.759544196647 0.73926094742 0.425925925926 0.415384615385 0.555555555556 NC_045512.2:6286-6321 + 6286 6321 12 Maximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6285;36;0&p=30&e=30&w=0&f=6286-6321", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6286-6321&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -6.87278333333 0.9813 0.934135905279 -7.35736983718 -13.1626916667 6.28990833334 NA 0.412316457757 0.706439850236 NA 0.981299039557 0.412316457757 0.444444444444 0.571428571429 0.0 NC_045512.2:15175-15237 - 15175 15237 21 Maximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15174;63;0&s=-&p=30&e=30&w=0&f=15175-15237-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15175-15237&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -6.88064761905 1.0 0.666666666667 -10.3209714286 -11.6712047619 4.79055714285 NA 0.684447338434 1.0 NA 1.0 0.684447338434 0.460317460317 0.308823529412 0.0 NC_045512.2:11189-11251 - 11189 11251 21 NotMaximal ACG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;11188;63;0&s=-&p=30&e=30&w=0&f=11189-11251-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:11189-11251&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -6.88073333333 1.0 0.619047619048 -11.1150307692 -12.8674095238 5.98667619048 NA 0.890405339411 0.891662054371 NA 0.990900211623 0.676890769982 0.428571428571 0.346153846154 0.0 NC_045512.2:13401-13463 + 13401 13463 21 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13400;63;0&p=30&e=30&w=0&f=13401-13463", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13401-13463&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -6.8866047619 1.0 0.746031746032 -9.23098085106 -5.44918095238 -1.43742380952 0.890405339411 1.0 0.0174377340062 0.0174377340062 1.0 0.0174377340062 0.47619047619 0.84375 1.0 NC_045512.2:13867-13932 - 13867 13932 22 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13866;66;0&s=-&p=30&e=30&w=0&f=13867-13932-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13867-13932&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -6.88848181818 1.0 0.757575757576 -9.092796 -7.76490454545 0.876422727275 NA 1.0 0.912111346248 NA 0.639143740843 0.639143740843 0.272727272727 0.0 0.454545454545 NC_045512.2:20767-20817 - 20767 20817 17 Maximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20766;51;0&s=-&p=30&e=30&w=0&f=20767-20817-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20767-20817&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -6.88924117647 1.0 0.843137254902 -8.17096046512 -10.7051176471 3.81587647059 NA 0.364759889305 1.0 NA 0.75850236041 0.364759889305 0.333333333333 0.708333333333 0.529411764706 NC_045512.2:26338-26427 - 26338 26427 30 NotMaximal ACG NearCognate E =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26337;90;0&s=-&p=30&e=30&w=0&f=26338-26427-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26338-26427&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -6.89530333333 1.0 0.444444444444 -15.5144325 -7.87210666667 0.976803333337 NA 1.0 0.094488035162 NA 1.0 0.094488035162 0.422222222222 1.51260504202 0.0 NC_045512.2:14690-14749 + 14690 14749 20 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14689;60;0&p=30&e=30&w=0&f=14690-14749", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14690-14749&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -6.897575 1.0 0.533333333333 -12.932953125 -6.14475 -0.752825 NA 1.0 1.0 NA 1.0 1.0 0.366666666667 0.0 0.85 NC_045512.2:14613-14645 + 14613 14645 11 Maximal ACG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14612;33;0&p=30&e=30&w=0&f=14613-14645", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14613-14645&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -6.90586363636 1.0 0.939393939394 -7.3514032258 -14.5830545455 7.67719090909 NA 0.447823538987 1.0 NA 0.969340713007 0.447823538987 0.484848484848 1.1 0.0 NC_045512.2:29147-29182 - 29147 29182 12 NotMaximal UUG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29146;36;0&s=-&p=30&e=30&w=0&f=29147-29182-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29147-29182&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -6.90866666667 1.0 0.555555555556 -12.4356 -7.74168333333 0.833016666663 NA 1.0 0.706439850236 NA 1.0 0.706439850236 0.416666666667 0.642857142857 0.0 NC_045512.2:28865-29053 - 28865 29053 63 NotMaximal UUG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28864;189;0&s=-&p=30&e=30&w=0&f=28865-29053-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28865-29053&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -6.91354603175 0.9971 0.944348078667 -7.32097220075 -7.80696825397 0.893422222218 NA 0.99467686798 0.0174377340062 NA 1.0 0.0174377340062 0.502645502646 0.168 0.0 NC_045512.2:14699-14749 + 14699 14749 17 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14698;51;0&p=30&e=30&w=0&f=14699-14749", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14699-14749&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -6.91668235294 1.0 0.529411764706 -13.0648444444 -6.67786470588 -0.238817647058 1.0 1.0 1.0 1.0 1.0 1.0 0.372549019608 0.0 0.823529411765 NC_045512.2:26338-26436 - 26338 26436 33 NotMaximal AUU NearCognate E =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26337;99;0&s=-&p=30&e=30&w=0&f=26338-26436-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26338-26436&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -6.93621515152 1.0 0.484848484848 -14.30594375 -8.18126060606 1.24504545454 NA 1.0 0.094488035162 NA 0.899749308156 0.094488035162 0.393939393939 1.57142857143 0.0 NC_045512.2:18155-18184 + 18155 18184 10 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18154;30;0&p=30&e=30&w=0&f=18155-18184", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18155-18184&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -6.94366 1.0 0.7 -9.91951428571 -7.66789 0.72423 NA 1.0 1.0 NA 1.0 1.0 0.466666666667 0.0 0.0 NC_045512.2:13708-13737 - 13708 13737 10 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13707;30;0&s=-&p=30&e=30&w=0&f=13708-13737-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13708-13737&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -6.95256 1.0 1.36666666667 -5.08723902439 -15.07324 8.12068 0.903011557871 0.452648543057 1.0 0.355660100928 1.0 0.452648543057 0.4 0.0 0.0 NC_045512.2:12726-12770 + 12726 12770 15 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12725;45;0&p=30&e=30&w=0&f=12726-12770", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12726-12770&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -6.96537333333 1.0 0.644444444444 -10.808337931 -7.10626666667 0.140893333337 NA 0.0174377340062 1.0 NA 0.987712843887 0.0174377340062 0.511111111111 0.681818181818 0.0 NC_045512.2:25952-25981 + 25952 25981 10 NotMaximal GUG NearCognate ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25951;30;0&p=30&e=30&w=0&f=25952-25981", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25952-25981&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -6.96616 1.0 1.23333333333 -5.64823783784 -8.22897 1.26281 NA 0.328748168647 0.890405339411 NA 0.984978023767 0.328748168647 0.4 0.0 0.0 NC_045512.2:27037-27201 - 27037 27201 55 NotMaximal CUG NearCognate M =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27036;165;0&s=-&p=30&e=30&w=0&f=27037-27201-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27037-27201&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -6.98802 1.0 0.672727272727 -10.3875972973 -9.02068 2.03266 NA 1.0 0.996060556731 NA 1.0 0.996060556731 0.430303030303 0.654761904762 0.666666666667 NC_045512.2:28865-29047 - 28865 29047 61 NotMaximal AGG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28864;183;0&s=-&p=30&e=30&w=0&f=28865-29047-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28865-29047&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.00583278689 0.997 0.920665502011 -7.60953111808 -7.2882704918 0.282437704913 NA 0.99467686798 0.0174377340062 NA 0.679280481849 0.0174377340062 0.497267759563 0.0886627906977 0.0 NC_045512.2:14281-14316 - 14281 14316 12 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14280;36;0&s=-&p=30&e=30&w=0&f=14281-14316-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14281-14316&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.00636666667 1.0 0.833333333333 -8.40764 -15.5015666667 8.4952 NA 0.480582777145 1.0 NA 1.0 0.480582777145 0.305555555556 1.2 0.0 NC_045512.2:13754-13786 - 13754 13786 11 Maximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13753;33;0&s=-&p=30&e=30&w=0&f=13754-13786-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13754-13786&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.00705454545 1.0 0.393939393939 -17.7871384615 -6.58845454545 -0.418599999995 NA 1.0 1.0 NA 1.0 1.0 0.424242424242 0.673469387755 1.0 NC_045512.2:16735-16818 - 16735 16818 28 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16734;84;0&s=-&p=30&e=30&w=0&f=16735-16818-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16735-16818&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.03390357143 1.0 0.880952380952 -7.98443108108 -10.8600678571 3.82616428571 NA 0.842891095556 0.890405339411 NA 1.0 0.637219599544 0.357142857143 0.746666666667 0.0 NC_045512.2:14995-15051 - 14995 15051 19 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14994;57;0&s=-&p=30&e=30&w=0&f=14995-15051-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14995-15051&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.03544736842 1.0 0.771929824561 -9.11410227273 -11.8497842105 4.81433684211 NA 0.912111346248 0.890405339411 NA 1.0 0.706439850236 0.368421052632 1.03636363636 0.0 NC_045512.2:27037-27225 - 27037 27225 63 Maximal CUG NearCognate M,ORF6 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27036;189;0&s=-&p=30&e=30&w=0&f=27037-27225-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27037-27225&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.04676031746 1.0 0.671957671958 -10.4869110236 -9.26909047619 2.22233015873 NA 1.0 0.803799446524 NA 1.0 0.803799446524 0.42328042328 0.70875 0.582010582011 NC_045512.2:12882-12938 + 12882 12938 19 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12881;57;0&p=30&e=30&w=0&f=12882-12938", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12882-12938&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -7.05064736842 1.0 0.561403508772 -12.558965625 -3.90097368421 -3.14967368421 NA 1.0 1.0 NA 0.695910792772 0.695910792772 0.421052631579 0.0 0.964912280702 NC_045512.2:9646-9735 + 9646 9735 30 Maximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9645;90;0&p=30&e=30&w=0&f=9646-9735", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9646-9735&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -7.05622 1.0 1.13333333333 -6.22607647059 -12.9657833333 5.90956333333 NA 0.890405339411 0.706439850236 NA 1.0 0.706439850236 0.333333333333 0.0 0.0 NC_045512.2:25088-25138 - 25088 25138 17 Maximal AUU NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25087;51;0&s=-&p=30&e=30&w=0&f=25088-25138-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25088-25138&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.06672941176 1.0 1.19607843137 -5.90824918032 -18.2122764706 11.1455470588 NA 0.48120136741 0.883444571056 NA 0.850069998372 0.264118508872 0.372549019608 0.566666666667 1.0 NC_045512.2:14995-15069 - 14995 15069 25 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14994;75;0&s=-&p=30&e=30&w=0&f=14995-15069-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14995-15069&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.067056 1.0 0.733333333333 -9.63689454545 -12.110652 5.043596 NA 0.912111346248 0.890405339411 NA 0.967289597916 0.673729448152 0.333333333333 0.974025974026 0.04 NC_045512.2:13867-13914 - 13867 13914 16 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13866;48;0&s=-&p=30&e=30&w=0&f=13867-13914-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13867-13914&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.067575 1.0 0.6875 -10.2801090909 -8.74481875 1.67724375 NA 1.0 0.912111346248 NA 0.890405339411 0.706439850236 0.25 0.0 0.625 NC_045512.2:15338-15373 - 15338 15373 12 NotMaximal ACG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15337;36;0&s=-&p=30&e=30&w=0&f=15338-15373-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15338-15373&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.06911666667 1.0 0.638888888889 -11.0647043478 -9.285975 2.21685833333 NA 0.630349991861 0.997883770145 NA 1.0 0.628233762006 0.472222222222 1.09090909091 0.861111111111 NC_045512.2:13867-13929 - 13867 13929 21 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13866;63;0&s=-&p=30&e=30&w=0&f=13867-13929-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13867-13929&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.08271904762 1.0 0.634920634921 -11.1552825 -7.8866 0.80388095238 NA 1.0 0.912111346248 NA 0.906023115741 0.906023115741 0.269841269841 0.0 0.47619047619 NC_045512.2:28259-28297 - 28259 28297 13 NotMaximal AUU NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28258;39;0&s=-&p=30&e=30&w=0&f=28259-28297-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28259-28297&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.11580769231 0.943 0.967697557058 -7.35333848929 -3.09956923077 -4.01623846154 NA 0.618326550545 0.59356666124 NA 0.296991697867 0.296991697867 0.333333333333 0.975 0.0 NC_045512.2:27141-27170 - 27141 27170 10 NotMaximal AUU NearCognate M =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27140;30;0&s=-&p=30&e=30&w=0&f=27141-27170-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27141-27170&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.13615 1.0 1.03333333333 -6.9059516129 -12.95251 5.81636 NA 1.0 0.876522871561 NA 1.0 0.876522871561 0.433333333333 0.0 0.5 NC_045512.2:5351-5404 - 5351 5404 18 Maximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5350;54;0&s=-&p=30&e=30&w=0&f=5351-5404-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5351-5404&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.13678333333 1.0 1.16666666667 -6.11724285714 -16.0590388889 8.92225555556 NA 0.694461989256 1.0 NA 0.6142699007 0.509386293342 0.444444444444 0.0 0.0 NC_045512.2:15860-15895 + 15860 15895 12 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15859;36;0&p=30&e=30&w=0&f=15860-15895", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15860-15895&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -7.14566666667 1.0 0.611111111111 -11.6929090909 -8.348225 1.20255833333 NA 1.0 1.0 NA 0.997883770145 0.997883770145 0.388888888889 0.0 0.0 NC_045512.2:13867-13908 - 13867 13908 14 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13866;42;0&s=-&p=30&e=30&w=0&f=13867-13908-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13867-13908&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.14680714286 1.0 0.738095238095 -9.68277096775 -9.53867857143 2.39187142857 NA 1.0 0.912111346248 NA 1.0 0.912111346248 0.261904761905 0.0 0.714285714286 NC_045512.2:28865-28912 - 28865 28912 16 NotMaximal AUU NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28864;48;0&s=-&p=30&e=30&w=0&f=28865-28912-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28865-28912&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.1494 0.9945 0.966363114466 -7.39825423071 -7.52851875 0.37911875 NA 0.99467686798 0.706439850236 NA 0.094488035162 0.094488035162 0.541666666667 0.0 0.0 NC_045512.2:3210-3299 + 3210 3299 30 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3209;90;0&p=30&e=30&w=0&f=3210-3299", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3210-3299&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -7.15097333333 0.3543 5.16569127658 -1.38432069407 -8.05519 0.90421666667 0.448051440664 0.0174377340062 0.509689076998 0.0174377340062 0.82184925932 0.0174377340062 0.388888888889 0.294117647059 0.0 NC_045512.2:29475-29504 + 29475 29504 10 Maximal AUG Canonical N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29474;30;0&p=30&e=30&w=0&f=29475-29504", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29475-29504&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -7.15161 1.0 0.566666666667 -12.6204882353 -4.89281 -2.2588 1.0 0.995630799284 1.0 0.995630799284 1.0 0.995630799284 0.333333333333 0.0 0.0 NC_045512.2:13362-13460 - 13362 13460 33 NotMaximal ACG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13361;99;0&s=-&p=30&e=30&w=0&f=13362-13460-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13362-13460&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.16375757576 1.0 0.69696969697 -10.2784347826 -9.30021212121 2.13645454545 NA 1.0 1.0 NA 1.0 1.0 0.484848484848 0.860869565217 1.0 NC_045512.2:701-739 - 701 739 13 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;700;39;0&s=-&p=30&e=30&w=0&f=701-739-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:701-739&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.17126153846 1.0 1.10256410256 -6.50416744186 -9.05051538462 1.87925384616 NA 1.0 0.984346410549 NA 0.368347712844 0.368347712844 0.461538461538 0.975 0.692307692308 NC_045512.2:18143-18184 + 18143 18184 14 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18142;42;0&p=30&e=30&w=0&f=18143-18184", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18143-18184&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -7.17129285714 1.0 0.952380952381 -7.5298575 -7.30501428571 0.133721428574 NA 1.0 1.0 NA 0.890405339411 0.890405339411 0.428571428571 0.0 0.0 NC_045512.2:27037-27198 - 27037 27198 54 NotMaximal UUG NearCognate M =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27036;162;0&s=-&p=30&e=30&w=0&f=27037-27198-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27037-27198&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.17262592593 1.0 0.685185185185 -10.4681567568 -9.23647222222 2.06384629629 NA 1.0 0.996060556731 NA 1.0 0.996060556731 0.425925925926 0.680672268908 0.679012345679 NC_045512.2:15565-15597 - 15565 15597 11 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15564;33;0&s=-&p=30&e=30&w=0&f=15565-15597-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15565-15597&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.1823 1.0 1.12121212121 -6.40583513514 -16.7395090909 9.55720909091 NA 0.364759889305 0.452648543057 NA 0.813078300505 0.364759889305 0.333333333333 1.1 0.0 NC_045512.2:6398-6496 - 6398 6496 33 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6397;99;0&s=-&p=30&e=30&w=0&f=6398-6496-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6398-6496&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.18315151515 0.9813 0.761719636261 -9.43017768376 -4.37269090909 -2.81046060606 NA 0.094488035162 0.583125508709 NA 0.560026045906 0.094488035162 0.373737373737 0.589285714286 1.0 NC_045512.2:12243-12290 + 12243 12290 16 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12242;48;0&p=30&e=30&w=0&f=12243-12290", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12243-12290&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -7.188925 1.0 0.645833333333 -11.1312387097 -6.56454375 -0.62438125 NA 1.0 0.88406641706 NA 0.898840957187 0.686830538825 0.458333333333 0.428571428571 0.541666666667 NC_045512.2:16735-16791 - 16735 16791 19 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16734;57;0&s=-&p=30&e=30&w=0&f=16735-16791-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16735-16791&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.21030526316 1.0 0.877192982456 -8.219748 -10.4826052632 3.2723 NA 0.842891095556 0.890405339411 NA 0.433211785772 0.249246296598 0.385964912281 0.471074380165 0.0 NC_045512.2:29379-29588 - 29379 29588 70 Maximal ACG NearCognate N,ORF10 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29378;210;0&s=-&p=30&e=30&w=0&f=29379-29588-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29379-29588&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.21086142857 0.9942 0.580115013947 -12.4300548257 -6.03154857143 -1.17931285714 NA 1.0 0.0883998046557 NA 0.979977209832 0.0883998046557 0.438095238095 0.4 0.0 NC_045512.2:15247-15279 - 15247 15279 11 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15246;33;0&s=-&p=30&e=30&w=0&f=15247-15279-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15247-15279&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.21160909091 1.0 0.666666666667 -10.8174136364 -8.76390909091 1.5523 NA 1.0 1.0 NA 0.706439850236 0.706439850236 0.333333333333 0.0 0.727272727273 NC_045512.2:28259-28294 - 28259 28294 12 NotMaximal UUG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28258;36;0&s=-&p=30&e=30&w=0&f=28259-28294-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28259-28294&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.21396666667 0.9382 0.742783464591 -9.71207223984 -3.44275 -3.77121666667 NA 0.618326550545 0.59356666124 NA 0.681806934722 0.408513755494 0.361111111111 0.9 0.0 NC_045512.2:15793-15888 - 15793 15888 32 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15792;96;0&s=-&p=30&e=30&w=0&f=15793-15888-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15793-15888&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.2396625 1.0 0.739583333333 -9.78883943662 -11.29345625 4.05379375 0.94245808237 0.0174377340062 0.729838840957 0.0174377340062 1.0 0.0174377340062 0.333333333333 0.0 0.0625 NC_045512.2:29334-29447 + 29334 29447 38 Maximal AUA NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29333;114;0&p=30&e=30&w=0&f=29334-29447", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29334-29447&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -7.24292894737 0.9981 0.59719015677 -12.1283461646 -4.47301052632 -2.76991842105 NA 0.890405339411 1.0 NA 0.854699658147 0.745104997558 0.412280701754 0.417582417582 0.0 NC_045512.2:13362-13457 - 13362 13457 32 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13361;96;0&s=-&p=30&e=30&w=0&f=13362-13457-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13362-13457&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.254846875 1.0 0.708333333333 -10.2421367647 -9.286403125 2.03155625 NA 1.0 1.0 NA 1.0 1.0 0.479166666667 0.727272727273 1.0 NC_045512.2:12545-12574 - 12545 12574 10 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12544;30;0&s=-&p=30&e=30&w=0&f=12545-12574-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12545-12574&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.25924 1.0 0.9 -8.06582222222 -17.62009 10.36085 NA 0.48414129904 0.99726517988 NA 0.94439850236 0.48414129904 0.433333333333 0.0 0.0 NC_045512.2:28359-28574 + 28359 28574 72 NotMaximal AUG Canonical N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28358;216;0&p=30&e=30&w=0&f=28359-28574", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28359-28574&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -7.2595875 1.0 0.925925925926 -7.8403545 -4.64843333333 -2.61115416667 0.974706169624 1.0 1.0 0.974706169624 1.0 1.0 0.49537037037 0.983193277311 0.138888888889 NC_045512.2:14995-15030 - 14995 15030 12 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14994;36;0&s=-&p=30&e=30&w=0&f=14995-15030-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14995-15030&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.26065 1.0 0.861111111111 -8.43172258065 -9.296225 2.035575 NA 0.912111346248 0.890405339411 NA 0.677460524174 0.493495034999 0.361111111111 0.9 0.0 NC_045512.2:16360-16404 - 16360 16404 15 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16359;45;0&s=-&p=30&e=30&w=0&f=16360-16404-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16360-16404&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.26146 1.0 0.777777777778 -9.33616285714 -7.84164666667 0.580186666667 NA 1.0 0.981624613381 NA 0.850320690217 0.84423245971 0.422222222222 0.511363636364 0.666666666667 NC_045512.2:15247-15300 - 15247 15300 18 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15246;54;0&s=-&p=30&e=30&w=0&f=15247-15300-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15247-15300&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.26368888889 1.0 0.759259259259 -9.5668097561 -11.5066833333 4.24299444444 NA 1.0 1.0 NA 0.434829887677 0.434829887677 0.37037037037 0.0 0.444444444444 NC_045512.2:13118-13168 - 13118 13168 17 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13117;51;0&s=-&p=30&e=30&w=0&f=13118-13168-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13118-13168&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.27997647059 1.0 0.686274509804 -10.6079657143 -10.5802529412 3.30027647059 NA 0.993911769494 0.943330620218 NA 1.0 0.937242389712 0.43137254902 0.0 0.0 NC_045512.2:14995-15063 - 14995 15063 23 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14994;69;0&s=-&p=30&e=30&w=0&f=14995-15063-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14995-15063&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.28290869565 1.0 0.753623188406 -9.66385961538 -12.548773913 5.26586521739 NA 0.912111346248 0.890405339411 NA 1.0 0.706439850236 0.347826086957 0.985714285714 0.0 NC_045512.2:15247-15309 - 15247 15309 21 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15246;63;0&s=-&p=30&e=30&w=0&f=15247-15309-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15247-15309&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.2873 1.0 0.761904761905 -9.56458125 -10.6933761905 3.40607619048 NA 1.0 1.0 NA 0.457799120951 0.457799120951 0.349206349206 0.0 0.380952380952 NC_045512.2:15955-16002 - 15955 16002 16 Maximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15954;48;0&s=-&p=30&e=30&w=0&f=15955-16002-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15955-16002&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.288775 1.0 0.6875 -10.6018545455 -12.8365 5.547725 NA 1.0 1.0 NA 0.937333550383 0.937333550383 0.4375 0.979591836735 0.4375 NC_045512.2:13237-13281 + 13237 13281 15 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13236;45;0&p=30&e=30&w=0&f=13237-13281", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13237-13281&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -7.30022666667 1.0 0.933333333333 -7.82167142858 -15.0421133333 7.74188666666 NA 1.0 0.364759889305 NA 0.0174377340062 0.0174377340062 0.466666666667 0.865384615385 0.288888888889 NC_045512.2:425-484 - 425 484 20 NotMaximal ACG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;424;60;0&s=-&p=30&e=30&w=0&f=425-484-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:425-484&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.310335 1.0 1.41666666667 -5.16023647059 -9.987385 2.67705 NA 0.58996255901 0.582396223344 NA 0.731587172391 0.432801562754 0.416666666667 0.769230769231 0.55 NC_045512.2:24599-24631 - 24599 24631 11 NotMaximal AUU NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24598;33;0&s=-&p=30&e=30&w=0&f=24599-24631-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24599-24631&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.32070909091 1.0 0.909090909091 -8.05278 -15.8467818182 8.52607272727 NA 0.673322480873 1.0 NA 0.832690867654 0.506013348527 0.393939393939 0.0 1.0 NC_045512.2:13867-13905 - 13867 13905 13 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13866;39;0&s=-&p=30&e=30&w=0&f=13867-13905-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13867-13905&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.32552307692 1.0 0.794871794872 -9.21598064516 -8.90831538462 1.5827923077 NA 1.0 0.912111346248 NA 0.873983395735 0.873983395735 0.282051282051 0.0 0.769230769231 NC_045512.2:12246-12290 + 12246 12290 15 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12245;45;0&p=30&e=30&w=0&f=12246-12290", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12246-12290&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -7.32709333333 1.0 0.622222222222 -11.7756857143 -7.43701333333 0.109920000003 1.0 1.0 0.88406641706 0.88406641706 1.0 0.88406641706 0.444444444444 0.46875 0.511111111111 NC_045512.2:3206-3295 - 3206 3295 30 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3205;90;0&s=-&p=30&e=30&w=0&f=3206-3295-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3206-3295&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.32932666667 0.3698 5.02907802109 -1.45738973146 -8.91929333333 1.58996666666 NA 0.094488035162 0.850711378805 NA 0.0883998046557 0.0793000162787 0.4 0.278637770898 0.0 NC_045512.2:13413-13463 + 13413 13463 17 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13412;51;0&p=30&e=30&w=0&f=13413-13463", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13413-13463&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -7.33386470588 1.0 0.882352941176 -8.31171333333 -5.93254705882 -1.40131764706 NA 1.0 0.0174377340062 NA 1.0 0.0174377340062 0.490196078431 1.02 1.0 NC_045512.2:15793-15885 - 15793 15885 31 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15792;93;0&s=-&p=30&e=30&w=0&f=15793-15885-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15793-15885&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.33985483871 1.0 0.731182795699 -10.0383308824 -11.6793354839 4.33948064516 NA 0.0174377340062 0.729838840957 NA 1.0 0.0174377340062 0.333333333333 0.0 0.0645161290323 NC_045512.2:14062-14103 - 14062 14103 14 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14061;42;0&s=-&p=30&e=30&w=0&f=14062-14103-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14062-14103&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.35530714286 1.0 1.28571428571 -5.72079444445 -18.9224857143 11.5671785714 NA 0.706439850236 0.873410385805 NA 0.85362200879 0.625336154973 0.357142857143 0.84 0.0 NC_045512.2:13867-13902 - 13867 13902 12 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13866;36;0&s=-&p=30&e=30&w=0&f=13867-13902-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13867-13902&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.37758333333 1.0 0.638888888889 -11.5475217391 -8.14889166667 0.771308333337 NA 1.0 0.912111346248 NA 0.564199902328 0.564199902328 0.277777777778 0.0 0.833333333333 NC_045512.2:3206-3292 - 3206 3292 29 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3205;87;0&s=-&p=30&e=30&w=0&f=3206-3292-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3206-3292&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.38942068966 0.3796 5.20249450457 -1.42036107547 -9.20667931034 1.81725862068 NA 0.094488035162 0.850711378805 NA 0.0174377340062 0.0 0.390804597701 0.305263157895 0.0 NC_045512.2:29379-29582 - 29379 29582 68 NotMaximal AAG NearCognate N,ORF10 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29378;204;0&s=-&p=30&e=30&w=0&f=29379-29582-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29379-29582&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.40911470588 0.9946 0.592175103113 -12.5116957247 -5.94430147059 -1.46481323529 NA 1.0 0.0883998046557 NA 0.886000325574 0.0883998046557 0.436274509804 0.310975609756 0.0 NC_045512.2:13240-13281 + 13240 13281 14 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13239;42;0&p=30&e=30&w=0&f=13240-13281", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13240-13281&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -7.41387142857 1.0 0.952380952381 -7.784565 -15.7816071429 8.36773571429 NA 1.0 0.364759889305 NA 1.0 0.364759889305 0.47619047619 0.4375 0.238095238095 NC_045512.2:14995-15042 - 14995 15042 16 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14994;48;0&s=-&p=30&e=30&w=0&f=14995-15042-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14995-15042&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.4221125 1.0 0.833333333333 -8.906535 -11.928 4.5058875 NA 0.912111346248 0.890405339411 NA 0.895874979652 0.602314829888 0.333333333333 1.52380952381 0.0 NC_045512.2:15793-15855 - 15793 15855 21 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15792;63;0&s=-&p=30&e=30&w=0&f=15793-15855-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15793-15855&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.42862380952 1.0 0.825396825397 -9.00006346153 -12.9079 5.47927619048 NA 0.0174377340062 1.0 NA 0.981627869119 0.0174377340062 0.31746031746 0.0 0.0952380952381 NC_045512.2:14632-14682 - 14632 14682 17 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14631;51;0&s=-&p=30&e=30&w=0&f=14632-14682-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14632-14682&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.45051764706 1.0 0.705882352941 -10.5549 -11.8820529412 4.43153529412 NA 0.959661403223 0.452648543057 NA 1.0 0.452648543057 0.392156862745 0.53125 0.647058823529 NC_045512.2:12476-12511 - 12476 12511 12 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12475;36;0&s=-&p=30&e=30&w=0&f=12476-12511-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12476-12511&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.4575 1.0 0.972222222222 -7.67057142857 -19.3057916667 11.8482916667 NA 0.0174377340062 1.0 NA 0.568686309621 0.0174377340062 0.277777777778 0.0 0.333333333333 NC_045512.2:9663-9695 - 9663 9695 11 Maximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9662;33;0&s=-&p=30&e=30&w=0&f=9663-9695-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9663-9695&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.46148181818 1.0 1.09090909091 -6.83969166667 -4.23377272727 -3.22770909091 NA 0.094488035162 0.608832817841 NA 0.44354875468 0.0 0.363636363636 0.0 0.0 NC_045512.2:425-490 - 425 490 22 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;424;66;0&s=-&p=30&e=30&w=0&f=425-490-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:425-490&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.46272272727 1.0 1.43939393939 -5.18462842105 -11.0539363636 3.59121363637 NA 0.58996255901 0.582396223344 NA 0.754022464594 0.435168484454 0.424242424242 1.01538461538 0.5 NC_045512.2:14995-15039 - 14995 15039 15 NotMaximal ACG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14994;45;0&s=-&p=30&e=30&w=0&f=14995-15039-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14995-15039&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.46468666667 1.0 0.822222222222 -9.07867297298 -11.8344933333 4.36980666666 NA 0.912111346248 0.890405339411 NA 0.905772423897 0.700100927885 0.355555555556 1.42857142857 0.0 NC_045512.2:701-760 - 701 760 20 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;700;60;0&s=-&p=30&e=30&w=0&f=701-760-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:701-760&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.467665 1.0 0.983333333333 -7.59423559322 -9.42818 1.960515 1.0 1.0 0.984346410549 0.984346410549 1.0 0.984346410549 0.416666666667 0.769230769231 0.8 NC_045512.2:13022-13054 - 13022 13054 11 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13021;33;0&s=-&p=30&e=30&w=0&f=13022-13054-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13022-13054&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.4686 1.0 1.0 -7.4686 -11.6921636364 4.22356363636 NA 0.452648543057 1.0 NA 0.920247436106 0.452648543057 0.484848484848 0.0 0.0 NC_045512.2:27037-27177 - 27037 27177 47 NotMaximal AAG NearCognate M =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27036;141;0&s=-&p=30&e=30&w=0&f=27037-27177-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27037-27177&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.47497659574 1.0 0.765957446809 -9.75899722222 -9.96618297872 2.49120638298 NA 1.0 0.996060556731 NA 1.0 0.996060556731 0.432624113475 0.758064516129 0.702127659574 NC_045512.2:26099-26167 + 26099 26167 23 NotMaximal UUG NearCognate ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26098;69;0&p=30&e=30&w=0&f=26099-26167", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26099-26167&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -7.48336956522 0.9555 1.38303843888 -5.41081820636 -8.73867391304 1.25530434782 NA 0.288383525965 0.307354712681 NA 1.0 0.0 0.434782608696 0.92 0.869565217391 NC_045512.2:17014-17067 - 17014 17067 18 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17013;54;0&s=-&p=30&e=30&w=0&f=17014-17067-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17014-17067&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.49209444444 1.0 0.962962962963 -7.78025192307 -14.4681555556 6.97606111112 NA 0.770727657496 1.0 NA 0.548653752238 0.460765098486 0.314814814815 0.0 0.5 NC_045512.2:13118-13282 - 13118 13282 55 Maximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13117;165;0&s=-&p=30&e=30&w=0&f=13118-13282-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13118-13282&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.49224363636 1.0 0.860606060606 -8.70577605633 -13.7238763636 6.23163272728 NA 0.993911769494 0.0894774540127 NA 1.0 0.0174377340062 0.454545454545 0.352564102564 0.163636363636 NC_045512.2:12125-12181 - 12125 12181 19 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12124;57;0&s=-&p=30&e=30&w=0&f=12125-12181-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12125-12181&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.49598421053 1.0 1.19298245614 -6.28339852941 -15.3631210526 7.8671368421 NA 0.68075858701 0.992690867654 NA 0.697340061859 0.671658798633 0.438596491228 0.0 0.0 NC_045512.2:14632-14700 - 14632 14700 23 Maximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14631;69;0&s=-&p=30&e=30&w=0&f=14632-14700-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14632-14700&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.5031173913 1.0 0.724637681159 -10.354302 -12.6289 5.1257826087 NA 0.959661403223 0.452648543057 NA 1.0 0.452648543057 0.347826086957 0.511111111111 0.739130434783 NC_045512.2:13118-13279 - 13118 13279 54 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13117;162;0&s=-&p=30&e=30&w=0&f=13118-13279-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13118-13279&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.51785555556 1.0 0.876543209877 -8.57670845071 -14.0585277778 6.54067222222 NA 0.993911769494 0.0894774540127 NA 1.0 0.0174377340062 0.450617283951 0.366515837104 0.166666666667 NC_045512.2:13301-13402 - 13301 13402 34 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13300;102;0&s=-&p=30&e=30&w=0&f=13301-13402-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13301-13402&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.51947941176 1.0 0.686274509804 -10.9569557143 -10.6850617647 3.16558235295 NA 0.0174377340062 1.0 NA 0.890405339411 0.0174377340062 0.392156862745 0.515151515152 0.852941176471 NC_045512.2:16360-16422 - 16360 16422 21 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16359;63;0&s=-&p=30&e=30&w=0&f=16360-16422-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16360-16422&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.52110952381 1.0 0.888888888889 -8.46124821429 -11.4762333333 3.95512380952 NA 1.0 0.981624613381 NA 1.0 0.981624613381 0.428571428571 0.35 0.47619047619 NC_045512.2:27358-27408 - 27358 27408 17 NotMaximal AAG NearCognate ORF6,ORF7a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27357;51;0&s=-&p=30&e=30&w=0&f=27358-27408-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27358-27408&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.52697647059 0.9893 0.790589057758 -9.52071926208 -9.0295 1.50252352941 NA 1.0 0.085388246785 NA 0.0174377340062 0.0 0.313725490196 0.85 0.0 NC_045512.2:13588-13632 - 13588 13632 15 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13587;45;0&s=-&p=30&e=30&w=0&f=13588-13632-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13588-13632&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.53590666667 1.0 1.08888888889 -6.92073061225 -11.5321333333 3.99622666666 NA 0.890405339411 1.0 NA 0.706439850236 0.706439850236 0.355555555556 1.42857142857 0.266666666667 NC_045512.2:18146-18184 + 18146 18184 13 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18145;39;0&p=30&e=30&w=0&f=18146-18184", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18146-18184&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -7.54410769231 1.0 1.0 -7.54410769231 -6.83729230769 -0.706815384618 NA 1.0 1.0 NA 1.0 1.0 0.410256410256 0.0 0.0 NC_045512.2:425-505 - 425 505 27 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;424;81;0&s=-&p=30&e=30&w=0&f=425-505-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:425-505&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.54431111111 1.0 1.85185185185 -4.073928 -11.7722444444 4.22793333333 NA 0.58996255901 0.435998697705 NA 0.704597102393 0.251772749471 0.456790123457 0.947368421053 0.407407407407 NC_045512.2:12125-12427 - 12125 12427 101 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12124;303;0&s=-&p=30&e=30&w=0&f=12125-12427-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12125-12427&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.54531980198 1.0 0.676567656766 -11.1523507317 -9.03380693069 1.48848712871 NA 0.68075858701 0.0174377340062 NA 0.976900537197 0.0174377340062 0.392739273927 0.17667638484 0.574257425743 NC_045512.2:26105-26167 + 26105 26167 21 NotMaximal AUG Canonical ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26104;63;0&p=30&e=30&w=0&f=26105-26167", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26105-26167&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -7.54913333333 0.9513 1.43539130608 -5.25928595314 -8.86082857143 1.3116952381 0.094488035162 0.288383525965 0.307354712681 0.0 0.706439850236 0.0 0.444444444444 0.969230769231 0.857142857143 NC_045512.2:12125-12454 - 12125 12454 110 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12124;330;0&s=-&p=30&e=30&w=0&f=12125-12454-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12125-12454&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.55421636364 1.0 0.678787878788 -11.1289794643 -9.22931090909 1.67509454545 NA 0.68075858701 0.0174377340062 NA 0.364759889305 0.0174377340062 0.393939393939 0.16 0.6 NC_045512.2:15793-15867 - 15793 15867 25 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15792;75;0&s=-&p=30&e=30&w=0&f=15793-15867-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15793-15867&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.5551 1.0 0.773333333333 -9.76952586207 -12.32624 4.77114 NA 0.0174377340062 1.0 NA 0.978368875142 0.0174377340062 0.333333333333 0.0 0.08 NC_045512.2:27037-27147 - 27037 27147 37 NotMaximal CUG NearCognate M =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27036;111;0&s=-&p=30&e=30&w=0&f=27037-27147-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27037-27147&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.55698648649 1.0 0.765765765766 -9.86853529412 -9.88534324324 2.32835675675 NA 1.0 0.996060556731 NA 0.674797330295 0.670857887026 0.441441441441 0.925 0.693693693694 NC_045512.2:11367-11399 + 11367 11399 11 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;11366;33;0&p=30&e=30&w=0&f=11367-11399", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:11367-11399&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -7.56035454545 1.0 0.727272727273 -10.3954875 -1.05493636364 -6.50541818181 1.0 1.0 0.477942373433 0.477942373433 1.0 0.477942373433 0.454545454545 0.0 0.0 NC_045512.2:11048-11092 - 11048 11092 15 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;11047;45;0&s=-&p=30&e=30&w=0&f=11048-11092-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:11048-11092&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.56493333333 1.0 1.0 -7.56493333333 -16.8915066667 9.32657333334 NA 0.094488035162 0.304173856422 NA 1.0 0.094488035162 0.311111111111 0.0 0.0 NC_045512.2:28751-28816 - 28751 28816 22 NotMaximal UUG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28750;66;0&s=-&p=30&e=30&w=0&f=28751-28816-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28751-28816&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.57400454545 1.0 0.69696969697 -10.86705 -5.97242727273 -1.60157727272 NA 0.706439850236 0.912111346248 NA 1.0 0.706439850236 0.515151515152 0.456747404844 0.0 NC_045512.2:14851-14916 - 14851 14916 22 Maximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14850;66;0&s=-&p=30&e=30&w=0&f=14851-14916-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14851-14916&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.58190909091 1.0 0.757575757576 -10.00812 -13.0324181818 5.45050909091 NA 0.706439850236 1.0 NA 1.0 0.706439850236 0.333333333333 0.6875 0.0 NC_045512.2:12125-12457 - 12125 12457 111 Maximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12124;333;0&s=-&p=30&e=30&w=0&f=12125-12457-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12125-12457&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.58672522523 1.0 0.687687687688 -11.0322248908 -9.22229099099 1.63556576576 NA 0.68075858701 0.0174377340062 NA 0.362008790493 0.0174377340062 0.393393393393 0.158571428571 0.594594594595 NC_045512.2:14851-14907 - 14851 14907 19 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14850;57;0&s=-&p=30&e=30&w=0&f=14851-14907-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14851-14907&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.58842631579 1.0 0.771929824561 -9.83046136364 -12.6905421053 5.10211578947 NA 0.706439850236 1.0 NA 0.967351456943 0.673791307179 0.315789473684 1.26666666667 0.0 NC_045512.2:26060-26167 + 26060 26167 36 Maximal CUG NearCognate ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26059;108;0&p=30&e=30&w=0&f=26060-26167", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26060-26167&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -7.60245555556 0.9716 1.38360789151 -5.49466044695 -9.46016111111 1.85770555555 NA 0.288383525965 0.307354712681 NA 0.978368875142 0.0 0.398148148148 0.704347826087 0.916666666667 NC_045512.2:26102-26167 + 26102 26167 22 NotMaximal UUG NearCognate ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26101;66;0&p=30&e=30&w=0&f=26102-26167", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26102-26167&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -7.63042272727 0.9535 1.43075230732 -5.33315423518 -8.81783181818 1.18740909091 NA 0.288383525965 0.307354712681 NA 0.477942373433 0.0 0.439393939394 0.942857142857 0.863636363636 NC_045512.2:16735-16857 - 16735 16857 41 Maximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16734;123;0&s=-&p=30&e=30&w=0&f=16735-16857-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16735-16857&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.63054878049 1.0 0.837398373984 -9.11220873787 -10.4777097561 2.84716097561 NA 0.842891095556 0.890405339411 NA 0.975197786098 0.612417385642 0.365853658537 0.497975708502 0.0 NC_045512.2:12729-12770 + 12729 12770 14 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12728;42;0&p=30&e=30&w=0&f=12729-12770", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12729-12770&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -7.64837857143 1.0 0.666666666667 -11.4725678571 -5.5802 -2.06817857143 NA 0.0174377340062 1.0 NA 0.0174377340062 0.0174377340062 0.5 0.777777777778 0.0 NC_045512.2:12125-12355 - 12125 12355 77 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12124;231;0&s=-&p=30&e=30&w=0&f=12125-12355-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12125-12355&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.68501558442 1.0 0.709956709957 -10.8246256098 -8.92529350649 1.24027792207 NA 0.68075858701 0.0174377340062 NA 1.0 0.0174377340062 0.411255411255 0.217514124294 0.480519480519 NC_045512.2:14748-14777 + 14748 14777 10 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14747;30;0&p=30&e=30&w=0&f=14748-14777", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14748-14777&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -7.68587 1.0 0.433333333333 -17.7366230769 -6.04785 -1.63802 NA 0.364759889305 1.0 NA 0.678326550545 0.364759889305 0.366666666667 0.0 1.0 NC_045512.2:12125-12394 - 12125 12394 90 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12124;270;0&s=-&p=30&e=30&w=0&f=12125-12394-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12125-12394&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.69191555556 1.0 0.681481481481 -11.28705 -8.99707222222 1.30515666666 NA 0.68075858701 0.0174377340062 NA 1.0 0.0174377340062 0.396296296296 0.19955654102 0.522222222222 NC_045512.2:18880-18927 - 18880 18927 16 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18879;48;0&s=-&p=30&e=30&w=0&f=18880-18927-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18880-18927&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.69641875 1.0 0.958333333333 -8.03104565217 -16.83381875 9.1374 NA 0.355741494384 1.0 NA 0.416102881328 0.0 0.4375 0.923076923077 0.5625 NC_045512.2:15247-15282 - 15247 15282 12 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15246;36;0&s=-&p=30&e=30&w=0&f=15247-15282-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15247-15282&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.69985833333 1.0 0.694444444444 -11.087796 -8.99821666667 1.29835833334 NA 1.0 1.0 NA 0.869916978675 0.869916978675 0.333333333333 0.0 0.666666666667 NC_045512.2:3206-3298 - 3206 3298 31 Maximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3205;93;0&s=-&p=30&e=30&w=0&f=3206-3298-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3206-3298&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.70264516129 0.38 5.15100243845 -1.49536818383 -8.39203548387 0.689390322581 NA 0.094488035162 0.798007488198 NA 0.378339573498 0.0 0.397849462366 0.271929824561 0.0 NC_045512.2:13362-13454 - 13362 13454 31 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13361;93;0&s=-&p=30&e=30&w=0&f=13362-13454-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13362-13454&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.70369677419 1.0 0.666666666667 -11.5555451613 -9.70749032258 2.00379354839 NA 1.0 1.0 NA 0.912111346248 0.912111346248 0.494623655914 0.704545454545 1.0 NC_045512.2:12545-12580 - 12545 12580 12 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12544;36;0&s=-&p=30&e=30&w=0&f=12545-12580-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12545-12580&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.70915833333 1.0 1.02777777778 -7.5008027027 -14.740475 7.03131666667 NA 0.48414129904 0.99726517988 NA 0.962279016767 0.448735145694 0.444444444444 0.0 0.0 NC_045512.2:15793-15870 - 15793 15870 26 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15792;78;0&s=-&p=30&e=30&w=0&f=15793-15870-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15793-15870&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.72087692308 1.0 0.794871794872 -9.71336129033 -12.0867038462 4.36582692307 0.681722285528 0.0174377340062 1.0 0.0174377340062 1.0 0.0174377340062 0.333333333333 0.0 0.0769230769231 NC_045512.2:12125-12418 - 12125 12418 98 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12124;294;0&s=-&p=30&e=30&w=0&f=12125-12418-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12125-12418&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.72094081633 1.0 0.680272108844 -11.349783 -9.3150877551 1.59414693877 NA 0.68075858701 0.0174377340062 NA 1.0 0.0174377340062 0.391156462585 0.182835820896 0.561224489796 NC_045512.2:28613-28693 - 28613 28693 27 NotMaximal AUU NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28612;81;0&s=-&p=30&e=30&w=0&f=28613-28693-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28613-28693&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.72248518519 1.0 0.962962962963 -8.01950384616 -9.58858518519 1.8661 NA 0.993911769494 0.0174377340062 NA 0.570695100114 0.0174377340062 0.518518518519 0.190588235294 0.0 NC_045512.2:12861-12938 + 12861 12938 26 Maximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12860;78;0&p=30&e=30&w=0&f=12861-12938", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12861-12938&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -7.73068076923 1.0 0.653846153846 -11.8233941176 -5.26636538462 -2.46431538461 NA 1.0 1.0 NA 0.987712843887 0.987712843887 0.423076923077 0.0 0.730769230769 NC_045512.2:26063-26167 + 26063 26167 35 NotMaximal GUG NearCognate ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26062;105;0&p=30&e=30&w=0&f=26063-26167", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26063-26167&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -7.76836285714 0.9708 1.41361573603 -5.495385103 -9.69919428571 1.93083142857 NA 0.288383525965 0.307354712681 NA 0.432296923327 0.0 0.390476190476 0.753588516746 0.914285714286 NC_045512.2:13118-13264 - 13118 13264 49 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13117;147;0&s=-&p=30&e=30&w=0&f=13118-13264-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13118-13264&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.77189387755 1.0 0.863945578231 -8.99581417323 -12.9607346939 5.18884081633 NA 0.993911769494 0.0894774540127 NA 1.0 0.0174377340062 0.469387755102 0.374363327674 0.183673469388 NC_045512.2:27042-27080 - 27042 27080 13 Maximal ACG NearCognate M =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27041;39;0&s=-&p=30&e=30&w=0&f=27042-27080-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27042-27080&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.78943846154 0.9999 0.410256410256 -18.98675625 -6.12883076923 -1.66060769231 NA 1.0 0.085388246785 NA 0.996060556731 0.085388246785 0.461538461538 1.92592592593 0.846153846154 NC_045512.2:17509-17613 - 17509 17613 35 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17508;105;0&s=-&p=30&e=30&w=0&f=17509-17613-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17509-17613&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.79376 1.0 0.771428571429 -10.1030222222 -12.9012685714 5.10750857143 NA 0.623988279342 0.364759889305 NA 0.979023278528 0.0174377340062 0.419047619048 0.686274509804 0.285714285714 NC_045512.2:14792-14827 - 14792 14827 12 Maximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14791;36;0&s=-&p=30&e=30&w=0&f=14792-14827-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14792-14827&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.7939 1.0 0.472222222222 -16.5047294118 -11.308075 3.514175 NA 1.0 0.706439850236 NA 1.0 0.706439850236 0.333333333333 2.25 0.527777777778 NC_045512.2:14666-14749 + 14666 14749 28 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14665;84;0&p=30&e=30&w=0&f=14666-14749", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14666-14749&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -7.80035714286 1.0 0.511904761905 -15.2379069767 -6.02147857143 -1.77887857143 NA 1.0 1.0 NA 1.0 1.0 0.369047619048 0.358974358974 0.892857142857 NC_045512.2:15077-15109 + 15077 15109 11 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15076;33;0&p=30&e=30&w=0&f=15077-15109", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15077-15109&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -7.81686363636 1.0 0.454545454545 -17.1971 -6.56287272727 -1.25399090909 0.988201204623 0.886237994465 1.0 0.874439199088 1.0 0.886237994465 0.484848484848 1.03125 1.0 NC_045512.2:14851-14892 - 14851 14892 14 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14850;42;0&s=-&p=30&e=30&w=0&f=14851-14892-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14851-14892&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.81967857143 1.0 0.785714285714 -9.95231818182 -13.1680857143 5.34840714286 NA 0.706439850236 1.0 NA 0.994989418851 0.701429269087 0.285714285714 2.1 0.0 NC_045512.2:12125-12391 - 12125 12391 89 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12124;267;0&s=-&p=30&e=30&w=0&f=12125-12391-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12125-12391&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.82032247191 1.0 0.689138576779 -11.3479679348 -9.17752696629 1.35720449438 NA 0.68075858701 0.0174377340062 NA 1.0 0.0174377340062 0.397003745318 0.200375234522 0.516853932584 NC_045512.2:13118-13270 - 13118 13270 51 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13117;153;0&s=-&p=30&e=30&w=0&f=13118-13270-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13118-13270&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.83031960784 1.0 0.895424836601 -8.74480948905 -13.1854921569 5.35517254902 NA 0.993911769494 0.0894774540127 NA 0.765661728797 0.0174377340062 0.457516339869 0.379652605459 0.176470588235 NC_045512.2:12125-12376 - 12125 12376 84 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12124;252;0&s=-&p=30&e=30&w=0&f=12125-12376-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12125-12376&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.83036547619 1.0 0.694444444444 -11.2757262857 -9.11107857143 1.28071309524 NA 0.68075858701 0.0174377340062 NA 1.0 0.0174377340062 0.404761904762 0.201519392243 0.488095238095 NC_045512.2:13484-13564 + 13484 13564 27 Maximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13483;81;0&p=30&e=30&w=0&f=13484-13564", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13484-13564&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -7.84086296296 1.0 0.567901234568 -13.8067369565 -4.74137037037 -3.09949259259 NA 0.0174377340062 1.0 NA 1.0 0.0174377340062 0.493827160494 0.81 0.962962962963 NC_045512.2:13867-13950 - 13867 13950 28 Maximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13866;84;0&s=-&p=30&e=30&w=0&f=13867-13950-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13867-13950&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.84299642857 1.0 0.785714285714 -9.98199545454 -11.2249321429 3.38193571429 NA 1.0 0.912111346248 NA 0.587244017581 0.499355363829 0.285714285714 0.0 0.357142857143 NC_045512.2:20767-20799 - 20767 20799 11 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20766;33;0&s=-&p=30&e=30&w=0&f=20767-20799-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20767-20799&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.85824545455 1.0 0.69696969697 -11.274873913 -11.3892 3.53095454545 NA 0.364759889305 1.0 NA 0.842152042976 0.364759889305 0.333333333333 1.1 0.454545454545 NC_045512.2:13118-13273 - 13118 13273 52 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13117;156;0&s=-&p=30&e=30&w=0&f=13118-13273-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13118-13273&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.86127692308 1.0 0.910256410256 -8.63633239437 -13.92725 6.06597307692 0.983698518639 0.993911769494 0.0894774540127 0.0174377340062 1.0 0.0174377340062 0.455128205128 0.375 0.173076923077 NC_045512.2:16735-16776 - 16735 16776 14 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16734;42;0&s=-&p=30&e=30&w=0&f=16735-16776-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16735-16776&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.87034285714 1.0 1.0 -7.87034285714 -11.2920785714 3.42173571429 NA 0.842891095556 0.890405339411 NA 0.939339085138 0.570939280482 0.404761904762 0.583333333333 0.0 NC_045512.2:12125-12388 - 12125 12388 88 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12124;264;0&s=-&p=30&e=30&w=0&f=12125-12388-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12125-12388&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.87302272727 1.0 0.69696969697 -11.296076087 -9.23550681818 1.36248409091 NA 0.68075858701 0.0174377340062 NA 1.0 0.0174377340062 0.401515151515 0.198123827392 0.511363636364 NC_045512.2:17509-17610 - 17509 17610 34 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17508;102;0&s=-&p=30&e=30&w=0&f=17509-17610-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17509-17610&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.87525 1.0 0.774509803922 -10.1680443038 -11.7062794118 3.83102941176 NA 0.623988279342 0.364759889305 NA 0.823014813609 0.0174377340062 0.43137254902 0.666666666667 0.294117647059 NC_045512.2:6398-6511 - 6398 6511 38 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6397;114;0&s=-&p=30&e=30&w=0&f=6398-6511-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6398-6511&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.88944736842 0.9813 0.795579861913 -9.91660013798 -5.07168684211 -2.81776052631 NA 0.094488035162 0.32035161973 NA 0.477942373433 0.094488035162 0.359649122807 0.545454545455 1.0 NC_045512.2:13118-13183 - 13118 13183 22 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13117;66;0&s=-&p=30&e=30&w=0&f=13118-13183-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13118-13183&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.89377272727 1.0 0.742424242424 -10.6324285714 -11.4141 3.52032727273 NA 0.993911769494 0.943330620218 NA 1.0 0.937242389712 0.454545454545 0.0 0.0 NC_045512.2:18154-18228 - 18154 18228 25 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18153;75;0&s=-&p=30&e=30&w=0&f=18154-18228-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18154-18228&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.906624 1.0 0.76 -10.4034526316 -12.233304 4.32668 NA 0.51667263552 1.0 NA 0.809210483477 0.51667263552 0.373333333333 0.0 0.0 NC_045512.2:20515-20550 - 20515 20550 12 Maximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20514;36;0&s=-&p=30&e=30&w=0&f=20515-20550-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20515-20550&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.91525833333 1.0 1.22222222222 -6.47612045454 -29.2024833333 21.287225 NA 0.754497802377 0.440957187042 NA 0.939990232785 0.440957187042 0.25 0.0 0.0 NC_045512.2:15247-15276 - 15247 15276 10 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15246;30;0&s=-&p=30&e=30&w=0&f=15247-15276-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15247-15276&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.91956 1.0 0.6 -13.1992666667 -7.60139 -0.31817 NA 1.0 1.0 NA 0.540530685333 0.540530685333 0.3 0.0 0.8 NC_045512.2:16180-16224 - 16180 16224 15 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16179;45;0&s=-&p=30&e=30&w=0&f=16180-16224-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16180-16224&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.92934666667 1.0 0.8 -9.91168333334 -9.80922 1.87987333333 0.553267133322 0.656249389549 1.0 0.346687286342 1.0 0.656249389549 0.444444444444 0.46875 0.0 NC_045512.2:10586-10663 - 10586 10663 26 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10585;78;0&s=-&p=30&e=30&w=0&f=10586-10663-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10586-10663&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.93374615385 1.0 1.01282051282 -7.83331898735 -14.2717269231 6.33798076923 NA 0.706439850236 0.571268110044 NA 0.917548429106 0.304851049976 0.410256410256 0.305882352941 0.0 NC_045512.2:13636-13704 - 13636 13704 23 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13635;69;0&s=-&p=30&e=30&w=0&f=13636-13704-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13636-13704&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.96069130435 1.0 0.913043478261 -8.71885238095 -15.7538652174 7.79317391304 NA 0.983005046394 0.267455640566 NA 0.452648543057 0.0174377340062 0.275362318841 0.0 0.0 NC_045512.2:26288-26326 + 26288 26326 13 Maximal AUA NearCognate E =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26287;39;0&p=30&e=30&w=0&f=26288-26326", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26288-26326&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -7.96714615385 1.0 0.410256410256 -19.41991875 -5.84074615385 -2.1264 NA 1.0 0.701246947745 NA 1.0 0.701246947745 0.384615384615 1.39285714286 0.0 NC_045512.2:14062-14094 - 14062 14094 11 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14061;33;0&s=-&p=30&e=30&w=0&f=14062-14094-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14062-14094&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.96779090909 1.0 1.18181818182 -6.74197692308 -17.7794 9.81160909091 NA 0.706439850236 0.873410385805 NA 0.983942699007 0.673387595637 0.333333333333 0.0 0.0 NC_045512.2:11189-11269 - 11189 11269 27 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;11188;81;0&s=-&p=30&e=30&w=0&f=11189-11269-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:11189-11269&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.97501481481 1.0 0.679012345679 -11.7450218182 -13.5361851852 5.56117037038 NA 0.890405339411 0.685990558359 NA 0.368347712844 0.094488035162 0.407407407407 0.304511278195 0.0 NC_045512.2:13243-13281 + 13243 13281 13 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13242;39;0&p=30&e=30&w=0&f=13243-13281", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13243-13281&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -7.98165384615 1.0 0.974358974359 -8.19169736842 -16.5382769231 8.55662307693 NA 1.0 0.364759889305 NA 1.0 0.364759889305 0.461538461538 0.541666666667 0.179487179487 NC_045512.2:13867-13899 - 13867 13899 11 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13866;33;0&s=-&p=30&e=30&w=0&f=13867-13899-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13867-13899&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -7.99385454545 1.0 0.515151515152 -15.5174823529 -8.49424545455 0.500390909095 NA 1.0 0.912111346248 NA 0.985866840306 0.897978186554 0.272727272727 0.0 0.909090909091 NC_045512.2:82-111 + 82 111 10 NotMaximal AUC NearCognate =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;81;30;0&p=30&e=30&w=0&f=82-111", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:82-111&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -8.00375 0.9682 0.758301898534 -10.5548331284 -9.07974 1.07599 NA 0.685248250041 0.941227413316 NA 0.923206902165 0.604352922025 0.566666666667 0.416666666667 0.0 NC_045512.2:17509-17607 - 17509 17607 33 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17508;99;0&s=-&p=30&e=30&w=0&f=17509-17607-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17509-17607&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.0099 1.0 0.69696969697 -11.4924652174 -12.2713333333 4.26143333333 NA 0.623988279342 0.364759889305 NA 1.0 0.0174377340062 0.434343434343 0.671945701357 0.30303030303 NC_045512.2:27643-27681 - 27643 27681 13 NotMaximal AAG NearCognate ORF7a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27642;39;0&s=-&p=30&e=30&w=0&f=27643-27681-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27643-27681&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.01506153846 1.0 1.46153846154 -5.48398947368 -10.6316153846 2.61655384616 NA 0.789692332736 0.974706169624 NA 0.343053882468 0.343053882468 0.384615384615 0.0 0.0 NC_045512.2:16735-16773 - 16735 16773 13 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16734;39;0&s=-&p=30&e=30&w=0&f=16735-16773-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16735-16773&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.02030769231 1.0 1.0 -8.02030769231 -9.78578461538 1.76547692307 NA 0.842891095556 0.890405339411 NA 0.914846166368 0.568813283412 0.435897435897 0.541666666667 0.0 NC_045512.2:28426-28464 + 28426 28464 13 Maximal UUG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28425;39;0&p=30&e=30&w=0&f=28426-28464", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28426-28464&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -8.02086923077 1.0 0.538461538462 -14.8959 -9.05286153846 1.03199230769 NA 0.624476640078 0.636500081393 NA 1.0 0.611206251017 0.512820512821 0.40625 0.0 NC_045512.2:20767-20805 - 20767 20805 13 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20766;39;0&s=-&p=30&e=30&w=0&f=20767-20805-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20767-20805&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.02729230769 1.0 0.692307692308 -11.5949777778 -13.6115769231 5.58428461539 NA 0.364759889305 1.0 NA 1.0 0.364759889305 0.333333333333 0.928571428571 0.538461538462 NC_045512.2:15068-15109 + 15068 15109 14 Maximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15067;42;0&p=30&e=30&w=0&f=15068-15109", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15068-15109&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -8.02852142857 1.0 0.452380952381 -17.7472578947 -5.92889285714 -2.09962857143 NA 0.886237994465 1.0 NA 0.967289597916 0.861732052743 0.428571428571 1.03703703704 1.0 NC_045512.2:6398-6508 - 6398 6508 37 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6397;111;0&s=-&p=30&e=30&w=0&f=6398-6508-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6398-6508&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.03191621622 0.9813 0.789539929769 -10.1729069213 -4.45669459459 -3.57522162163 NA 0.094488035162 0.32035161973 NA 0.488562591568 0.0174377340062 0.369369369369 0.531100478469 1.0 NC_045512.2:19167-19208 + 19167 19208 14 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19166;42;0&p=30&e=30&w=0&f=19167-19208", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19167-19208&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -8.0419 1.0 0.928571428571 -8.66050769231 -6.99137142857 -1.05052857143 NA 0.0174377340062 0.0174377340062 NA 0.89440013023 0.0174377340062 0.380952380952 0.7 0.0 NC_045512.2:13416-13463 + 13416 13463 16 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13415;48;0&p=30&e=30&w=0&f=13416-13463", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13416-13463&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -8.04375 1.0 0.9375 -8.58 -6.36925 -1.6745 NA 1.0 0.0174377340062 NA 0.956369851864 0.0174377340062 0.479166666667 1.2 1.0 NC_045512.2:13980-14018 + 13980 14018 13 Maximal ACG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13979;39;0&p=30&e=30&w=0&f=13980-14018", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13980-14018&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -8.04980769231 1.0 0.871794871795 -9.23360294118 -11.6734769231 3.62366923077 NA 0.455953117369 1.0 NA 0.266788214228 0.0174377340062 0.384615384615 1.39285714286 0.0 NC_045512.2:13636-13701 - 13636 13701 22 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13635;66;0&s=-&p=30&e=30&w=0&f=13636-13701-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13636-13701&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.05892272727 1.0 0.924242424242 -8.71949016393 -14.2659636364 6.20704090909 NA 0.983005046394 0.267455640566 NA 0.763115741494 0.0174377340062 0.287878787879 0.0 0.0 NC_045512.2:14654-14749 + 14654 14749 32 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14653;96;0&p=30&e=30&w=0&f=14654-14749", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14654-14749&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -8.0637125 1.0 0.510416666667 -15.7982938776 -5.756396875 -2.307315625 NA 1.0 0.890405339411 NA 0.83159042813 0.83159042813 0.354166666667 0.336842105263 0.90625 NC_045512.2:17509-17619 - 17509 17619 37 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17508;111;0&s=-&p=30&e=30&w=0&f=17509-17619-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17509-17619&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.0659027027 1.0 0.792792792793 -10.1740363636 -12.5389378378 4.47303513514 NA 0.623988279342 0.364759889305 NA 0.333954094091 0.0 0.414414414414 0.660714285714 0.27027027027 NC_045512.2:18703-18777 - 18703 18777 25 Maximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18702;75;0&s=-&p=30&e=30&w=0&f=18703-18777-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18703-18777&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.0692 1.0 1.17333333333 -6.87715909091 -19.141412 11.072212 NA 0.703372944815 0.890405339411 NA 1.0 0.703372944815 0.346666666667 0.887573964497 0.0 NC_045512.2:9703-9735 + 9703 9735 11 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9702;33;0&p=30&e=30&w=0&f=9703-9735", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9703-9735&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -8.07354545455 1.0 1.24242424242 -6.4982195122 -14.0939727273 6.02042727272 NA 0.890405339411 0.706439850236 NA 1.0 0.706439850236 0.30303030303 0.0 0.0 NC_045512.2:11048-11086 - 11048 11086 13 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;11047;39;0&s=-&p=30&e=30&w=0&f=11048-11086-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:11048-11086&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.08416153846 1.0 1.10256410256 -7.33214651163 -18.6782769231 10.5941153846 NA 0.094488035162 0.304173856422 NA 0.73288295621 0.094488035162 0.333333333333 0.0 0.0 NC_045512.2:24854-24901 - 24854 24901 16 NotMaximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24853;48;0&s=-&p=30&e=30&w=0&f=24854-24901-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24854-24901&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.09035625 1.0 1.47916666667 -5.46953661972 -21.38096875 13.2906125 NA 0.0174377340062 0.605482663194 NA 0.994989418851 0.0174377340062 0.354166666667 0.0 0.625 NC_045512.2:14281-14313 - 14281 14313 11 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14280;33;0&s=-&p=30&e=30&w=0&f=14281-14313-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14281-14313&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.0904 1.0 0.878787878788 -9.20631724138 -15.3544909091 7.26409090909 NA 0.480582777145 1.0 NA 0.673706657985 0.461377177275 0.272727272727 1.65 0.0 NC_045512.2:16735-16851 - 16735 16851 39 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16734;117;0&s=-&p=30&e=30&w=0&f=16735-16851-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16735-16851&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.09162307692 1.0 0.846153846154 -9.56282727272 -10.7036615385 2.61203846154 NA 0.842891095556 0.890405339411 NA 0.951665310109 0.588884909653 0.358974358974 0.535469107551 0.0 NC_045512.2:29173-29292 + 29173 29292 40 Maximal UUG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29172;120;0&p=30&e=30&w=0&f=29173-29292", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29173-29292&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -8.0998725 1.0 0.675 -11.9998111111 -8.73484 0.6349675 NA 1.0 0.362604590591 NA 1.0 0.362604590591 0.533333333333 0.938416422287 0.0 NC_045512.2:12125-12262 - 12125 12262 46 NotMaximal ACG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12124;138;0&s=-&p=30&e=30&w=0&f=12125-12262-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12125-12262&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.10701086957 1.0 0.833333333333 -9.72841304348 -9.78020217391 1.67319130434 NA 0.68075858701 0.364759889305 NA 0.771287644473 0.0 0.405797101449 0.368983957219 0.45652173913 NC_045512.2:3206-3274 - 3206 3274 23 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3205;69;0&s=-&p=30&e=30&w=0&f=3206-3274-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3206-3274&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.11085652174 0.4565 4.90882478645 -1.65230108521 -11.4155086957 3.30465217391 NA 0.094488035162 0.840605567312 NA 0.0174377340062 0.0174377340062 0.405797101449 0.353846153846 0.0 NC_045512.2:27643-27675 - 27643 27675 11 NotMaximal UUG NearCognate ORF7a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27642;33;0&s=-&p=30&e=30&w=0&f=27643-27675-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27643-27675&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.11481818182 1.0 1.48484848485 -5.46508163265 -11.9610090909 3.84619090909 NA 0.789692332736 1.0 NA 0.912111346248 0.605726843562 0.393939393939 0.0 0.0 NC_045512.2:14705-14749 + 14705 14749 15 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14704;45;0&p=30&e=30&w=0&f=14705-14749", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14705-14749&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -8.11556666667 1.0 0.6 -13.5259444445 -7.54468 -0.57088666667 NA 1.0 1.0 NA 1.0 1.0 0.377777777778 0.0 0.8 NC_045512.2:26959-26988 + 26959 26988 10 Maximal GUG NearCognate M =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26958;30;0&p=30&e=30&w=0&f=26959-26988", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26959-26988&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -8.12249 1.0 1.1 -7.38408181818 -4.97788 -3.14461 NA 0.567921211135 1.0 NA 1.0 0.567921211135 0.5 0.535714285714 0.0 NC_045512.2:18154-18234 - 18154 18234 27 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18153;81;0&s=-&p=30&e=30&w=0&f=18154-18234-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18154-18234&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.12731111111 1.0 0.765432098765 -10.6179387097 -13.2871814815 5.15987037037 NA 0.51667263552 1.0 NA 1.0 0.51667263552 0.358024691358 0.0 0.0 NC_045512.2:12125-12163 - 12125 12163 13 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12124;39;0&s=-&p=30&e=30&w=0&f=12125-12163-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12125-12163&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.13879230769 1.0 1.38461538462 -5.87801666667 -17.6985923077 9.5598 NA 0.68075858701 1.0 NA 1.0 0.68075858701 0.435897435897 0.0 0.0 NC_045512.2:12125-12298 - 12125 12298 58 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12124;174;0&s=-&p=30&e=30&w=0&f=12125-12298-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12125-12298&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.14670344828 1.0 0.770114942529 -10.5785552239 -9.63034137931 1.48363793103 NA 0.68075858701 0.0174377340062 NA 1.0 0.0174377340062 0.408045977011 0.28903654485 0.396551724138 NC_045512.2:12125-12304 - 12125 12304 60 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12124;180;0&s=-&p=30&e=30&w=0&f=12125-12304-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12125-12304&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.14714166667 1.0 0.761111111111 -10.7042737226 -9.36072833333 1.21358666666 NA 0.68075858701 0.0174377340062 NA 0.435116392642 0.0174377340062 0.4 0.292207792208 0.383333333333 NC_045512.2:258-422 + 258 422 55 Maximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;257;165;0&p=30&e=30&w=0&f=258-422", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:258-422&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -8.15102545455 1.0 0.866680850639 -9.40487544929 -5.92112909091 -2.22989636364 NA 0.681933908514 0.0174377340062 NA 0.960266970536 0.0174377340062 0.50303030303 0.87250293772 0.418181818182 NC_045512.2:27028-27081 + 27028 27081 18 NotMaximal CUG NearCognate M =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27027;54;0&p=30&e=30&w=0&f=27028-27081", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27028-27081&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -8.15458333333 0.9999 0.481481481481 -16.9364423077 -7.19225555556 -0.962327777774 NA 1.0 0.0174377340062 NA 0.872153670845 0.0174377340062 0.462962962963 1.38461538462 0.888888888889 NC_045512.2:11614-11676 + 11614 11676 21 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;11613;63;0&p=30&e=30&w=0&f=11614-11676", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:11614-11676&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -8.15546190476 1.0 1.09523809524 -7.44629130435 -9.35154285714 1.19608095238 NA 0.669109555592 1.0 NA 1.0 0.669109555592 0.349206349206 0.538461538462 0.0 NC_045512.2:13118-13258 - 13118 13258 47 NotMaximal ACG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13117;141;0&s=-&p=30&e=30&w=0&f=13118-13258-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13118-13258&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.15587021277 1.0 0.900709219858 -9.05494251969 -12.9842148936 4.82834468085 NA 0.993911769494 0.0894774540127 NA 0.0174377340062 0.0174377340062 0.460992907801 0.408301158301 0.191489361702 NC_045512.2:28613-28735 - 28613 28735 41 Maximal AUU NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28612;123;0&s=-&p=30&e=30&w=0&f=28613-28735-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28613-28735&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.15857560976 1.0 1.0243902439 -7.96432380953 -14.6388097561 6.48023414634 NA 0.993911769494 0.0174377340062 NA 0.890405339411 0.0174377340062 0.49593495935 0.264516129032 0.0 NC_045512.2:14792-14824 - 14792 14824 11 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14791;33;0&s=-&p=30&e=30&w=0&f=14792-14824-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14792-14824&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.16903636364 1.0 0.515151515152 -15.8575411765 -11.6296545455 3.46061818181 NA 1.0 0.706439850236 NA 0.694077812144 0.694077812144 0.333333333333 2.35714285714 0.484848484848 NC_045512.2:13754-13783 - 13754 13783 10 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13753;30;0&s=-&p=30&e=30&w=0&f=13754-13783-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13754-13783&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.17265 1.0 0.433333333333 -18.8599615385 -7.55238 -0.62027 NA 1.0 1.0 NA 1.0 1.0 0.4 0.857142857143 1.0 NC_045512.2:12125-12196 - 12125 12196 24 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12124;72;0&s=-&p=30&e=30&w=0&f=12125-12196-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12125-12196&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.17779583333 1.0 1.13888888889 -7.18050365853 -13.9901416667 5.81234583334 NA 0.68075858701 0.992690867654 NA 0.814615008953 0.495373595963 0.416666666667 0.0 0.0 NC_045512.2:357-422 + 357 422 22 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;356;66;0&p=30&e=30&w=0&f=357-422", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:357-422&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -8.18026818182 1.0 1.27272727273 -6.42735357143 -6.38533636364 -1.79493181818 NA 0.681933908514 0.423949210483 NA 0.515998697705 0.0174377340062 0.5 0.507692307692 0.0 NC_045512.2:13332-13463 + 13332 13463 44 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13331;132;0&p=30&e=30&w=0&f=13332-13463", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13332-13463&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -8.20076363636 1.0 0.69696969697 -11.7663130435 -5.98905909091 -2.21170454545 NA 1.0 0.0174377340062 NA 0.912111346248 0.0174377340062 0.462121212121 0.711206896552 1.0 NC_045512.2:26093-26167 + 26093 26167 25 NotMaximal AUA NearCognate ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26092;75;0&p=30&e=30&w=0&f=26093-26167", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26093-26167&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -8.203252 0.9591 1.47239536377 -5.57136500279 -9.382952 1.1797 NA 0.288383525965 0.307354712681 NA 0.094488035162 0.0 0.4 1.0 0.88 NC_045512.2:25300-25329 + 25300 25329 10 NotMaximal CUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25299;30;0&p=30&e=30&w=0&f=25300-25329", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25300-25329&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -8.20432 1.0 1.6 -5.1277 -8.95978 0.75546 NA 0.884951977861 0.865111509035 NA 0.094488035162 0.0174377340062 0.433333333333 0.0 1.0 NC_045512.2:28865-29140 - 28865 29140 92 Maximal CUG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28864;276;0&s=-&p=30&e=30&w=0&f=28865-29140-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28865-29140&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.21507065217 0.998 1.11044125677 -7.39802362538 -11.5397543478 3.32468369566 NA 0.99467686798 0.0174377340062 NA 1.0 0.0174377340062 0.489130434783 0.30303030303 0.0 NC_045512.2:8441-8473 - 8441 8473 11 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8440;33;0&s=-&p=30&e=30&w=0&f=8441-8473-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8441-8473&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.2186 1.0 0.969696969697 -8.47543125 -12.3572818182 4.13868181818 NA 0.43524987791 1.0 NA 0.253840143252 0.085388246785 0.333333333333 2.2 0.0 NC_045512.2:18154-18231 - 18154 18231 26 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18153;78;0&s=-&p=30&e=30&w=0&f=18154-18231-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18154-18231&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.23208846154 1.0 0.794871794872 -10.3564983871 -12.5453230769 4.31323461538 NA 0.51667263552 1.0 NA 0.402926908677 0.267305876608 0.358974358974 0.0 0.0 NC_045512.2:15955-15993 - 15955 15993 13 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15954;39;0&s=-&p=30&e=30&w=0&f=15955-15993-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15955-15993&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.23284615385 1.0 0.769230769231 -10.7027 -15.9718846154 7.73903846153 NA 1.0 1.0 NA 1.0 1.0 0.435897435897 1.3 0.307692307692 NC_045512.2:12125-12259 - 12125 12259 45 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12124;135;0&s=-&p=30&e=30&w=0&f=12125-12259-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12125-12259&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.23566888889 1.0 0.814814814815 -10.1074118182 -10.0591066667 1.82343777778 NA 0.68075858701 0.364759889305 NA 1.0 0.0174377340062 0.4 0.194805194805 0.444444444444 NC_045512.2:12125-12310 - 12125 12310 62 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12124;186;0&s=-&p=30&e=30&w=0&f=12125-12310-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12125-12310&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.24952903226 1.0 0.758064516129 -10.8823574468 -9.53045645161 1.28092741935 NA 0.68075858701 0.0174377340062 NA 1.0 0.0174377340062 0.397849462366 0.285057471264 0.387096774194 NC_045512.2:12125-12364 - 12125 12364 80 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12124;240;0&s=-&p=30&e=30&w=0&f=12125-12364-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12125-12364&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.2497275 1.0 0.729166666667 -11.313912 -8.81206625 0.56233875 NA 0.68075858701 0.0174377340062 NA 0.81672798307 0.0174377340062 0.408333333333 0.210526315789 0.4625 NC_045512.2:11189-11278 - 11189 11278 30 Maximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;11188;90;0&s=-&p=30&e=30&w=0&f=11189-11278-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:11189-11278&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.25172333333 1.0 0.788888888889 -10.4599309859 -13.8934133333 5.64169 NA 0.890405339411 0.685990558359 NA 0.676513104346 0.470841608335 0.4 0.292207792208 0.0 NC_045512.2:15703-15759 - 15703 15759 19 Maximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15702;57;0&s=-&p=30&e=30&w=0&f=15703-15759-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15703-15759&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.25270526316 1.0 1.10526315789 -7.46673333334 -17.7190894737 9.46638421052 NA 0.0174377340062 0.884317108904 NA 1.0 0.0174377340062 0.385964912281 0.471074380165 0.0526315789474 NC_045512.2:28865-29128 - 28865 29128 88 NotMaximal AUU NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28864;264;0&s=-&p=30&e=30&w=0&f=28865-29128-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28865-29128&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.25762045455 0.9979 1.11167343511 -7.42809911057 -11.0877181818 2.83009772727 NA 0.99467686798 0.0174377340062 NA 0.475129415595 0.0 0.484848484848 0.322265625 0.0 NC_045512.2:18005-18049 + 18005 18049 15 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18004;45;0&p=30&e=30&w=0&f=18005-18049", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18005-18049&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -8.26115333333 1.0 1.31111111111 -6.30087966101 -7.71361333333 -0.547539999997 NA 0.996060556731 0.495861956699 NA 0.0174377340062 0.0174377340062 0.377777777778 0.642857142857 0.0 NC_045512.2:425-508 - 425 508 28 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;424;84;0&s=-&p=30&e=30&w=0&f=425-508-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:425-508&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.26145357143 1.0 1.90476190476 -4.337263125 -12.5180107143 4.25655714286 0.750906723099 0.58996255901 0.435998697705 0.27227413316 1.0 0.294888490965 0.452380952381 0.933333333333 0.392857142857 NC_045512.2:18703-18750 - 18703 18750 16 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18702;48;0&s=-&p=30&e=30&w=0&f=18703-18750-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18703-18750&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.26606875 1.0 1.1875 -6.9609 -16.4760375 8.20996875 NA 0.703372944815 0.890405339411 NA 0.862992023441 0.599101416246 0.375 0.592592592593 0.0 NC_045512.2:27358-27444 - 27358 27444 29 NotMaximal AAG NearCognate ORF6,ORF7a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27357;87;0&s=-&p=30&e=30&w=0&f=27358-27444-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27358-27444&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.28006206897 0.9937 1.52092002236 -5.44411405414 -12.8666172414 4.58655517241 NA 1.0 0.085388246785 NA 0.477942373433 0.085388246785 0.367816091954 0.682352941176 0.0 NC_045512.2:28613-28723 - 28613 28723 37 NotMaximal AUU NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28612;111;0&s=-&p=30&e=30&w=0&f=28613-28723-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28613-28723&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.28901621622 1.0 1.07207207207 -7.73177142857 -14.9337567568 6.64474054054 NA 0.993911769494 0.0174377340062 NA 0.970623473873 0.0174377340062 0.504504504505 0.283524904215 0.0 NC_045512.2:13588-13626 - 13588 13626 13 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13587;39;0&s=-&p=30&e=30&w=0&f=13588-13626-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13588-13626&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.30215384615 1.0 1.20512820513 -6.88902127659 -11.8041538462 3.502 NA 0.890405339411 1.0 NA 0.0174377340062 0.0174377340062 0.358974358974 1.625 0.307692307692 NC_045512.2:14717-14749 + 14717 14749 11 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14716;33;0&p=30&e=30&w=0&f=14717-14749", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14717-14749&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -8.30730909091 1.0 0.727272727273 -11.42255 -8.28428181818 -0.0230272727282 NA 1.0 1.0 NA 1.0 1.0 0.363636363636 0.0 0.727272727273 NC_045512.2:15610-15648 - 15610 15648 13 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15609;39;0&s=-&p=30&e=30&w=0&f=15610-15648-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15610-15648&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.30968461538 1.0 0.897435897436 -9.25936285714 -12.3278307692 4.01814615385 NA 0.800680449292 0.917548429106 NA 0.792078788865 0.71279179554 0.333333333333 0.0 0.0 NC_045512.2:28865-29122 - 28865 29122 86 NotMaximal UUG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28864;258;0&s=-&p=30&e=30&w=0&f=28865-29122-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28865-29122&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.31429186047 0.9979 1.11039452274 -7.48769170792 -11.2409872093 2.92669534883 NA 0.99467686798 0.0174377340062 NA 1.0 0.0174377340062 0.488372093023 0.325100806452 0.0 NC_045512.2:13301-13339 - 13301 13339 13 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13300;39;0&s=-&p=30&e=30&w=0&f=13301-13339-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13301-13339&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.33042307692 1.0 0.717948717949 -11.6030892857 -11.8159769231 3.48555384616 NA 0.0174377340062 1.0 NA 1.0 0.0174377340062 0.307692307692 0.0 0.615384615385 NC_045512.2:18703-18753 - 18703 18753 17 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18702;51;0&s=-&p=30&e=30&w=0&f=18703-18753-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18703-18753&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.33096470588 1.0 1.19607843137 -6.96523278688 -18.8410705882 10.5101058824 NA 0.703372944815 0.890405339411 NA 0.486091486245 0.460371154159 0.352941176471 0.62962962963 0.0 NC_045512.2:12318-12440 + 12318 12440 41 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12317;123;0&p=30&e=30&w=0&f=12318-12440", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12318-12440&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -8.34285121951 1.0 0.569105691057 -14.6595814286 -6.4541804878 -1.88867073171 NA 0.0174377340062 0.26726355201 NA 1.0 0.0174377340062 0.39837398374 0.0 0.878048780488 NC_045512.2:28613-28726 - 28613 28726 38 NotMaximal AGG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28612;114;0&s=-&p=30&e=30&w=0&f=28613-28726-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28613-28726&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.34313947368 1.0 1.05263157895 -7.9259825 -14.7840763158 6.44093684211 NA 0.993911769494 0.0174377340062 NA 0.706439850236 0.0174377340062 0.508771929825 0.271105826397 0.0 NC_045512.2:28865-29116 - 28865 29116 84 NotMaximal UUG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28864;252;0&s=-&p=30&e=30&w=0&f=28865-29116-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28865-29116&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.34902142857 0.9978 1.11302296376 -7.50121219454 -11.1300511905 2.78102976191 NA 0.99467686798 0.0174377340062 NA 1.0 0.0174377340062 0.488095238095 0.333157059757 0.0 NC_045512.2:28320-28385 - 28320 28385 22 NotMaximal UUG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28319;66;0&s=-&p=30&e=30&w=0&f=28320-28385-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28320-28385&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.35269545455 0.9867 1.18181818182 -7.06766538462 -8.6717 0.31900454545 NA 1.0 0.843480384177 NA 0.851115090347 0.829483965489 0.545454545455 0.838095238095 0.484848484848 NC_045512.2:27358-27447 - 27358 27447 30 NotMaximal AUA NearCognate ORF6,ORF7a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27357;90;0&s=-&p=30&e=30&w=0&f=27358-27447-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27358-27447&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.36388666667 0.9939 1.49244491051 -5.60415101943 -12.5627366667 4.19885 NA 1.0 0.085388246785 NA 0.68114601986 0.0 0.355555555556 0.705882352941 0.0 NC_045512.2:351-422 + 351 422 24 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;350;72;0&p=30&e=30&w=0&f=351-422", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:351-422&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -8.37652083333 1.0 1.23611111111 -6.77651123595 -7.3435625 -1.03295833333 NA 0.681933908514 0.423949210483 NA 1.0 0.423949210483 0.513888888889 0.447204968944 0.0 NC_045512.2:12309-12440 + 12309 12440 44 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12308;132;0&p=30&e=30&w=0&f=12309-12440", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12309-12440&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -8.38171363636 1.0 0.568181818182 -14.751816 -6.53008636364 -1.85162727272 NA 0.0174377340062 0.26726355201 NA 1.0 0.0174377340062 0.401515151515 0.0 0.886363636364 NC_045512.2:29151-29213 - 29151 29213 21 Maximal ACG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29150;63;0&s=-&p=30&e=30&w=0&f=29151-29213-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29151-29213&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.39115714286 1.0 0.714285714286 -11.74762 -10.7288809524 2.33772380952 NA 0.984346410549 0.890405339411 NA 1.0 0.874751749959 0.492063492063 0.807692307692 0.0 NC_045512.2:13118-13219 - 13118 13219 34 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13117;102;0&s=-&p=30&e=30&w=0&f=13118-13219-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13118-13219&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.39285 1.0 0.921568627451 -9.10713510638 -14.5392441176 6.14639411765 NA 0.993911769494 0.943330620218 NA 1.0 0.937242389712 0.441176470588 0.204 0.0 NC_045512.2:13778-13831 + 13778 13831 18 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13777;54;0&p=30&e=30&w=0&f=13778-13831", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13778-13831&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -8.397 1.0 0.611111111111 -13.7405454545 -4.06005555556 -4.33694444444 NA 0.0174377340062 0.0174377340062 NA 0.838137717727 0.0174377340062 0.388888888889 1.65306122449 0.203703703704 NC_045512.2:1227-1256 - 1227 1256 10 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1226;30;0&s=-&p=30&e=30&w=0&f=1227-1256-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1227-1256&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.39872 1.0 0.966666666667 -8.68833103448 -14.13414 5.73542 0.926335666612 0.292749470943 1.0 0.094488035162 1.0 0.292749470943 0.366666666667 0.0 0.733333333333 NC_045512.2:11189-11233 - 11189 11233 15 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;11188;45;0&s=-&p=30&e=30&w=0&f=11189-11233-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:11189-11233&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.40610666667 1.0 0.644444444444 -13.0439586207 -13.72852 5.32241333333 NA 0.890405339411 0.891662054371 NA 1.0 0.685990558359 0.377777777778 0.0 0.0 NC_045512.2:12870-12938 + 12870 12938 23 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12869;69;0&p=30&e=30&w=0&f=12870-12938", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12870-12938&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -8.41523043478 1.0 0.652173913043 -12.9033533333 -5.08517391304 -3.33005652174 NA 1.0 1.0 NA 0.434829887677 0.434829887677 0.420289855072 0.0 0.797101449275 NC_045512.2:17532-17573 + 17532 17573 14 Maximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17531;42;0&p=30&e=30&w=0&f=17532-17573", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17532-17573&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -8.42123571429 1.0 0.952380952381 -8.8422975 -9.48735 1.06611428571 NA 0.930779749308 0.761139508384 NA 1.0 0.686299853492 0.571428571429 0.875 0.0 NC_045512.2:14708-14749 + 14708 14749 14 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14707;42;0&p=30&e=30&w=0&f=14708-14749", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14708-14749&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -8.42748571429 1.0 0.642857142857 -13.1094222222 -7.7715 -0.65598571429 NA 1.0 1.0 NA 0.865899397688 0.865899397688 0.380952380952 0.0 0.785714285714 NC_045512.2:28865-29089 - 28865 29089 75 NotMaximal UUG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28864;225;0&s=-&p=30&e=30&w=0&f=28865-29089-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28865-29089&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.43474133333 0.9976 1.08658571941 -7.76261014905 -10.694044 2.25930266667 NA 0.99467686798 0.0174377340062 NA 1.0 0.0174377340062 0.48 0.231481481481 0.0 NC_045512.2:425-553 - 425 553 43 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;424;129;0&s=-&p=30&e=30&w=0&f=425-553-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:425-553&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.44298837209 1.0 2.0 -4.22149418604 -15.8021488372 7.35916046512 NA 0.58996255901 0.319394432688 NA 1.0 0.294888490965 0.46511627907 0.723905723906 0.325581395349 NC_045512.2:15175-15225 - 15175 15225 17 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15174;51;0&s=-&p=30&e=30&w=0&f=15175-15225-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15175-15225&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.44534705882 1.0 0.764705882353 -11.0439153846 -14.1332176471 5.68787058824 NA 0.684447338434 1.0 NA 0.551974605242 0.368009116067 0.411764705882 0.463636363636 0.0 NC_045512.2:17751-17780 + 17751 17780 10 Maximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17750;30;0&p=30&e=30&w=0&f=17751-17780", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17751-17780&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -8.45034 1.0 0.766666666667 -11.0221826087 -11.08399 2.63365 NA 0.774774540127 1.0 NA 1.0 0.774774540127 0.333333333333 0.0 0.0 NC_045512.2:15487-15549 - 15487 15549 21 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15486;63;0&s=-&p=30&e=30&w=0&f=15487-15549-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15487-15549&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.45415238095 1.0 0.84126984127 -10.0492754717 -14.6003190476 6.14616666667 NA 0.655686146834 1.0 NA 0.975884746866 0.655686146834 0.412698412698 0.372781065089 0.0 NC_045512.2:28613-28708 - 28613 28708 32 NotMaximal GUG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28612;96;0&s=-&p=30&e=30&w=0&f=28613-28708-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28613-28708&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.454553125 1.0 1.125 -7.51515833333 -15.192828125 6.738275 NA 0.993911769494 0.0174377340062 NA 1.0 0.0174377340062 0.5 0.167832167832 0.0 NC_045512.2:29172-29264 + 29172 29264 31 NotMaximal AUU NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29171;93;0&p=30&e=30&w=0&f=29172-29264", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29172-29264&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -8.45818064516 1.0 0.612903225806 -13.8001894737 -7.78786774194 -0.670312903225 NA 0.890405339411 0.649770470454 NA 0.917548429106 0.623988279342 0.548387096774 1.14461538462 0.0 NC_045512.2:27358-27483 - 27358 27483 42 Maximal AAG NearCognate ORF6,ORF7a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27357;126;0&s=-&p=30&e=30&w=0&f=27358-27483-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27358-27483&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.45850952381 0.9957 1.38349239639 -6.11388219108 -13.046297619 4.58778809524 NA 1.0 0.085388246785 NA 0.094488035162 0.085388246785 0.373015873016 0.458181818182 0.0 NC_045512.2:13338-13463 + 13338 13463 42 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13337;126;0&p=30&e=30&w=0&f=13338-13463", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13338-13463&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -8.46617857143 1.0 0.698412698413 -12.1220284091 -6.23258095238 -2.23359761905 1.0 1.0 0.0174377340062 0.0174377340062 1.0 0.0174377340062 0.460317460317 0.75 1.0 NC_045512.2:648-683 + 648 683 12 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;647;36;0&p=30&e=30&w=0&f=648-683", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:648-683&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -8.46664166667 1.0 1.0 -8.46664166667 -6.29910833333 -2.16753333334 NA 1.0 1.0 NA 1.0 1.0 0.555555555556 1.125 0.833333333333 NC_045512.2:84-140 + 84 140 19 Maximal CUG NearCognate =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;83;57;0&p=30&e=30&w=0&f=84-140", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:84-140&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -8.46890526316 0.9589 0.888709853654 -9.52943778933 -10.3064052632 1.8375 NA 0.094488035162 0.747999348852 NA 0.966521243692 0.0174377340062 0.473684210526 0.626373626374 0.0 NC_045512.2:27358-27456 - 27358 27456 33 NotMaximal UUG NearCognate ORF6,ORF7a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27357;99;0&s=-&p=30&e=30&w=0&f=27358-27456-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27358-27456&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.47694242424 0.9945 1.51838426208 -5.58287031548 -14.1131181818 5.63617575758 NA 1.0 0.085388246785 NA 1.0 0.085388246785 0.363636363636 0.613003095975 0.0 NC_045512.2:20725-20754 - 20725 20754 10 Maximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20724;30;0&s=-&p=30&e=30&w=0&f=20725-20754-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20725-20754&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.48429 1.0 0.7 -12.1204142857 -5.596 -2.88829 NA 0.0174377340062 1.0 NA 0.094488035162 0.0174377340062 0.333333333333 0.0 0.8 NC_045512.2:28865-29080 - 28865 29080 72 NotMaximal AUU NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28864;216;0&s=-&p=30&e=30&w=0&f=28865-29080-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28865-29080&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.51223333333 0.9975 1.09482308735 -7.77498522973 -9.98798055556 1.47574722223 NA 0.99467686798 0.0174377340062 NA 0.653423408758 0.0174377340062 0.486111111111 0.235123367199 0.0 NC_045512.2:425-463 - 425 463 13 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;424;39;0&s=-&p=30&e=30&w=0&f=425-463-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:425-463&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.52071538462 1.0 1.66666666667 -5.11242923077 -11.3581384615 2.83742307692 NA 0.58996255901 0.582396223344 NA 0.901250203484 0.465918932118 0.410256410256 0.65 0.384615384615 NC_045512.2:12125-12175 - 12125 12175 17 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12124;51;0&s=-&p=30&e=30&w=0&f=12125-12175-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12125-12175&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.52367647059 1.0 1.27450980392 -6.68780769231 -17.6080058824 9.08432941176 NA 0.68075858701 0.992690867654 NA 0.94439850236 0.62515708937 0.43137254902 0.0 0.0 NC_045512.2:27865-27894 + 27865 27894 10 NotMaximal AUA NearCognate ORF7b,ORF8 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27864;30;0&p=30&e=30&w=0&f=27865-27894", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27865-27894&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -8.52542 0.7749 1.36577228016 -6.24219727097 -8.67811 0.15269 NA 0.706439850236 0.301699495361 NA 0.301699495361 0.301699495361 0.366666666667 2.14285714286 0.0333333333333 NC_045512.2:14765-14854 + 14765 14854 30 Maximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14764;90;0&p=30&e=30&w=0&f=14765-14854", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14765-14854&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -8.52769333333 1.0 0.522222222222 -16.3296255319 -5.63283333333 -2.89486 NA 0.912111346248 1.0 NA 0.890405339411 0.706439850236 0.366666666667 0.661764705882 0.722222222222 NC_045512.2:27915-27944 - 27915 27944 10 NotMaximal GUG NearCognate ORF8 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27914;30;0&s=-&p=30&e=30&w=0&f=27915-27944-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27915-27944&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.53306 0.6979 6.73883403754 -1.26625169168 -24.06333 15.53027 NA 0.337737261924 0.623040859515 NA 0.561517174019 0.094488035162 0.433333333333 0.0 0.5 NC_045512.2:12125-12247 - 12125 12247 41 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12124;123;0&s=-&p=30&e=30&w=0&f=12125-12247-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12125-12247&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.53709512195 1.0 0.861788617886 -9.90625188679 -10.7568170732 2.21972195122 NA 0.68075858701 0.364759889305 NA 1.0 0.0174377340062 0.382113821138 0.241176470588 0.390243902439 NC_045512.2:28865-29104 - 28865 29104 80 NotMaximal ACG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28864;240;0&s=-&p=30&e=30&w=0&f=28865-29104-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28865-29104&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.5371475 0.9977 1.13950744528 -7.49196289619 -11.54364375 3.00649625 NA 0.99467686798 0.0174377340062 NA 0.683255738239 0.0174377340062 0.4875 0.350672121566 0.0 NC_045512.2:16735-16764 - 16735 16764 10 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16734;30;0&s=-&p=30&e=30&w=0&f=16735-16764-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16735-16764&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.56378 1.0 0.9 -9.51531111111 -8.05871 -0.50507 NA 0.842891095556 0.890405339411 NA 0.0174377340062 0.0174377340062 0.466666666667 0.0 0.0 NC_045512.2:29379-29552 - 29379 29552 58 NotMaximal UUG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29378;174;0&s=-&p=30&e=30&w=0&f=29379-29552-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29379-29552&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.56714310345 0.9965 0.653266501663 -13.1143156455 -6.97983965517 -1.58730344828 NA 1.0 0.094488035162 NA 1.0 0.094488035162 0.436781609195 0.122621564482 0.0 NC_045512.2:16360-16425 - 16360 16425 22 Maximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16359;66;0&s=-&p=30&e=30&w=0&f=16360-16425-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16360-16425&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.56784545455 1.0 0.969696969697 -8.835590625 -10.7361363636 2.16829090909 NA 1.0 0.758062835748 NA 0.452648543057 0.452648543057 0.424242424242 0.338461538462 0.454545454545 NC_045512.2:12387-12440 + 12387 12440 18 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12386;54;0&p=30&e=30&w=0&f=12387-12440", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12387-12440&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -8.56944444444 1.0 0.592592592593 -14.4609375 -5.84109444444 -2.72835 NA 0.0174377340062 0.706439850236 NA 1.0 0.0174377340062 0.37037037037 0.0 1.0 NC_045512.2:8198-8230 - 8198 8230 11 Maximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8197;33;0&s=-&p=30&e=30&w=0&f=8198-8230-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8198-8230&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.57018181818 1.0 1.09090909091 -7.856 -15.8216363636 7.25145454546 NA 0.094488035162 1.0 NA 0.637795865212 0.094488035162 0.30303030303 0.0 0.0 NC_045512.2:29151-29210 - 29151 29210 20 NotMaximal CUG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29150;60;0&s=-&p=30&e=30&w=0&f=29151-29210-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29151-29210&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.57262 1.0 0.716666666667 -11.9617953488 -11.023395 2.450775 NA 0.984346410549 0.890405339411 NA 0.364759889305 0.0174377340062 0.483333333333 0.588235294118 0.0 NC_045512.2:12125-12286 - 12125 12286 54 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12124;162;0&s=-&p=30&e=30&w=0&f=12125-12286-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12125-12286&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.58242222222 1.0 0.814814814815 -10.5329727273 -9.79963888889 1.21721666667 NA 0.68075858701 0.0174377340062 NA 1.0 0.0174377340062 0.401234567901 0.329268292683 0.425925925926 NC_045512.2:15219-15257 + 15219 15257 13 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15218;39;0&p=30&e=30&w=0&f=15219-15257", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15219-15257&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -8.59366153846 1.0 0.641025641026 -13.406112 -10.2009769231 1.60731538462 NA 0.0 0.244076184275 NA 0.928113299691 0.0 0.333333333333 0.0 0.435897435897 NC_045512.2:14851-14883 - 14851 14883 11 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14850;33;0&s=-&p=30&e=30&w=0&f=14851-14883-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14851-14883&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.59422727273 1.0 0.909090909091 -9.45365 -15.6351090909 7.04088181818 NA 0.706439850236 1.0 NA 1.0 0.706439850236 0.272727272727 0.0 0.0 NC_045512.2:28613-28705 - 28613 28705 31 NotMaximal AUC NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28612;93;0&s=-&p=30&e=30&w=0&f=28613-28705-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28613-28705&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.60745806452 1.0 1.13978494624 -7.5518264151 -13.3234903226 4.71603225806 NA 0.993911769494 0.0174377340062 NA 0.773394107114 0.0174377340062 0.494623655914 0.178846153846 0.0 NC_045512.2:425-514 - 425 514 30 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;424;90;0&s=-&p=30&e=30&w=0&f=425-514-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:425-514&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.61405 1.0 1.87777777778 -4.58736390533 -13.4393133333 4.82526333333 0.728435617776 0.58996255901 0.435998697705 0.0174377340062 1.0 0.294888490965 0.455555555556 0.857142857143 0.366666666667 NC_045512.2:18703-18768 - 18703 18768 22 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18702;66;0&s=-&p=30&e=30&w=0&f=18703-18768-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18703-18768&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.62150909091 1.0 1.09090909091 -7.90305 -18.5429363636 9.92142727273 NA 0.703372944815 0.890405339411 NA 0.982445059417 0.703372944815 0.348484848485 1.0 0.0 NC_045512.2:9468-9503 - 9468 9503 12 Maximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9467;36;0&s=-&p=30&e=30&w=0&f=9468-9503-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9468-9503&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.62305833333 1.0 0.833333333333 -10.34767 -8.50174166667 -0.121316666663 NA 1.0 1.0 NA 0.094488035162 0.094488035162 0.416666666667 0.0 0.0 NC_045512.2:6289-6321 + 6289 6321 11 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6288;33;0&p=30&e=30&w=0&f=6289-6321", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6289-6321&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -8.62403636364 0.9813 0.895535248037 -9.63003564913 -14.5998909091 5.97585454545 NA 0.412316457757 0.706439850236 NA 0.981299039557 0.412316457757 0.424242424242 0.6875 0.0 NC_045512.2:13803-13841 + 13803 13841 13 Maximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13802;39;0&p=30&e=30&w=0&f=13803-13841", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13803-13841&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -8.62503846154 1.0 0.717948717949 -12.0134464286 -8.55859230769 -0.0664461538477 NA 0.956936350317 0.587084486407 NA 0.881640892072 0.452648543057 0.410256410256 0.619047619048 0.0 NC_045512.2:12321-12440 + 12321 12440 40 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12320;120;0&p=30&e=30&w=0&f=12321-12440", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12321-12440&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -8.6258075 1.0 0.583333333333 -14.7870985714 -6.1421675 -2.48364 NA 0.0174377340062 0.26726355201 NA 1.0 0.0174377340062 0.391666666667 0.0 0.875 NC_045512.2:27359-27394 + 27359 27394 12 Maximal AUG Canonical ORF6,ORF7a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27358;36;0&p=30&e=30&w=0&f=27359-27394", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27359-27394&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -8.62634166667 0.9849 0.842223387379 -10.2423440098 -6.36035833333 -2.26598333334 0.912111346248 1.0 0.468842585056 0.380953931304 1.0 0.468842585056 0.361111111111 0.9 0.0 NC_045512.2:27042-27077 - 27042 27077 12 NotMaximal CUG NearCognate M =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27041;36;0&s=-&p=30&e=30&w=0&f=27042-27077-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27042-27077&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.63306666667 1.0 0.444444444444 -19.4244 -6.72634166667 -1.906725 NA 1.0 0.085388246785 NA 1.0 0.085388246785 0.444444444444 1.6875 0.833333333333 NC_045512.2:15824-15895 + 15824 15895 24 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15823;72;0&p=30&e=30&w=0&f=15824-15895", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15824-15895&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -8.63345416667 1.0 0.638888888889 -13.5132326087 -7.67847916667 -0.954975000003 NA 1.0 1.0 NA 1.0 1.0 0.402777777778 0.0 0.0 NC_045512.2:15338-15388 - 15338 15388 17 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15337;51;0&s=-&p=30&e=30&w=0&f=15338-15388-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15338-15388&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.65878235294 1.0 0.823529411765 -10.5142357143 -7.66405882353 -0.994723529411 NA 0.630349991861 0.997883770145 NA 0.96726355201 0.607784470129 0.470588235294 0.728571428571 0.764705882353 NC_045512.2:12303-12440 + 12303 12440 46 Maximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12302;138;0&p=30&e=30&w=0&f=12303-12440", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12303-12440&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -8.65951521739 1.0 0.594202898551 -14.5733304878 -6.73080652174 -1.92870869565 NA 0.0174377340062 0.26726355201 NA 0.435116392642 0.0174377340062 0.391304347826 0.0 0.855072463768 NC_045512.2:17509-17565 - 17509 17565 19 NotMaximal ACG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17508;57;0&s=-&p=30&e=30&w=0&f=17509-17565-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17509-17565&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.66664736842 1.0 0.789473684211 -10.9777533333 -11.6140631579 2.94741578947 NA 0.623988279342 0.869047696565 NA 0.639085137555 0.558193065278 0.456140350877 1.03636363636 0.0 NC_045512.2:29460-29504 + 29460 29504 15 Maximal CUG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29459;45;0&p=30&e=30&w=0&f=29460-29504", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29460-29504&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -8.66917333333 1.0 0.688888888889 -12.584283871 -5.46923333333 -3.19994 NA 0.995630799284 1.0 NA 1.0 0.995630799284 0.4 0.0 0.0 NC_045512.2:14771-14854 + 14771 14854 28 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14770;84;0&p=30&e=30&w=0&f=14771-14854", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14771-14854&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -8.67258928571 1.0 0.535714285714 -16.1888333333 -6.07237142857 -2.60021785714 NA 0.912111346248 1.0 NA 1.0 0.912111346248 0.357142857143 0.746666666667 0.702380952381 NC_045512.2:26066-26167 + 26066 26167 34 NotMaximal UUG NearCognate ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26065;102;0&p=30&e=30&w=0&f=26066-26167", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26066-26167&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -8.67519705882 0.9699 1.39636914003 -6.21268174018 -10.2694147059 1.59421764706 NA 0.288383525965 0.307354712681 NA 0.615852189484 0.0 0.382352941176 0.818181818182 0.911764705882 NC_045512.2:15487-15555 - 15487 15555 23 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15486;69;0&s=-&p=30&e=30&w=0&f=15487-15555-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15487-15555&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.67824347826 1.0 0.855072463768 -10.1491322034 -15.0194652174 6.34122173913 NA 0.655686146834 1.0 NA 0.958499104672 0.631180205112 0.391304347826 0.379120879121 0.0 NC_045512.2:29160-29264 + 29160 29264 35 NotMaximal CUG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29159;105;0&p=30&e=30&w=0&f=29160-29264", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29160-29264&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -8.68137714286 1.0 0.638095238095 -13.6051432836 -7.90920571429 -0.772171428574 NA 0.890405339411 0.649770470454 NA 1.0 0.649770470454 0.52380952381 1.11405835544 0.0 NC_045512.2:28731-28889 - 28731 28889 53 Maximal AAG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28730;159;0&s=-&p=30&e=30&w=0&f=28731-28889-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28731-28889&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.6861 1.0 0.867924528302 -10.0078978261 -11.4810283019 2.79492830189 NA 0.094488035162 0.670529057464 NA 0.568217483314 0.094488035162 0.496855345912 0.616279069767 0.0 NC_045512.2:26087-26149 - 26087 26149 21 Maximal AUG Canonical ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26086;63;0&s=-&p=30&e=30&w=0&f=26087-26149-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26087-26149&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.69452857143 0.9699 1.72110559179 -5.05171130283 -9.08937619048 0.394847619046 0.477942373433 0.706439850236 0.368347712844 0.094488035162 1.0 0.094488035162 0.365079365079 0.969230769231 0.857142857143 NC_045512.2:13301-13345 - 13301 13345 15 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13300;45;0&s=-&p=30&e=30&w=0&f=13301-13345-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13301-13345&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.71022666667 1.0 0.711111111111 -12.24875625 -9.61470666667 0.904479999997 NA 0.0174377340062 1.0 NA 0.540488360736 0.0174377340062 0.355555555556 0.0 0.666666666667 NC_045512.2:24854-24892 - 24854 24892 13 NotMaximal AUA NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24853;39;0&s=-&p=30&e=30&w=0&f=24854-24892-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24854-24892&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.71046153846 1.0 1.4358974359 -6.06621428571 -19.7039692308 10.9935076923 NA 0.0174377340062 1.0 NA 0.608842585056 0.0174377340062 0.333333333333 0.0 0.769230769231 NC_045512.2:29247-29276 - 29247 29276 10 Maximal CUG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29246;30;0&s=-&p=30&e=30&w=0&f=29247-29276-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29247-29276&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.71312 1.0 0.7 -12.4473142857 -4.26403 -4.44909 NA 1.0 0.706439850236 NA 0.0174377340062 0.0174377340062 0.566666666667 0.833333333333 0.0 NC_045512.2:12174-12203 + 12174 12203 10 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12173;30;0&p=30&e=30&w=0&f=12174-12203", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12174-12203&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -8.726 1.0 0.833333333333 -10.4712 -12.5596 3.8336 0.94439850236 1.0 1.0 0.94439850236 1.0 1.0 0.3 0.0 0.133333333333 NC_045512.2:19189-19224 - 19189 19224 12 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19188;36;0&s=-&p=30&e=30&w=0&f=19189-19224-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19189-19224&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.73523333333 1.0 1.0 -8.73523333333 -17.4110166667 8.67578333334 NA 0.276405664985 1.0 NA 0.975972651799 0.276405664985 0.333333333333 1.02857142857 0.0 NC_045512.2:12390-12440 + 12390 12440 17 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12389;51;0&p=30&e=30&w=0&f=12390-12440", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12390-12440&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -8.73725294118 1.0 0.627450980392 -13.924996875 -5.96741176471 -2.76984117647 1.0 0.0174377340062 0.706439850236 0.0174377340062 1.0 0.0174377340062 0.392156862745 0.0 1.0 NC_045512.2:13986-14018 + 13986 14018 11 NotMaximal ACG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13985;33;0&p=30&e=30&w=0&f=13986-14018", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13986-14018&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -8.75640909091 1.0 0.878787878788 -9.96418965517 -12.7450090909 3.9886 NA 0.455953117369 1.0 NA 0.685990558359 0.250281621358 0.363636363636 0.942857142857 0.0 NC_045512.2:28751-28828 - 28751 28828 26 Maximal ACG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28750;78;0&s=-&p=30&e=30&w=0&f=28751-28828-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28751-28828&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.76295769231 1.0 0.782051282051 -11.2050934426 -7.0666 -1.69635769231 NA 0.706439850236 0.632375061045 NA 0.44354875468 0.0 0.525641025641 0.55980861244 0.0 NC_045512.2:15338-15403 - 15338 15403 22 Maximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15337;66;0&s=-&p=30&e=30&w=0&f=15338-15403-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15338-15403&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.77269090909 1.0 0.772727272727 -11.3528941176 -8.83669090909 0.0640000000009 NA 0.630349991861 0.997883770145 NA 0.592974116881 0.590857887026 0.439393939394 0.970588235294 0.590909090909 NC_045512.2:11501-11587 - 11501 11587 29 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;11500;87;0&s=-&p=30&e=30&w=0&f=11501-11587-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:11501-11587&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.78657241379 1.0 0.850574712644 -10.3301594595 -13.7866 5.00002758621 NA 0.493628520267 0.094488035162 NA 0.289412339248 0.085388246785 0.35632183908 0.0 0.758620689655 NC_045512.2:20515-20547 - 20515 20547 11 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20514;33;0&s=-&p=30&e=30&w=0&f=20515-20547-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20515-20547&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.79866363636 1.0 1.21212121212 -7.2588975 -31.1170909091 22.3184272727 NA 0.754497802377 0.440957187042 NA 1.0 0.440957187042 0.242424242424 0.0 0.0 NC_045512.2:29151-29207 - 29151 29207 19 NotMaximal AAG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29150;57;0&s=-&p=30&e=30&w=0&f=29151-29207-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29151-29207&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.79957368421 1.0 0.719298245614 -12.2335536585 -10.8445368421 2.0449631579 NA 0.984346410549 0.890405339411 NA 1.0 0.874751749959 0.473684210526 0.647727272727 0.0 NC_045512.2:13252-13281 + 13252 13281 10 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13251;30;0&p=30&e=30&w=0&f=13252-13281", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13252-13281&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -8.80072 1.0 0.933333333333 -9.42934285714 -18.65133 9.85061 NA 1.0 0.364759889305 NA 1.0 0.364759889305 0.5 0.681818181818 0.0 NC_045512.2:14062-14091 - 14062 14091 10 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14061;30;0&s=-&p=30&e=30&w=0&f=14062-14091-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14062-14091&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.803 1.0 1.13333333333 -7.76735294118 -12.4987 3.6957 NA 0.706439850236 0.873410385805 NA 0.617844701286 0.389558847469 0.333333333333 0.0 0.0 NC_045512.2:29154-29264 + 29154 29264 37 Maximal AAG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29153;111;0&p=30&e=30&w=0&f=29154-29264", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29154-29264&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -8.80377837838 1.0 0.630630630631 -13.9602771429 -7.64717567568 -1.1566027027 NA 0.890405339411 0.649770470454 NA 0.706439850236 0.649770470454 0.513513513514 1.09359605911 0.0 NC_045512.2:16141-16170 - 16141 16170 10 Maximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16140;30;0&s=-&p=30&e=30&w=0&f=16141-16170-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16141-16170&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.81814 1.0 0.8 -11.022675 -14.62953 5.81139 NA 0.832964349666 0.0174377340062 NA 0.874335015465 0.0174377340062 0.3 0.0 0.0 NC_045512.2:276-422 + 276 422 49 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;275;147;0&p=30&e=30&w=0&f=276-422", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:276-422&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -8.82399387755 1.0 0.959183673469 -9.19948297872 -6.53070204082 -2.29329183673 NA 0.681933908514 0.0174377340062 NA 1.0 0.0174377340062 0.503401360544 0.969230769231 0.401360544218 NC_045512.2:14813-14854 + 14813 14854 14 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14812;42;0&p=30&e=30&w=0&f=14813-14854", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14813-14854&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -8.83252142857 1.0 0.547619047619 -16.1289521739 -9.47067857143 0.638157142859 NA 0.912111346248 1.0 NA 1.0 0.912111346248 0.309523809524 0.0 0.904761904762 NC_045512.2:14795-14854 + 14795 14854 20 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14794;60;0&p=30&e=30&w=0&f=14795-14854", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14795-14854&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -8.84161 1.0 0.516666666667 -17.1127935484 -7.41162 -1.42999 NA 0.912111346248 1.0 NA 1.0 0.912111346248 0.3 0.779220779221 0.7 NC_045512.2:651-683 + 651 683 11 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;650;33;0&p=30&e=30&w=0&f=651-683", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:651-683&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -8.85621818182 1.0 1.09090909091 -8.1182 -5.93109090909 -2.92512727273 NA 1.0 1.0 NA 1.0 1.0 0.606060606061 1.03125 0.818181818182 NC_045512.2:13636-13686 - 13636 13686 17 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13635;51;0&s=-&p=30&e=30&w=0&f=13636-13686-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13636-13686&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.87143529412 1.0 0.803921568627 -11.0352 -17.5472470588 8.6758117647 1.0 0.983005046394 0.267455640566 0.267455640566 1.0 0.267455640566 0.313725490196 0.0 0.0 NC_045512.2:11708-11737 - 11708 11737 10 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;11707;30;0&s=-&p=30&e=30&w=0&f=11708-11737-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:11708-11737&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.8774 1.0 0.966666666667 -9.18351724138 -20.12913 11.25173 NA 0.44785609637 1.0 NA 0.452648543057 0.355660100928 0.3 0.0 0.0 NC_045512.2:18154-18192 - 18154 18192 13 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18153;39;0&s=-&p=30&e=30&w=0&f=18154-18192-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18154-18192&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.88733846154 1.0 0.820512820513 -10.83144375 -8.76268461538 -0.124653846155 NA 0.51667263552 1.0 NA 0.812169949536 0.374689890933 0.435897435897 0.0 0.0 NC_045512.2:12125-12283 - 12125 12283 53 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12124;159;0&s=-&p=30&e=30&w=0&f=12125-12283-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12125-12283&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.89220754717 1.0 0.811320754717 -10.9601627907 -9.79793207547 0.905724528302 NA 0.68075858701 0.0174377340062 NA 0.91094253622 0.0174377340062 0.40251572327 0.337221633086 0.433962264151 NC_045512.2:282-422 + 282 422 47 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;281;141;0&p=30&e=30&w=0&f=282-422", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:282-422&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -8.89359361702 1.0 0.992907801418 -8.95711928571 -6.7916893617 -2.10190425532 NA 0.681933908514 0.0174377340062 NA 1.0 0.0174377340062 0.503546099291 1.01196172249 0.375886524823 NC_045512.2:425-562 - 425 562 46 NotMaximal ACG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;424;138;0&s=-&p=30&e=30&w=0&f=425-562-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:425-562&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.89450434783 1.0 1.96376811594 -4.52930479705 -15.3671021739 6.47259782608 NA 0.58996255901 0.319394432688 NA 0.706439850236 0.294888490965 0.471014492754 0.925287356322 0.369565217391 NC_045512.2:19627-19677 - 19627 19677 17 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19626;51;0&s=-&p=30&e=30&w=0&f=19627-19677-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19627-19677&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.89532352941 1.0 1.58823529412 -5.60075925926 -18.0361235294 9.1408 NA 1.0 1.0 NA 0.0883998046557 0.0883998046557 0.352941176471 0.0 0.0 NC_045512.2:15610-15642 - 15610 15642 11 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15609;33;0&s=-&p=30&e=30&w=0&f=15610-15642-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15610-15642&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.8958 1.0 0.878787878788 -10.1228068966 -10.6037727273 1.70797272727 NA 0.800680449292 0.917548429106 NA 0.963897118672 0.788881653915 0.333333333333 0.0 0.0 NC_045512.2:425-577 - 425 577 51 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;424;153;0&s=-&p=30&e=30&w=0&f=425-577-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:425-577&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.90172745098 1.0 1.8954248366 -4.69642862069 -15.6484607843 6.74673333333 NA 0.58996255901 0.319394432688 NA 0.468842585056 0.0 0.470588235294 0.842643587726 0.392156862745 NC_045512.2:29379-29543 - 29379 29543 55 NotMaximal CUG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29378;165;0&s=-&p=30&e=30&w=0&f=29379-29543-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29379-29543&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.90298909091 0.9963 0.670717401754 -13.2738304801 -7.11128363636 -1.79170545455 NA 1.0 0.094488035162 NA 0.390053719681 0.094488035162 0.436363636364 0.128205128205 0.0 NC_045512.2:10099-10134 + 10099 10134 12 Maximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10098;36;0&p=30&e=30&w=0&f=10099-10134", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10099-10134&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -8.90981666667 1.0 0.888888888889 -10.02354375 -14.219625 5.30980833333 NA 0.808770958815 1.0 NA 1.0 0.808770958815 0.361111111111 0.0 0.0 NC_045512.2:14102-14140 + 14102 14140 13 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14101;39;0&p=30&e=30&w=0&f=14102-14140", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14102-14140&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -8.91783076923 1.0 1.07692307692 -8.28084285714 -4.50716153846 -4.41066923077 NA 0.546736122416 0.452648543057 NA 0.85362200879 0.355660100928 0.461538461538 0.481481481481 0.0 NC_045512.2:15842-15895 + 15842 15895 18 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15841;54;0&p=30&e=30&w=0&f=15842-15895", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15842-15895&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -8.91990555556 1.0 0.611111111111 -14.5962090909 -7.58829444444 -1.33161111112 NA 1.0 1.0 NA 0.958499104672 0.958499104672 0.407407407407 0.0 0.0 NC_045512.2:3791-3823 - 3791 3823 11 Maximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3790;33;0&s=-&p=30&e=30&w=0&f=3791-3823-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3791-3823&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.92019090909 0.9967 2.21212121212 -4.03241506849 -22.1877 13.2675090909 NA 0.094488035162 0.890405339411 NA 0.368347712844 0.094488035162 0.30303030303 0.0 0.0 NC_045512.2:12125-12244 - 12125 12244 40 NotMaximal ACG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12124;120;0&s=-&p=30&e=30&w=0&f=12125-12244-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12125-12244&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.93006 1.0 0.875 -10.2057828571 -10.9147575 1.9846975 NA 0.68075858701 0.364759889305 NA 0.912111346248 0.0174377340062 0.383333333333 0.243407707911 0.375 NC_045512.2:20732-20776 + 20732 20776 15 Maximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20731;45;0&p=30&e=30&w=0&f=20732-20776", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20732-20776&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -8.93900666667 1.0 0.822222222222 -10.8717648649 -9.7851 0.84609333333 NA 1.0 0.912111346248 NA 0.912111346248 0.912111346248 0.377777777778 0.0 0.644444444444 NC_045512.2:11632-11676 + 11632 11676 15 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;11631;45;0&p=30&e=30&w=0&f=11632-11676", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:11632-11676&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -8.94227333333 1.0 1.26666666667 -7.05968947368 -9.65304666667 0.710773333337 NA 0.669109555592 1.0 NA 1.0 0.669109555592 0.377777777778 0.681818181818 0.0 NC_045512.2:29191-29292 + 29191 29292 34 NotMaximal AUU NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29190;102;0&p=30&e=30&w=0&f=29191-29292", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29191-29292&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -8.94315882353 1.0 0.725490196078 -12.3270567568 -9.12971176471 0.186552941176 NA 1.0 0.362604590591 NA 0.649770470454 0.362604590591 0.539215686275 0.944444444444 0.0 NC_045512.2:24245-24322 - 24245 24322 26 NotMaximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24244;78;0&s=-&p=30&e=30&w=0&f=24245-24322-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24245-24322&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.95571923077 1.0 1.03846153846 -8.62402592593 -17.2067115385 8.25099230769 NA 0.249246296598 1.0 NA 1.0 0.249246296598 0.346153846154 0.0 0.615384615385 NC_045512.2:12345-12440 + 12345 12440 32 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12344;96;0&p=30&e=30&w=0&f=12345-12440", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12345-12440&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -8.957271875 1.0 0.604166666667 -14.8258293103 -6.451534375 -2.5057375 NA 0.0174377340062 0.687875630799 NA 1.0 0.0174377340062 0.385416666667 0.0 0.84375 NC_045512.2:11623-11676 + 11623 11676 18 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;11622;54;0&p=30&e=30&w=0&f=11623-11676", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:11623-11676&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -8.95953888889 1.0 1.25925925926 -7.11492794118 -9.22537777778 0.265838888888 NA 0.669109555592 1.0 NA 0.856509848608 0.592974116881 0.37037037037 0.5625 0.0 NC_045512.2:11370-11399 + 11370 11399 10 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;11369;30;0&p=30&e=30&w=0&f=11370-11399", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:11370-11399&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -8.95958 1.0 0.8 -11.199475 -1.40352 -7.55606 0.890405339411 1.0 0.477942373433 0.368347712844 1.0 0.477942373433 0.466666666667 0.0 0.0 NC_045512.2:18703-18774 - 18703 18774 24 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18702;72;0&s=-&p=30&e=30&w=0&f=18703-18774-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18703-18774&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.96070416667 1.0 1.16666666667 -7.68060357143 -19.8523458333 10.8916416667 NA 0.703372944815 0.890405339411 NA 1.0 0.703372944815 0.347222222222 0.923076923077 0.0 NC_045512.2:14681-14749 + 14681 14749 23 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14680;69;0&p=30&e=30&w=0&f=14681-14749", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14681-14749&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -8.9627173913 1.0 0.594202898551 -15.083597561 -6.9211173913 -2.0416 NA 1.0 1.0 NA 1.0 1.0 0.333333333333 0.0 0.869565217391 NC_045512.2:17509-17628 - 17509 17628 40 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17508;120;0&s=-&p=30&e=30&w=0&f=17509-17628-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17509-17628&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -8.970435 1.0 0.85 -10.5534529412 -12.4720825 3.5016475 0.542923652938 0.623988279342 0.364759889305 0.0174377340062 0.963206902165 0.0174377340062 0.408333333333 0.620689655172 0.25 NC_045512.2:2424-2462 + 2424 2462 13 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2423;39;0&p=30&e=30&w=0&f=2424-2462", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:2424-2462&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -8.97135384615 1.0 1.87179487179 -4.79291506849 -17.4837846154 8.51243076923 NA 0.476714960117 0.912111346248 NA 0.586309620706 0.292749470943 0.461538461538 0.0 0.0 NC_045512.2:11361-11399 + 11361 11399 13 Maximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;11360;39;0&p=30&e=30&w=0&f=11361-11399", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:11361-11399&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -8.97563846154 1.0 0.769230769231 -11.66833 -2.53535384615 -6.44028461539 NA 1.0 0.477942373433 NA 0.994989418851 0.472931792284 0.461538461538 0.0 0.0 NC_045512.2:12336-12440 + 12336 12440 35 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12335;105;0&p=30&e=30&w=0&f=12336-12440", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12336-12440&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -8.99985428571 1.0 0.590476190476 -15.2416887097 -6.77859428571 -2.22126 NA 0.0174377340062 0.26726355201 NA 1.0 0.0174377340062 0.371428571429 0.0 0.857142857143 NC_045512.2:18154-18249 - 18154 18249 32 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18153;96;0&s=-&p=30&e=30&w=0&f=18154-18249-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18154-18249&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -9.010578125 1.0 0.770833333333 -11.6893986486 -13.18251875 4.171940625 NA 0.51667263552 1.0 NA 0.958499104672 0.492166693798 0.364583333333 0.0 0.0 NC_045512.2:27358-27450 - 27358 27450 31 NotMaximal GUG NearCognate ORF6,ORF7a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27357;93;0&s=-&p=30&e=30&w=0&f=27358-27450-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27358-27450&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -9.01256451613 0.9941 1.5195703435 -5.93099526762 -12.4840354839 3.47147096774 NA 1.0 0.085388246785 NA 1.0 0.085388246785 0.365591397849 0.643598615917 0.0 NC_045512.2:13218-13265 + 13218 13265 16 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13217;48;0&p=30&e=30&w=0&f=13218-13265", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13218-13265&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -9.02444375 1.0 0.791666666667 -11.3992973684 -6.9148 -2.10964375 NA 0.364759889305 1.0 NA 1.0 0.364759889305 0.5 0.671328671329 0.5625 NC_045512.2:291-422 + 291 422 44 NotMaximal ACG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;290;132;0&p=30&e=30&w=0&f=291-422", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:291-422&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -9.04418409091 1.0 1.0 -9.04418409091 -7.33537045455 -1.70881363636 NA 0.681933908514 0.0174377340062 NA 0.965974279668 0.0174377340062 0.507575757576 1.06451612903 0.333333333333 NC_045512.2:29193-29264 + 29193 29264 24 NotMaximal UUG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29192;72;0&p=30&e=30&w=0&f=29193-29264", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29193-29264&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -9.05669583333 1.0 0.666666666667 -13.58504375 -8.783125 -0.27357083333 NA 0.890405339411 0.912111346248 NA 0.990900211623 0.697340061859 0.583333333333 1.14285714286 0.0 NC_045512.2:19627-19674 - 19627 19674 16 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19626;48;0&s=-&p=30&e=30&w=0&f=19627-19674-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19627-19674&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -9.06121875 1.0 1.39583333333 -6.49161940299 -19.2661125 10.20489375 NA 1.0 1.0 NA 1.0 1.0 0.333333333333 0.0 0.0 NC_045512.2:13227-13265 + 13227 13265 13 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13226;39;0&p=30&e=30&w=0&f=13227-13265", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13227-13265&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -9.06271538462 1.0 0.717948717949 -12.6230678571 -5.66866153846 -3.39405384616 NA 0.364759889305 1.0 NA 1.0 0.364759889305 0.538461538462 0.722222222222 0.589743589744 NC_045512.2:29163-29264 + 29163 29264 34 NotMaximal AUU NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29162;102;0&p=30&e=30&w=0&f=29163-29264", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29163-29264&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -9.06895588235 1.0 0.647058823529 -14.0156590909 -8.21300882353 -0.855947058821 NA 0.890405339411 0.649770470454 NA 0.996923327364 0.646693797819 0.519607843137 1.16571428571 0.0 NC_045512.2:13344-13463 + 13344 13463 40 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13343;120;0&p=30&e=30&w=0&f=13344-13463", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13344-13463&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -9.0698875 1.0 0.733333333333 -12.3680284091 -5.981955 -3.0879325 NA 1.0 0.0174377340062 NA 0.540488360736 0.0174377340062 0.458333333333 0.79575596817 1.0 NC_045512.2:11239-11274 + 11239 11274 12 Maximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;11238;36;0&p=30&e=30&w=0&f=11239-11274", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:11239-11274&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -9.07486666667 1.0 0.805555555556 -11.2653517241 -7.958 -1.11686666667 NA 0.866706820772 0.685121276249 NA 1.0 0.597232622497 0.416666666667 1.38461538462 0.0 NC_045512.2:13302-13463 + 13302 13463 54 Maximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13301;162;0&p=30&e=30&w=0&f=13302-13463", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13302-13463&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -9.09175 1.0 0.716049382716 -12.6970991379 -6.67936481481 -2.41238518519 NA 1.0 0.0174377340062 NA 1.0 0.0174377340062 0.432098765432 0.661764705882 0.913580246914 NC_045512.2:14944-14991 - 14944 14991 16 Maximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14943;48;0&s=-&p=30&e=30&w=0&f=14944-14991-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14944-14991&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -9.1152125 1.0 0.8125 -11.2187230769 -12.58280625 3.46759375 NA 0.890405339411 1.0 NA 0.710170926258 0.600576265668 0.333333333333 0.0 0.0 NC_045512.2:11189-11227 - 11189 11227 13 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;11188;39;0&s=-&p=30&e=30&w=0&f=11189-11227-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:11189-11227&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -9.14763846154 1.0 0.74358974359 -12.3019965517 -15.2626538462 6.11501538461 NA 0.890405339411 0.891662054371 NA 0.0174377340062 0.0174377340062 0.358974358974 0.0 0.0 NC_045512.2:15902-15931 - 15902 15931 10 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15901;30;0&s=-&p=30&e=30&w=0&f=15902-15931-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15902-15931&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -9.1486 1.0 0.8 -11.43575 -9.82591 0.67731 NA 1.0 1.0 NA 1.0 1.0 0.4 0.0 0.0 NC_045512.2:18703-18741 - 18703 18741 13 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18702;39;0&s=-&p=30&e=30&w=0&f=18703-18741-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18703-18741&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -9.15010769231 1.0 1.20512820513 -7.59264255319 -19.3152846154 10.1651769231 NA 0.703372944815 0.890405339411 NA 0.0174377340062 0.0174377340062 0.384615384615 0.0 0.0 NC_045512.2:28731-28865 - 28731 28865 45 NotMaximal UUG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28730;135;0&s=-&p=30&e=30&w=0&f=28731-28865-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28731-28865&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -9.15250666667 1.0 0.896296296296 -10.2114743802 -12.3682044444 3.21569777777 NA 0.094488035162 0.876200553476 NA 0.99467686798 0.094488035162 0.481481481481 0.781853281853 0.0 NC_045512.2:17293-17358 - 17293 17358 22 Maximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17292;66;0&s=-&p=30&e=30&w=0&f=17293-17358-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17293-17358&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -9.15262727273 1.0 0.893939393939 -10.2385322034 -14.4114136364 5.25878636363 NA 0.912111346248 0.998831189972 NA 0.912111346248 0.91094253622 0.378787878788 0.44 0.0 NC_045512.2:14798-14854 + 14798 14854 19 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14797;57;0&p=30&e=30&w=0&f=14798-14854", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14798-14854&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -9.15507368421 1.0 0.543859649123 -16.8335225806 -7.57712105263 -1.57795263158 1.0 0.912111346248 1.0 0.912111346248 1.0 0.912111346248 0.315789473684 0.74025974026 0.736842105263 NC_045512.2:15827-15895 + 15827 15895 23 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15826;69;0&p=30&e=30&w=0&f=15827-15895", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15827-15895&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -9.15822173913 1.0 0.666666666667 -13.7373326087 -7.54605217391 -1.61216956522 NA 1.0 1.0 NA 1.0 1.0 0.391304347826 0.0 0.0 NC_045512.2:27019-27081 + 27019 27081 21 NotMaximal AAG NearCognate M =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27018;63;0&p=30&e=30&w=0&f=27019-27081", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27019-27081&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -9.16301904762 0.9999 0.571428571429 -16.0352833333 -9.0692047619 -0.0938142857152 NA 1.0 0.0174377340062 NA 1.0 0.0174377340062 0.428571428571 1.38461538462 0.777777777778 NC_045512.2:10884-10913 + 10884 10913 10 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10883;30;0&p=30&e=30&w=0&f=10884-10913", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10884-10913&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -9.1652 1.0 0.833333333333 -10.99824 -6.98252 -2.18268 0.996933094579 0.890405339411 1.0 0.88733843399 1.0 0.890405339411 0.4 0.9375 0.0 NC_045512.2:14281-14382 - 14281 14382 34 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14280;102;0&s=-&p=30&e=30&w=0&f=14281-14382-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14281-14382&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -9.16718823529 1.0 0.803921568627 -11.4030878049 -15.5808294118 6.41364117647 NA 0.480582777145 0.690786260785 NA 0.990900211623 0.287517499593 0.343137254902 0.333333333333 0.0 NC_045512.2:425-469 - 425 469 15 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;424;45;0&s=-&p=30&e=30&w=0&f=425-469-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:425-469&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -9.17676 1.0 1.55555555556 -5.89934571429 -11.1781133333 2.00135333333 NA 0.58996255901 0.582396223344 NA 0.886111020674 0.461549731402 0.422222222222 0.5 0.466666666667 NC_045512.2:14816-14854 + 14816 14854 13 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14815;39;0&p=30&e=30&w=0&f=14816-14854", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14816-14854&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -9.17820769231 1.0 0.589743589744 -15.5630478261 -9.92982307692 0.751615384613 NA 0.912111346248 1.0 NA 1.0 0.912111346248 0.333333333333 0.0 0.897435897436 NC_045512.2:13636-13665 - 13636 13665 10 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13635;30;0&s=-&p=30&e=30&w=0&f=13636-13665-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13636-13665&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -9.18437 1.0 0.9 -10.2048555556 -20.26913 11.08476 NA 0.983005046394 0.267455640566 NA 1.0 0.267455640566 0.3 0.0 0.0 NC_045512.2:10670-10717 - 10670 10717 16 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10669;48;0&s=-&p=30&e=30&w=0&f=10670-10717-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10670-10717&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -9.1865875 1.0 0.9375 -9.79902666667 -17.213175 8.0265875 NA 0.457834934071 0.923818980954 NA 0.946306364968 0.383965489175 0.4375 0.489795918367 0.0 NC_045512.2:18880-18942 - 18880 18942 21 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18879;63;0&s=-&p=30&e=30&w=0&f=18880-18942-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18880-18942&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -9.24058571429 1.0 1.14285714286 -8.0855125 -21.273547619 12.0329619048 NA 0.355741494384 1.0 NA 0.909249552336 0.355741494384 0.412698412698 0.7875 0.428571428571 NC_045512.2:28731-28856 - 28731 28856 42 NotMaximal UUG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28730;126;0&s=-&p=30&e=30&w=0&f=28731-28856-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28731-28856&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -9.25903571429 1.0 0.912698412698 -10.1446826087 -12.5656738095 3.30663809523 NA 0.094488035162 0.876200553476 NA 0.685990558359 0.094488035162 0.5 0.777777777778 0.0 NC_045512.2:11501-11596 - 11501 11596 32 Maximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;11500;96;0&s=-&p=30&e=30&w=0&f=11501-11596-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:11501-11596&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -9.26736875 1.0 0.875 -10.5912785714 -14.626571875 5.359203125 NA 0.493628520267 0.094488035162 NA 1.0 0.085388246785 0.364583333333 0.0 0.6875 NC_045512.2:14783-14854 + 14783 14854 24 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14782;72;0&p=30&e=30&w=0&f=14783-14854", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14783-14854&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -9.2728125 1.0 0.541666666667 -17.1190384615 -6.93212083333 -2.34069166667 NA 0.912111346248 1.0 NA 0.912111346248 0.912111346248 0.347222222222 0.96 0.652777777778 NC_045512.2:28731-28871 - 28731 28871 47 NotMaximal CUG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28730;141;0&s=-&p=30&e=30&w=0&f=28731-28871-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28731-28871&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -9.29142765957 1.0 0.893617021277 -10.39755 -11.8265 2.53507234043 NA 0.094488035162 0.670529057464 NA 0.094488035162 0.094488035162 0.489361702128 0.729310344828 0.0 NC_045512.2:14978-15019 - 14978 15019 14 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14977;42;0&s=-&p=30&e=30&w=0&f=14978-15019-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14978-15019&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -9.29565714286 1.0 0.642857142857 -14.4599111111 -8.51742857143 -0.778228571431 NA 1.0 0.912111346248 NA 0.979550708123 0.891662054371 0.333333333333 0.0 0.0 NC_045512.2:14780-14854 + 14780 14854 25 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14779;75;0&p=30&e=30&w=0&f=14780-14854", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14780-14854&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -9.296192 1.0 0.56 -16.6003428571 -6.629348 -2.666844 0.962366921699 0.912111346248 1.0 0.874478267947 1.0 0.912111346248 0.346666666667 0.909090909091 0.666666666667 NC_045512.2:425-682 - 425 682 86 Maximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;424;258;0&s=-&p=30&e=30&w=0&f=425-682-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:425-682&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -9.29775116279 1.0 1.57751937984 -5.89390614251 -15.5464883721 6.2487372093 NA 0.58996255901 0.319394432688 NA 1.0 0.294888490965 0.492248062016 0.912121212121 0.476744186047 NC_045512.2:25937-25981 + 25937 25981 15 NotMaximal AUG Canonical ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25936;45;0&p=30&e=30&w=0&f=25937-25981", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25937-25981&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -9.29778666667 1.0 1.04444444444 -8.90213617022 -7.31890666667 -1.97888 0.0894774540127 0.328748168647 0.840146508221 0.0174377340062 0.987637961908 0.28543382712 0.4 0.0 0.0 NC_045512.2:15848-15895 + 15848 15895 16 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15847;48;0&p=30&e=30&w=0&f=15848-15895", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15848-15895&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -9.31484375 1.0 0.645833333333 -14.422983871 -7.806125 -1.50871875 NA 1.0 1.0 NA 0.888777470291 0.888777470291 0.395833333333 0.0 0.0 NC_045512.2:13118-13216 - 13118 13216 33 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13117;99;0&s=-&p=30&e=30&w=0&f=13118-13216-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13118-13216&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -9.32714545455 1.0 0.89898989899 -10.3751393258 -14.0197363636 4.69259090909 NA 0.993911769494 0.943330620218 NA 0.361660426502 0.294475012209 0.444444444444 0.208421052632 0.0 NC_045512.2:15703-15750 - 15703 15750 16 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15702;48;0&s=-&p=30&e=30&w=0&f=15703-15750-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15703-15750&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -9.33406875 1.0 1.10416666667 -8.45349622642 -17.3864625 8.05239375 NA 0.0174377340062 0.884317108904 NA 0.899143740843 0.0174377340062 0.375 0.6 0.0 NC_045512.2:28653-28688 + 28653 28688 12 NotMaximal AAG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28652;36;0&p=30&e=30&w=0&f=28653-28688", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28653-28688&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -9.339175 1.0 0.944444444444 -9.88853823529 -9.60806666667 0.268891666667 NA 1.0 0.706439850236 NA 0.993661077649 0.700100927885 0.527777777778 0.428571428571 0.0 NC_045512.2:18154-18240 - 18154 18240 29 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18153;87;0&s=-&p=30&e=30&w=0&f=18154-18240-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18154-18240&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -9.3412 1.0 0.827586206897 -11.2872833333 -14.6412724138 5.30007241379 NA 0.51667263552 1.0 NA 0.890405339411 0.51667263552 0.344827586207 0.0 0.0 NC_045512.2:12476-12538 - 12476 12538 21 Maximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12475;63;0&s=-&p=30&e=30&w=0&f=12476-12538-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12476-12538&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -9.35565714286 1.0 1.0 -9.35565714286 -19.3793714286 10.0237142857 NA 0.0174377340062 1.0 NA 0.952055998698 0.0174377340062 0.301587301587 0.7 0.428571428571 NC_045512.2:20416-20472 - 20416 20472 19 Maximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20415;57;0&s=-&p=30&e=30&w=0&f=20416-20472-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20416-20472&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -9.36544210526 1.0 1.40350877193 -6.6728775 -19.7552947368 10.3898526316 NA 0.912111346248 0.890405339411 NA 0.847527266808 0.663561777633 0.315789473684 0.703703703704 0.0 NC_045512.2:29298-29330 + 29298 29330 11 NotMaximal AAG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29297;33;0&p=30&e=30&w=0&f=29298-29330", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29298-29330&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -9.37950909091 1.0 1.09090909091 -8.59788333333 -2.30236363636 -7.07714545455 NA 0.884951977861 0.94974116881 NA 1.0 0.861852515058 0.30303030303 0.0 0.0 NC_045512.2:29184-29264 + 29184 29264 27 NotMaximal UUG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29183;81;0&p=30&e=30&w=0&f=29184-29264", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29184-29264&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -9.39048518519 1.0 0.654320987654 -14.3514962264 -7.86524074074 -1.52524444445 NA 0.890405339411 0.649770470454 NA 0.833735959629 0.649770470454 0.555555555556 1.12055335968 0.0 NC_045512.2:13230-13265 + 13230 13265 12 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13229;36;0&p=30&e=30&w=0&f=13230-13265", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13230-13265&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -9.39858333333 1.0 0.777777777778 -12.0838928571 -6.22251666667 -3.17606666666 NA 0.364759889305 1.0 NA 0.983005046394 0.364759889305 0.555555555556 0.727272727273 0.555555555556 NC_045512.2:339-422 + 339 422 28 NotMaximal ACG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;338;84;0&p=30&e=30&w=0&f=339-422", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:339-422&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -9.39973214286 1.0 1.21428571429 -7.74095588236 -7.81499285714 -1.58473928572 NA 0.681933908514 0.0174377340062 NA 1.0 0.0174377340062 0.52380952381 0.897435897436 0.0 NC_045512.2:29463-29504 + 29463 29504 14 NotMaximal CUG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29462;42;0&p=30&e=30&w=0&f=29463-29504", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29463-29504&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -9.40338571429 1.0 0.738095238095 -12.7400709677 -4.72695714286 -4.67642857143 NA 0.995630799284 1.0 NA 0.094488035162 0.094488035162 0.380952380952 0.0 0.0 NC_045512.2:17293-17343 - 17293 17343 17 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17292;51;0&s=-&p=30&e=30&w=0&f=17293-17343-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17293-17343&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -9.41560588235 1.0 0.960784313725 -9.79991632653 -10.8960117647 1.48040588236 NA 0.912111346248 0.998831189972 NA 0.750050463943 0.66216181019 0.411764705882 0.472222222222 0.0 NC_045512.2:14807-14854 + 14807 14854 16 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14806;48;0&p=30&e=30&w=0&f=14807-14854", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14807-14854&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -9.4165625 1.0 0.5625 -16.7405555556 -8.4136875 -1.002875 NA 0.912111346248 1.0 NA 0.916877747029 0.828989093277 0.3125 0.888888888889 0.875 NC_045512.2:425-667 - 425 667 81 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;424;243;0&s=-&p=30&e=30&w=0&f=425-667-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:425-667&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -9.41781604938 1.0 1.6049382716 -5.86802384615 -15.9477469136 6.5299308642 0.889011883445 0.58996255901 0.319394432688 0.294888490965 1.0 0.294888490965 0.485596707819 0.782265144864 0.444444444444 NC_045512.2:6224-6253 - 6224 6253 10 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6223;30;0&s=-&p=30&e=30&w=0&f=6224-6253-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6224-6253&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -9.41788 0.9813 1.46064887007 -6.44773716186 -20.51724 11.09936 NA 0.566576591242 1.0 NA 0.956793097835 0.529200716262 0.3 0.0 0.0 NC_045512.2:27007-27081 + 27007 27081 25 NotMaximal AGG NearCognate M =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27006;75;0&p=30&e=30&w=0&f=27007-27081", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27007-27081&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -9.428644 0.9999 0.6 -15.7144066667 -9.875616 0.446972 NA 1.0 0.0174377340062 NA 1.0 0.0174377340062 0.453333333333 1.04166666667 0.653333333333 NC_045512.2:27934-27987 + 27934 27987 18 Maximal CUG NearCognate ORF8 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27933;54;0&p=30&e=30&w=0&f=27934-27987", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27934-27987&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -9.43263333333 0.6936 5.21932300012 -1.80725226876 -11.9591611111 2.52652777778 NA 0.094488035162 0.950652775517 NA 0.417844701286 0.094488035162 0.37037037037 0.0 0.0 NC_045512.2:28591-28647 + 28591 28647 19 Maximal AAG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28590;57;0&p=30&e=30&w=0&f=28591-28647", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28591-28647&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -9.43403157895 1.0 0.842105263158 -11.2029125 -6.76413157895 -2.6699 NA 0.943330620218 1.0 NA 0.364759889305 0.364759889305 0.491228070175 0.0 0.0 NC_045512.2:26709-26783 - 26709 26783 25 NotMaximal AAG NearCognate M =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26708;75;0&s=-&p=30&e=30&w=0&f=26709-26783-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26709-26783&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -9.437284 1.0 0.973333333333 -9.69583972603 -15.869552 6.432268 NA 0.368347712844 0.890405339411 NA 0.094488035162 0.094488035162 0.426666666667 0.607287449393 0.36 NC_045512.2:15703-15741 - 15703 15741 13 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15702;39;0&s=-&p=30&e=30&w=0&f=15703-15741-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15703-15741&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -9.43888461538 1.0 1.0 -9.43888461538 -17.206 7.76711538462 NA 0.0174377340062 0.884317108904 NA 0.645495686147 0.0174377340062 0.384615384615 0.722222222222 0.0 NC_045512.2:11400-11444 - 11400 11444 15 Maximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;11399;45;0&s=-&p=30&e=30&w=0&f=11400-11444-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:11400-11444&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -9.44188 1.0 0.955555555556 -9.8810372093 -12.49592 3.05404 NA 0.477942373433 0.094488035162 NA 0.706439850236 0.094488035162 0.288888888889 1.125 0.0 NC_045512.2:17509-17571 - 17509 17571 21 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17508;63;0&s=-&p=30&e=30&w=0&f=17509-17571-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17509-17571&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -9.4558047619 1.0 0.793650793651 -11.914314 -12.2391666667 2.78336190477 NA 0.623988279342 0.869047696565 NA 0.827390525802 0.514803841771 0.460317460317 0.908653846154 0.0 NC_045512.2:18122-18184 + 18122 18184 21 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18121;63;0&p=30&e=30&w=0&f=18122-18184", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18122-18184&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -9.4664952381 1.0 0.904761904762 -10.4629684211 -8.29685714286 -1.16963809524 NA 1.0 0.986114276412 NA 0.775458245157 0.775458245157 0.380952380952 0.0 0.0 NC_045512.2:29469-29504 + 29469 29504 12 NotMaximal AUU NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29468;36;0&p=30&e=30&w=0&f=29469-29504", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29469-29504&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -9.46878333333 1.0 0.694444444444 -13.635048 -4.15954166667 -5.30924166666 NA 0.995630799284 1.0 NA 0.598267947257 0.598267947257 0.333333333333 0.0 0.0 NC_045512.2:303-422 + 303 422 40 NotMaximal ACG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;302;120;0&p=30&e=30&w=0&f=303-422", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:303-422&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -9.4779925 1.0 1.06666666667 -8.88561796875 -7.9923825 -1.48561 NA 0.681933908514 0.0174377340062 NA 1.0 0.0174377340062 0.516666666667 1.00840336134 0.266666666667 NC_045512.2:18391-18495 - 18391 18495 35 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18390;105;0&s=-&p=30&e=30&w=0&f=18391-18495-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18391-18495&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -9.48089428571 1.0 1.29523809524 -7.31980808823 -15.3934371429 5.91254285715 NA 1.0 0.905492430409 NA 0.65726517988 0.569376526127 0.390476190476 0.2625 0.0857142857143 NC_045512.2:25773-25814 + 25773 25814 14 NotMaximal UUG NearCognate ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25772;42;0&p=30&e=30&w=0&f=25773-25814", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25773-25814&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -9.49449285714 1.0 1.7380952381 -5.46258493151 -15.9685857143 6.47409285715 NA 0.978368875142 0.991001139508 NA 1.0 0.969370014651 0.404761904762 0.6 0.0 NC_045512.2:12669-12770 + 12669 12770 34 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12668;102;0&p=30&e=30&w=0&f=12669-12770", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12669-12770&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -9.49582058824 1.0 0.813725490196 -11.6695626506 -11.8595470588 2.36372647058 NA 0.0174377340062 0.364759889305 NA 0.452648543057 0.0174377340062 0.450980392157 0.579545454545 0.0 NC_045512.2:15610-15690 - 15610 15690 27 NotMaximal ACG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15609;81;0&s=-&p=30&e=30&w=0&f=15610-15690-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15610-15690&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -9.50095185185 1.0 1.04938271605 -9.05384823529 -16.6103592593 7.10940740741 NA 0.800680449292 0.917548429106 NA 0.956936350317 0.800680449292 0.358024691358 0.794117647059 0.0 NC_045512.2:1394-1543 - 1394 1543 50 NotMaximal ACG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1393;150;0&s=-&p=30&e=30&w=0&f=1394-1543-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1394-1543&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -9.506574 1.0 1.38666666667 -6.85570240385 -17.734288 8.227714 NA 0.0 0.27465733355 NA 0.890405339411 0.0 0.46 0.512820512821 0.34 NC_045512.2:28617-28688 + 28617 28688 24 Maximal CUG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28616;72;0&p=30&e=30&w=0&f=28617-28688", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28617-28688&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -9.50931666667 1.0 0.847222222222 -11.2241114754 -7.58879583333 -1.92052083334 NA 1.0 0.706439850236 NA 0.884909653264 0.700944164089 0.541666666667 0.192513368984 0.0 NC_045512.2:701-796 - 701 796 32 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;700;96;0&s=-&p=30&e=30&w=0&f=701-796-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:701-796&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -9.532528125 1.0 1.23958333333 -7.69010672269 -10.9818125 1.449284375 NA 1.0 0.984346410549 NA 0.341725541266 0.341725541266 0.458333333333 0.8 0.59375 NC_045512.2:20591-20632 + 20591 20632 14 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20590;42;0&p=30&e=30&w=0&f=20591-20632", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20591-20632&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -9.53354285714 1.0 1.11904761905 -8.51933617021 -14.7926428571 5.2591 NA 0.244076184275 1.0 NA 0.890405339411 0.244076184275 0.333333333333 0.0 0.0 NC_045512.2:27362-27394 + 27362 27394 11 NotMaximal AAG NearCognate ORF6,ORF7a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27361;33;0&p=30&e=30&w=0&f=27362-27394", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27362-27394&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -9.53438181818 0.9835 0.888486119565 -10.7310419468 -6.70304545455 -2.83133636363 NA 1.0 0.468842585056 NA 1.0 0.468842585056 0.363636363636 0.942857142857 0.0 NC_045512.2:29379-29531 - 29379 29531 51 NotMaximal AGG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29378;153;0&s=-&p=30&e=30&w=0&f=29379-29531-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29379-29531&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -9.54961568627 0.996 0.664499158754 -14.3711478946 -7.52258235294 -2.02703333333 NA 1.0 0.644571056487 NA 1.0 0.644571056487 0.437908496732 0.137096774194 0.0 NC_045512.2:701-790 - 701 790 30 NotMaximal ACG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;700;90;0&s=-&p=30&e=30&w=0&f=701-790-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:701-790&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -9.55728333333 1.0 1.27777777778 -7.47961304348 -11.56991 2.01262666667 NA 1.0 0.984346410549 NA 0.704437571219 0.688783981768 0.455555555556 0.861244019139 0.633333333333 NC_045512.2:28731-28820 - 28731 28820 30 NotMaximal AGG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28730;90;0&s=-&p=30&e=30&w=0&f=28731-28820-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28731-28820&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -9.55989666667 1.0 0.811111111111 -11.7861739726 -12.04669 2.48679333333 NA 0.094488035162 0.876200553476 NA 0.890405339411 0.094488035162 0.511111111111 0.511363636364 0.0 NC_045512.2:19189-19218 - 19189 19218 10 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19188;30;0&s=-&p=30&e=30&w=0&f=19189-19218-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19189-19218&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -9.56081 1.0 1.03333333333 -9.25239677419 -13.48878 3.92797 NA 0.276405664985 1.0 NA 0.621468337946 0.276405664985 0.333333333333 1.25 0.0 NC_045512.2:8675-8719 - 8675 8719 15 NotMaximal ACG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8674;45;0&s=-&p=30&e=30&w=0&f=8675-8719-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8675-8719&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -9.56887333333 1.0 1.31111111111 -7.29829322034 -18.8621533333 9.29328 NA 0.094488035162 1.0 NA 0.896457756796 0.094488035162 0.422222222222 0.576923076923 0.0 NC_045512.2:12156-12203 + 12156 12203 16 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12155;48;0&p=30&e=30&w=0&f=12156-12203", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12156-12203&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -9.5702625 1.0 0.916666666667 -10.4402863636 -10.05920625 0.48894375 0.94613706658 1.0 0.408689565359 0.408689565359 1.0 0.408689565359 0.375 0.0 0.0833333333333 NC_045512.2:330-422 + 330 422 31 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;329;93;0&p=30&e=30&w=0&f=330-422", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:330-422&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -9.58903225806 1.0 1.20430107527 -7.96232142857 -6.45479354839 -3.13423870967 NA 0.681933908514 0.0174377340062 NA 1.0 0.0174377340062 0.537634408602 1.085 0.0537634408602 NC_045512.2:25949-25981 + 25949 25981 11 NotMaximal UUG NearCognate ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25948;33;0&p=30&e=30&w=0&f=25949-25981", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25949-25981&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -9.59323636364 1.0 1.18181818182 -8.11735384616 -7.61105454545 -1.98218181819 NA 0.328748168647 0.840146508221 NA 0.94974116881 0.28543382712 0.393939393939 0.0 0.0 NC_045512.2:12672-12770 + 12672 12770 33 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12671;99;0&p=30&e=30&w=0&f=12672-12770", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12672-12770&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -9.60124848485 1.0 0.808080808081 -11.881545 -12.1155909091 2.51434242424 NA 0.0174377340062 0.364759889305 NA 0.912111346248 0.0174377340062 0.444444444444 0.614906832298 0.0 NC_045512.2:10916-10951 - 10916 10951 12 Maximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10915;36;0&s=-&p=30&e=30&w=0&f=10916-10951-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10916-10951&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -9.60500833333 1.0 0.861111111111 -11.1542032258 -13.43075 3.82574166667 NA 0.890405339411 1.0 NA 1.0 0.890405339411 0.305555555556 0.0 0.0 NC_045512.2:18125-18184 + 18125 18184 20 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18124;60;0&p=30&e=30&w=0&f=18125-18184", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18125-18184&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -9.6099 1.0 0.9 -10.6776666667 -8.8232 -0.7867 NA 1.0 0.986114276412 NA 1.0 0.986114276412 0.366666666667 0.0 0.0 NC_045512.2:14281-14325 - 14281 14325 15 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14280;45;0&s=-&p=30&e=30&w=0&f=14281-14325-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14281-14325&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -9.61518 1.0 0.955555555556 -10.0623976744 -16.8990266667 7.28384666667 NA 0.480582777145 1.0 NA 1.0 0.480582777145 0.333333333333 0.833333333333 0.0 NC_045512.2:10995-11027 + 10995 11027 11 Maximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10994;33;0&p=30&e=30&w=0&f=10995-11027", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10995-11027&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -9.62638181818 1.0 1.45454545455 -6.6181375 -7.71109090909 -1.91529090909 NA 1.0 0.498420966954 NA 1.0 0.498420966954 0.424242424242 0.0 0.0 NC_045512.2:20122-20184 - 20122 20184 21 Maximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20121;63;0&s=-&p=30&e=30&w=0&f=20122-20184-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20122-20184&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -9.63091428571 1.0 1.14285714286 -8.42705 -15.5214333333 5.89051904762 NA 0.640670682077 0.436916815888 NA 1.0 0.252951326713 0.333333333333 0.605769230769 0.380952380952 NC_045512.2:29379-29468 - 29379 29468 30 NotMaximal CUG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29378;90;0&s=-&p=30&e=30&w=0&f=29379-29468-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29379-29468&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -9.63398 0.9975 0.645329754131 -14.9287708157 -5.70517 -3.92881 NA 1.0 0.860706495198 NA 0.368347712844 0.368347712844 0.444444444444 0.225 0.0 NC_045512.2:3206-3259 - 3206 3259 18 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3205;54;0&s=-&p=30&e=30&w=0&f=3206-3259-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3206-3259&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -9.63495555556 0.5514 2.89352972837 -3.32982773983 -12.9962 3.36124444444 NA 0.094488035162 0.859811167182 NA 0.0174377340062 0.0174377340062 0.444444444444 0.4 0.0 NC_045512.2:12393-12440 + 12393 12440 16 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12392;48;0&p=30&e=30&w=0&f=12393-12440", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12393-12440&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -9.6358125 1.0 0.666666666667 -14.45371875 -6.50696875 -3.12884375 1.0 0.0174377340062 0.706439850236 0.0174377340062 1.0 0.0174377340062 0.395833333333 0.0 1.0 NC_045512.2:7994-8053 - 7994 8053 20 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7993;60;0&s=-&p=30&e=30&w=0&f=7994-8053-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7994-8053&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -9.63663 1.0 1.3 -7.41279230769 -17.184245 7.547615 NA 0.390053719681 0.573947582614 NA 0.493075044766 0.094488035162 0.383333333333 1.33333333333 0.0 NC_045512.2:3716-3745 - 3716 3745 10 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3715;30;0&s=-&p=30&e=30&w=0&f=3716-3745-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3716-3745&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -9.63699 1.0 1.76666666667 -5.4549 -14.01118 4.37419 0.349155135927 0.884317108904 1.0 0.343066905421 0.890405339411 0.884317108904 0.433333333333 0.0 0.0 NC_045512.2:23583-23621 + 23583 23621 13 NotMaximal AUC NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23582;39;0&p=30&e=30&w=0&f=23583-23621", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23583-23621&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -9.66296153846 0.7242 2.7421564529 -3.52385493112 -11.7905076923 2.12754615385 NA 0.322445059417 1.0 NA 0.500514406642 0.0 0.538461538462 1.06363636364 0.282051282051 NC_045512.2:11501-11593 - 11501 11593 31 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;11500;93;0&s=-&p=30&e=30&w=0&f=11501-11593-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:11501-11593&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -9.66716774194 1.0 0.903225806452 -10.7029357143 -14.5427258065 4.87555806451 NA 0.493628520267 0.094488035162 NA 0.0174377340062 0.0 0.354838709677 0.0 0.709677419355 NC_045512.2:18391-18483 - 18391 18483 31 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18390;93;0&s=-&p=30&e=30&w=0&f=18391-18483-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18391-18483&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -9.67219032258 1.0 1.37634408602 -7.02745078125 -16.7881870968 7.11599677419 NA 1.0 1.0 NA 1.0 1.0 0.387096774194 0.290625 0.0967741935484 NC_045512.2:28731-28823 - 28731 28823 31 NotMaximal AAG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28730;93;0&s=-&p=30&e=30&w=0&f=28731-28823-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28731-28823&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -9.69133225806 1.0 0.817204301075 -11.8591302632 -12.2914322581 2.6001 NA 0.094488035162 0.876200553476 NA 1.0 0.094488035162 0.505376344086 0.507272727273 0.0 NC_045512.2:9998-10027 - 9998 10027 10 Maximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9997;30;0&s=-&p=30&e=30&w=0&f=9998-10027-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9998-10027&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -9.69716 1.0 1.03333333333 -9.3843483871 -13.1199 3.42274 NA 0.43953768517 0.867380758587 NA 1.0 0.43953768517 0.433333333333 0.0 0.0 NC_045512.2:98-130 - 98 130 11 NotMaximal AUA NearCognate =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;97;33;0&s=-&p=30&e=30&w=0&f=98-130-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:98-130&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -9.69925454545 0.9751 0.810053169176 -11.973602369 -9.35359090909 -0.345663636359 NA 0.477942373433 0.966521243692 NA 0.929008627706 0.452648543057 0.545454545455 0.825 0.0 NC_045512.2:98-127 - 98 127 10 NotMaximal CUG NearCognate =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;97;30;0&s=-&p=30&e=30&w=0&f=98-127-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:98-127&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -9.70755 0.9747 0.822948458963 -11.7960607305 -10.01929 0.31174 NA 0.477942373433 0.966521243692 NA 0.978808399805 0.477942373433 0.6 0.75 0.0 NC_045512.2:27437-27484 + 27437 27484 16 Maximal GUG NearCognate ORF7a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27436;48;0&p=30&e=30&w=0&f=27437-27484", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27437-27484&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -9.71309375 1.0 1.27083333333 -7.64309016393 -7.18654375 -2.52655 NA 0.986729610939 0.974706169624 NA 0.51519453036 0.51519453036 0.395833333333 0.0 0.0 NC_045512.2:15610-15669 - 15610 15669 20 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15609;60;0&s=-&p=30&e=30&w=0&f=15610-15669-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15610-15669&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -9.724215 1.0 1.08333333333 -8.97619846154 -16.324325 6.60011 NA 0.800680449292 0.917548429106 NA 0.673039231646 0.491115090347 0.35 0.0 0.0 NC_045512.2:1394-1570 - 1394 1570 59 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1393;177;0&s=-&p=30&e=30&w=0&f=1394-1570-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1394-1570&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -9.73046101695 1.0 1.4802259887 -6.57363206107 -17.9189830508 8.1885220339 0.974706169624 0.0 0.094488035162 0.0 1.0 0.0 0.457627118644 0.546296296296 0.28813559322 NC_045512.2:98-133 - 98 133 12 Maximal AUU NearCognate =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;97;36;0&s=-&p=30&e=30&w=0&f=98-133-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:98-133&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -9.73051666667 0.9754 0.827686272325 -11.7562861582 -9.39028333333 -0.340233333337 NA 0.477942373433 0.966521243692 NA 0.094488035162 0.094488035162 0.5 0.9 0.0 NC_045512.2:321-422 + 321 422 34 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;320;102;0&p=30&e=30&w=0&f=321-422", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:321-422&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -9.73406764706 1.0 1.17647058824 -8.2739575 -6.66186470588 -3.07220294118 NA 0.681933908514 0.0174377340062 NA 1.0 0.0174377340062 0.519607843137 1.04692082111 0.137254901961 NC_045512.2:14944-14988 - 14944 14988 15 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14943;45;0&s=-&p=30&e=30&w=0&f=14944-14988-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14944-14988&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -9.73876 1.0 0.755555555556 -12.8895352941 -12.8253666667 3.08660666667 NA 0.890405339411 1.0 NA 0.961461826469 0.85186716588 0.333333333333 0.0 0.0 NC_045512.2:18391-18474 - 18391 18474 28 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18390;84;0&s=-&p=30&e=30&w=0&f=18391-18474-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18391-18474&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -9.74175357143 1.0 1.44047619048 -6.76287024793 -17.2135392857 7.47178571428 NA 1.0 1.0 NA 1.0 1.0 0.404761904762 0.291666666667 0.107142857143 NC_045512.2:4466-4501 - 4466 4501 12 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4465;36;0&s=-&p=30&e=30&w=0&f=4466-4501-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4466-4501&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -9.74539166667 1.0 1.69444444444 -5.75137868853 -19.2242166667 9.478825 NA 0.094488035162 1.0 NA 1.0 0.094488035162 0.25 1.8 0.0 NC_045512.2:16835-16891 + 16835 16891 19 Maximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16834;57;0&p=30&e=30&w=0&f=16835-16891", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16835-16891&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -9.75402631579 1.0 0.877192982456 -11.11959 -10.6764210526 0.922394736842 NA 1.0 1.0 NA 1.0 1.0 0.368421052632 0.548076923077 0.0 NC_045512.2:425-649 - 425 649 75 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;424;225;0&s=-&p=30&e=30&w=0&f=425-649-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:425-649&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -9.75848666667 1.0 1.65333333333 -5.90231048387 -16.248664 6.49017733333 NA 0.58996255901 0.319394432688 NA 1.0 0.294888490965 0.48 0.859375 0.426666666667 NC_045512.2:26709-26843 - 26709 26843 45 Maximal ACG NearCognate M =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26708;135;0&s=-&p=30&e=30&w=0&f=26709-26843-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26709-26843&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -9.76514222222 1.0 0.97037037037 -10.0633145038 -16.4101977778 6.64505555556 NA 0.368347712844 0.675940094416 NA 0.274540126974 0.085388246785 0.459259259259 0.857142857143 0.2 NC_045512.2:13118-13210 - 13118 13210 31 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13117;93;0&s=-&p=30&e=30&w=0&f=13118-13210-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13118-13210&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -9.77290322581 1.0 0.903225806452 -10.82 -13.5376 3.76469677419 NA 0.993911769494 0.943330620218 NA 0.72018557708 0.649265831027 0.451612903226 0.212814645309 0.0 NC_045512.2:17014-17106 - 17014 17106 31 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17013;93;0&s=-&p=30&e=30&w=0&f=17014-17106-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17014-17106&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -9.7744516129 1.0 1.03225806452 -9.469 -15.0784387097 5.30398709678 0.833250854631 0.770727657496 0.790958814911 0.471802051115 1.0 0.500976721472 0.397849462366 0.0 0.290322580645 NC_045512.2:24245-24274 - 24245 24274 10 NotMaximal AUA NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24244;30;0&s=-&p=30&e=30&w=0&f=24245-24274-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24245-24274&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -9.78364 1.0 0.9 -10.8707111111 -12.54749 2.76385 NA 0.249246296598 1.0 NA 0.893739215367 0.249246296598 0.333333333333 0.0 0.2 NC_045512.2:28731-28838 - 28731 28838 36 NotMaximal GUG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28730;108;0&s=-&p=30&e=30&w=0&f=28731-28838-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28731-28838&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -9.78371111111 1.0 0.925925925926 -10.566408 -12.80025 3.01653888889 NA 0.094488035162 0.876200553476 NA 1.0 0.094488035162 0.509259259259 0.586956521739 0.0 NC_045512.2:1394-1459 - 1394 1459 22 NotMaximal ACG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1393;66;0&s=-&p=30&e=30&w=0&f=1394-1459-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1394-1459&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -9.79756363636 1.0 1.56060606061 -6.27805048543 -18.5515 8.75393636364 NA 0.0 0.27465733355 NA 0.094488035162 0.0 0.424242424242 0.673469387755 0.409090909091 NC_045512.2:28272-28310 - 28272 28310 13 Maximal GUG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28271;39;0&s=-&p=30&e=30&w=0&f=28272-28310-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28272-28310&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -9.80334615385 1.0 1.12820512821 -8.68932954546 -9.37723076923 -0.426115384619 NA 0.706439850236 1.0 NA 0.327563079928 0.327563079928 0.410256410256 0.619047619048 0.025641025641 NC_045512.2:15902-15937 - 15902 15937 12 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15901;36;0&s=-&p=30&e=30&w=0&f=15902-15937-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15902-15937&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -9.80716666667 1.0 0.805555555556 -12.1744137931 -9.82255833333 0.0153916666633 NA 1.0 1.0 NA 0.990900211623 0.990900211623 0.444444444444 0.0 0.0 NC_045512.2:27849-27905 - 27849 27905 19 Maximal AAG NearCognate ORF7b,ORF8 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27848;57;0&s=-&p=30&e=30&w=0&f=27849-27905-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27849-27905&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -9.81005263158 0.8249 1.45703354075 -6.73289416972 -10.7872315789 0.977178947367 NA 0.617720983233 0.623255738239 NA 0.094488035162 0.0174377340062 0.350877192982 1.1875 0.210526315789 NC_045512.2:14554-14583 - 14554 14583 10 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14553;30;0&s=-&p=30&e=30&w=0&f=14554-14583-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14554-14583&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -9.8184 1.0 1.26666666667 -7.75136842105 -18.97262 9.15422 NA 0.0174377340062 0.0174377340062 NA 1.0 0.0174377340062 0.533333333333 0.0 0.0 NC_045512.2:20416-20466 - 20416 20466 17 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20415;51;0&s=-&p=30&e=30&w=0&f=20416-20466-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20416-20466&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -9.82476470588 1.0 1.3137254902 -7.4785522388 -19.8636411765 10.0388764706 NA 0.912111346248 0.890405339411 NA 0.914335015465 0.620774865701 0.274509803922 0.0 0.0 NC_045512.2:1394-1456 - 1394 1456 21 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1393;63;0&s=-&p=30&e=30&w=0&f=1394-1456-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1394-1456&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -9.83104285714 1.0 1.61904761905 -6.07211470588 -19.0759904762 9.24494761905 NA 0.0 0.27465733355 NA 0.094488035162 0.0 0.412698412698 0.372781065089 0.380952380952 NC_045512.2:29379-29522 - 29379 29522 48 NotMaximal UUG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29378;144;0&s=-&p=30&e=30&w=0&f=29379-29522-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29379-29522&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -9.83701458333 0.9957 0.678252578398 -14.5034680245 -7.68813333333 -2.14888125 NA 1.0 0.644571056487 NA 0.904365944978 0.644571056487 0.423611111111 0.155172413793 0.0 NC_045512.2:14636-14749 + 14636 14749 38 Maximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14635;114;0&p=30&e=30&w=0&f=14636-14749", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14636-14749&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -9.84857368421 1.0 0.631578947368 -15.593575 -6.72567894737 -3.12289473684 NA 1.0 0.0174377340062 NA 0.863245971024 0.0174377340062 0.359649122807 0.271428571429 0.798245614035 NC_045512.2:425-637 - 425 637 71 NotMaximal ACG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;424;213;0&s=-&p=30&e=30&w=0&f=425-637-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:425-637&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -9.85194788732 1.0 1.71830985915 -5.73351065574 -16.0022112676 6.15026338029 NA 0.58996255901 0.319394432688 NA 0.973348526778 0.294888490965 0.488262910798 0.795072788354 0.394366197183 NC_045512.2:10056-10112 + 10056 10112 19 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10055;57;0&p=30&e=30&w=0&f=10056-10112", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10056-10112&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -9.87246842105 1.0 0.771929824561 -12.7893340909 -12.1363105263 2.26384210527 NA 0.539195832655 1.0 NA 0.912111346248 0.539195832655 0.40350877193 0.0 0.40350877193 NC_045512.2:425-595 - 425 595 57 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;424;171;0&s=-&p=30&e=30&w=0&f=425-595-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:425-595&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -9.88060350877 1.0 1.87134502924 -5.2799475 -16.9876280702 7.10702456141 0.869018394921 0.58996255901 0.319394432688 0.285788702588 1.0 0.294888490965 0.479532163743 0.718918918919 0.350877192982 NC_045512.2:15610-15696 - 15610 15696 29 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15609;87;0&s=-&p=30&e=30&w=0&f=15610-15696-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15610-15696&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -9.89484827586 1.0 1.05747126437 -9.35708478261 -16.0361793103 6.14133103448 0.800162786912 0.800680449292 0.917548429106 0.71279179554 1.0 0.800680449292 0.344827586207 0.787330316742 0.0 NC_045512.2:26709-26837 - 26709 26837 43 NotMaximal ACG NearCognate M =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26708;129;0&s=-&p=30&e=30&w=0&f=26709-26837-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26709-26837&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -9.89613488372 1.0 0.968992248062 -10.2128112 -15.9747511628 6.07861627907 NA 0.368347712844 0.675940094416 NA 0.512322969233 0.085388246785 0.449612403101 0.625454545455 0.209302325581 NC_045512.2:6398-6430 - 6398 6430 11 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6397;33;0&s=-&p=30&e=30&w=0&f=6398-6430-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6398-6430&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -9.92437272727 0.9813 0.802893670653 -12.3607559631 -7.80674545455 -2.11762727272 NA 0.094488035162 0.976594497802 NA 0.981299039557 0.094488035162 0.393939393939 0.0 1.0 NC_045512.2:13595-13633 + 13595 13633 13 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13594;39;0&p=30&e=30&w=0&f=13595-13633", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13595-13633&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -9.92767692308 1.0 1.12820512821 -8.79953181818 -8.00468461538 -1.9229923077 NA 0.267455640566 1.0 NA 1.0 0.267455640566 0.384615384615 1.44444444444 0.128205128205 NC_045512.2:13636-13683 - 13636 13683 16 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13635;48;0&s=-&p=30&e=30&w=0&f=13636-13683-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13636-13683&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -9.9308 1.0 0.854166666667 -11.626302439 -18.770225 8.839425 NA 0.983005046394 0.267455640566 NA 1.0 0.267455640566 0.3125 0.0 0.0 NC_045512.2:28594-28647 + 28594 28647 18 Maximal AUG Canonical N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28593;54;0&p=30&e=30&w=0&f=28594-28647", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28594-28647&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -9.93425 1.0 0.814814814815 -12.1920340909 -6.94840555556 -2.98584444444 0.912111346248 0.943330620218 1.0 0.855441966466 1.0 0.943330620218 0.5 0.0 0.0 NC_045512.2:425-634 - 425 634 70 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;424;210;0&s=-&p=30&e=30&w=0&f=425-634-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:425-634&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -9.94288 1.0 1.72857142857 -5.75207933884 -15.9407314286 5.99785142857 NA 0.58996255901 0.319394432688 NA 0.656327527267 0.27227413316 0.485714285714 0.733695652174 0.385714285714 NC_045512.2:19138-19176 - 19138 19176 13 Maximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19137;39;0&s=-&p=30&e=30&w=0&f=19138-19176-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19138-19176&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -9.95839230769 1.0 1.02564102564 -9.7094325 -20.0539461538 10.0955538462 NA 0.364759889305 0.924593846655 NA 1.0 0.364759889305 0.333333333333 0.0 0.0 NC_045512.2:1394-1504 - 1394 1504 37 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1393;111;0&s=-&p=30&e=30&w=0&f=1394-1504-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1394-1504&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -9.97016216216 1.0 1.45045045045 -6.87383850932 -17.5944243243 7.62426216216 NA 0.0 0.27465733355 NA 0.977502848771 0.0 0.45045045045 0.540584415584 0.459459459459 NC_045512.2:13301-13360 - 13301 13360 20 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13300;60;0&s=-&p=30&e=30&w=0&f=13301-13360-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13301-13360&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -9.972135 1.0 0.783333333333 -12.7303851064 -10.399675 0.42754 NA 0.0174377340062 1.0 NA 0.974409897444 0.0174377340062 0.366666666667 0.0 0.75 NC_045512.2:20302-20352 - 20302 20352 17 Maximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20301;51;0&s=-&p=30&e=30&w=0&f=20302-20352-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20302-20352&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -9.98011176471 1.0 1.37254901961 -7.27122428572 -16.0782 6.09808823529 NA 0.863727820283 1.0 NA 1.0 0.863727820283 0.392156862745 1.0625 0.0 NC_045512.2:7994-8041 - 7994 8041 16 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7993;48;0&s=-&p=30&e=30&w=0&f=7994-8041-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7994-8041&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -9.98356875 1.0 1.1875 -8.40721578947 -17.03115625 7.0475875 NA 0.390053719681 0.573947582614 NA 1.0 0.390053719681 0.395833333333 1.0 0.0 NC_045512.2:5650-5706 + 5650 5706 19 Maximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5649;57;0&p=30&e=30&w=0&f=5650-5706", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5650-5706&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -10.0006894737 1.0 0.912280701754 -10.9622942308 -14.0211526316 4.02046315788 NA 0.47140485105 0.368347712844 NA 1.0 0.094488035162 0.421052631579 0.0 0.526315789474 NC_045512.2:425-631 - 425 631 69 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;424;207;0&s=-&p=30&e=30&w=0&f=425-631-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:425-631&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.0010550725 1.0 1.73429951691 -5.76662506966 -16.0192927536 6.01823768112 NA 0.58996255901 0.319394432688 NA 0.986729610939 0.294888490965 0.487922705314 0.739285714286 0.376811594203 NC_045512.2:24645-24674 - 24645 24674 10 Maximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24644;30;0&s=-&p=30&e=30&w=0&f=24645-24674-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24645-24674&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.00136 1.0 0.733333333333 -13.6382181818 -7.62609 -2.37527 NA 0.894715936839 0.68114601986 NA 0.619283737587 0.619283737587 0.366666666667 0.0 1.0 NC_045512.2:425-592 - 425 592 56 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;424;168;0&s=-&p=30&e=30&w=0&f=425-592-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:425-592&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.0134910714 1.0 1.8869047619 -5.30683438484 -17.3550107143 7.34151964289 NA 0.58996255901 0.319394432688 NA 0.094488035162 0.0174377340062 0.482142857143 0.725925925926 0.357142857143 NC_045512.2:13802-13831 - 13802 13831 10 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13801;30;0&s=-&p=30&e=30&w=0&f=13802-13831-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13802-13831&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.01403 1.0 0.633333333333 -15.8116263158 -8.87895 -1.13508 NA 0.878118183298 1.0 NA 0.343053882468 0.343053882468 0.433333333333 0.75 0.0 NC_045512.2:29260-29292 + 29260 29292 11 NotMaximal GUG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29259;33;0&p=30&e=30&w=0&f=29260-29292", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29260-29292&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -10.0196090909 1.0 0.878787878788 -11.4016241379 -8.54009090909 -1.47951818181 NA 1.0 0.568276086603 NA 1.0 0.568276086603 0.484848484848 0.0 0.0 NC_045512.2:9110-9139 - 9110 9139 10 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9109;30;0&s=-&p=30&e=30&w=0&f=9110-9139-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9110-9139&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.02402 1.0 1.06666666667 -9.39751875 -12.92289 2.89887 NA 0.452648543057 0.887605404525 NA 0.935884746866 0.364759889305 0.533333333333 0.952380952381 0.0 NC_045512.2:18880-18957 - 18880 18957 26 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18879;78;0&s=-&p=30&e=30&w=0&f=18880-18957-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18880-18957&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.0303538462 1.0 1.20512820513 -8.32305957451 -19.2704076923 9.24005384611 NA 0.355741494384 0.995754517337 NA 0.91408432362 0.355741494384 0.384615384615 0.746411483254 0.346153846154 NC_045512.2:17531-17599 - 17531 17599 23 Maximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17530;69;0&s=-&p=30&e=30&w=0&f=17531-17599-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17531-17599&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.0346608696 1.0 0.826086956522 -12.1472210527 -10.0775695652 0.0429086956174 NA 0.0174377340062 0.706439850236 NA 0.979550708123 0.0174377340062 0.492753623188 0.726315789474 0.31884057971 NC_045512.2:18880-18930 - 18880 18930 17 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18879;51;0&s=-&p=30&e=30&w=0&f=18880-18930-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18880-18930&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.0354470588 1.0 1.1568627451 -8.67470847456 -16.9189882353 6.88354117649 NA 0.355741494384 1.0 NA 0.708810027674 0.300139996744 0.450980392157 0.784615384615 0.529411764706 NC_045512.2:14978-15028 - 14978 15028 17 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14977;51;0&s=-&p=30&e=30&w=0&f=14978-15028-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14978-15028&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.0482823529 1.0 0.705882352941 -14.2350666666 -8.4995 -1.5487823529 0.411580660915 1.0 0.912111346248 0.411580660915 1.0 0.912111346248 0.333333333333 0.728571428571 0.0 NC_045512.2:12545-12595 - 12545 12595 17 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12544;51;0&s=-&p=30&e=30&w=0&f=12545-12595-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12545-12595&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.0575764706 1.0 1.27450980392 -7.89132923078 -17.8484411765 7.79086470587 NA 0.48414129904 0.99726517988 NA 0.981435780563 0.48414129904 0.372549019608 0.0 0.0 NC_045512.2:1394-1615 - 1394 1615 74 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1393;222;0&s=-&p=30&e=30&w=0&f=1394-1615-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1394-1615&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.0713243243 1.0 1.55855855856 -6.46194797686 -17.2835608108 7.21223648651 NA 0.0 0.0174377340062 NA 0.510522545987 0.0 0.454954954955 0.534081796311 0.22972972973 NC_045512.2:24245-24340 - 24245 24340 32 NotMaximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24244;96;0&s=-&p=30&e=30&w=0&f=24245-24340-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24245-24340&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.074978125 1.0 1.23958333333 -8.12771344538 -20.0503875 9.975409375 NA 0.249246296598 0.974706169624 NA 1.0 0.249246296598 0.34375 0.0 0.5 NC_045512.2:14944-14985 - 14944 14985 14 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14943;42;0&s=-&p=30&e=30&w=0&f=14944-14985-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14944-14985&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.0844285714 1.0 0.738095238095 -13.6627741935 -13.5898 3.5053714286 NA 0.890405339411 1.0 NA 1.0 0.890405339411 0.357142857143 0.0 0.0 NC_045512.2:19709-19738 + 19709 19738 10 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19708;30;0&p=30&e=30&w=0&f=19709-19738", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19709-19738&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -10.08985 1.0 1.33333333333 -7.5673875 -16.13793 6.04808 NA 0.670844864073 0.343053882468 NA 0.706439850236 0.0174377340062 0.366666666667 0.0 0.0 NC_045512.2:16234-16263 - 16234 16263 10 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16233;30;0&s=-&p=30&e=30&w=0&f=16234-16263-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16234-16263&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.09105 1.0 1.16666666667 -8.64947142857 -20.1112 10.02015 NA 0.577069835585 0.810636496826 NA 0.824733843399 0.243385967768 0.5 0.0 0.0 NC_045512.2:28656-28688 + 28656 28688 11 NotMaximal ACG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28655;33;0&p=30&e=30&w=0&f=28656-28688", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28656-28688&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -10.0922909091 1.0 1.0 -10.0922909091 -9.15223636364 -0.940054545464 NA 1.0 0.706439850236 NA 1.0 0.706439850236 0.545454545455 0.428571428571 0.0 NC_045512.2:19627-19737 - 19627 19737 37 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19626;111;0&s=-&p=30&e=30&w=0&f=19627-19737-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19627-19737&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.0923108108 1.0 1.54954954955 -6.5130610465 -16.6017810811 6.50947027028 NA 1.0 0.994989418851 NA 0.93972326225 0.9347126811 0.342342342342 0.0 0.0 NC_045512.2:624-683 + 624 683 20 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;623;60;0&p=30&e=30&w=0&f=624-683", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:624-683&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -10.11655 1.0 0.9 -11.2406111111 -5.035255 -5.081295 NA 1.0 1.0 NA 1.0 1.0 0.5 1.38888888889 0.9 NC_045512.2:6224-6262 - 6224 6262 13 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6223;39;0&s=-&p=30&e=30&w=0&f=6224-6262-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6224-6262&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.1328153846 0.9813 1.43713216197 -7.05071923985 -20.2309538462 10.0981384616 NA 0.566576591242 1.0 NA 0.0 0.0 0.307692307692 0.0 0.0 NC_045512.2:29379-29492 - 29379 29492 38 NotMaximal AUU NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29378;114;0&s=-&p=30&e=30&w=0&f=29379-29492-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29379-29492&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.1461552632 0.9981 0.658593665542 -15.4057893266 -7.82814473684 -2.31801052636 NA 1.0 0.856461012535 NA 0.0174377340062 0.0174377340062 0.412280701754 0.20652173913 0.0 NC_045512.2:12687-12770 + 12687 12770 28 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12686;84;0&p=30&e=30&w=0&f=12687-12770", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12687-12770&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -10.1521214286 1.0 0.833333333333 -12.1825457143 -13.1340035714 2.98188214283 NA 0.0174377340062 0.364759889305 NA 0.957711216018 0.0174377340062 0.464285714286 0.663157894737 0.0 NC_045512.2:28626-28688 + 28626 28688 21 NotMaximal AAG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28625;63;0&p=30&e=30&w=0&f=28626-28688", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28626-28688&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -10.1557619048 1.0 0.888888888889 -11.4252321429 -8.75801904762 -1.39774285718 NA 1.0 0.706439850236 NA 1.0 0.706439850236 0.507936507937 0.25 0.0 NC_045512.2:13863-13895 + 13863 13895 11 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13862;33;0&p=30&e=30&w=0&f=13863-13895", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13863-13895&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -10.1706545455 1.0 0.575757575758 -17.6648210527 -8.16612727273 -2.00452727277 NA 0.994966628683 0.987712843887 NA 0.636216832167 0.602741331597 0.242424242424 0.0 0.787878787879 NC_045512.2:10864-10902 + 10864 10902 13 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10863;39;0&p=30&e=30&w=0&f=10864-10902", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10864-10902&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -10.1716 1.0 0.974358974359 -10.4392736842 -10.2783923077 0.106792307692 NA 1.0 1.0 NA 0.368347712844 0.368347712844 0.384615384615 0.78 0.0 NC_045512.2:642-683 + 642 683 14 NotMaximal ACG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;641;42;0&p=30&e=30&w=0&f=642-683", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:642-683&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -10.1773357143 1.0 1.0 -10.1773357143 -5.52265 -4.6546857143 NA 1.0 1.0 NA 0.978368875142 0.978368875142 0.547619047619 1.33333333333 0.857142857143 NC_045512.2:12125-12157 - 12125 12157 11 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12124;33;0&s=-&p=30&e=30&w=0&f=12125-12157-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12125-12157&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.1784454545 1.0 1.45454545455 -6.99768124997 -20.7774727273 10.5990272728 NA 0.68075858701 1.0 NA 0.94613706658 0.626895653589 0.393939393939 0.0 0.0 NC_045512.2:1394-1606 - 1394 1606 71 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1393;213;0&s=-&p=30&e=30&w=0&f=1394-1606-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1394-1606&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.1835225352 1.0 1.55868544601 -6.53340451807 -17.6801140845 7.49659154931 NA 0.0 0.0174377340062 NA 0.974706169624 0.0 0.455399061033 0.560526315789 0.239436619718 NC_045512.2:5027-5074 - 5027 5074 16 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5026;48;0&s=-&p=30&e=30&w=0&f=5027-5074-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5027-5074&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.18424375 1.0 1.16666666667 -8.72935178571 -16.68440625 6.5001625 NA 0.229158391665 0.852453198763 NA 1.0 0.0174377340062 0.395833333333 0.0 0.0 NC_045512.2:9398-9508 - 9398 9508 37 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9397;111;0&s=-&p=30&e=30&w=0&f=9398-9508-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9398-9508&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.1955513514 1.0 0.972972972973 -10.4787611112 -14.8437675676 4.64821621617 NA 0.523005046394 0.512856910304 NA 0.974706169624 0.413410385805 0.378378378378 0.266826923077 0.0 NC_045512.2:27643-27699 - 27643 27699 19 NotMaximal AAG NearCognate ORF7a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27642;57;0&s=-&p=30&e=30&w=0&f=27643-27699-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27643-27699&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.2013789474 1.0 1.70175438596 -5.99462474229 -12.7919263158 2.59054736839 NA 0.789692332736 0.711352759238 NA 0.368347712844 0.333954094091 0.350877192982 0.0 0.0 NC_045512.2:6398-6427 - 6398 6427 10 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6397;30;0&s=-&p=30&e=30&w=0&f=6398-6427-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6398-6427&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.20454 0.9813 0.883183037719 -11.5542753474 -8.70491 -1.49963 NA 0.094488035162 0.976594497802 NA 0.871704378968 0.094488035162 0.366666666667 0.0 1.0 NC_045512.2:15860-15892 - 15860 15892 11 Maximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15859;33;0&s=-&p=30&e=30&w=0&f=15860-15892-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15860-15892&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.2056545455 1.0 0.636363636364 -16.0374571429 -10.4924272727 0.286772727227 NA 0.883828748169 0.99266156601 NA 0.919957675403 0.803786423572 0.363636363636 0.0 0.0 NC_045512.2:14099-14140 + 14099 14140 14 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14098;42;0&p=30&e=30&w=0&f=14099-14140", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14099-14140&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -10.2106071429 1.0 1.16666666667 -8.75194897963 -4.09072142857 -6.11988571433 NA 0.546736122416 0.452648543057 NA 0.942305062673 0.452648543057 0.47619047619 0.424242424242 0.0 NC_045512.2:28731-28835 - 28731 28835 35 Maximal AUG Canonical N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28730;105;0&s=-&p=30&e=30&w=0&f=28731-28835-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28731-28835&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.2129714286 1.0 0.952380952381 -10.72362 -13.1317057143 2.91873428569 0.68728308644 0.094488035162 0.876200553476 0.094488035162 0.706439850236 0.094488035162 0.504761904762 0.608695652174 0.0 NC_045512.2:27541-27612 - 27541 27612 24 NotMaximal GUG NearCognate ORF7a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27540;72;0&s=-&p=30&e=30&w=0&f=27541-27612-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27541-27612&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.2240625 1.0 1.56944444444 -6.51444690265 -18.7854833333 8.56142083333 NA 0.094488035162 0.477942373433 NA 1.0 0.094488035162 0.416666666667 0.651583710407 0.0 NC_045512.2:1394-1603 - 1394 1603 70 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1393;210;0&s=-&p=30&e=30&w=0&f=1394-1603-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1394-1603&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.2385771429 1.0 1.57619047619 -6.49577401815 -17.5908985714 7.35232142853 NA 0.0 0.0174377340062 NA 0.30057300993 0.0 0.461904761905 0.552631578947 0.242857142857 NC_045512.2:1394-1672 - 1394 1672 93 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1393;279;0&s=-&p=30&e=30&w=0&f=1394-1672-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1394-1672&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.2464010753 1.0 1.59856630824 -6.40974417042 -18.0598204301 7.81341935481 NA 0.0 0.0174377340062 NA 0.24441803679 0.0 0.4229390681 0.487762237762 0.182795698925 NC_045512.2:1394-1531 - 1394 1531 46 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1393;138;0&s=-&p=30&e=30&w=0&f=1394-1531-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1394-1531&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.2541043478 1.0 1.44927536232 -7.07533199998 -18.4145043478 8.16040000003 NA 0.0 0.27465733355 NA 0.468611427641 0.0 0.449275362319 0.438095238095 0.369565217391 NC_045512.2:14632-14664 - 14632 14664 11 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14631;33;0&s=-&p=30&e=30&w=0&f=14632-14664-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14632-14664&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.2595363636 1.0 1.0303030303 -9.95778529408 -16.4305454545 6.17100909095 NA 0.959661403223 0.452648543057 NA 1.0 0.452648543057 0.363636363636 0.0 0.454545454545 NC_045512.2:29379-29501 - 29379 29501 41 NotMaximal AUU NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29378;123;0&s=-&p=30&e=30&w=0&f=29379-29501-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29379-29501&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.2610170732 0.9982 0.675444535543 -15.1915020897 -7.92584878049 -2.33516829271 NA 1.0 0.856461012535 NA 0.24441803679 0.094488035162 0.406504065041 0.197115384615 0.0 NC_045512.2:13143-13187 + 13143 13187 15 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13142;45;0&p=30&e=30&w=0&f=13143-13187", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13143-13187&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -10.2640866667 1.0 0.777777777778 -13.1966828572 -8.99862 -1.2654666667 NA 0.435738238646 0.219560475338 NA 0.680862770633 0.0174377340062 0.422222222222 0.0 0.0 NC_045512.2:11189-11218 - 11189 11218 10 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;11188;30;0&s=-&p=30&e=30&w=0&f=11189-11218-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:11189-11218&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.26574 1.0 0.8 -12.832175 -15.66334 5.3976 NA 0.890405339411 0.891662054371 NA 0.99467686798 0.680667426339 0.366666666667 0.0 0.0 NC_045512.2:18037-18069 - 18037 18069 11 Maximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18036;33;0&s=-&p=30&e=30&w=0&f=18037-18069-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18037-18069&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.2686363636 1.0 0.909090909091 -11.2955 -8.49771818182 -1.77091818178 NA 0.912111346248 0.912111346248 NA 0.44493569917 0.44493569917 0.333333333333 0.0 0.0 NC_045512.2:4466-4519 - 4466 4519 18 Maximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4465;54;0&s=-&p=30&e=30&w=0&f=4466-4519-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4466-4519&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.2688555556 1.0 1.7962962963 -5.71668247425 -23.0154666667 12.7466111111 NA 0.094488035162 1.0 NA 0.966882630636 0.094488035162 0.314814814815 1.03846153846 0.0 NC_045512.2:425-586 - 425 586 54 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;424;162;0&s=-&p=30&e=30&w=0&f=425-586-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:425-586&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.2732259259 1.0 1.91975308642 -5.35132668809 -17.2015055556 6.92827962966 NA 0.58996255901 0.319394432688 NA 0.094488035162 0.0174377340062 0.475308641975 0.780991735537 0.37037037037 NC_045512.2:16694-16723 - 16694 16723 10 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16693;30;0&s=-&p=30&e=30&w=0&f=16694-16723-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16694-16723&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.27443 1.0 0.866666666667 -11.8551115385 -8.12342 -2.15101 NA 0.240338596777 1.0 NA 0.664551522058 0.0 0.466666666667 0.666666666667 0.566666666667 NC_045512.2:17014-17079 - 17014 17079 22 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17013;66;0&s=-&p=30&e=30&w=0&f=17014-17079-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17014-17079&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.2747954545 1.0 1.10606060606 -9.28954109585 -17.2105863636 6.93579090914 NA 0.770727657496 0.790958814911 NA 1.0 0.500976721472 0.348484848485 0.0 0.409090909091 NC_045512.2:17293-17328 - 17293 17328 12 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17292;36;0&s=-&p=30&e=30&w=0&f=17293-17328-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17293-17328&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.275125 1.0 0.888888888889 -11.559515625 -10.8152416667 0.540116666667 NA 0.912111346248 0.998831189972 NA 0.546527755168 0.361393455966 0.361111111111 0.0 0.0 NC_045512.2:9890-9982 - 9890 9982 31 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9889;93;0&s=-&p=30&e=30&w=0&f=9890-9982-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9890-9982&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.2755290323 1.0 1.10752688172 -9.27790485441 -17.2312935484 6.95576451609 NA 0.094488035162 0.0883998046557 NA 0.984346410549 0.0883998046557 0.387096774194 0.287925696594 0.0 NC_045512.2:11106-11141 + 11106 11141 12 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;11105;36;0&p=30&e=30&w=0&f=11106-11141", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:11106-11141&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -10.2791166667 1.0 1.19444444444 -8.60577209305 -4.15738333333 -6.12173333337 NA 0.094488035162 0.857287970047 NA 0.457834934071 0.094488035162 0.361111111111 0.0 0.0 NC_045512.2:17692-17736 - 17692 17736 15 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17691;45;0&s=-&p=30&e=30&w=0&f=17692-17736-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17692-17736&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.28804 1.0 0.977777777778 -10.5218590909 -18.3044133333 8.01637333333 NA 1.0 0.890405339411 NA 0.706439850236 0.706439850236 0.422222222222 0.5 0.0 NC_045512.2:7691-7759 - 7691 7759 23 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7690;69;0&s=-&p=30&e=30&w=0&f=7691-7759-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7691-7759&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.305226087 1.0 1.46376811594 -7.04020396043 -20.1306956522 9.82546956517 NA 0.368347712844 0.795165228716 NA 0.90371479733 0.368347712844 0.347826086957 0.482517482517 0.0 NC_045512.2:24245-24313 - 24245 24313 23 NotMaximal AUA NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24244;69;0&s=-&p=30&e=30&w=0&f=24245-24313-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24245-24313&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.3052782609 1.0 1.01449275362 -10.15806 -17.4411695652 7.13589130432 NA 0.249246296598 1.0 NA 0.985720332085 0.249246296598 0.333333333333 0.0 0.652173913043 NC_045512.2:28731-28832 - 28731 28832 34 NotMaximal AGG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28730;102;0&s=-&p=30&e=30&w=0&f=28731-28832-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28731-28832&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.3090970588 1.0 0.921568627451 -11.1864670213 -11.7747323529 1.46563529414 NA 0.094488035162 0.876200553476 NA 0.706439850236 0.094488035162 0.509803921569 0.611694152924 0.0 NC_045512.2:20122-20181 - 20122 20181 20 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20121;60;0&s=-&p=30&e=30&w=0&f=20122-20181-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20122-20181&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.33012 1.0 1.16666666667 -8.85438857143 -16.214525 5.884405 NA 0.640670682077 0.436916815888 NA 1.0 0.252951326713 0.333333333333 0.659340659341 0.4 NC_045512.2:18104-18184 + 18104 18184 27 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18103;81;0&p=30&e=30&w=0&f=18104-18184", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18104-18184&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -10.3328259259 1.0 0.925925925926 -11.159452 -9.52281481481 -0.810011111085 NA 1.0 0.986114276412 NA 0.890405339411 0.876519615823 0.41975308642 0.0 0.0 NC_045512.2:14281-14367 - 14281 14367 29 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14280;87;0&s=-&p=30&e=30&w=0&f=14281-14367-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14281-14367&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.3399896552 1.0 0.919540229885 -11.24473875 -17.5235413793 7.18355172411 0.912111346248 0.480582777145 0.690786260785 0.29661728797 1.0 0.29661728797 0.35632183908 0.3625 0.0 NC_045512.2:9398-9493 - 9398 9493 32 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9397;96;0&s=-&p=30&e=30&w=0&f=9398-9493-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9398-9493&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.34634375 1.0 0.958333333333 -10.7961847826 -14.50350625 4.1571625 1.0 0.523005046394 0.512856910304 0.413410385805 1.0 0.413410385805 0.385416666667 0.298136645963 0.0 NC_045512.2:20986-21060 - 20986 21060 25 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20985;75;0&s=-&p=30&e=30&w=0&f=20986-21060-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20986-21060&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.34734 1.0 1.26666666667 -8.16895263158 -18.996396 8.649056 NA 0.390053719681 0.226869607684 NA 0.703705030116 0.0174377340062 0.36 0.416666666667 0.0 NC_045512.2:12147-12203 + 12147 12203 19 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12146;57;0&p=30&e=30&w=0&f=12147-12203", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12147-12203&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -10.3511526316 1.0 0.964912280702 -10.7275581818 -10.0546894737 -0.296463157916 NA 1.0 0.408689565359 NA 1.0 0.408689565359 0.368421052632 0.0 0.0701754385965 NC_045512.2:13146-13187 + 13146 13187 14 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13145;42;0&p=30&e=30&w=0&f=13146-13187", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13146-13187&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -10.3534 1.0 0.809523809524 -12.7894941176 -8.93754285714 -1.41585714286 NA 0.435738238646 0.219560475338 NA 0.770024418037 0.0174377340062 0.452380952381 0.0 0.0 NC_045512.2:16694-16795 + 16694 16795 34 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16693;102;0&p=30&e=30&w=0&f=16694-16795", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16694-16795&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -10.3550705882 1.0 0.980392156863 -10.562172 -9.82913823529 -0.525932352906 NA 0.912111346248 0.0174377340062 NA 0.890405339411 0.0174377340062 0.411764705882 0.695454545455 0.166666666667 NC_045512.2:3206-3256 - 3206 3256 17 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3205;51;0&s=-&p=30&e=30&w=0&f=3206-3256-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3206-3256&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.3564764706 0.5612 2.91053731656 -3.55826960599 -13.9118352941 3.55535882352 NA 0.094488035162 0.859811167182 NA 0.383965489175 0.0883998046557 0.43137254902 0.455357142857 0.0 NC_045512.2:16841-16891 + 16841 16891 17 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16840;51;0&p=30&e=30&w=0&f=16841-16891", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16841-16891&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -10.3711588235 1.0 0.960784313725 -10.7944714285 -8.59668235294 -1.77447647056 NA 1.0 1.0 NA 1.0 1.0 0.392156862745 0.53125 0.0 NC_045512.2:11500-11553 + 11500 11553 18 Maximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;11499;54;0&p=30&e=30&w=0&f=11500-11553", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:11500-11553&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -10.3778611111 1.0 0.666666666667 -15.5667916666 -8.88907222222 -1.48878888888 NA 1.0 0.094488035162 NA 0.493628520267 0.085388246785 0.37037037037 0.0 0.944444444444 NC_045512.2:13215-13265 + 13215 13265 17 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13214;51;0&p=30&e=30&w=0&f=13215-13265", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13215-13265&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -10.3816529412 1.0 0.843137254902 -12.3131232558 -5.18603529412 -5.19561764708 NA 0.364759889305 1.0 NA 0.361660426502 0.0174377340062 0.490196078431 0.653846153846 0.529411764706 NC_045512.2:17122-17154 - 17122 17154 11 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17121;33;0&s=-&p=30&e=30&w=0&f=17122-17154-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17122-17154&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.3833363636 1.0 0.969696969697 -10.707815625 -18.4702909091 8.08695454549 NA 0.0174377340062 0.983005046394 NA 0.887595637311 0.0 0.484848484848 0.6 0.0 NC_045512.2:19627-19704 - 19627 19704 26 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19626;78;0&s=-&p=30&e=30&w=0&f=19627-19704-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19627-19704&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.3876461538 1.0 1.61538461538 -6.43044761902 -18.6101384615 8.22249230774 NA 1.0 1.0 NA 0.983005046394 0.983005046394 0.346153846154 0.0 0.0 NC_045512.2:12545-12598 - 12545 12598 18 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12544;54;0&s=-&p=30&e=30&w=0&f=12545-12598-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12545-12598&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.4001388889 1.0 1.27777777778 -8.13923913044 -17.7070666667 7.30692777777 NA 0.48414129904 0.88767051929 NA 0.673322480873 0.245352433664 0.37037037037 0.0 0.0 NC_045512.2:10464-10508 + 10464 10508 15 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10463;45;0&p=30&e=30&w=0&f=10464-10508", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10464-10508&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -10.4230533333 1.0 0.533333333333 -19.5432249999 -9.60004 -0.8230133333 NA 0.544356177763 0.935269412339 NA 1.0 0.390053719681 0.377777777778 0.0 0.8 NC_045512.2:14554-14598 - 14554 14598 15 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14553;45;0&s=-&p=30&e=30&w=0&f=14554-14598-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14554-14598&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.4281 1.0 1.22222222222 -8.53208181818 -17.5040733333 7.07597333333 NA 0.0174377340062 0.0174377340062 NA 0.87061045092 0.0174377340062 0.511111111111 0.340909090909 0.0 NC_045512.2:13122-13187 + 13122 13187 22 Maximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13121;66;0&p=30&e=30&w=0&f=13122-13187", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13122-13187&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -10.4311409091 1.0 0.712121212121 -14.6479851064 -8.84887272727 -1.58226818183 NA 0.435738238646 0.219560475338 NA 1.0 0.0174377340062 0.454545454545 0.0 0.0 NC_045512.2:17014-17088 - 17014 17088 25 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17013;75;0&s=-&p=30&e=30&w=0&f=17014-17088-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17014-17088&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.432584 1.0 1.08 -9.6598 -15.38872 4.956136 NA 0.770727657496 0.790958814911 NA 0.54253296435 0.436516360085 0.386666666667 0.0 0.36 NC_045512.2:21200-21247 + 21200 21247 16 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21199;48;0&p=30&e=30&w=0&f=21200-21247", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21200-21247&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -10.434425 1.0 0.833333333333 -12.52131 -11.41828125 0.98385625 NA 0.756408920723 0.995031743448 NA 0.556500081393 0.421611590428 0.458333333333 0.4 0.0 NC_045512.2:12125-12220 - 12125 12220 32 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12124;96;0&s=-&p=30&e=30&w=0&f=12125-12220-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12125-12220&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.4376625 1.0 1.03125 -10.121369697 -13.200953125 2.763290625 NA 0.68075858701 0.364759889305 NA 1.0 0.0174377340062 0.375 0.0 0.21875 NC_045512.2:9890-9964 - 9890 9964 25 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9889;75;0&s=-&p=30&e=30&w=0&f=9890-9964-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9890-9964&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.441836 1.0 1.06666666667 -9.78922125 -17.89714 7.455304 0.289412339248 0.094488035162 0.613758749797 0.094488035162 1.0 0.094488035162 0.36 0.0 0.0 NC_045512.2:1394-1651 - 1394 1651 86 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1393;258;0&s=-&p=30&e=30&w=0&f=1394-1651-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1394-1651&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.4448895349 1.0 1.61627906977 -6.46230575541 -17.9353313953 7.49044186045 NA 0.0 0.0174377340062 NA 0.094488035162 0.0 0.434108527132 0.49935483871 0.197674418605 NC_045512.2:18095-18184 + 18095 18184 30 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18094;90;0&p=30&e=30&w=0&f=18095-18184", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18095-18184&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -10.45283 1.0 0.911111111111 -11.4726182927 -9.52354333333 -0.929286666667 NA 1.0 0.986114276412 NA 0.934230831841 0.920345108253 0.422222222222 0.0 0.0 NC_045512.2:12545-12619 - 12545 12619 25 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12544;75;0&s=-&p=30&e=30&w=0&f=12545-12619-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12545-12619&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.45396 1.0 1.29333333333 -8.08295876289 -19.593072 9.139112 NA 0.48414129904 0.88767051929 NA 0.877799120951 0.0 0.346666666667 0.0 0.0 NC_045512.2:4589-4630 - 4589 4630 14 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4588;42;0&s=-&p=30&e=30&w=0&f=4589-4630-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4589-4630&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.4641785714 1.0 1.11904761905 -9.35096808508 -11.4723285714 1.00815000003 0.974706169624 0.869047696565 0.950200227902 0.819247924467 1.0 0.819247924467 0.357142857143 0.0 0.0 NC_045512.2:14944-14982 - 14944 14982 13 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14943;39;0&s=-&p=30&e=30&w=0&f=14944-14982-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14944-14982&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.4773153846 1.0 0.794871794872 -13.1811387097 -13.9134 3.4360846154 NA 0.890405339411 1.0 NA 0.990900211623 0.881305551034 0.384615384615 0.0 0.0 NC_045512.2:26488-26529 - 26488 26529 14 Maximal CUG NearCognate M =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26487;42;0&s=-&p=30&e=30&w=0&f=26488-26529-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26488-26529&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.4800142857 0.9342 0.834488533967 -12.5586078887 -10.5628714286 0.0828571428714 NA 0.868774214553 0.094488035162 NA 0.094488035162 0.094488035162 0.309523809524 0.0 0.0 NC_045512.2:1278-1310 + 1278 1310 11 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1277;33;0&p=30&e=30&w=0&f=1278-1310", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1278-1310&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -10.4956181818 1.0 1.30303030303 -8.05477674417 -4.03609090909 -6.45952727271 NA 0.553683867817 1.0 NA 0.886817515872 0.528390037441 0.424242424242 0.6875 0.878787878788 NC_045512.2:18154-18291 - 18154 18291 46 NotMaximal ACG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18153;138;0&s=-&p=30&e=30&w=0&f=18154-18291-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18154-18291&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.5174217391 1.0 1.01449275362 -10.3671728571 -16.392826087 5.87540434786 NA 0.51667263552 1.0 NA 0.976900537197 0.486049161647 0.376811594203 0.612426035503 0.0 NC_045512.2:16844-16891 + 16844 16891 16 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16843;48;0&p=30&e=30&w=0&f=16844-16891", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16844-16891&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -10.5209625 1.0 0.833333333333 -12.625155 -9.2897 -1.2312625 NA 1.0 1.0 NA 1.0 1.0 0.395833333333 0.545454545455 0.0 NC_045512.2:12150-12203 + 12150 12203 18 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12149;54;0&p=30&e=30&w=0&f=12150-12203", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12150-12203&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -10.5229722222 1.0 0.944444444444 -11.1419705882 -10.00455 -0.5184222222 NA 1.0 0.408689565359 NA 1.0 0.408689565359 0.37037037037 0.0 0.0740740740741 NC_045512.2:8240-8359 - 8240 8359 40 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8239;120;0&s=-&p=30&e=30&w=0&f=8240-8359-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8240-8359&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.526025 1.0 1.23333333333 -8.53461486486 -20.3694425 9.8434175 0.951466710077 0.813755494058 0.520800911607 0.487683542243 1.0 0.487683542243 0.408333333333 0.8 0.0 NC_045512.2:4466-4516 - 4466 4516 17 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4465;51;0&s=-&p=30&e=30&w=0&f=4466-4516-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4466-4516&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.5297470588 1.0 1.88235294118 -5.59392812499 -22.5581176471 12.0283705883 NA 0.094488035162 1.0 NA 0.617209832329 0.0883998046557 0.333333333333 0.980769230769 0.0 NC_045512.2:4703-4732 - 4703 4732 10 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4702;30;0&s=-&p=30&e=30&w=0&f=4703-4732-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4703-4732&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.52976 1.0 1.23333333333 -8.53764324324 -14.09717 3.56741 NA 0.995940094416 1.0 NA 0.450441152531 0.450441152531 0.4 0.857142857143 0.0 NC_045512.2:10846-10902 + 10846 10902 19 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10845;57;0&p=30&e=30&w=0&f=10846-10902", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10846-10902&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -10.5375052632 1.0 1.0 -10.5375052632 -11.7666789474 1.22917368417 NA 1.0 1.0 NA 1.0 1.0 0.368421052632 0.581632653061 0.0 NC_045512.2:15610-15684 - 15610 15684 25 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15609;75;0&s=-&p=30&e=30&w=0&f=15610-15684-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15610-15684&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.549964 1.0 1.09333333333 -9.64935731707 -16.869976 6.320012 NA 0.800680449292 0.917548429106 NA 0.732814585707 0.53571219274 0.346666666667 0.454545454545 0.0 NC_045512.2:19703-19738 + 19703 19738 12 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19702;36;0&p=30&e=30&w=0&f=19703-19738", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19703-19738&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -10.5594833333 1.0 1.30555555556 -8.08811489359 -13.6337 3.0742166667 NA 0.670844864073 0.343053882468 NA 0.983005046394 0.343053882468 0.333333333333 0.0 0.0 NC_045512.2:4703-4735 - 4703 4735 11 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4702;33;0&s=-&p=30&e=30&w=0&f=4703-4735-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4703-4735&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.5631909091 1.0 1.24242424242 -8.50208048781 -14.3774363636 3.81424545454 NA 0.995940094416 1.0 NA 0.254738727006 0.254738727006 0.393939393939 0.785714285714 0.0 NC_045512.2:12162-12203 + 12162 12203 14 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12161;42;0&p=30&e=30&w=0&f=12162-12203", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12162-12203&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -10.5683214286 1.0 0.952380952381 -11.0967375 -11.9356214286 1.36729999997 NA 1.0 0.408689565359 NA 1.0 0.408689565359 0.357142857143 0.0 0.0952380952381 NC_045512.2:1394-1516 - 1394 1516 41 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1393;123;0&s=-&p=30&e=30&w=0&f=1394-1516-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1394-1516&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.5683536585 1.0 1.49593495935 -7.06471467389 -17.8135536585 7.24520000004 0.0 0.0 0.27465733355 0.0 0.569539313039 0.0 0.455284552846 0.48046875 0.414634146341 NC_045512.2:20416-20454 - 20416 20454 13 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20415;39;0&s=-&p=30&e=30&w=0&f=20416-20454-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20416-20454&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.5730153846 1.0 1.35897435897 -7.78014339622 -17.1496846154 6.57666923078 NA 0.912111346248 0.890405339411 NA 0.874764772912 0.581204623148 0.282051282051 0.0 0.0 NC_045512.2:13233-13265 + 13233 13265 11 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13232;33;0&p=30&e=30&w=0&f=13233-13265", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13233-13265&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -10.5773909091 1.0 0.818181818182 -12.9279222222 -7.01983636364 -3.55755454546 NA 0.364759889305 1.0 NA 1.0 0.364759889305 0.545454545455 0.814814814815 0.515151515152 NC_045512.2:7607-7666 - 7607 7666 20 Maximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7606;60;0&s=-&p=30&e=30&w=0&f=7607-7666-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7607-7666&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.57756 1.0 1.25 -8.462048 -19.167285 8.589725 NA 0.094488035162 0.840146508221 NA 0.875259645125 0.0174377340062 0.316666666667 0.0 0.0 NC_045512.2:14281-14349 - 14281 14349 23 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14280;69;0&s=-&p=30&e=30&w=0&f=14281-14349-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14281-14349&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.5788173913 1.0 0.913043478261 -11.5863238095 -17.2500304348 6.67121304348 NA 0.480582777145 0.874751749959 NA 0.923949210483 0.460133485268 0.333333333333 0.522727272727 0.0 NC_045512.2:29277-29330 + 29277 29330 18 Maximal GUG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29276;54;0&p=30&e=30&w=0&f=29277-29330", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29277-29330&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -10.5843888889 1.0 1.01851851852 -10.3919454546 -2.32189444444 -8.26249444446 NA 0.884951977861 0.584675240111 NA 0.343053882468 0.0174377340062 0.351851851852 0.0 0.0 NC_045512.2:11085-11141 + 11085 11141 19 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;11084;57;0&p=30&e=30&w=0&f=11085-11141", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:11085-11141&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -10.5892105263 1.0 1.01754385965 -10.406637931 -6.45553684211 -4.13367368419 0.73288295621 0.094488035162 0.857287970047 0.094488035162 1.0 0.094488035162 0.333333333333 0.0 0.0 NC_045512.2:1394-1618 - 1394 1618 75 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1393;225;0&s=-&p=30&e=30&w=0&f=1394-1618-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1394-1618&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.591272 1.0 1.58666666667 -6.67517142857 -17.38576 6.794488 NA 0.0 0.0174377340062 NA 0.815484291063 0.0 0.453333333333 0.528996865204 0.226666666667 NC_045512.2:701-778 - 701 778 26 NotMaximal ACG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;700;78;0&s=-&p=30&e=30&w=0&f=701-778-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:701-778&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.6045961538 1.0 1.26923076923 -8.3551363636 -12.2311961538 1.62660000005 NA 1.0 0.984346410549 NA 0.89048022139 0.871124857561 0.448717948718 0.769736842105 0.730769230769 NC_045512.2:5690-5719 - 5690 5719 10 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5689;30;0&s=-&p=30&e=30&w=0&f=5690-5719-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5690-5719&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.63953 1.0 1.8 -5.91085 -10.05884 -0.58069 0.094488035162 0.44354875468 0.495087090998 0.0 0.912111346248 0.0 0.466666666667 0.0 0.0 NC_045512.2:3491-3529 - 3491 3529 13 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3490;39;0&s=-&p=30&e=30&w=0&f=3491-3529-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3491-3529&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.6442769231 0.9998 2.0007853236 -5.32004948133 -23.7485692308 13.1042923077 NA 0.436128927234 0.984811981117 NA 0.890405339411 0.420940908351 0.358974358974 0.0 0.0 NC_045512.2:27541-27621 - 27541 27621 27 Maximal CUG NearCognate ORF7a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27540;81;0&s=-&p=30&e=30&w=0&f=27541-27621-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27541-27621&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.6500481481 1.0 1.59259259259 -6.68723953485 -20.1834333333 9.53338518523 NA 0.094488035162 0.477942373433 NA 1.0 0.094488035162 0.41975308642 0.852631578947 0.0 NC_045512.2:24241-24273 + 24241 24273 11 NotMaximal AUU NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24240;33;0&p=30&e=30&w=0&f=24241-24273", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24241-24273&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -10.6769181818 1.0 1.0303030303 -10.3628911765 -16.7116 6.0346818182 NA 0.893739215367 1.0 NA 0.0 0.0 0.30303030303 0.0 0.151515151515 NC_045512.2:15353-15403 + 15353 15403 17 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15352;51;0&p=30&e=30&w=0&f=15353-15403", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15353-15403&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -10.6852941176 1.0 0.705882352941 -15.1374999999 -12.3683294118 1.68303529416 NA 1.0 1.0 NA 1.0 1.0 0.411764705882 1.41666666667 0.56862745098 NC_045512.2:28629-28688 + 28629 28688 20 NotMaximal CUG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28628;60;0&p=30&e=30&w=0&f=28629-28688", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28629-28688&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -10.68721 1.0 0.916666666667 -11.6587745455 -9.235305 -1.451905 NA 1.0 0.706439850236 NA 0.390053719681 0.094488035162 0.516666666667 0.252100840336 0.0 NC_045512.2:13913-13948 - 13913 13948 12 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13912;36;0&s=-&p=30&e=30&w=0&f=13913-13948-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13913-13948&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.6954916667 1.0 0.861111111111 -12.4205709678 -17.11485 6.4193583333 NA 0.997997720983 1.0 NA 0.0174377340062 0.0174377340062 0.333333333333 0.0 0.0 NC_045512.2:3491-3532 - 3491 3532 14 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3490;42;0&s=-&p=30&e=30&w=0&f=3491-3532-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3491-3532&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.7009 0.9999 2.04834827668 -5.22416042322 -21.9031357143 11.2022357143 NA 0.436128927234 0.985889630474 NA 0.814999186065 0.333954094091 0.357142857143 0.0 0.0 NC_045512.2:16513-16593 - 16513 16593 27 Maximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16512;81;0&s=-&p=30&e=30&w=0&f=16513-16593-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16513-16593&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.701762963 1.0 1.01234567901 -10.5712536586 -17.0798962963 6.3781333333 NA 0.656496825655 1.0 NA 1.0 0.656496825655 0.345679012346 0.45 0.0 NC_045512.2:16739-16795 + 16739 16795 19 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16738;57;0&p=30&e=30&w=0&f=16739-16795", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16739-16795&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -10.7041421053 1.0 0.947368421053 -11.2988166667 -7.22471052632 -3.47943157898 NA 0.912111346248 0.0174377340062 NA 0.912111346248 0.0174377340062 0.385964912281 0.95 0.0 NC_045512.2:7665-7706 + 7665 7706 14 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7664;42;0&p=30&e=30&w=0&f=7665-7706", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7665-7706&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -10.7113642857 1.0 1.02380952381 -10.4622627907 -12.4393428571 1.72797857144 0.875259645125 0.390053719681 0.855441966466 0.364759889305 1.0 0.390053719681 0.380952380952 0.666666666667 0.0 NC_045512.2:15137-15166 - 15137 15166 10 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15136;30;0&s=-&p=30&e=30&w=0&f=15137-15166-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15137-15166&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.71149 1.0 0.466666666667 -22.9531928571 -8.07668 -2.63481 NA 0.890405339411 0.890405339411 NA 0.918824678496 0.809230017907 0.266666666667 0.0 0.466666666667 NC_045512.2:7668-7706 + 7668 7706 13 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7667;39;0&p=30&e=30&w=0&f=7668-7706", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7668-7706&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -10.7186461538 1.0 1.02564102564 -10.45068 -12.8976769231 2.17903076928 NA 0.390053719681 0.855441966466 NA 1.0 0.390053719681 0.384615384615 0.696428571429 0.0 NC_045512.2:19627-19728 - 19627 19728 34 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19626;102;0&s=-&p=30&e=30&w=0&f=19627-19728-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19627-19728&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.7194352941 1.0 1.48039215686 -7.24094304635 -17.9944058824 7.27497058825 NA 1.0 0.994989418851 NA 0.960569754192 0.955559173042 0.333333333333 0.0 0.0 NC_045512.2:18154-18324 - 18154 18324 57 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18153;171;0&s=-&p=30&e=30&w=0&f=18154-18324-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18154-18324&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.7272561404 1.0 1.02923976608 -10.4225045455 -16.9738473684 6.24659122802 1.0 0.51667263552 1.0 0.51667263552 1.0 0.51667263552 0.409356725146 0.707196029777 0.0 NC_045512.2:28899-28934 - 28899 28934 12 NotMaximal AAG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28898;36;0&s=-&p=30&e=30&w=0&f=28899-28934-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28899-28934&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.73125 0.9927 1.26070637484 -8.51209307268 -11.4978666667 0.766616666667 NA 0.094488035162 0.477942373433 NA 0.368347712844 0.094488035162 0.555555555556 0.395604395604 0.0 NC_045512.2:4028-4063 - 4028 4063 12 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4027;36;0&s=-&p=30&e=30&w=0&f=4028-4063-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4028-4063&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.7396666667 1.0 1.80555555556 -5.94812307694 -17.906875 7.1672083333 NA 0.438704216181 0.876008464919 NA 0.890405339411 0.094488035162 0.305555555556 0.0 0.0 NC_045512.2:3581-3652 - 3581 3652 24 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3580;72;0&s=-&p=30&e=30&w=0&f=3581-3652-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3581-3652&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.7407291667 1.0 1.58333333333 -6.78361842107 -21.5554625 10.8147333333 NA 0.0 0.094488035162 NA 0.706439850236 0.0 0.416666666667 0.642857142857 0.0 NC_045512.2:10487-10543 - 10487 10543 19 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10486;57;0&s=-&p=30&e=30&w=0&f=10487-10543-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10487-10543&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.7529578947 1.0 0.964912280702 -11.1439745454 -19.0248684211 8.27191052635 NA 0.697340061859 1.0 NA 1.0 0.697340061859 0.350877192982 0.0 0.368421052632 NC_045512.2:26856-26921 - 26856 26921 22 Maximal AAG NearCognate M =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26855;66;0&s=-&p=30&e=30&w=0&f=26856-26921-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26856-26921&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.7534227273 1.0 1.34848484848 -7.97444831463 -19.3761318182 8.62270909088 NA 0.666280319062 0.912111346248 NA 0.477942373433 0.094488035162 0.454545454545 0.75 0.0 NC_045512.2:1394-1675 - 1394 1675 94 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1393;282;0&s=-&p=30&e=30&w=0&f=1394-1675-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1394-1675&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.7603659574 1.0 1.6170212766 -6.65443684208 -18.1180202128 7.35765425537 NA 0.0 0.0174377340062 NA 0.812029952792 0.0 0.418439716312 0.493006993007 0.18085106383 NC_045512.2:29292-29330 + 29292 29330 13 Maximal AUG Canonical N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29291;39;0&p=30&e=30&w=0&f=29292-29330", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29292-29330&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -10.7850384615 1.0 1.07692307692 -10.0146785714 -2.3159 -8.4691384615 1.0 0.884951977861 0.94974116881 0.861852515058 1.0 0.861852515058 0.307692307692 0.0 0.0 NC_045512.2:1394-1630 - 1394 1630 79 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1393;237;0&s=-&p=30&e=30&w=0&f=1394-1630-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1394-1630&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.7871860759 1.0 1.60337552743 -6.72779763155 -17.6667531646 6.87956708866 NA 0.0 0.0174377340062 NA 0.51811492756 0.0 0.447257383966 0.512802019473 0.215189873418 NC_045512.2:20744-20776 + 20744 20776 11 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20743;33;0&p=30&e=30&w=0&f=20744-20776", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20744-20776&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -10.7915727273 1.0 0.969696969697 -11.128809375 -12.9854 2.1938272727 NA 1.0 0.912111346248 NA 1.0 0.912111346248 0.363636363636 0.0 0.515151515152 NC_045512.2:10670-10771 - 10670 10771 34 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10669;102;0&s=-&p=30&e=30&w=0&f=10670-10771-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10670-10771&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.7923794118 1.0 1.03921568627 -10.3851198114 -18.8919588235 8.09957941173 NA 0.457834934071 0.526264040371 NA 1.0 0.0174377340062 0.382352941176 0.539682539683 0.0 NC_045512.2:18154-18285 - 18154 18285 44 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18153;132;0&s=-&p=30&e=30&w=0&f=18154-18285-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18154-18285&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.7948818182 1.0 1.0303030303 -10.4773852941 -16.6715909091 5.87670909089 0.519550708123 0.51667263552 1.0 0.0174377340062 1.0 0.51667263552 0.371212121212 0.44 0.0 NC_045512.2:16700-16795 + 16700 16795 32 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16699;96;0&p=30&e=30&w=0&f=16700-16795", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16700-16795&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -10.79670625 1.0 1.0 -10.79670625 -9.998896875 -0.797809375 NA 0.912111346248 0.0174377340062 NA 0.986114276412 0.0174377340062 0.40625 0.507936507937 0.114583333333 NC_045512.2:16571-16600 + 16571 16600 10 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16570;30;0&p=30&e=30&w=0&f=16571-16600", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16571-16600&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -10.79728 1.0 0.733333333333 -14.7235636364 -5.66426 -5.13302 NA 0.0174377340062 1.0 NA 0.994989418851 0.0174377340062 0.4 0.0 0.0 NC_045512.2:8240-8365 - 8240 8365 42 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8239;126;0&s=-&p=30&e=30&w=0&f=8240-8365-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8240-8365&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.8037309524 1.0 1.26984126984 -8.50793812502 -21.4230285714 10.619297619 NA 0.813755494058 0.520800911607 NA 0.972840631613 0.444369200716 0.388888888889 0.84 0.0 NC_045512.2:20836-20865 - 20836 20865 10 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20835;30;0&s=-&p=30&e=30&w=0&f=20836-20865-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20836-20865&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.81394 1.0 1.06666666667 -10.13806875 -19.78212 8.96818 0.718023766889 0.68944489663 1.0 0.424463617125 1.0 0.68944489663 0.333333333333 0.0 0.0 NC_045512.2:12705-12770 + 12705 12770 22 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12704;66;0&p=30&e=30&w=0&f=12705-12770", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12705-12770&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -10.8255045455 1.0 0.80303030303 -13.4808169812 -11.7997818182 0.974277272682 NA 0.0174377340062 0.452648543057 NA 0.343053882468 0.0174377340062 0.484848484848 0.776470588235 0.0 NC_045512.2:7691-7741 - 7691 7741 17 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7690;51;0&s=-&p=30&e=30&w=0&f=7691-7741-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7691-7741&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.8294411765 1.0 1.41176470588 -7.67085416669 -22.4887764706 11.6593352941 NA 0.368347712844 0.795165228716 NA 0.990900211623 0.359247924467 0.352941176471 0.708333333333 0.0 NC_045512.2:8240-8371 - 8240 8371 44 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8239;132;0&s=-&p=30&e=30&w=0&f=8240-8371-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8240-8371&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.8305681818 1.0 1.30303030303 -8.31183139533 -21.6545931818 10.824025 NA 0.813755494058 0.520800911607 NA 1.0 0.487683542243 0.409090909091 0.905349794239 0.0 NC_045512.2:8240-8356 - 8240 8356 39 NotMaximal ACG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8239;117;0&s=-&p=30&e=30&w=0&f=8240-8356-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8240-8356&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.8313846154 1.0 1.23931623932 -8.73980689656 -20.6638358974 9.83245128204 NA 0.813755494058 0.520800911607 NA 0.368347712844 0.094488035162 0.410256410256 0.8125 0.0 NC_045512.2:19549-19584 - 19549 19584 12 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19548;36;0&s=-&p=30&e=30&w=0&f=19549-19584-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19549-19584&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.8513 1.0 1.30555555556 -8.31163404255 -17.2434916667 6.39219166667 NA 0.452876444734 0.658583753866 NA 0.723395734983 0.0174377340062 0.388888888889 0.0 0.0 NC_045512.2:8240-8386 - 8240 8386 49 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8239;147;0&s=-&p=30&e=30&w=0&f=8240-8386-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8240-8386&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.8600673469 1.0 1.26530612245 -8.58295645158 -20.4904346939 9.63036734698 NA 0.813755494058 0.520800911607 NA 1.0 0.487683542243 0.408163265306 0.816666666667 0.0 NC_045512.2:29301-29330 + 29301 29330 10 NotMaximal AUC NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29300;30;0&p=30&e=30&w=0&f=29301-29330", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29301-29330&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -10.86031 1.0 1.2 -9.05025833333 -2.74503 -8.11528 NA 0.884951977861 0.94974116881 NA 0.912111346248 0.861852515058 0.3 0.0 0.0 NC_045512.2:17846-17908 + 17846 17908 21 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17845;63;0&p=30&e=30&w=0&f=17846-17908", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17846-17908&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -10.8604095238 1.0 0.984126984127 -11.0355774193 -13.9361666667 3.07575714287 NA 0.309809539313 1.0 NA 1.0 0.309809539313 0.396825396825 0.0 0.0 NC_045512.2:2051-2086 - 2051 2086 12 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2050;36;0&s=-&p=30&e=30&w=0&f=2051-2086-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:2051-2086&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.8633083333 1.0 1.80555555556 -6.01660153844 -25.0766333333 14.213325 NA 0.085388246785 0.987637961908 NA 1.0 0.085388246785 0.444444444444 0.0 0.0 NC_045512.2:19627-19668 - 19627 19668 14 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19626;42;0&s=-&p=30&e=30&w=0&f=19627-19668-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19627-19668&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.8643285714 1.0 1.42857142857 -7.60502999998 -22.3245214286 11.4601928572 NA 1.0 1.0 NA 0.94974116881 0.94974116881 0.309523809524 0.0 0.0 NC_045512.2:18154-18351 - 18154 18351 66 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18153;198;0&s=-&p=30&e=30&w=0&f=18154-18351-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18154-18351&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.8668469697 1.0 1.08585858586 -10.007607907 -17.3915681818 6.52472121212 NA 0.51667263552 1.0 NA 0.323395734983 0.239264203158 0.414141414141 0.597826086957 0.0 NC_045512.2:1333-1362 + 1333 1362 10 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1332;30;0&p=30&e=30&w=0&f=1333-1362", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1333-1362&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -10.87844 1.0 1.03333333333 -10.5275225806 -20.16883 9.29039 NA 0.485196158229 0.094488035162 NA 1.0 0.0 0.4 0.0 0.9 NC_045512.2:18086-18184 + 18086 18184 33 Maximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18085;99;0&p=30&e=30&w=0&f=18086-18184", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18086-18184&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -10.8804484848 1.0 0.989898989899 -10.9914734693 -9.57374848485 -1.30669999995 NA 1.0 0.986114276412 NA 0.887123555266 0.871193228064 0.434343434343 0.0 0.0 NC_045512.2:26041-26073 - 26041 26073 11 NotMaximal AUG Canonical ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26040;33;0&s=-&p=30&e=30&w=0&f=26041-26073-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26041-26073&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.8956363636 1.0 2.30303030303 -4.73099999998 -27.5161272727 16.6204909091 0.094488035162 0.094488035162 0.847341689728 0.094488035162 0.828412827609 0.094488035162 0.393939393939 0.0 0.454545454545 NC_045512.2:15487-15561 - 15487 15561 25 Maximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15486;75;0&s=-&p=30&e=30&w=0&f=15487-15561-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15487-15561&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.900324 1.0 0.946666666667 -11.5144267606 -13.880456 2.980132 NA 0.655686146834 1.0 NA 0.715419176298 0.535751261599 0.4 0.333333333333 0.0 NC_045512.2:17969-18049 + 17969 18049 27 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17968;81;0&p=30&e=30&w=0&f=17969-18049", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17969-18049&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -10.9005518519 1.0 1.16049382716 -9.39302872345 -10.9255037037 0.0249518518037 NA 0.996060556731 0.495861956699 NA 0.861946931467 0.413410385805 0.358024691358 0.389423076923 0.0 NC_045512.2:4590-4622 + 4590 4622 11 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4589;33;0&p=30&e=30&w=0&f=4590-4622", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4590-4622&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -10.9007909091 1.0 1.18181818182 -9.22374615385 -11.5847545455 0.683963636355 0.912111346248 0.706439850236 0.541071137881 0.541071137881 0.912111346248 0.541071137881 0.393939393939 0.0 0.0 NC_045512.2:8675-8764 - 8675 8764 30 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8674;90;0&s=-&p=30&e=30&w=0&f=8675-8764-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8675-8764&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.93191 1.0 1.4 -7.80850714286 -19.4851533333 8.55324333333 NA 0.094488035162 0.97661728797 NA 0.0174377340062 0.0174377340062 0.388888888889 0.3 0.0 NC_045512.2:28320-28427 - 28320 28427 36 Maximal AAG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28319;108;0&s=-&p=30&e=30&w=0&f=28320-28427-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28320-28427&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.9344916667 0.9918 1.19444444444 -9.15445813956 -10.7811777778 -0.153313888922 NA 1.0 0.659514895002 NA 1.0 0.659514895002 0.518518518519 0.964285714286 0.296296296296 NC_045512.2:12666-12770 + 12666 12770 35 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12665;105;0&p=30&e=30&w=0&f=12666-12770", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12666-12770&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -10.9646057143 1.0 0.885714285714 -12.3793935484 -12.0288857143 1.06427999999 NA 0.0174377340062 0.364759889305 NA 0.726218460036 0.0174377340062 0.438095238095 0.596590909091 0.0 NC_045512.2:17858-17908 + 17858 17908 17 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17857;51;0&p=30&e=30&w=0&f=17858-17908", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17858-17908&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -10.9670235294 1.0 0.921568627451 -11.900387234 -13.1087352941 2.14171176472 1.0 0.309809539313 1.0 0.309809539313 1.0 0.309809539313 0.372549019608 0.0 0.0 NC_045512.2:17168-17200 + 17168 17200 11 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17167;33;0&p=30&e=30&w=0&f=17168-17200", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17168-17200&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -10.9746090909 1.0 0.909090909091 -12.07207 -9.78320909091 -1.19139999999 0.895116392642 0.890405339411 1.0 0.68944489663 1.0 0.890405339411 0.484848484848 0.55 0.0 NC_045512.2:10670-10768 - 10670 10768 33 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10669;99;0&s=-&p=30&e=30&w=0&f=10670-10768-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10670-10768&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.9852090909 1.0 1.07070707071 -10.2597707547 -18.2596212121 7.27441212122 NA 0.457834934071 0.526264040371 NA 0.688731889956 0.0174377340062 0.393939393939 0.52380952381 0.0 NC_045512.2:16688-16795 + 16688 16795 36 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16687;108;0&p=30&e=30&w=0&f=16688-16795", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16688-16795&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -10.9884916667 1.0 0.962962962963 -11.4111259616 -9.54719166667 -1.44130000003 NA 0.912111346248 0.0174377340062 NA 0.906023115741 0.0174377340062 0.407407407407 0.670807453416 0.212962962963 NC_045512.2:7487-7549 - 7487 7549 21 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7486;63;0&s=-&p=30&e=30&w=0&f=7487-7549-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7487-7549&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.9941190476 1.0 1.20634920635 -9.11354605262 -25.2282238095 14.2341047619 NA 0.404707797493 1.0 NA 0.912111346248 0.404707797493 0.31746031746 1.3125 0.0 NC_045512.2:16802-16834 - 16802 16834 11 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16801;33;0&s=-&p=30&e=30&w=0&f=16802-16834-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16802-16834&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -10.9965818182 1.0 0.666666666667 -16.4948727273 -12.1811454545 1.18456363635 NA 0.808660263715 1.0 NA 1.0 0.808660263715 0.333333333333 0.0 0.0 NC_045512.2:27875-27952 + 27875 27952 26 Maximal UUG NearCognate ORF7b,ORF8 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27874;78;0&p=30&e=30&w=0&f=27875-27952", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27875-27952&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -10.9977884615 0.6982 3.75078877481 -2.93212684632 -14.2381269231 3.24033846158 NA 0.094488035162 0.477942373433 NA 0.68114601986 0.0174377340062 0.371794871795 0.764705882353 0.461538461538 NC_045512.2:701-820 - 701 820 40 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;700;120;0&s=-&p=30&e=30&w=0&f=701-820-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:701-820&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.02105 1.0 1.35833333333 -8.11365644172 -15.1903275 4.1692775 NA 1.0 0.984346410549 NA 1.0 0.984346410549 0.475 0.893300248139 0.475 NC_045512.2:16727-16795 + 16727 16795 23 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16726;69;0&p=30&e=30&w=0&f=16727-16795", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16727-16795&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -11.0254 1.0 0.927536231884 -11.886759375 -7.71636521739 -3.30903478261 NA 0.912111346248 0.0174377340062 NA 0.830001627869 0.0174377340062 0.391304347826 0.758241758242 0.0 NC_045512.2:7662-7706 + 7662 7706 15 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7661;45;0&p=30&e=30&w=0&f=7662-7706", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7662-7706&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -11.0317933333 1.0 1.08888888889 -10.1312387755 -11.47904 0.4472466667 NA 0.390053719681 0.855441966466 NA 0.784955233599 0.390053719681 0.4 0.584415584416 0.0 NC_045512.2:14960-14995 + 14960 14995 12 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14959;36;0&p=30&e=30&w=0&f=14960-14995", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14960-14995&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -11.0408166667 1.0 0.694444444444 -15.898776 -7.12968333333 -3.91113333337 NA 1.0 1.0 NA 0.924405013837 0.924405013837 0.305555555556 0.0 0.0 NC_045512.2:15347-15403 + 15347 15403 19 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15346;57;0&p=30&e=30&w=0&f=15347-15403", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15347-15403&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -11.0532526316 1.0 0.736842105263 -15.0008428572 -10.7138947368 -0.339357894758 NA 1.0 1.0 NA 0.942891095556 0.942891095556 0.40350877193 1.31538461538 0.614035087719 NC_045512.2:11863-11919 + 11863 11919 19 Maximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;11862;57;0&p=30&e=30&w=0&f=11863-11919", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:11863-11919&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -11.0585 1.0 1.14035087719 -9.69745384615 -18.7987684211 7.74026842105 NA 0.645004069673 0.293084811981 NA 1.0 0.293084811981 0.40350877193 0.0 0.0 NC_045512.2:12486-12530 - 12486 12530 15 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12485;45;0&s=-&p=30&e=30&w=0&f=12486-12530-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12486-12530&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.0787666667 1.0 1.04444444444 -10.6073297873 -15.0215333333 3.94276666663 0.452648543057 0.0174377340062 1.0 0.0174377340062 1.0 0.0174377340062 0.311111111111 0.9375 0.6 NC_045512.2:27541-27597 - 27541 27597 19 NotMaximal AGG NearCognate ORF7a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27540;57;0&s=-&p=30&e=30&w=0&f=27541-27597-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27541-27597&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.0797421053 1.0 1.57894736842 -7.01717000002 -21.9517894737 10.8720473684 NA 0.094488035162 0.477942373433 NA 0.477942373433 0.094488035162 0.385964912281 0.0 0.0 NC_045512.2:10044-10112 + 10044 10112 23 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10043;69;0&p=30&e=30&w=0&f=10044-10112", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10044-10112&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -11.0828956522 1.0 0.95652173913 -11.5866636364 -12.5162043478 1.43330869563 NA 0.539195832655 1.0 NA 0.814406641706 0.465577079603 0.405797101449 0.0 0.391304347826 NC_045512.2:17410-17448 - 17410 17448 13 Maximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17409;39;0&s=-&p=30&e=30&w=0&f=17410-17448-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17410-17448&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.0829384615 1.0 1.41025641026 -7.85881090906 -23.7771769231 12.6942384616 NA 0.680862770633 1.0 NA 1.0 0.680862770633 0.512820512821 0.787878787879 0.0 NC_045512.2:8240-8416 - 8240 8416 59 Maximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8239;177;0&s=-&p=30&e=30&w=0&f=8240-8416-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8240-8416&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.0844067797 1.0 1.35028248588 -8.20895397492 -21.0618288136 9.97742203386 NA 0.813755494058 0.25216343806 NA 0.393276900537 0.094488035162 0.389830508475 0.893939393939 0.0 NC_045512.2:10083-10112 + 10083 10112 10 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10082;30;0&p=30&e=30&w=0&f=10083-10112", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10083-10112&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -11.08572 1.0 0.966666666667 -11.4679862069 -10.81285 -0.27287 NA 0.539195832655 1.0 NA 0.359830701612 0.0 0.433333333333 0.0 0.0 NC_045512.2:6398-6460 - 6398 6460 21 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6397;63;0&s=-&p=30&e=30&w=0&f=6398-6460-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6398-6460&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.0955619048 0.9813 0.922004270146 -12.0341762658 -2.98756190476 -8.10800000004 NA 0.094488035162 0.943555266157 NA 0.390053719681 0.094488035162 0.380952380952 0.440559440559 1.0 NC_045512.2:12702-12770 + 12702 12770 23 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12701;69;0&p=30&e=30&w=0&f=12702-12770", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12702-12770&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -11.1116695652 1.0 0.884057971014 -12.5689377049 -11.8078826087 0.696213043496 NA 0.0174377340062 0.452648543057 NA 0.452648543057 0.0174377340062 0.492753623188 0.71875 0.0 NC_045512.2:17981-18049 + 17981 18049 23 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17980;69;0&p=30&e=30&w=0&f=17981-18049", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17981-18049&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -11.1192173913 1.0 1.26086956522 -8.81868965517 -11.9227478261 0.803530434787 1.0 0.996060556731 0.495861956699 0.495861956699 1.0 0.495861956699 0.36231884058 0.448051948052 0.0 NC_045512.2:10670-10777 - 10670 10777 36 Maximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10669;108;0&s=-&p=30&e=30&w=0&f=10670-10777-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10670-10777&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.12325 1.0 1.03703703704 -10.7259910714 -17.4993527778 6.37610277778 NA 0.457834934071 0.526264040371 NA 0.73792935048 0.0174377340062 0.388888888889 0.490909090909 0.0 NC_045512.2:18154-18309 - 18154 18309 52 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18153;156;0&s=-&p=30&e=30&w=0&f=18154-18309-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18154-18309&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.1255980769 1.0 1.05769230769 -10.5187472727 -16.4848096154 5.35921153848 NA 0.51667263552 1.0 NA 0.795158717239 0.368500732541 0.391025641026 0.672413793103 0.0 NC_045512.2:18623-18703 - 18623 18703 27 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18622;81;0&s=-&p=30&e=30&w=0&f=18623-18703-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18623-18703&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.1256703704 1.0 1.11111111111 -10.0131033334 -11.9165111111 0.790840740711 NA 0.0174377340062 0.0174377340062 NA 0.703372944815 0.0174377340062 0.444444444444 0.501547987616 0.0 NC_045512.2:25296-25328 - 25296 25328 11 NotMaximal AUU NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25295;33;0&s=-&p=30&e=30&w=0&f=25296-25328-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25296-25328&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.1306181818 1.0 1.57575757576 -7.06366153845 -13.4808545455 2.35023636365 NA 0.917330294644 1.0 NA 0.962256226599 0.879586521244 0.484848484848 0.0 1.0 NC_045512.2:7433-7480 - 7433 7480 16 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7432;48;0&s=-&p=30&e=30&w=0&f=7433-7480-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7433-7480&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.133725 1.0 1.47916666667 -7.52702535211 -18.3789 7.245175 NA 0.094488035162 1.0 NA 0.0 0.0 0.291666666667 2.0 0.0 NC_045512.2:23540-23587 - 23540 23587 16 NotMaximal CUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23539;48;0&s=-&p=30&e=30&w=0&f=23540-23587-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23540-23587&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.1371875 1.0 1.20833333333 -9.21698275862 -22.6531875 11.516 NA 0.326052417386 1.0 NA 0.706439850236 0.326052417386 0.4375 0.461538461538 1.0 NC_045512.2:16658-16795 + 16658 16795 46 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16657;138;0&p=30&e=30&w=0&f=16658-16795", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16658-16795&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -11.1511195652 1.0 0.942028985507 -11.8373423077 -11.1392521739 -0.011867391287 NA 0.912111346248 0.0174377340062 NA 0.983005046394 0.0174377340062 0.398550724638 0.552 0.195652173913 NC_045512.2:23768-23797 - 23768 23797 10 Maximal AUC NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23767;30;0&s=-&p=30&e=30&w=0&f=23768-23797-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23768-23797&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.15425 1.0 1.4 -7.96732142857 -23.27534 12.12109 NA 0.586387758424 1.0 NA 0.804779423734 0.35273644799 0.333333333333 0.0 0.0 NC_045512.2:701-826 - 701 826 42 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;700;126;0&s=-&p=30&e=30&w=0&f=701-826-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:701-826&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.1572 1.0 1.4126984127 -7.89779325843 -15.2754738095 4.11827380952 NA 1.0 0.984346410549 NA 0.632375061045 0.632375061045 0.47619047619 0.989898989899 0.452380952381 NC_045512.2:12741-12788 - 12741 12788 16 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12740;48;0&s=-&p=30&e=30&w=0&f=12741-12788-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12741-12788&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.1646625 1.0 1.0625 -10.5079176471 -14.49766875 3.33300625 NA 0.832462965978 1.0 NA 0.452648543057 0.452648543057 0.416666666667 0.527472527473 0.0 NC_045512.2:11308-11367 + 11308 11367 20 Maximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;11307;60;0&p=30&e=30&w=0&f=11308-11367", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:11308-11367&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -11.18697 1.0 1.13333333333 -9.87085588235 -11.97514 0.78817 NA 1.0 0.890405339411 NA 1.0 0.890405339411 0.383333333333 0.0 0.0 NC_045512.2:20747-20776 + 20747 20776 10 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20746;30;0&p=30&e=30&w=0&f=20747-20776", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20747-20776&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -11.19358 1.0 1.06666666667 -10.49398125 -13.61498 2.4214 0.993661077649 1.0 0.912111346248 0.905772423897 1.0 0.912111346248 0.4 0.0 0.466666666667 NC_045512.2:5690-5770 - 5690 5770 27 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5689;81;0&s=-&p=30&e=30&w=0&f=5690-5770-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5690-5770&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.2001740741 1.0 1.40740740741 -7.95801842107 -13.975137037 2.77496296294 NA 0.44354875468 0.368347712844 NA 1.0 0.333954094091 0.444444444444 0.0 0.333333333333 NC_045512.2:7644-7706 + 7644 7706 21 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7643;63;0&p=30&e=30&w=0&f=7644-7706", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7644-7706&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -11.2034142857 1.0 0.920634920635 -12.1692258621 -10.5478857143 -0.655528571414 NA 0.390053719681 0.855441966466 NA 0.890405339411 0.094488035162 0.365079365079 0.5 0.0 NC_045512.2:25782-25814 + 25782 25814 11 NotMaximal CUG NearCognate ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25781;33;0&p=30&e=30&w=0&f=25782-25814", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25782-25814&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -11.2052909091 1.0 1.75757575758 -6.37542413794 -16.7242181818 5.51892727272 NA 0.978368875142 0.991001139508 NA 1.0 0.969370014651 0.393939393939 0.916666666667 0.0 NC_045512.2:16061-16099 - 16061 16099 13 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16060;39;0&s=-&p=30&e=30&w=0&f=16061-16099-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16061-16099&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.2066538462 1.0 0.794871794872 -14.0986935484 -14.8978384615 3.69118461534 NA 0.917548429106 1.0 NA 0.94158880026 0.859137229367 0.333333333333 0.0 0.0 NC_045512.2:12550-12579 + 12550 12579 10 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12549;30;0&p=30&e=30&w=0&f=12550-12579", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12550-12579&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -11.21042 1.0 0.966666666667 -11.5969862069 -17.48934 6.27892 NA 0.962279016767 0.600699983721 NA 1.0 0.533706657985 0.466666666667 0.0 0.0 NC_045512.2:5376-5408 + 5376 5408 11 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5375;33;0&p=30&e=30&w=0&f=5376-5408", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5376-5408&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -11.2156363636 1.0 0.848484848485 -13.2184285714 -12.1818727273 0.966236363673 NA 0.0894774540127 1.0 NA 0.857287970047 0.0894774540127 0.424242424242 0.0 0.0 NC_045512.2:18623-18700 - 18623 18700 26 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18622;78;0&s=-&p=30&e=30&w=0&f=18623-18700-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18623-18700&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.2167192308 1.0 1.11538461538 -10.0563689655 -12.0300846154 0.813365384585 NA 0.0174377340062 0.0174377340062 NA 1.0 0.0174377340062 0.435897435897 0.541666666667 0.0 NC_045512.2:11091-11141 + 11091 11141 17 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;11090;51;0&p=30&e=30&w=0&f=11091-11141", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:11091-11141&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -11.2206176471 1.0 1.05882352941 -10.59725 -6.68361176471 -4.53700588239 0.890405339411 0.094488035162 0.857287970047 0.094488035162 1.0 0.094488035162 0.352941176471 0.0 0.0 NC_045512.2:18391-18510 - 18391 18510 40 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18390;120;0&s=-&p=30&e=30&w=0&f=18391-18510-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18391-18510&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.2270625 1.0 1.34166666667 -8.36799689441 -16.7603875 5.533325 NA 1.0 0.826791469966 NA 0.0174377340062 0.0174377340062 0.383333333333 0.233918128655 0.075 NC_045512.2:28865-28894 - 28865 28894 10 NotMaximal AGG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28864;30;0&s=-&p=30&e=30&w=0&f=28865-28894-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28865-28894&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.23488 1.0 0.733333333333 -15.3202909091 -9.29513 -1.93975 NA 0.99467686798 0.706439850236 NA 0.87713495035 0.687846329155 0.566666666667 0.0 0.0 NC_045512.2:3148-3177 + 3148 3177 10 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3147;30;0&p=30&e=30&w=0&f=3148-3177", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3148-3177&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -11.235 0.9128 2.8249749695 -3.9770263883 -11.69928 0.46428 NA 0.0174377340062 0.340631613218 NA 0.915673123881 0.0174377340062 0.5 0.0 0.0 NC_045512.2:4589-4621 - 4589 4621 11 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4588;33;0&s=-&p=30&e=30&w=0&f=4589-4621-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4589-4621&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.2385363636 1.0 1.21212121212 -9.27179249997 -13.8878363636 2.64930000004 NA 0.869047696565 0.950200227902 NA 1.0 0.819247924467 0.363636363636 0.0 0.0 NC_045512.2:27915-27947 - 27915 27947 11 Maximal UUG NearCognate ORF8 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27914;33;0&s=-&p=30&e=30&w=0&f=27915-27947-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27915-27947&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.2476181818 0.6987 6.81253939584 -1.65101697447 -23.5366272727 12.2890090909 NA 0.337737261924 0.623040859515 NA 0.094488035162 0.094488035162 0.424242424242 0.0 0.454545454545 NC_045512.2:12547-12579 + 12547 12579 11 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12546;33;0&p=30&e=30&w=0&f=12547-12579", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12547-12579&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -11.2702272727 1.0 1.0303030303 -10.93875 -17.6906545455 6.42042727275 NA 0.962279016767 0.600699983721 NA 0.0174377340062 0.0 0.424242424242 0.0 0.0 NC_045512.2:28320-28424 - 28320 28424 35 NotMaximal ACG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28319;105;0&s=-&p=30&e=30&w=0&f=28320-28424-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28320-28424&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.27552 0.9916 1.21904761905 -9.24945 -11.1120257143 -0.163494285714 NA 1.0 0.659514895002 NA 1.0 0.659514895002 0.52380952381 0.972222222222 0.304761904762 NC_045512.2:27541-27618 - 27541 27618 26 NotMaximal AUA NearCognate ORF7a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27540;78;0&s=-&p=30&e=30&w=0&f=27541-27618-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27541-27618&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.2780423077 1.0 1.64102564103 -6.87255703125 -20.4552384615 9.17719615384 NA 0.094488035162 0.477942373433 NA 0.880478593521 0.0174377340062 0.410256410256 0.928571428571 0.0 NC_045512.2:6551-6580 - 6551 6580 10 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6550;30;0&s=-&p=30&e=30&w=0&f=6551-6580-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6551-6580&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.27835 0.996 1.56921571989 -7.18725275118 -21.77675 10.4984 NA 0.412316457757 0.962344131532 NA 0.094488035162 0.0174377340062 0.366666666667 0.0 0.2 NC_045512.2:25779-25814 + 25779 25814 12 NotMaximal UUG NearCognate ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25778;36;0&p=30&e=30&w=0&f=25779-25814", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25779-25814&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -11.282225 1.0 1.83333333333 -6.15394090909 -15.6743 4.392075 NA 0.978368875142 0.991001139508 NA 1.0 0.969370014651 0.388888888889 0.8 0.0 NC_045512.2:16703-16795 + 16703 16795 31 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16702;93;0&p=30&e=30&w=0&f=16703-16795", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16703-16795&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -11.2840967742 1.0 1.02150537634 -11.0465368421 -10.2578483871 -1.0262483871 NA 0.912111346248 0.0174377340062 NA 1.0 0.0174377340062 0.397849462366 0.543859649123 0.0860215053763 NC_045512.2:16652-16795 + 16652 16795 48 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16651;144;0&p=30&e=30&w=0&f=16652-16795", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16652-16795&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -11.2947333333 1.0 0.9375 -12.0477155555 -11.1798083333 -0.114924999967 NA 0.912111346248 0.0174377340062 NA 1.0 0.0174377340062 0.395833333333 0.535980148883 0.1875 NC_045512.2:16802-16879 - 16802 16879 26 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16801;78;0&s=-&p=30&e=30&w=0&f=16802-16879-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16802-16879&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.2970230769 1.0 0.641025641026 -17.623356 -13.6346346154 2.33761153848 NA 0.808660263715 0.0174377340062 NA 0.0174377340062 0.0174377340062 0.371794871795 0.410526315789 0.0 NC_045512.2:17854-17994 - 17854 17994 47 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17853;141;0&s=-&p=30&e=30&w=0&f=17854-17994-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17854-17994&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.303806383 1.0 0.957446808511 -11.8061977778 -13.8611319149 2.55732553189 NA 0.249438385154 0.88646915188 NA 1.0 0.249438385154 0.347517730496 0.0 0.0 NC_045512.2:16742-16795 + 16742 16795 18 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16741;54;0&p=30&e=30&w=0&f=16742-16795", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16742-16795&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -11.3072888889 1.0 0.944444444444 -11.9724235294 -6.02710555556 -5.28018333334 NA 0.912111346248 0.0174377340062 NA 0.858971186717 0.0174377340062 0.388888888889 1.0 0.0 NC_045512.2:17203-17283 - 17203 17283 27 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17202;81;0&s=-&p=30&e=30&w=0&f=17203-17283-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17203-17283&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.3116185185 1.0 1.0 -11.3116185185 -18.256037037 6.94441851854 NA 0.761784144555 1.0 NA 0.890405339411 0.761784144555 0.308641975309 1.125 0.0 NC_045512.2:14388-14444 + 14388 14444 19 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14387;57;0&p=30&e=30&w=0&f=14388-14444", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14388-14444&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -11.3185315789 1.0 0.964912280702 -11.7301145454 -15.0203 3.7017684211 NA 0.0174377340062 0.884317108904 NA 0.938137717727 0.0174377340062 0.368421052632 0.0 0.0 NC_045512.2:9235-9264 + 9235 9264 10 Maximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9234;30;0&p=30&e=30&w=0&f=9235-9264", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9235-9264&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -11.32408 1.0 1.5 -7.54938666667 -20.70222 9.37814 NA 0.756998209344 0.890405339411 NA 0.807953768517 0.564951977861 0.4 0.0 0.0 NC_045512.2:5216-5251 - 5216 5251 12 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5215;36;0&s=-&p=30&e=30&w=0&f=5216-5251-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5216-5251&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.3301833333 1.0 1.02777777778 -11.0239621621 -14.8819583333 3.55177500003 NA 0.943330620218 1.0 NA 0.094488035162 0.094488035162 0.305555555556 0.0 0.0 NC_045512.2:11988-12038 + 11988 12038 17 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;11987;51;0&p=30&e=30&w=0&f=11988-12038", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:11988-12038&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -11.3355176471 1.0 1.3137254902 -8.62852835824 -8.88462352941 -2.45089411769 NA 1.0 0.976900537197 NA 0.660413478756 0.660413478756 0.392156862745 0.0 0.0 NC_045512.2:16661-16795 + 16661 16795 45 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16660;135;0&p=30&e=30&w=0&f=16661-16795", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16661-16795&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -11.3459955556 1.0 0.948148148148 -11.9664796875 -11.2559622222 -0.0900333333778 NA 0.912111346248 0.0174377340062 NA 1.0 0.0174377340062 0.392592592593 0.581896551724 0.2 NC_045512.2:12165-12203 + 12165 12203 13 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12164;39;0&p=30&e=30&w=0&f=12165-12203", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12165-12203&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -11.3632461538 1.0 0.897435897436 -12.6619028571 -12.2999230769 0.936676923123 NA 1.0 0.408689565359 NA 0.961377177275 0.408689565359 0.333333333333 0.0 0.102564102564 NC_045512.2:3507-3536 + 3507 3536 10 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3506;30;0&p=30&e=30&w=0&f=3507-3536", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3507-3536&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -11.36698 0.9996 1.73452211447 -6.55337853878 -9.10052 -2.26646 0.0174377340062 0.094488035162 0.993911769494 0.0174377340062 0.879462803191 0.0883998046557 0.366666666667 0.0 0.0 NC_045512.2:20986-21048 - 20986 21048 21 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20985;63;0&s=-&p=30&e=30&w=0&f=20986-21048-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20986-21048&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.3684809524 1.0 1.25396825397 -9.06600379748 -18.3233285714 6.95484761903 NA 0.390053719681 0.226869607684 NA 0.951336480547 0.0174377340062 0.333333333333 0.0 0.0 NC_045512.2:27643-27729 - 27643 27729 29 NotMaximal AAG NearCognate ORF7a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27642;87;0&s=-&p=30&e=30&w=0&f=27643-27729-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27643-27729&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.3720172414 0.9962 1.70397894278 -6.67380151003 -15.069937931 3.69792068963 NA 0.789692332736 0.333954094091 NA 0.912111346248 0.0 0.344827586207 0.393665158371 0.0 NC_045512.2:7854-7886 + 7854 7886 11 Maximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7853;33;0&p=30&e=30&w=0&f=7854-7886", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7854-7886&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -11.3736272727 1.0 1.0 -11.3736272727 -8.8987 -2.4749272727 NA 0.846872863422 1.0 NA 0.578271202995 0.439423734332 0.272727272727 0.0 0.0 NC_045512.2:13868-13936 + 13868 13936 23 Maximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13867;69;0&p=30&e=30&w=0&f=13868-13936", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13868-13936&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -11.376326087 1.0 0.811594202899 -14.0172589286 -6.58321304348 -4.79311304352 NA 0.912111346248 0.912111346248 NA 0.990900211623 0.903011557871 0.275362318841 0.0 0.434782608696 NC_045512.2:16712-16795 + 16712 16795 28 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16711;84;0&p=30&e=30&w=0&f=16712-16795", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16712-16795&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -11.3962785714 1.0 1.05952380952 -10.7560382022 -9.95148571429 -1.44479285711 NA 0.912111346248 0.0174377340062 NA 0.831994139671 0.0174377340062 0.392857142857 0.617647058824 0.0 NC_045512.2:12486-12527 - 12486 12527 14 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12485;42;0&s=-&p=30&e=30&w=0&f=12486-12527-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12486-12527&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.3966214286 1.0 0.833333333333 -13.6759457143 -15.6853428571 4.28872142854 NA 0.0174377340062 1.0 NA 0.0174377340062 0.0174377340062 0.309523809524 1.0 0.642857142857 NC_045512.2:17966-18049 + 17966 18049 28 Maximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17965;84;0&p=30&e=30&w=0&f=17966-18049", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17966-18049&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -11.406275 1.0 1.17857142857 -9.67805151515 -10.4554321429 -0.950842857143 NA 0.996060556731 0.495861956699 NA 0.889975581963 0.311896467524 0.369047619048 0.352941176471 0.0 NC_045512.2:8675-8788 - 8675 8788 38 NotMaximal ACG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8674;114;0&s=-&p=30&e=30&w=0&f=8675-8788-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8675-8788&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.4068394737 1.0 1.36842105263 -8.3357673077 -18.2403631579 6.83352368419 NA 0.094488035162 0.813579684193 NA 0.885394758261 0.0894774540127 0.40350877193 0.438461538462 0.0 NC_045512.2:585-683 + 585 683 33 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;584;99;0&p=30&e=30&w=0&f=585-683", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:585-683&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -11.4073545455 1.0 1.0 -11.4073545455 -7.53895151515 -3.86840303035 NA 1.0 0.701429269087 NA 0.094488035162 0.0894774540127 0.515151515152 1.07608695652 0.646464646465 NC_045512.2:19549-19590 - 19549 19590 14 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19548;42;0&s=-&p=30&e=30&w=0&f=19549-19590-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19549-19590&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.4106785714 1.0 1.38095238095 -8.26290517239 -19.2605642857 7.84988571431 NA 0.452876444734 0.658583753866 NA 0.802539475826 0.0 0.357142857143 0.0 0.0 NC_045512.2:5379-5408 + 5379 5408 10 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5378;30;0&p=30&e=30&w=0&f=5379-5408", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5379-5408&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -11.41232 1.0 0.866666666667 -13.1680615385 -13.32386 1.91154 NA 0.0894774540127 1.0 NA 0.993661077649 0.0894774540127 0.4 0.0 0.0 NC_045512.2:14281-14331 - 14281 14331 17 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14280;51;0&s=-&p=30&e=30&w=0&f=14281-14331-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14281-14331&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.4249294118 1.0 1.0 -11.4249294118 -18.9719647059 7.54703529408 NA 0.480582777145 1.0 NA 0.990594172229 0.480582777145 0.333333333333 0.772727272727 0.0 NC_045512.2:18971-19003 + 18971 19003 11 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18970;33;0&p=30&e=30&w=0&f=18971-19003", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18971-19003&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -11.4267 1.0 1.06060606061 -10.7737457143 -12.4772363636 1.05053636364 NA 0.225990558359 0.424678495849 NA 1.0 0.225990558359 0.363636363636 0.0 0.0 NC_045512.2:24245-24346 - 24245 24346 34 NotMaximal AUU NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24244;102;0&s=-&p=30&e=30&w=0&f=24245-24346-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24245-24346&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.4299941176 1.0 1.30392156863 -8.76586015034 -20.6035382353 9.17354411769 NA 0.249246296598 0.974706169624 NA 0.786335666612 0.0174377340062 0.323529411765 0.0 0.470588235294 NC_045512.2:17854-17982 - 17854 17982 43 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17853;129;0&s=-&p=30&e=30&w=0&f=17854-17982-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17854-17982&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.4502465116 1.0 0.945736434109 -12.1072278688 -14.5079348837 3.05768837212 NA 0.249438385154 0.88646915188 NA 1.0 0.249438385154 0.341085271318 0.0 0.0 NC_045512.2:21194-21247 + 21194 21247 18 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21193;54;0&p=30&e=30&w=0&f=21194-21247", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21194-21247&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -11.4526777778 1.0 0.851851851852 -13.4444478261 -12.0779833333 0.625305555533 NA 0.756408920723 0.995031743448 NA 0.986114276412 0.737554940583 0.425925925926 0.409090909091 0.0 NC_045512.2:12168-12203 + 12168 12203 12 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12167;36;0&p=30&e=30&w=0&f=12168-12203", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12168-12203&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -11.4595916667 1.0 0.916666666667 -12.5013727273 -12.7591333333 1.29954166663 NA 1.0 0.408689565359 NA 0.343053882468 0.343053882468 0.305555555556 0.0 0.111111111111 NC_045512.2:4028-4075 - 4028 4075 16 Maximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4027;48;0&s=-&p=30&e=30&w=0&f=4028-4075-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4028-4075&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.48933125 0.9945 1.97238545032 -5.82509430302 -19.67950625 8.190175 NA 0.438704216181 0.842891095556 NA 0.094488035162 0.094488035162 0.354166666667 0.0 0.0 NC_045512.2:18618-18647 + 18618 18647 10 Maximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18617;30;0&p=30&e=30&w=0&f=18618-18647", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18618-18647&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -11.49516 1.0 0.766666666667 -14.9936869565 -15.11324 3.61808 NA 0.819065603126 0.994989418851 NA 0.706439850236 0.613394107114 0.3 0.0 0.0 NC_045512.2:701-859 - 701 859 53 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;700;159;0&s=-&p=30&e=30&w=0&f=701-859-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:701-859&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.4971811321 1.0 1.38993710692 -8.27172760183 -17.4204509434 5.9232698113 NA 1.0 0.984346410549 NA 0.706439850236 0.690786260785 0.48427672956 0.751012145749 0.358490566038 NC_045512.2:16920-16976 + 16920 16976 19 Maximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16919;57;0&p=30&e=30&w=0&f=16920-16976", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16920-16976&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -11.4986157895 1.0 0.842105263158 -13.65460625 -14.5248894737 3.02627368418 NA 0.276955884747 0.788582125997 NA 0.875041510663 0.266924955234 0.421052631579 0.0 0.456140350877 NC_045512.2:15803-15895 + 15803 15895 31 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15802;93;0&p=30&e=30&w=0&f=15803-15895", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15803-15895&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -11.5006290323 1.0 0.752688172043 -15.2794071429 -8.30489354839 -3.19573548391 NA 1.0 1.0 NA 0.787517499593 0.787517499593 0.354838709677 0.0 0.0 NC_045512.2:7487-7582 - 7487 7582 32 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7486;96;0&s=-&p=30&e=30&w=0&f=7487-7582-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7487-7582&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.501009375 1.0 1.1875 -9.68506052632 -21.708609375 10.2076 NA 0.404707797493 0.890405339411 NA 0.965271040208 0.391391828097 0.333333333333 0.8 0.0 NC_045512.2:10043-10111 - 10043 10111 23 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10042;69;0&s=-&p=30&e=30&w=0&f=10043-10111-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10043-10111&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.5058130435 1.0 0.95652173913 -12.0288045455 -11.739773913 0.233960869543 NA 0.450441152531 0.359830701612 NA 1.0 0.085388246785 0.405797101449 0.0 0.391304347826 NC_045512.2:18391-18426 - 18391 18426 12 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18390;36;0&s=-&p=30&e=30&w=0&f=18391-18426-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18391-18426&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.5111583333 1.0 1.33333333333 -8.63336874998 -14.68165 3.1704916667 NA 1.0 1.0 NA 0.63038906072 0.63038906072 0.388888888889 0.0 0.25 NC_045512.2:28612-28647 + 28612 28647 12 NotMaximal AGG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28611;36;0&p=30&e=30&w=0&f=28612-28647", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28612-28647&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -11.5127833333 1.0 0.666666666667 -17.2691749999 -6.23669166667 -5.27609166663 NA 0.943330620218 1.0 NA 0.993911769494 0.937242389712 0.583333333333 0.0 0.0 NC_045512.2:1236-1310 + 1236 1310 25 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1235;75;0&p=30&e=30&w=0&f=1236-1310", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1236-1310&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -11.529676 1.0 1.30666666667 -8.82373163265 -5.715968 -5.813708 NA 0.553683867817 0.419843724565 NA 0.659514895002 0.315077323783 0.426666666667 0.9375 0.746666666667 NC_045512.2:1239-1310 + 1239 1310 24 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1238;72;0&p=30&e=30&w=0&f=1239-1310", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1239-1310&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -11.5518041667 1.0 1.31944444444 -8.75505157897 -6.4767125 -5.0750916667 NA 0.553683867817 0.419843724565 NA 1.0 0.340371154159 0.430555555556 0.981818181818 0.736111111111 NC_045512.2:13209-13265 + 13209 13265 19 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13208;57;0&p=30&e=30&w=0&f=13209-13265", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13209-13265&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -11.5584368421 1.0 0.877192982456 -13.176618 -4.86779473684 -6.69064210526 NA 0.364759889305 1.0 NA 0.72018557708 0.364759889305 0.473684210526 0.633333333333 0.473684210526 NC_045512.2:7671-7706 + 7671 7706 12 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7670;36;0&p=30&e=30&w=0&f=7671-7706", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7671-7706&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -11.5672083333 1.0 1.05555555556 -10.9584078947 -12.7727333333 1.20552500003 NA 0.390053719681 0.855441966466 NA 0.649770470454 0.094488035162 0.388888888889 0.734693877551 0.0 NC_045512.2:14339-14374 - 14339 14374 12 Maximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14338;36;0&s=-&p=30&e=30&w=0&f=14339-14374-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14339-14374&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.567975 1.0 0.694444444444 -16.657884 -7.548475 -4.0195 NA 0.885371968094 1.0 NA 1.0 0.885371968094 0.416666666667 0.0 0.0 NC_045512.2:14366-14425 + 14366 14425 20 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14365;60;0&p=30&e=30&w=0&f=14366-14425", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14366-14425&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -11.583845 1.0 0.866666666667 -13.365975 -10.579085 -1.00476 NA 0.706439850236 1.0 NA 0.912111346248 0.706439850236 0.366666666667 0.0 0.0 NC_045512.2:9398-9454 - 9398 9454 19 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9397;57;0&s=-&p=30&e=30&w=0&f=9398-9454-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9398-9454&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.5865947368 1.0 1.14035087719 -10.1605523077 -16.1106 4.5240052632 NA 0.523005046394 0.512856910304 NA 0.472977372619 0.0 0.421052631579 0.398601398601 0.0 NC_045512.2:24245-24301 - 24245 24301 19 NotMaximal CUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24244;57;0&s=-&p=30&e=30&w=0&f=24245-24301-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24245-24301&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.5878368421 1.0 1.0 -11.5878368421 -18.0089157895 6.42107894737 NA 0.249246296598 1.0 NA 1.0 0.249246296598 0.350877192982 0.0 0.578947368421 NC_045512.2:1245-1310 + 1245 1310 22 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1244;66;0&p=30&e=30&w=0&f=1245-1310", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1245-1310&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -11.5878909091 1.0 1.34848484848 -8.59326741574 -6.04369545455 -5.54419545455 NA 0.553683867817 0.419843724565 NA 1.0 0.340371154159 0.439393939394 1.0 0.712121212121 NC_045512.2:18391-18435 - 18391 18435 15 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18390;45;0&s=-&p=30&e=30&w=0&f=18391-18435-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18391-18435&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.6044066667 1.0 1.44444444444 -8.03382000002 -17.1459466667 5.54153999997 NA 1.0 1.0 NA 0.0174377340062 0.0174377340062 0.355555555556 0.0 0.2 NC_045512.2:14093-14140 + 14093 14140 16 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14092;48;0&p=30&e=30&w=0&f=14093-14140", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14093-14140&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -11.6111375 1.0 1.16666666667 -9.95240357143 -4.45760625 -7.15353125 NA 0.546736122416 0.452648543057 NA 0.983942699007 0.452648543057 0.458333333333 0.8 0.0 NC_045512.2:17854-17979 - 17854 17979 42 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17853;126;0&s=-&p=30&e=30&w=0&f=17854-17979-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17854-17979&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.6139619048 1.0 0.968253968254 -11.994747541 -14.4646357143 2.85067380949 NA 0.249438385154 0.88646915188 NA 0.89048022139 0.249438385154 0.349206349206 0.0 0.0 NC_045512.2:21142-21246 - 21142 21246 35 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21141;105;0&s=-&p=30&e=30&w=0&f=21142-21246-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21142-21246&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.6171571429 1.0 1.30476190476 -8.90366058397 -15.9832057143 4.36604857139 NA 0.658831189972 0.282119485593 NA 0.995031743448 0.282119485593 0.428571428571 0.42 0.0 NC_045512.2:3450-3488 + 3450 3488 13 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3449;39;0&p=30&e=30&w=0&f=3450-3488", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3450-3488&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -11.6175076923 1.0 1.38461538462 -8.39042222222 -9.36887692308 -2.24863076922 0.0883998046557 0.436128927234 0.094488035162 0.0883998046557 0.526381246948 0.094488035162 0.461538461538 0.0 0.0 NC_045512.2:5690-5773 - 5690 5773 28 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5689;84;0&s=-&p=30&e=30&w=0&f=5690-5773-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5690-5773&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.6189785714 1.0 1.42857142857 -8.13328499998 -13.8463142857 2.22733571431 NA 0.44354875468 0.368347712844 NA 0.507478430734 0.333954094091 0.428571428571 0.0 0.321428571429 NC_045512.2:17203-17268 - 17203 17268 22 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17202;66;0&s=-&p=30&e=30&w=0&f=17203-17268-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17203-17268&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.6280363636 1.0 1.04545454545 -11.1224695652 -16.9274681818 5.29943181822 NA 0.761784144555 1.0 NA 0.709705355689 0.457864235715 0.333333333333 1.17857142857 0.0 NC_045512.2:425-457 - 425 457 11 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;424;33;0&s=-&p=30&e=30&w=0&f=425-457-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:425-457&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.6312454545 1.0 1.81818181818 -6.39718499997 -11.6668272727 0.0355818182273 NA 0.58996255901 0.582396223344 NA 0.706439850236 0.465918932118 0.393939393939 0.825 0.272727272727 NC_045512.2:16941-16976 + 16941 16976 12 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16940;36;0&p=30&e=30&w=0&f=16941-16976", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16941-16976&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -11.6346 1.0 0.805555555556 -14.4429517241 -15.3619166667 3.72731666667 NA 0.276955884747 0.788582125997 NA 0.387302620869 0.0174377340062 0.472222222222 0.0 0.722222222222 NC_045512.2:1233-1310 + 1233 1310 26 Maximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1232;78;0&p=30&e=30&w=0&f=1233-1310", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1233-1310&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -11.6370538462 1.0 1.30769230769 -8.89892352945 -5.68609615385 -5.95095769235 NA 0.553683867817 0.419843724565 NA 0.094488035162 0.094488035162 0.435897435897 0.886363636364 0.730769230769 NC_045512.2:9398-9445 - 9398 9445 16 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9397;48;0&s=-&p=30&e=30&w=0&f=9398-9445-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9398-9445&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.637275 1.0 1.16666666667 -9.97480714286 -15.10328125 3.46600625 NA 0.523005046394 0.512856910304 NA 0.0174377340062 0.0174377340062 0.416666666667 0.5 0.0 NC_045512.2:14304-14336 + 14304 14336 11 Maximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14303;33;0&p=30&e=30&w=0&f=14304-14336", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14304-14336&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -11.6427818182 1.0 0.969696969697 -12.00661875 -18.4103454545 6.76756363635 NA 0.994966628683 0.679098160508 NA 0.633843398991 0.613755494058 0.393939393939 0.0 0.0 NC_045512.2:29103-29144 + 29103 29144 14 NotMaximal GUG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29102;42;0&p=30&e=30&w=0&f=29103-29144", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29103-29144&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -11.6445571429 1.0 1.30952380952 -8.89220727276 -8.32472142857 -3.31983571433 NA 1.0 1.0 NA 0.683255738239 0.683255738239 0.5 0.0 0.0 NC_045512.2:701-847 - 701 847 49 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;700;147;0&s=-&p=30&e=30&w=0&f=701-847-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:701-847&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.6567938776 1.0 1.40136054422 -8.31819757285 -17.4826795918 5.82588571424 NA 1.0 0.984346410549 NA 0.989483965489 0.973830376038 0.47619047619 0.842751842752 0.387755102041 NC_045512.2:5592-5654 + 5592 5654 21 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5591;63;0&p=30&e=30&w=0&f=5592-5654", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5592-5654&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -11.6618761905 1.0 1.66666666667 -6.9971257143 -8.34306190476 -3.31881428574 0.890405339411 0.990021162299 0.890405339411 0.880426501709 1.0 0.880426501709 0.333333333333 0.583333333333 0.0 NC_045512.2:10043-10177 - 10043 10177 45 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10042;135;0&s=-&p=30&e=30&w=0&f=10043-10177-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10043-10177&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.6647577778 1.0 1.12592592593 -10.3601467105 -16.3841644444 4.71940666664 1.0 0.450441152531 0.269370014651 0.085388246785 1.0 0.085388246785 0.407407407407 0.378151260504 0.2 NC_045512.2:27643-27810 - 27643 27810 56 Maximal AUA NearCognate ORF7a,ORF7b =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27642;168;0&s=-&p=30&e=30&w=0&f=27643-27810-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27643-27810&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.6735464286 0.9914 1.37933812166 -8.46315072807 -14.0802875 2.4067410714 NA 0.789692332736 0.333954094091 NA 0.706439850236 0.0 0.333333333333 0.21875 0.14880952381 NC_045512.2:24245-24304 - 24245 24304 20 NotMaximal AUU NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24244;60;0&s=-&p=30&e=30&w=0&f=24245-24304-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24245-24304&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.682525 1.0 1.08333333333 -10.7838692308 -17.271075 5.58855 NA 0.249246296598 1.0 NA 0.802926908677 0.249246296598 0.333333333333 0.0 0.6 NC_045512.2:5217-5255 + 5217 5255 13 Maximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5216;39;0&p=30&e=30&w=0&f=5217-5255", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5217-5255&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -11.6832307692 1.0 1.0 -11.6832307692 -10.4265769231 -1.25665384612 NA 1.0 0.974706169624 NA 0.332016929839 0.332016929839 0.333333333333 0.0 0.0 NC_045512.2:16459-16500 - 16459 16500 14 Maximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16458;42;0&s=-&p=30&e=30&w=0&f=16459-16500-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16459-16500&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.6962071429 1.0 0.809523809524 -14.4482558824 -12.9954285714 1.29922142853 NA 0.706439850236 0.959160019534 NA 1.0 0.66559986977 0.380952380952 0.0 0.428571428571 NC_045512.2:27643-27801 - 27643 27801 53 NotMaximal AGG NearCognate ORF7a,ORF7b =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27642;159;0&s=-&p=30&e=30&w=0&f=27643-27801-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27643-27801&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.6993037736 0.9909 1.42596732352 -8.20446834976 -14.3167018868 2.61739811319 NA 0.789692332736 0.333954094091 NA 1.0 0.333954094091 0.333333333333 0.230434782609 0.100628930818 NC_045512.2:5837-6019 - 5837 6019 61 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5836;183;0&s=-&p=30&e=30&w=0&f=5837-6019-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5837-6019&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.7171229508 0.9957 1.28406798734 -9.1250019986 -16.8757967213 5.15867377051 NA 0.86057300993 0.317307504477 NA 0.981299039557 0.282913885724 0.322404371585 0.211805555556 0.147540983607 NC_045512.2:18391-18528 - 18391 18528 46 NotMaximal ACG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18390;138;0&s=-&p=30&e=30&w=0&f=18391-18528-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18391-18528&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.7265021739 1.0 1.34782608696 -8.70030806451 -18.1403913043 6.41388913045 NA 1.0 0.826791469966 NA 0.977317271691 0.798681426013 0.398550724638 0.368 0.0652173913043 NC_045512.2:12541-12579 + 12541 12579 13 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12540;39;0&p=30&e=30&w=0&f=12541-12579", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12541-12579&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -11.7287076923 1.0 1.25641025641 -9.33509387754 -17.9857307692 6.25702307693 NA 0.962279016767 0.600699983721 NA 0.847667263552 0.355660100928 0.435897435897 0.0 0.0 NC_045512.2:14369-14425 + 14369 14425 19 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14368;57;0&p=30&e=30&w=0&f=14369-14425", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14369-14425&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -11.7334578947 1.0 0.894736842105 -13.1138647058 -10.8481157895 -0.885342105226 NA 0.706439850236 1.0 NA 1.0 0.706439850236 0.385964912281 0.0 0.0 NC_045512.2:26041-26133 - 26041 26133 31 Maximal GUG NearCognate ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26040;93;0&s=-&p=30&e=30&w=0&f=26041-26133-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26041-26133&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.7359870968 0.9796 2.03687798154 -5.76175264457 -17.0580645161 5.32207741933 NA 0.094488035162 0.638870258831 NA 1.0 0.094488035162 0.365591397849 0.0 0.709677419355 NC_045512.2:1097-1144 - 1097 1144 16 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1096;48;0&s=-&p=30&e=30&w=0&f=1097-1144-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1097-1144&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.736475 1.0 1.14583333333 -10.2427418182 -17.29915625 5.56268125 NA 0.390053719681 0.680029301644 NA 0.094488035162 0.0174377340062 0.3125 0.0 0.875 NC_045512.2:5837-6046 - 5837 6046 70 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5836;210;0&s=-&p=30&e=30&w=0&f=5837-6046-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5837-6046&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.7410957143 0.9939 1.30337438585 -9.0082295937 -16.6355628571 4.89446714284 NA 0.86057300993 0.094488035162 NA 0.981299039557 0.0 0.333333333333 0.525 0.128571428571 NC_045512.2:8675-8785 - 8675 8785 37 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8674;111;0&s=-&p=30&e=30&w=0&f=8675-8785-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8675-8785&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.7446756757 1.0 1.38738738739 -8.46531818184 -18.7992567568 7.05458108106 NA 0.094488035162 0.813579684193 NA 1.0 0.0894774540127 0.396396396396 0.233684210526 0.0 NC_045512.2:16211-16306 - 16211 16306 32 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16210;96;0&s=-&p=30&e=30&w=0&f=16211-16306-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16211-16306&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.747125 1.0 1.07291666667 -10.948776699 -12.689809375 0.942684375 0.859137229367 0.746716587986 0.0174377340062 0.0174377340062 1.0 0.0174377340062 0.447916666667 0.415584415584 0.0 NC_045512.2:10670-10750 - 10670 10750 27 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10669;81;0&s=-&p=30&e=30&w=0&f=10670-10750-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10670-10750&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.7497444444 1.0 1.16049382716 -10.1247797872 -20.3039518519 8.55420740745 NA 0.457834934071 0.526264040371 NA 0.990900211623 0.0 0.395061728395 0.6328125 0.0 NC_045512.2:11638-11676 + 11638 11676 13 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;11637;39;0&p=30&e=30&w=0&f=11638-11676", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:11638-11676&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -11.7545923077 1.0 1.25641025641 -9.35569591837 -10.0885615385 -1.66603076924 NA 0.669109555592 1.0 NA 1.0 0.669109555592 0.384615384615 0.78 0.0 NC_045512.2:22606-22650 + 22606 22650 15 NotMaximal AUC NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22605;45;0&p=30&e=30&w=0&f=22606-22650", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22606-22650&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -11.75824 1.0 2.84444444444 -4.13375625 -27.8219533333 16.0637133333 NA 0.519348852352 0.285651961582 NA 0.448083998047 0.255018720495 0.422222222222 0.0 0.0 NC_045512.2:11389-11421 + 11389 11421 11 Maximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;11388;33;0&p=30&e=30&w=0&f=11389-11421", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:11389-11421&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -11.7652545455 1.0 1.0303030303 -11.4192176471 -12.6008636364 0.835609090864 NA 0.492915513593 1.0 NA 1.0 0.492915513593 0.393939393939 0.785714285714 0.0 NC_045512.2:3162-3203 + 3162 3203 14 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3161;42;0&p=30&e=30&w=0&f=3162-3203", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3162-3203&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -11.77175 0.9176 2.84910146092 -4.13174123894 -13.9405 2.16875 NA 0.094488035162 0.964098974442 NA 0.0174377340062 0.0 0.452380952381 0.0 0.0 NC_045512.2:23540-23584 - 23540 23584 15 NotMaximal AUA NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23539;45;0&s=-&p=30&e=30&w=0&f=23540-23584-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23540-23584&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.7719066667 1.0 1.08888888889 -10.8109346939 -22.9701866667 11.19828 NA 0.326052417386 1.0 NA 0.500514406642 0.0 0.422222222222 0.535714285714 1.0 NC_045512.2:10043-10222 - 10043 10222 60 Maximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10042;180;0&s=-&p=30&e=30&w=0&f=10043-10222-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10043-10222&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.7845683333 1.0 1.13888888889 -10.3474258536 -16.18302 4.3984516667 NA 0.450441152531 0.269370014651 NA 0.75787400293 0.085388246785 0.405555555556 0.276497695853 0.15 NC_045512.2:5837-5995 - 5837 5995 53 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5836;159;0&s=-&p=30&e=30&w=0&f=5837-5995-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5837-5995&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.7871981132 0.9979 1.27920543267 -9.21446845997 -16.1675339623 4.38033584906 NA 0.86057300993 0.317307504477 NA 0.981299039557 0.282913885724 0.314465408805 0.2544 0.169811320755 NC_045512.2:26041-26121 - 26041 26121 27 Maximal AUG Canonical ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26040;81;0&s=-&p=30&e=30&w=0&f=26041-26121-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26041-26121&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.7927185185 0.9766 2.23987225041 -5.26490674473 -19.4644925926 7.67177407409 0.432296923327 0.094488035162 0.663376200553 0.094488035162 0.706439850236 0.094488035162 0.358024691358 0.0 0.666666666667 NC_045512.2:7641-7706 + 7641 7706 22 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7640;66;0&p=30&e=30&w=0&f=7641-7706", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7641-7706&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -11.8012227273 1.0 1.12121212121 -10.5254148649 -9.52736818182 -2.27385454548 NA 0.390053719681 0.855441966466 NA 0.511362526453 0.094488035162 0.378787878788 0.458333333333 0.0 NC_045512.2:9319-9348 + 9319 9348 10 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9318;30;0&p=30&e=30&w=0&f=9319-9348", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9319-9348&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -11.80663 1.0 1.63333333333 -7.22854897959 -15.88128 4.07465 NA 0.811323457594 0.336832166694 NA 1.0 0.307657496337 0.366666666667 0.0 0.0 NC_045512.2:7487-7576 - 7487 7576 30 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7486;90;0&s=-&p=30&e=30&w=0&f=7487-7576-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7487-7576&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.80925 1.0 1.21111111111 -9.75075688073 -22.4826533333 10.6734033333 NA 0.404707797493 0.890405339411 NA 0.963206902165 0.404707797493 0.333333333333 0.861244019139 0.0 NC_045512.2:8675-8758 - 8675 8758 28 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8674;84;0&s=-&p=30&e=30&w=0&f=8675-8758-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8675-8758&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.8164142857 1.0 1.40476190476 -8.41168474575 -20.5080071429 8.69159285716 0.837287970047 0.094488035162 0.97661728797 0.0894774540127 1.0 0.0894774540127 0.380952380952 0.333333333333 0.0 NC_045512.2:18391-18543 - 18391 18543 51 Maximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18390;153;0&s=-&p=30&e=30&w=0&f=18391-18543-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18391-18543&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.8251862745 1.0 1.30718954248 -9.04626749999 -17.9594176471 6.13423137256 NA 1.0 0.826791469966 NA 1.0 0.826791469966 0.37908496732 0.365591397849 0.0588235294118 NC_045512.2:1242-1310 + 1242 1310 23 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1241;69;0&p=30&e=30&w=0&f=1242-1310", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1242-1310&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -11.8285391304 1.0 1.3768115942 -8.59125473682 -5.95860869565 -5.86993043475 NA 0.553683867817 0.419843724565 NA 0.786941233925 0.340371154159 0.449275362319 0.940909090909 0.724637681159 NC_045512.2:5837-6004 - 5837 6004 56 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5836;168;0&s=-&p=30&e=30&w=0&f=5837-6004-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5837-6004&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.8300392857 0.997 1.27133474588 -9.30521196252 -16.3936 4.5635607143 NA 0.86057300993 0.317307504477 NA 0.362204134788 0.0 0.315476190476 0.239316239316 0.160714285714 NC_045512.2:15189-15257 + 15189 15257 23 Maximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15188;69;0&p=30&e=30&w=0&f=15189-15257", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15189-15257&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -11.8301130435 1.0 0.68115942029 -17.367612766 -13.5360565217 1.70594347824 NA 0.0 0.0 NA 1.0 0.0 0.36231884058 0.0 0.246376811594 NC_045512.2:16562-16600 + 16562 16600 13 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16561;39;0&p=30&e=30&w=0&f=16562-16600", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16562-16600&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -11.8332538462 1.0 0.717948717949 -16.4820321429 -6.80614615385 -5.02710769235 NA 0.0174377340062 0.0174377340062 NA 0.0174377340062 0.0174377340062 0.384615384615 0.0 0.0 NC_045512.2:5837-6043 - 5837 6043 69 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5836;207;0&s=-&p=30&e=30&w=0&f=5837-6043-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5837-6043&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.8360130435 0.9941 1.3222638697 -8.95132455381 -16.2306289855 4.39461594201 NA 0.86057300993 0.094488035162 NA 0.462132508546 0.0 0.338164251208 0.5175 0.130434782609 NC_045512.2:701-856 - 701 856 52 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;700;156;0&s=-&p=30&e=30&w=0&f=701-856-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:701-856&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.8365653846 1.0 1.40384615385 -8.43152602739 -17.4413557692 5.60479038463 NA 1.0 0.984346410549 NA 0.811704378968 0.796050789517 0.487179487179 0.756756756757 0.365384615385 NC_045512.2:9507-9545 + 9507 9545 13 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9506;39;0&p=30&e=30&w=0&f=9507-9545", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9507-9545&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -11.8402153846 1.0 1.33333333333 -8.88016153845 -13.3291 1.4888846154 NA 0.608230506267 0.561006023116 NA 0.974706169624 0.452648543057 0.307692307692 0.0 0.564102564103 NC_045512.2:21277-21339 - 21277 21339 21 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21276;63;0&s=-&p=30&e=30&w=0&f=21277-21339-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21277-21339&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.842447619 1.0 1.71428571429 -6.90809444442 -23.8602238095 12.0177761905 NA 0.994966628683 0.965332899235 NA 0.49508383526 0.49508383526 0.365079365079 0.969230769231 0.0 NC_045512.2:13523-13564 + 13523 13564 14 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13522;42;0&p=30&e=30&w=0&f=13523-13564", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13523-13564&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -11.8427428571 1.0 0.642857142857 -18.4220444444 -5.53747142857 -6.30527142853 NA 0.0174377340062 1.0 NA 0.890405339411 0.0174377340062 0.380952380952 0.666666666667 0.928571428571 NC_045512.2:11514-11576 + 11514 11576 21 Maximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;11513;63;0&p=30&e=30&w=0&f=11514-11576", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:11514-11576&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -11.8563571429 1.0 0.761904761905 -15.5614687501 -8.0314952381 -3.8248619048 NA 0.094488035162 0.094488035162 NA 0.094488035162 0.094488035162 0.365079365079 0.0 0.888888888889 NC_045512.2:8675-8800 - 8675 8800 42 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8674;126;0&s=-&p=30&e=30&w=0&f=8675-8800-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8675-8800&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.8564142857 1.0 1.38888888889 -8.5366182857 -17.7727714286 5.91635714287 NA 0.094488035162 0.667624938955 NA 0.659908839329 0.0894774540127 0.404761904762 0.406451612903 0.0 NC_045512.2:18391-18471 - 18391 18471 27 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18390;81;0&s=-&p=30&e=30&w=0&f=18391-18471-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18391-18471&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.8622259259 1.0 1.37037037037 -8.6562189189 -15.3919037037 3.5296777778 NA 1.0 1.0 NA 0.612742959466 0.612742959466 0.407407407407 0.297794117647 0.111111111111 NC_045512.2:17203-17247 - 17203 17247 15 NotMaximal ACG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17202;45;0&s=-&p=30&e=30&w=0&f=17203-17247-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17203-17247&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.8734333333 1.0 0.933333333333 -12.7215357142 -17.95606 6.0826266667 NA 0.761784144555 1.0 NA 0.912111346248 0.57781865538 0.288888888889 1.07142857143 0.0 NC_045512.2:26041-26094 - 26041 26094 18 NotMaximal AUU NearCognate ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26040;54;0&s=-&p=30&e=30&w=0&f=26041-26094-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26041-26094&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.8759722222 1.0 1.88888888889 -6.28727941175 -21.2866 9.4106277778 NA 0.094488035162 0.663376200553 NA 0.094488035162 0.094488035162 0.37037037037 0.0 0.666666666667 NC_045512.2:26998-27081 + 26998 27081 28 Maximal GUG NearCognate M =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26997;84;0&p=30&e=30&w=0&f=26998-27081", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26998-27081&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -11.8776178571 1.0 0.738095238095 -16.0922564516 -10.7467642857 -1.13085357139 NA 1.0 0.0174377340062 NA 0.997066579847 0.0174377340062 0.452380952381 0.933333333333 0.583333333333 NC_045512.2:5837-5983 - 5837 5983 49 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5836;147;0&s=-&p=30&e=30&w=0&f=5837-5983-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5837-5983&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.8820530612 0.9993 1.26578019609 -9.38713774947 -16.0641795918 4.18212653064 NA 0.86057300993 0.317307504477 NA 0.480328829562 0.0 0.30612244898 0.290513833992 0.183673469388 NC_045512.2:3581-3628 - 3581 3628 16 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3580;48;0&s=-&p=30&e=30&w=0&f=3581-3628-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3581-3628&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.8931625 1.0 1.52083333333 -7.82016164384 -22.0898875 10.196725 NA 0.0 0.694152694123 NA 0.477942373433 0.0 0.458333333333 0.820512820513 0.0 NC_045512.2:20122-20154 - 20122 20154 11 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20121;33;0&s=-&p=30&e=30&w=0&f=20122-20154-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20122-20154&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.8992363636 1.0 0.969696969697 -12.2710875 -12.9336 1.0343636364 NA 0.640670682077 0.436916815888 NA 0.867608660264 0.252951326713 0.333333333333 1.1 0.727272727273 NC_045512.2:7487-7570 - 7487 7570 28 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7486;84;0&s=-&p=30&e=30&w=0&f=7487-7570-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7487-7570&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.9140964286 1.0 1.21428571429 -9.81160882355 -21.8879071429 9.97381071426 NA 0.404707797493 0.890405339411 NA 0.812834120137 0.33896467524 0.333333333333 0.933333333333 0.0 NC_045512.2:10226-10330 - 10226 10330 35 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10225;105;0&s=-&p=30&e=30&w=0&f=10226-10330-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10226-10330&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.9161028571 1.0 1.25714285714 -9.47871818178 -18.90482 6.9887171429 NA 0.368347712844 0.844662217158 NA 0.600361386944 0.0174377340062 0.352380952381 0.3125 0.0 NC_045512.2:11173-11214 + 11173 11214 14 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;11172;42;0&p=30&e=30&w=0&f=11173-11214", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:11173-11214&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -11.9398642857 1.0 0.928571428571 -12.8583153846 -12.6001357143 0.660271428586 NA 0.8539378154 1.0 NA 1.0 0.8539378154 0.357142857143 0.0 0.0 NC_045512.2:10552-10590 + 10552 10590 13 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10551;39;0&p=30&e=30&w=0&f=10552-10590", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10552-10590&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -11.9460769231 1.0 1.23076923077 -9.70618750002 -18.1030076923 6.15693076921 NA 0.791502523197 0.528718867003 NA 0.364759889305 0.0 0.461538461538 0.0 0.0 NC_045512.2:25288-25329 + 25288 25329 14 Maximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25287;42;0&p=30&e=30&w=0&f=25288-25329", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25288-25329&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -11.9478928571 1.0 1.59523809524 -7.48972388057 -11.5719642857 -0.375928571386 NA 0.884951977861 0.602845515221 NA 1.0 0.575686146834 0.452380952381 0.0 1.0 NC_045512.2:23540-23593 - 23540 23593 18 NotMaximal CUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23539;54;0&s=-&p=30&e=30&w=0&f=23540-23593-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23540-23593&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.9501166667 1.0 1.35185185185 -8.83981232879 -21.3697777778 9.41966111108 NA 0.326052417386 0.890405339411 NA 0.364759889305 0.0 0.444444444444 0.385714285714 1.0 NC_045512.2:19549-19578 - 19549 19578 10 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19548;30;0&s=-&p=30&e=30&w=0&f=19549-19578-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19549-19578&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.95423 1.0 1.23333333333 -9.69261891892 -18.61509 6.66086 NA 0.452876444734 0.658583753866 NA 1.0 0.0174377340062 0.433333333333 0.0 0.0 NC_045512.2:11979-12038 + 11979 12038 20 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;11978;60;0&p=30&e=30&w=0&f=11979-12038", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:11979-12038&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -11.954955 1.0 1.28333333333 -9.31554935065 -9.383085 -2.57187 NA 1.0 0.976900537197 NA 1.0 0.976900537197 0.416666666667 0.0 0.0 NC_045512.2:26041-26106 - 26041 26106 22 NotMaximal AUC NearCognate ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26040;66;0&s=-&p=30&e=30&w=0&f=26041-26106-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26041-26106&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.9591363636 1.0 1.75757575758 -6.80433620688 -20.01565 8.0565136364 NA 0.094488035162 0.663376200553 NA 0.094488035162 0.094488035162 0.333333333333 0.0 0.727272727273 NC_045512.2:10043-10216 - 10043 10216 58 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10042;174;0&s=-&p=30&e=30&w=0&f=10043-10216-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10043-10216&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.9617310345 1.0 1.11494252874 -10.7285628866 -16.5954362069 4.6337051724 NA 0.450441152531 0.269370014651 NA 1.0 0.085388246785 0.408045977011 0.28064516129 0.155172413793 NC_045512.2:701-844 - 701 844 48 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;700;144;0&s=-&p=30&e=30&w=0&f=701-844-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:701-844&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.9656479167 1.0 1.41666666667 -8.44633970591 -17.4335875 5.4679395833 NA 1.0 0.984346410549 NA 0.522220413479 0.522220413479 0.479166666667 0.848484848485 0.395833333333 NC_045512.2:19768-19866 - 19768 19866 33 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19767;99;0&s=-&p=30&e=30&w=0&f=19768-19866-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19768-19866&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.9756212121 1.0 1.32323232323 -9.05027862594 -17.5037939394 5.52817272729 NA 0.0174377340062 0.952703890607 NA 0.919781865538 0.0174377340062 0.40404040404 0.253196930946 0.0 NC_045512.2:5646-5675 - 5646 5675 10 Maximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5645;30;0&s=-&p=30&e=30&w=0&f=5646-5675-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5646-5675&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.97827 1.0 0.9 -13.3091888889 -12.75056 0.77229 NA 0.890405339411 0.890405339411 NA 1.0 0.890405339411 0.366666666667 0.0 0.633333333333 NC_045512.2:10226-10321 - 10226 10321 32 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10225;96;0&s=-&p=30&e=30&w=0&f=10226-10321-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10226-10321&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.98156875 1.0 1.23958333333 -9.66580336134 -19.611396875 7.629828125 NA 0.368347712844 0.844662217158 NA 1.0 0.343053882468 0.354166666667 0.333333333333 0.0 NC_045512.2:5837-5977 - 5837 5977 47 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5836;141;0&s=-&p=30&e=30&w=0&f=5837-5977-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5837-5977&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.9817659574 0.9999 1.29078014184 -9.28257692304 -16.7477510638 4.76598510643 NA 0.86057300993 0.317307504477 NA 0.987637961908 0.282913885724 0.312056737589 0.291925465839 0.191489361702 NC_045512.2:12713-12766 - 12713 12766 18 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12712;54;0&s=-&p=30&e=30&w=0&f=12713-12766-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12713-12766&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.9844722222 1.0 0.796296296296 -15.0502674418 -12.0701333333 0.0856611111333 NA 0.706439850236 0.933778284226 NA 0.954256877747 0.594475012209 0.481481481481 0.642857142857 0.0 NC_045512.2:27446-27484 + 27446 27484 13 NotMaximal AUC NearCognate ORF7a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27445;39;0&p=30&e=30&w=0&f=27446-27484", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27446-27484&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -11.9856461538 1.0 1.20512820513 -9.94553617017 -8.01245384615 -3.97319230765 NA 0.986729610939 0.974706169624 NA 0.68114601986 0.667875630799 0.384615384615 0.0 0.0 NC_045512.2:4386-4427 + 4386 4427 14 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4385;42;0&p=30&e=30&w=0&f=4386-4427", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4386-4427&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -11.98735 1.0 1.38095238095 -8.68049482759 -13.7973 1.80995 NA 0.706439850236 0.49007325411 NA 0.851346247762 0.225990558359 0.404761904762 1.16666666667 0.0 NC_045512.2:14475-14504 + 14475 14504 10 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14474;30;0&p=30&e=30&w=0&f=14475-14504", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14475-14504&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -11.99181 1.0 0.933333333333 -12.8483678571 -14.57629 2.58448 NA 0.979550708123 0.22944489663 NA 0.647654240599 0.0174377340062 0.433333333333 0.0 0.366666666667 NC_045512.2:18391-18429 - 18391 18429 13 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18390;39;0&s=-&p=30&e=30&w=0&f=18391-18429-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18391-18429&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.9935692308 1.0 1.5641025641 -7.66801967215 -15.0816153846 3.08804615382 NA 1.0 1.0 NA 0.636027999349 0.636027999349 0.358974358974 0.0 0.230769230769 NC_045512.2:5690-5803 - 5690 5803 38 Maximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5689;114;0&s=-&p=30&e=30&w=0&f=5690-5803-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5690-5803&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -11.9997421053 1.0 1.44736842105 -8.29073090912 -16.7926447368 4.79290263154 NA 0.44354875468 0.368347712844 NA 0.890405339411 0.333954094091 0.368421052632 0.0 0.236842105263 NC_045512.2:3165-3203 + 3165 3203 13 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3164;39;0&p=30&e=30&w=0&f=3165-3203", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3165-3203&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -12.0099230769 0.9212 2.82606954267 -4.24969127461 -13.9917153846 1.98179230772 NA 0.094488035162 0.782311574149 NA 0.333954094091 0.0 0.435897435897 0.0 0.0 NC_045512.2:701-877 - 701 877 59 Maximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;700;177;0&s=-&p=30&e=30&w=0&f=701-877-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:701-877&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.0102525424 1.0 1.45197740113 -8.2716525292 -18.1221016949 6.11184915252 NA 1.0 0.984346410549 NA 0.511076021488 0.495422432036 0.474576271186 0.702779353375 0.322033898305 NC_045512.2:23540-23617 - 23540 23617 26 NotMaximal ACG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23539;78;0&s=-&p=30&e=30&w=0&f=23540-23617-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23540-23617&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.0248884615 0.8659 1.77736111494 -6.76558542909 -17.8328461538 5.80795769235 NA 0.326052417386 0.0 NA 0.58035161973 0.0 0.487179487179 0.866666666667 0.692307692308 NC_045512.2:13913-13996 - 13913 13996 28 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13912;84;0&s=-&p=30&e=30&w=0&f=13913-13996-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13913-13996&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.0295892857 1.0 1.03571428571 -11.6147758621 -14.4843928571 2.45480357144 NA 0.997997720983 0.522116229855 NA 1.0 0.522116229855 0.392857142857 1.55555555556 0.0 NC_045512.2:5690-5779 - 5690 5779 30 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5689;90;0&s=-&p=30&e=30&w=0&f=5690-5779-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5690-5779&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.0308566667 1.0 1.44444444444 -8.32905461541 -15.0955533333 3.06469666663 0.872677844701 0.44354875468 0.368347712844 0.333954094091 1.0 0.333954094091 0.411111111111 0.0 0.3 NC_045512.2:28644-28688 + 28644 28688 15 NotMaximal GUG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28643;45;0&p=30&e=30&w=0&f=28644-28688", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28644-28688&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -12.04272 1.0 0.977777777778 -12.3164181818 -8.50871333333 -3.53400666667 NA 1.0 0.706439850236 NA 0.6943805958 0.400820446036 0.511111111111 0.357142857143 0.0 NC_045512.2:5837-5965 - 5837 5965 43 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5836;129;0&s=-&p=30&e=30&w=0&f=5837-5965-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5837-5965&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.0511325581 1.0 1.33333333333 -9.03834941858 -16.6396232558 4.58849069771 NA 0.86057300993 0.317307504477 NA 0.775910792772 0.282913885724 0.317829457364 0.307142857143 0.209302325581 NC_045512.2:10410-10442 + 10410 10442 11 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10409;33;0&p=30&e=30&w=0&f=10410-10442", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10410-10442&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -12.0513363636 1.0 0.939393939394 -12.8288419354 -11.7152090909 -0.336127272691 1.0 1.0 1.0 1.0 1.0 1.0 0.424242424242 0.0 0.0 NC_045512.2:10043-10204 - 10043 10204 54 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10042;162;0&s=-&p=30&e=30&w=0&f=10043-10204-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10043-10204&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.0641259259 1.0 1.12345679012 -10.7383978022 -15.7780611111 3.71393518521 NA 0.450441152531 0.269370014651 NA 0.934217808888 0.0 0.41975308642 0.289285714286 0.166666666667 NC_045512.2:27643-27771 - 27643 27771 43 Maximal AUG Canonical ORF7a,ORF7b =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27642;129;0&s=-&p=30&e=30&w=0&f=27643-27771-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27643-27771&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.0650581395 0.9888 1.61030080961 -7.49242505966 -14.1161790698 2.05112093027 0.094488035162 0.789692332736 0.333954094091 0.0 1.0 0.333954094091 0.341085271318 0.271578947368 0.0 NC_045512.2:16513-16584 - 16513 16584 24 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16512;72;0&s=-&p=30&e=30&w=0&f=16513-16584-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16513-16584&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.0670791667 1.0 1.08333333333 -11.1388423077 -19.058825 6.9917458333 NA 0.656496825655 1.0 NA 1.0 0.656496825655 0.319444444444 0.571428571429 0.0 NC_045512.2:13913-13963 - 13913 13963 17 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13912;51;0&s=-&p=30&e=30&w=0&f=13913-13963-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13913-13963&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.0673 1.0 1.01960784314 -11.8352365385 -17.1964 5.1291 NA 0.997997720983 1.0 NA 0.948334689891 0.946332410874 0.313725490196 1.7 0.0 NC_045512.2:26041-26127 - 26041 26127 29 NotMaximal UUG NearCognate ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26040;87;0&s=-&p=30&e=30&w=0&f=26041-26127-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26041-26127&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.0726551724 0.9782 2.1313753136 -5.66425588932 -18.6148034483 6.54214827588 NA 0.094488035162 0.663376200553 NA 1.0 0.094488035162 0.367816091954 0.0 0.689655172414 NC_045512.2:10043-10213 - 10043 10213 57 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10042;171;0&s=-&p=30&e=30&w=0&f=10043-10213-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10043-10213&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.0756140351 1.0 1.13450292398 -10.6439690722 -16.6770017544 4.60138771929 NA 0.450441152531 0.269370014651 NA 0.477942373433 0.085388246785 0.415204678363 0.275806451613 0.157894736842 NC_045512.2:2151-2180 + 2151 2180 10 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2150;30;0&p=30&e=30&w=0&f=2151-2180", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:2151-2180&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -12.08412 1.0 2.73333333333 -4.4210195122 -14.33797 2.25385 NA 0.498420966954 1.0 NA 0.094488035162 0.094488035162 0.4 0.0 0.0 NC_045512.2:17854-17898 - 17854 17898 15 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17853;45;0&s=-&p=30&e=30&w=0&f=17854-17898-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17854-17898&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.08644 1.0 0.977777777778 -12.3611318182 -10.0316466667 -2.05479333333 NA 0.249438385154 1.0 NA 1.0 0.249438385154 0.377777777778 0.0 0.0 NC_045512.2:21555-21584 - 21555 21584 10 NotMaximal AUA NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21554;30;0&s=-&p=30&e=30&w=0&f=21555-21584-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21555-21584&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.08644 0.9933 5.56945428077 -2.17013003262 -8.42832 -3.65812 NA 0.976141950187 0.924925931955 NA 0.480169298388 0.364759889305 0.233333333333 2.5 0.0 NC_045512.2:5837-5962 - 5837 5962 42 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5836;126;0&s=-&p=30&e=30&w=0&f=5837-5962-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5837-5962&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.0914666667 1.0 1.31746031746 -9.17786024099 -16.5440619048 4.45259523806 NA 0.86057300993 0.317307504477 NA 0.916623799447 0.282913885724 0.325396825397 0.3 0.214285714286 NC_045512.2:10043-10153 - 10043 10153 37 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10042;111;0&s=-&p=30&e=30&w=0&f=10043-10153-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10043-10153&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.0924540541 1.0 1.08108108108 -11.18552 -14.8619972973 2.7695432432 NA 0.450441152531 0.269370014651 NA 0.687846329155 0.085388246785 0.405405405405 0.239224137931 0.243243243243 NC_045512.2:9671-9742 - 9671 9742 24 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9670;72;0&s=-&p=30&e=30&w=0&f=9671-9742-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9671-9742&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.0982333333 1.0 1.25 -9.67858666664 -19.1989416667 7.10070833337 NA 0.094488035162 0.878287481686 NA 0.486215204298 0.0 0.291666666667 0.0 0.0 NC_045512.2:29101-29160 + 29101 29160 20 NotMaximal ACG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29100;60;0&p=30&e=30&w=0&f=29101-29160", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29101-29160&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -12.128955 1.0 1.16666666667 -10.3962471429 -11.5589 -0.570055 NA 1.0 0.887605404525 NA 0.861800423246 0.861800423246 0.466666666667 0.307692307692 0.0 NC_045512.2:14879-14932 + 14879 14932 18 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14878;54;0&p=30&e=30&w=0&f=14879-14932", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14879-14932&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -12.1341944444 1.0 0.62962962963 -19.2719558823 -6.95822222222 -5.17597222218 NA 0.385043138532 0.457834934071 NA 0.974582451571 0.385043138532 0.407407407407 0.892561983471 0.0 NC_045512.2:1394-1750 - 1394 1750 119 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1393;357;0&s=-&p=30&e=30&w=0&f=1394-1750-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1394-1750&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.1438008403 1.0 1.71148459384 -7.09547774139 -19.4194168067 7.27561596642 NA 0.0 0.0174377340062 NA 0.887273319225 0.0 0.414565826331 0.46484375 0.142857142857 NC_045512.2:2051-2098 - 2051 2098 16 Maximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2050;48;0&s=-&p=30&e=30&w=0&f=2051-2098-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:2051-2098&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.14828125 1.0 2.3125 -5.25331081081 -25.17085 13.02256875 NA 0.085388246785 0.953244343155 NA 0.706439850236 0.0 0.458333333333 0.428571428571 0.0 NC_045512.2:16211-16291 - 16211 16291 27 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16210;81;0&s=-&p=30&e=30&w=0&f=16211-16291-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16211-16291&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.1553925926 1.0 1.11111111111 -10.9398533333 -13.5621333333 1.40674074073 NA 0.746716587986 1.0 NA 1.0 0.746716587986 0.444444444444 0.250773993808 0.0 NC_045512.2:14882-14932 + 14882 14932 17 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14881;51;0&p=30&e=30&w=0&f=14882-14932", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14882-14932&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -12.1592941176 1.0 0.627450980392 -19.3788749999 -7.60772352941 -4.55157058819 NA 0.385043138532 0.457834934071 NA 1.0 0.385043138532 0.411764705882 0.927272727273 0.0 NC_045512.2:14307-14336 + 14307 14336 10 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14306;30;0&p=30&e=30&w=0&f=14307-14336", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14307-14336&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -12.16091 1.0 0.966666666667 -12.5802517241 -19.70145 7.54054 NA 0.994966628683 0.679098160508 NA 1.0 0.674064789191 0.433333333333 0.0 0.0 NC_045512.2:25142-25186 - 25142 25186 15 NotMaximal CUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25141;45;0&s=-&p=30&e=30&w=0&f=25142-25186-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25142-25186&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.1657266667 1.0 1.15555555556 -10.5280326923 -17.15484 4.9891133333 NA 1.0 0.450779749308 NA 1.0 0.450779749308 0.4 0.555555555556 0.666666666667 NC_045512.2:5837-6025 - 5837 6025 63 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5836;189;0&s=-&p=30&e=30&w=0&f=5837-6025-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5837-6025&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.1671428571 0.9953 1.34574884315 -9.04116910002 -16.6393047619 4.4721619048 NA 0.86057300993 0.094488035162 NA 0.0174377340062 0.0 0.322751322751 0.205882352941 0.142857142857 NC_045512.2:26041-26112 - 26041 26112 24 NotMaximal AGG NearCognate ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26040;72;0&s=-&p=30&e=30&w=0&f=26041-26112-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26041-26112&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.1687416667 0.9912 2.00992814085 -6.05431677847 -21.4021916667 9.23344999997 NA 0.094488035162 0.094488035162 NA 0.094488035162 0.094488035162 0.361111111111 0.0 0.666666666667 NC_045512.2:17854-17970 - 17854 17970 39 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17853;117;0&s=-&p=30&e=30&w=0&f=17854-17970-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17854-17970&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.1699230769 1.0 1.0 -12.1699230769 -15.146974359 2.97705128207 NA 0.249438385154 0.88646915188 NA 0.861946931467 0.0174377340062 0.34188034188 0.0 0.0 NC_045512.2:1321-1362 + 1321 1362 14 Maximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1320;42;0&p=30&e=30&w=0&f=1321-1362", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1321-1362&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -12.1707428571 1.0 1.14285714286 -10.6494 -21.5119857143 9.34124285719 NA 0.485196158229 0.094488035162 NA 0.694986163112 0.0 0.452380952381 0.0 0.642857142857 NC_045512.2:13889-13936 + 13889 13936 16 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13888;48;0&p=30&e=30&w=0&f=13889-13936", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13889-13936&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -12.1719375 1.0 0.895833333333 -13.5872790698 -7.2389375 -4.933 NA 0.912111346248 1.0 NA 0.994989418851 0.907100765098 0.270833333333 0.0 0.229166666667 NC_045512.2:10226-10342 - 10226 10342 39 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10225;117;0&s=-&p=30&e=30&w=0&f=10226-10342-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10226-10342&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.1771 1.0 1.26495726496 -9.62649121622 -20.6529666667 8.47586666667 NA 0.368347712844 0.844662217158 NA 0.990900211623 0.333954094091 0.367521367521 0.253246753247 0.0 NC_045512.2:10226-10339 - 10226 10339 38 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10225;114;0&s=-&p=30&e=30&w=0&f=10226-10339-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10226-10339&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.1779289474 1.0 1.28947368421 -9.44410816329 -20.3886368421 8.21070789471 NA 0.368347712844 0.844662217158 NA 0.671684844538 0.343053882468 0.359649122807 0.272727272727 0.0 NC_045512.2:25847-25879 + 25847 25879 11 NotMaximal AUU NearCognate ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25846;33;0&p=30&e=30&w=0&f=25847-25879", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25847-25879&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -12.1814090909 1.0 1.63636363636 -7.44419444444 -9.17714545455 -3.00426363635 NA 0.094488035162 1.0 NA 0.656425199414 0.094488035162 0.30303030303 1.32 0.0 NC_045512.2:20302-20346 - 20302 20346 15 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20301;45;0&s=-&p=30&e=30&w=0&f=20302-20346-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20302-20346&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.1826 1.0 1.31111111111 -9.29181355932 -17.28888 5.10628 1.0 0.863727820283 1.0 0.863727820283 1.0 0.863727820283 0.377777777778 1.28571428571 0.0 NC_045512.2:14457-14504 + 14457 14504 16 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14456;48;0&p=30&e=30&w=0&f=14457-14504", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14457-14504&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -12.184875 1.0 0.854166666667 -14.2652195122 -14.40123125 2.21635625 NA 0.979550708123 0.22944489663 NA 0.364759889305 0.0174377340062 0.395833333333 0.0 0.229166666667 NC_045512.2:8675-8806 - 8675 8806 44 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8674;132;0&s=-&p=30&e=30&w=0&f=8675-8806-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8675-8806&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.1863431818 1.0 1.42424242424 -8.55636861701 -18.4840090909 6.29766590911 NA 0.094488035162 0.667624938955 NA 0.996933094579 0.0894774540127 0.393939393939 0.405529953917 0.0 NC_045512.2:10043-10210 - 10043 10210 56 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10042;168;0&s=-&p=30&e=30&w=0&f=10043-10210-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10043-10210&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.1865892857 1.0 1.14880952381 -10.608015544 -16.4072946429 4.22070535716 NA 0.450441152531 0.269370014651 NA 0.560605567312 0.085388246785 0.422619047619 0.270967741935 0.160714285714 NC_045512.2:1065-1094 + 1065 1094 10 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1064;30;0&p=30&e=30&w=0&f=1065-1094", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1065-1094&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -12.18751 1.0 0.833333333333 -14.625012 -16.04779 3.86028 0.094488035162 0.390053719681 1.0 0.094488035162 1.0 0.390053719681 0.366666666667 0.0 0.0 NC_045512.2:519-692 - 519 692 58 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;518;174;0&s=-&p=30&e=30&w=0&f=519-692-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:519-692&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.1880017241 1.0 1.39655172414 -8.72721111108 -15.3538137931 3.165812069 0.0 0.477942373433 0.970174181996 0.0 0.706439850236 0.085388246785 0.505747126437 0.929487179487 0.574712643678 NC_045512.2:939-1025 - 939 1025 29 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;938;87;0&s=-&p=30&e=30&w=0&f=939-1025-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:939-1025&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.2006586207 1.0 1.35632183908 -8.99540084747 -10.1304862069 -2.0701724138 NA 0.556500081393 0.525808237018 NA 0.997646101253 0.368347712844 0.459770114943 0.696 0.0 NC_045512.2:7235-7264 - 7235 7264 10 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7234;30;0&s=-&p=30&e=30&w=0&f=7235-7264-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7235-7264&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.20126 1.0 1.13333333333 -10.7658176471 -10.42852 -1.77274 NA 0.421523685496 0.857287970047 NA 0.094488035162 0.094488035162 0.366666666667 0.0 0.0 NC_045512.2:16853-16891 + 16853 16891 13 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16852;39;0&p=30&e=30&w=0&f=16853-16891", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16853-16891&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -12.2060384615 1.0 0.923076923077 -13.2232083333 -11.2995615385 -0.906476923038 NA 1.0 1.0 NA 0.979550708123 0.979550708123 0.384615384615 0.696428571429 0.0 NC_045512.2:3153-3203 + 3153 3203 17 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3152;51;0&p=30&e=30&w=0&f=3153-3203", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3153-3203&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -12.2093294118 0.9322 2.62082865409 -4.65857597854 -13.8119941176 1.60266470585 NA 0.094488035162 0.964098974442 NA 0.943330620218 0.085388246785 0.470588235294 0.0 0.0 NC_045512.2:939-1016 - 939 1016 26 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;938;78;0&s=-&p=30&e=30&w=0&f=939-1016-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:939-1016&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.2120769231 1.0 1.30769230769 -9.33864705884 -10.8744923077 -1.33758461541 NA 0.556500081393 0.525808237018 NA 0.094488035162 0.094488035162 0.448717948718 0.847826086957 0.0 NC_045512.2:8240-8329 - 8240 8329 30 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8239;90;0&s=-&p=30&e=30&w=0&f=8240-8329-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8240-8329&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.2162466667 1.0 1.33333333333 -9.16218500003 -22.0192433333 9.80299666663 NA 0.813755494058 0.520800911607 NA 0.658850724402 0.481595311737 0.377777777778 0.642857142857 0.0 NC_045512.2:18880-18978 - 18880 18978 33 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18879;99;0&s=-&p=30&e=30&w=0&f=18880-18978-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18880-18978&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.2169757576 1.0 1.31313131313 -9.3036969231 -21.1591151515 8.94213939392 NA 0.355741494384 0.995754517337 NA 1.0 0.355741494384 0.40404040404 0.815934065934 0.272727272727 NC_045512.2:7691-7723 - 7691 7723 11 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7690;33;0&s=-&p=30&e=30&w=0&f=7691-7723-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7691-7723&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.2190727273 1.0 1.18181818182 -10.3392153846 -20.7820272727 8.56295454543 NA 0.368347712844 1.0 NA 1.0 0.368347712844 0.363636363636 0.0 0.0 NC_045512.2:9394-9465 + 9394 9465 24 Maximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9393;72;0&p=30&e=30&w=0&f=9394-9465", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9394-9465&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -12.2208083333 1.0 1.11111111111 -10.9987275 -15.1234166667 2.90260833337 NA 0.582972489012 1.0 NA 0.333459221879 0.094488035162 0.388888888889 0.375 0.0 NC_045512.2:18880-18981 - 18880 18981 34 Maximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18879;102;0&s=-&p=30&e=30&w=0&f=18880-18981-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18880-18981&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.2209382353 1.0 1.33333333333 -9.16570367648 -20.6947823529 8.47384411764 NA 0.355741494384 0.995754517337 NA 1.0 0.355741494384 0.411764705882 0.735576923077 0.264705882353 NC_045512.2:18391-18519 - 18391 18519 43 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18390;129;0&s=-&p=30&e=30&w=0&f=18391-18519-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18391-18519&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.2219093023 1.0 1.35658914729 -9.00929314284 -17.7260488372 5.50413953491 NA 1.0 0.826791469966 NA 0.547130066743 0.511984372456 0.387596899225 0.211822660099 0.0697674418605 NC_045512.2:20585-20632 + 20585 20632 16 Maximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20584;48;0&p=30&e=30&w=0&f=20585-20632", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20585-20632&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -12.223275 1.0 1.125 -10.8651333333 -13.6259875 1.4027125 NA 0.244076184275 0.985720332085 NA 0.961214390363 0.244076184275 0.333333333333 0.0 0.0 NC_045512.2:23864-23923 - 23864 23923 20 NotMaximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23863;60;0&s=-&p=30&e=30&w=0&f=23864-23923-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23864-23923&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.226675 1.0 2.43333333333 -5.0246609589 -25.92529 13.698615 NA 0.094488035162 0.84177437734 NA 0.706439850236 0.094488035162 0.366666666667 0.0 0.0 NC_045512.2:9110-9160 - 9110 9160 17 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9109;51;0&s=-&p=30&e=30&w=0&f=9110-9160-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9110-9160&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.2266882353 1.0 1.13725490196 -10.7510534483 -16.5633 4.3366117647 NA 0.452648543057 0.681933908514 NA 1.0 0.0174377340062 0.450980392157 0.809523809524 0.0 NC_045512.2:16064-16102 + 16064 16102 13 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16063;39;0&p=30&e=30&w=0&f=16064-16102", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16064-16102&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -12.2282307692 1.0 0.769230769231 -15.8967 -10.3818846154 -1.84634615382 NA 0.0174377340062 1.0 NA 1.0 0.0174377340062 0.333333333333 0.0 0.0 NC_045512.2:16634-16795 + 16634 16795 54 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16633;162;0&p=30&e=30&w=0&f=16634-16795", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16634-16795&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -12.2320444444 1.0 0.987654320988 -12.384945 -12.4313333333 0.199288888933 NA 0.912111346248 0.0174377340062 NA 0.872931792284 0.0 0.407407407407 0.597235023041 0.166666666667 NC_045512.2:16850-16891 + 16850 16891 14 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16849;42;0&p=30&e=30&w=0&f=16850-16891", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16850-16891&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -12.2321285714 1.0 0.952380952381 -12.843735 -10.3734357143 -1.85869285711 0.951665310109 1.0 1.0 0.951665310109 1.0 1.0 0.380952380952 0.666666666667 0.0 NC_045512.2:5837-5959 - 5837 5959 41 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5836;123;0&s=-&p=30&e=30&w=0&f=5837-5959-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5837-5959&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.2384146341 1.0 1.32520325203 -9.23512269935 -16.595102439 4.35668780492 NA 0.86057300993 0.317307504477 NA 0.0174377340062 0.0 0.333333333333 0.292857142857 0.219512195122 NC_045512.2:21179-21247 + 21179 21247 23 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21178;69;0&p=30&e=30&w=0&f=21179-21247", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21179-21247&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -12.2398304348 1.0 0.869565217391 -14.075805 -10.9936869565 -1.24614347828 NA 0.756408920723 0.995031743448 NA 1.0 0.751440664171 0.420289855072 0.331730769231 0.0 NC_045512.2:18391-18423 - 18391 18423 11 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18390;33;0&s=-&p=30&e=30&w=0&f=18391-18423-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18391-18423&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.2415454545 1.0 1.24242424242 -9.85295121948 -15.3775 3.1359545455 NA 1.0 1.0 NA 0.0174377340062 0.0174377340062 0.424242424242 0.0 0.272727272727 NC_045512.2:17747-17797 + 17747 17797 17 Maximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17746;51;0&p=30&e=30&w=0&f=17747-17797", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17747-17797&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -12.2433352941 1.0 0.862745098039 -14.1911386363 -9.84824705882 -2.39508823528 NA 0.565577079603 1.0 NA 0.985889630474 0.556477291226 0.372549019608 0.0 0.0 NC_045512.2:1394-1753 - 1394 1753 120 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1393;360;0&s=-&p=30&e=30&w=0&f=1394-1753-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1394-1753&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.2583641667 1.0 1.71388888889 -7.15236807133 -19.4808291667 7.22246499997 NA 0.0 0.0174377340062 NA 0.549695588475 0.0 0.411111111111 0.46875 0.141666666667 NC_045512.2:5837-6007 - 5837 6007 57 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5836;171;0&s=-&p=30&e=30&w=0&f=5837-6007-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5837-6007&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.2666368421 0.9968 1.29670582525 -9.45984555886 -16.533077193 4.26644035088 NA 0.86057300993 0.317307504477 NA 0.889959303272 0.282913885724 0.315789473684 0.23489010989 0.157894736842 NC_045512.2:16556-16600 + 16556 16600 15 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16555;45;0&p=30&e=30&w=0&f=16556-16600", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16556-16600&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -12.26778 1.0 0.777777777778 -15.77286 -8.14562 -4.12216 0.973905258017 0.0174377340062 0.0174377340062 0.0 1.0 0.0174377340062 0.377777777778 0.0 0.0 NC_045512.2:23562-23621 + 23562 23621 20 NotMaximal GUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23561;60;0&p=30&e=30&w=0&f=23562-23621", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23562-23621&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -12.275875 0.8207 2.11785319832 -5.79637673174 -13.14201 0.866135 NA 0.322445059417 1.0 NA 0.651082532964 0.322445059417 0.516666666667 1.00840336134 0.533333333333 NC_045512.2:6224-6304 - 6224 6304 27 Maximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6223;81;0&s=-&p=30&e=30&w=0&f=6224-6304-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6224-6304&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.2772 0.9813 1.32100027009 -9.29386638138 -18.7205222222 6.44332222222 NA 0.566576591242 0.526023115741 NA 0.948181670194 0.364759889305 0.345679012346 0.84375 0.0 NC_045512.2:10226-10357 - 10226 10357 44 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10225;132;0&s=-&p=30&e=30&w=0&f=10226-10357-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10226-10357&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.2785431818 1.0 1.19696969697 -10.2580234177 -19.4427840909 7.16424090911 NA 0.368347712844 0.844662217158 NA 0.949086765424 0.343053882468 0.363636363636 0.229166666667 0.0 NC_045512.2:8240-8323 - 8240 8323 28 NotMaximal ACG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8239;84;0&s=-&p=30&e=30&w=0&f=8240-8323-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8240-8323&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.2891 1.0 1.30952380952 -9.38440363636 -22.5907857143 10.3016857143 NA 0.813755494058 0.704766400781 NA 0.0174377340062 0.0174377340062 0.369047619048 0.717948717949 0.0 NC_045512.2:3581-3655 - 3581 3655 25 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3580;75;0&s=-&p=30&e=30&w=0&f=3581-3655-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3581-3655&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.291736 1.0 1.65333333333 -7.43451774194 -20.735532 8.443796 NA 0.0 0.094488035162 NA 0.647296109393 0.0 0.413333333333 0.63025210084 0.0 NC_045512.2:10226-10384 - 10226 10384 53 Maximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10225;159;0&s=-&p=30&e=30&w=0&f=10226-10384-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10226-10384&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.3104981132 1.0 1.18867924528 -10.3564507936 -19.2145 6.9040018868 NA 0.368347712844 0.844662217158 NA 1.0 0.343053882468 0.377358490566 0.353333333333 0.0 NC_045512.2:1272-1310 + 1272 1310 13 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1271;39;0&p=30&e=30&w=0&f=1272-1310", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1272-1310&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -12.3148769231 1.0 1.48717948718 -8.28069310346 -6.22168461538 -6.09319230772 NA 0.553683867817 0.419843724565 NA 0.094488035162 0.094488035162 0.384615384615 0.722222222222 0.769230769231 NC_045512.2:10226-10375 - 10226 10375 50 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10225;150;0&s=-&p=30&e=30&w=0&f=10226-10375-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10226-10375&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.326236 1.0 1.16666666667 -10.5653451429 -19.716634 7.390398 NA 0.368347712844 0.844662217158 NA 1.0 0.343053882468 0.36 0.411522633745 0.0 NC_045512.2:10487-10546 - 10487 10546 20 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10486;60;0&s=-&p=30&e=30&w=0&f=10487-10546-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10487-10546&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.337145 1.0 1.06666666667 -11.5660734375 -20.04211 7.704965 0.58040696728 0.697340061859 1.0 0.387341689728 1.0 0.697340061859 0.35 0.0 0.35 NC_045512.2:28899-28952 - 28899 28952 18 Maximal AUC NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28898;54;0&s=-&p=30&e=30&w=0&f=28899-28952-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28899-28952&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.3466333333 0.9951 1.24787832397 -9.89410032704 -13.7224333333 1.37580000003 NA 0.094488035162 0.477942373433 NA 0.572596451245 0.0174377340062 0.537037037037 0.272727272727 0.0 NC_045512.2:17854-18024 - 17854 18024 57 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17853;171;0&s=-&p=30&e=30&w=0&f=17854-18024-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17854-18024&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.3472947368 1.0 1.11111111111 -11.1125652631 -15.1499596491 2.80266491232 NA 0.249438385154 0.285827771447 NA 0.687813771773 0.249438385154 0.345029239766 0.197004608295 0.0 NC_045512.2:939-1028 - 939 1028 30 Maximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;938;90;0&s=-&p=30&e=30&w=0&f=939-1028-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:939-1028&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.3506966667 1.0 1.36666666667 -9.03709512198 -9.7358 -2.6148966667 NA 0.556500081393 0.525808237018 NA 1.0 0.368347712844 0.455555555556 0.675 0.0 NC_045512.2:8999-9076 - 8999 9076 26 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8998;78;0&s=-&p=30&e=30&w=0&f=8999-9076-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8999-9076&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.3525653846 1.0 1.24358974359 -9.93299072164 -19.3219576923 6.96939230771 NA 0.554810353248 0.764278040046 NA 0.758153996419 0.445215692658 0.358974358974 0.0 0.0 NC_045512.2:20986-21072 - 20986 21072 29 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20985;87;0&s=-&p=30&e=30&w=0&f=20986-21072-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20986-21072&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.3589241379 1.0 1.34482758621 -9.18996923075 -19.2951 6.9361758621 NA 0.390053719681 0.226869607684 NA 1.0 0.0174377340062 0.333333333333 0.418269230769 0.0 NC_045512.2:24245-24283 - 24245 24283 13 NotMaximal AUU NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24244;39;0&s=-&p=30&e=30&w=0&f=24245-24283-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24245-24283&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.3662923077 1.0 1.0 -12.3662923077 -15.5014307692 3.13513846153 NA 0.249246296598 1.0 NA 0.994344782679 0.249246296598 0.307692307692 0.0 0.384615384615 NC_045512.2:17854-18018 - 17854 18018 55 NotMaximal ACG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17853;165;0&s=-&p=30&e=30&w=0&f=17854-18018-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17854-18018&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.3666090909 1.0 1.04848484848 -11.7947427746 -14.1240345455 1.75742545455 NA 0.249438385154 0.285827771447 NA 0.811033696891 0.249438385154 0.345454545455 0.204714640199 0.0 NC_045512.2:20321-20353 + 20321 20353 11 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20320;33;0&p=30&e=30&w=0&f=20321-20353", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20321-20353&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -12.3675090909 1.0 1.09090909091 -11.3368833333 -6.93804545455 -5.42946363635 NA 0.573947582614 1.0 NA 0.933661077649 0.548653752238 0.30303030303 1.57142857143 0.0 NC_045512.2:11538-11576 + 11538 11576 13 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;11537;39;0&p=30&e=30&w=0&f=11538-11576", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:11538-11576&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -12.3723230769 1.0 0.871794871795 -14.1917823529 -9.82240769231 -2.54991538459 NA 0.094488035162 0.094488035162 NA 0.094488035162 0.094488035162 0.307692307692 0.0 0.820512820513 NC_045512.2:16802-16882 - 16802 16882 27 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16801;81;0&s=-&p=30&e=30&w=0&f=16802-16882-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16802-16882&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.3726925926 1.0 0.691358024691 -17.8962160714 -13.1636037037 0.790911111104 NA 0.808660263715 0.0174377340062 NA 0.909744424548 0.0174377340062 0.37037037037 0.387559808612 0.0 NC_045512.2:20302-20337 - 20302 20337 12 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20301;36;0&s=-&p=30&e=30&w=0&f=20302-20337-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20302-20337&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.3727 1.0 1.41666666667 -8.73367058824 -16.2421916667 3.86949166667 NA 0.863727820283 1.0 NA 0.972212274133 0.843278528406 0.416666666667 1.33333333333 0.0 NC_045512.2:10519-10590 + 10519 10590 24 Maximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10518;72;0&p=30&e=30&w=0&f=10519-10590", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10519-10590&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -12.3743458333 1.0 1.25 -9.89947666664 -19.5063 7.1319541667 NA 0.791502523197 0.528718867003 NA 1.0 0.49432524825 0.430555555556 0.0 0.0 NC_045512.2:13877-13936 + 13877 13936 20 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13876;60;0&p=30&e=30&w=0&f=13877-13936", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13877-13936&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -12.37877 1.0 0.8 -15.4734625 -6.586115 -5.792655 NA 0.912111346248 0.912111346248 NA 0.528201204623 0.528201204623 0.283333333333 0.0 0.383333333333 NC_045512.2:5837-6064 - 5837 6064 76 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5836;228;0&s=-&p=30&e=30&w=0&f=5837-6064-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5837-6064&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.3832026316 0.9929 1.31668470246 -9.40483519591 -16.3733973684 3.99019473682 NA 0.86057300993 0.094488035162 NA 0.094488035162 0.0 0.324561403509 0.502941176471 0.118421052632 NC_045512.2:10855-10902 + 10855 10902 16 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10854;48;0&p=30&e=30&w=0&f=10855-10902", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10855-10902&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -12.3840125 1.0 1.04166666667 -11.888652 -11.75466875 -0.62934375 NA 1.0 1.0 NA 0.085388246785 0.085388246785 0.333333333333 0.872727272727 0.0 NC_045512.2:519-725 - 519 725 69 Maximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;518;207;0&s=-&p=30&e=30&w=0&f=519-725-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:519-725&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.3886652174 1.0 1.34299516908 -9.22465359713 -15.1460971014 2.75743188405 NA 0.477942373433 0.751929024906 NA 0.0174377340062 0.0 0.507246376812 0.925484351714 0.63768115942 NC_045512.2:19667-19738 + 19667 19738 24 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19666;72;0&p=30&e=30&w=0&f=19667-19738", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19667-19738&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -12.4032833333 1.0 1.58333333333 -7.83365263156 -11.6833291667 -0.719954166633 0.94974116881 0.670844864073 0.343053882468 0.343053882468 1.0 0.343053882468 0.361111111111 0.0 0.0 NC_045512.2:7691-7813 - 7691 7813 41 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7690;123;0&s=-&p=30&e=30&w=0&f=7691-7813-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7691-7813&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.4072195122 1.0 1.58536585366 -7.8260923077 -20.8404317073 8.43321219512 0.605316620544 0.368347712844 0.795165228716 0.368347712844 1.0 0.368347712844 0.349593495935 0.267391304348 0.0 NC_045512.2:16211-16282 - 16211 16282 24 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16210;72;0&s=-&p=30&e=30&w=0&f=16211-16282-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16211-16282&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.4095166667 1.0 0.958333333333 -12.9490608696 -12.2876583333 -0.121858333367 NA 0.746716587986 1.0 NA 0.0174377340062 0.0174377340062 0.430555555556 0.3 0.0 NC_045512.2:18391-18513 - 18391 18513 41 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18390;123;0&s=-&p=30&e=30&w=0&f=18391-18513-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18391-18513&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.4149439024 1.0 1.38211382114 -8.9825770588 -16.9450341463 4.53009024394 NA 1.0 0.826791469966 NA 0.649523034348 0.561634380596 0.390243902439 0.223230490018 0.0731707317073 NC_045512.2:5837-6067 - 5837 6067 77 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5836;231;0&s=-&p=30&e=30&w=0&f=5837-6067-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5837-6067&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.4179844156 0.9927 1.34811144166 -9.21139308802 -16.4891285714 4.07114415583 NA 0.86057300993 0.094488035162 NA 0.621657170763 0.0 0.320346320346 0.509558823529 0.116883116883 NC_045512.2:20171-20260 + 20171 20260 30 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20170;90;0&p=30&e=30&w=0&f=20171-20260", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20171-20260&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -12.4232233333 1.0 1.45555555556 -8.53503893127 -11.2364133333 -1.18680999997 NA 0.364759889305 0.279524662217 NA 0.364759889305 0.0 0.322222222222 0.0 0.0 NC_045512.2:9400-9465 + 9400 9465 22 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9399;66;0&p=30&e=30&w=0&f=9400-9465", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9400-9465&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -12.4306909091 1.0 1.07575757576 -11.5552901409 -16.1048136364 3.67412272726 NA 0.582972489012 1.0 NA 0.094488035162 0.094488035162 0.378787878788 0.44 0.0 NC_045512.2:2148-2180 + 2148 2180 11 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2147;33;0&p=30&e=30&w=0&f=2148-2180", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:2148-2180&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -12.4342636364 1.0 2.66666666667 -4.66284886365 -15.6038636364 3.16959999996 NA 0.498420966954 1.0 NA 0.500172554127 0.094488035162 0.393939393939 0.0 0.0 NC_045512.2:20122-20151 - 20122 20151 10 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20121;30;0&s=-&p=30&e=30&w=0&f=20122-20151-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20122-20151&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.43568 1.0 0.933333333333 -13.3239428571 -9.74699 -2.68869 NA 0.640670682077 0.436916815888 NA 0.769418850724 0.0 0.366666666667 1.0 0.8 NC_045512.2:7934-7966 - 7934 7966 11 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7933;33;0&s=-&p=30&e=30&w=0&f=7934-7966-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7934-7966&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.4370363636 1.0 1.45454545455 -8.55046249997 -20.7721272727 8.33509090913 NA 0.094488035162 0.845818004232 NA 1.0 0.094488035162 0.424242424242 0.673469387755 0.0 NC_045512.2:29070-29111 - 29070 29111 14 Maximal CUG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29069;42;0&s=-&p=30&e=30&w=0&f=29070-29111-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29070-29111&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.43725 1.0 1.69047619048 -7.35724647887 -18.1310214286 5.69377142857 NA 0.324766400781 0.0174377340062 NA 0.706439850236 0.0 0.47619047619 0.84 0.0 NC_045512.2:17933-17995 - 17933 17995 21 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17932;63;0&s=-&p=30&e=30&w=0&f=17933-17995-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17933-17995&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.4391857143 1.0 0.761904761905 -16.32643125 -12.5693619048 0.130176190462 NA 0.890405339411 0.990900211623 NA 1.0 0.881305551034 0.380952380952 0.0 0.0 NC_045512.2:10226-10315 - 10226 10315 30 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10225;90;0&s=-&p=30&e=30&w=0&f=10226-10315-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10226-10315&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.4466733333 1.0 1.3 -9.57436410254 -20.53508 8.0884066667 NA 0.368347712844 0.844662217158 NA 0.912111346248 0.0174377340062 0.355555555556 0.352941176471 0.0 NC_045512.2:12121-12156 + 12121 12156 12 Maximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12120;36;0&p=30&e=30&w=0&f=12121-12156", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12121-12156&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -12.4554583333 1.0 1.41666666667 -8.79208823527 -19.7077583333 7.25230000003 NA 0.94613706658 1.0 NA 0.961872049487 0.908009116067 0.388888888889 0.0 0.0 NC_045512.2:10226-10351 - 10226 10351 42 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10225;126;0&s=-&p=30&e=30&w=0&f=10226-10351-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10226-10351&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.4570047619 1.0 1.22222222222 -10.1920948052 -19.6210428571 7.16403809524 NA 0.368347712844 0.844662217158 NA 0.568217483314 0.343053882468 0.373015873016 0.228260869565 0.0 NC_045512.2:21329-21361 - 21329 21361 11 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21328;33;0&s=-&p=30&e=30&w=0&f=21329-21361-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21329-21361&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.4578545455 1.0 1.09090909091 -11.4197 -11.1872909091 -1.27056363641 NA 0.468611427641 0.094488035162 NA 1.0 0.094488035162 0.30303030303 0.0 0.0 NC_045512.2:10043-10150 - 10043 10150 36 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10042;108;0&s=-&p=30&e=30&w=0&f=10043-10150-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10043-10150&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.4626666667 1.0 1.08333333333 -11.504 -14.4033805556 1.94071388886 NA 0.450441152531 0.269370014651 NA 0.390053719681 0.085388246785 0.407407407407 0.241071428571 0.25 NC_045512.2:26684-26869 + 26684 26869 62 Maximal CUG NearCognate M =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26683;186;0&p=30&e=30&w=0&f=26684-26869", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26684-26869&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -12.4641854839 1.0 0.989247311828 -12.5996657609 -14.0158903226 1.55170483868 NA 0.274540126974 0.0174377340062 NA 1.0 0.0174377340062 0.451612903226 0.635897435897 0.145161290323 NC_045512.2:3491-3547 - 3491 3547 19 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3490;57;0&s=-&p=30&e=30&w=0&f=3491-3547-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3491-3547&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.4784368421 0.9998 2.08834497253 -5.97527563992 -22.6251105263 10.1466736842 NA 0.436128927234 0.805925443594 NA 0.927133322481 0.427029138857 0.333333333333 0.0 0.0 NC_045512.2:5258-5293 - 5258 5293 12 Maximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5257;36;0&s=-&p=30&e=30&w=0&f=5258-5293-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5258-5293&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.4829166667 1.0 1.11111111111 -11.234625 -19.3254916667 6.84257499997 NA 0.90084974768 0.59260621846 NA 0.094488035162 0.094488035162 0.305555555556 0.0 0.0 NC_045512.2:21277-21333 - 21277 21333 19 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21276;57;0&s=-&p=30&e=30&w=0&f=21277-21333-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21277-21333&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.4886789474 1.0 1.82456140351 -6.84475673079 -24.7570578947 12.2683789473 0.930880677194 0.994966628683 0.965332899235 0.891180205112 1.0 0.960299527918 0.368421052632 1.05555555556 0.0 NC_045512.2:19768-19893 - 19768 19893 42 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19767;126;0&s=-&p=30&e=30&w=0&f=19768-19893-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19768-19893&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.4897642857 1.0 1.42063492063 -8.79167765362 -20.2681261905 7.77836190478 NA 0.0174377340062 0.952703890607 NA 0.0174377340062 0.0174377340062 0.404761904762 0.2 0.0 NC_045512.2:1394-1768 - 1394 1768 125 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1393;375;0&s=-&p=30&e=30&w=0&f=1394-1768-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1394-1768&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.4898376 1.0 1.75733333333 -7.10726722307 -20.1815176 7.69168 NA 0.0 0.0174377340062 NA 0.094488035162 0.0 0.405333333333 0.460930640913 0.136 NC_045512.2:13159-13281 + 13159 13281 41 Maximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13158;123;0&p=30&e=30&w=0&f=13159-13281", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13159-13281&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -12.4943902439 1.0 0.951219512195 -13.1351282051 -17.0639365854 4.56954634147 NA 1.0 0.364759889305 NA 1.0 0.364759889305 0.471544715447 0.439285714286 0.219512195122 NC_045512.2:5837-5947 - 5837 5947 37 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5836;111;0&s=-&p=30&e=30&w=0&f=5837-5947-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5837-5947&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.5030405405 1.0 1.34234234234 -9.31434563755 -17.7424135135 5.23937297301 NA 0.86057300993 0.400651147648 NA 0.292749470943 0.0 0.333333333333 0.324561403509 0.243243243243 NC_045512.2:23540-23632 - 23540 23632 31 Maximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23539;93;0&s=-&p=30&e=30&w=0&f=23540-23632-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23540-23632&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.5054451613 0.8843 2.03019591449 -6.159723341 -18.0378774194 5.53243225805 NA 0.326052417386 0.333954094091 NA 0.343053882468 0.0 0.47311827957 0.775 0.58064516129 NC_045512.2:13526-13564 + 13526 13564 13 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13525;39;0&p=30&e=30&w=0&f=13526-13564", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13526-13564&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -12.5161076923 1.0 0.666666666667 -18.7741615385 -6.26046923077 -6.25563846153 1.0 0.0174377340062 1.0 0.0174377340062 1.0 0.0174377340062 0.358974358974 0.8125 0.923076923077 NC_045512.2:21142-21252 - 21142 21252 37 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21141;111;0&s=-&p=30&e=30&w=0&f=21142-21252-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21142-21252&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.5295513514 1.0 1.33333333333 -9.39716351355 -15.6827864865 3.15323513509 NA 0.658831189972 0.282119485593 NA 0.899749308156 0.282119485593 0.423423423423 0.411111111111 0.0 NC_045512.2:18572-18613 + 18572 18613 14 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18571;42;0&p=30&e=30&w=0&f=18572-18613", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18572-18613&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -12.53135 1.0 1.09523809524 -11.4416673913 -12.6183357143 0.0869857142857 NA 0.364759889305 1.0 NA 0.306208692821 0.0174377340062 0.452380952381 0.5 0.0 NC_045512.2:9671-9721 - 9671 9721 17 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9670;51;0&s=-&p=30&e=30&w=0&f=9671-9721-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9671-9721&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.5324352941 1.0 1.07843137255 -11.6209854545 -18.3143176471 5.78188235296 0.368347712844 0.094488035162 0.878287481686 0.094488035162 1.0 0.094488035162 0.313725490196 0.0 0.0 NC_045512.2:9890-9931 - 9890 9931 14 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9889;42;0&s=-&p=30&e=30&w=0&f=9890-9931-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9890-9931&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.5342857143 1.0 1.2380952381 -10.1238461539 -19.5519142857 7.01762857141 NA 0.094488035162 0.613758749797 NA 0.507921211135 0.0174377340062 0.309523809524 0.0 0.0 NC_045512.2:13913-14008 - 13913 14008 32 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13912;96;0&s=-&p=30&e=30&w=0&f=13913-14008-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13913-14008&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.535659375 1.0 1.02083333333 -12.2798295918 -14.809221875 2.2735625 NA 0.997997720983 0.522116229855 NA 0.0174377340062 0.0174377340062 0.375 1.5 0.0 NC_045512.2:24440-24469 - 24440 24469 10 Maximal AUU NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24439;30;0&s=-&p=30&e=30&w=0&f=24440-24469-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24440-24469&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.54747 1.0 1.33333333333 -9.4106025 -24.06776 11.52029 NA 0.733358293993 0.856509848608 NA 0.919892560638 0.733358293993 0.366666666667 1.25 0.9 NC_045512.2:5216-5245 - 5216 5245 10 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5215;30;0&s=-&p=30&e=30&w=0&f=5216-5245-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5216-5245&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.5484 1.0 1.03333333333 -12.1436129032 -14.13603 1.58763 NA 0.943330620218 1.0 NA 1.0 0.943330620218 0.333333333333 0.0 0.0 NC_045512.2:17692-17748 - 17692 17748 19 Maximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17691;57;0&s=-&p=30&e=30&w=0&f=17692-17748-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17692-17748&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.5487789474 1.0 1.0701754386 -11.7259081968 -20.2417157895 7.69293684207 NA 1.0 0.890405339411 NA 0.994989418851 0.885394758261 0.438596491228 0.74025974026 0.0 NC_045512.2:8999-9070 - 8999 9070 24 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8998;72;0&s=-&p=30&e=30&w=0&f=8999-9070-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8999-9070&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.5536083333 1.0 1.27777777778 -9.82456304345 -18.3428166667 5.78920833337 NA 0.554810353248 0.764278040046 NA 0.452417385642 0.343053882468 0.361111111111 0.0 0.0 NC_045512.2:1097-1177 - 1097 1177 27 Maximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1096;81;0&s=-&p=30&e=30&w=0&f=1097-1177-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1097-1177&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.5537777778 1.0 1.30864197531 -9.59298113209 -16.2416074074 3.68782962961 NA 0.390053719681 0.496063812469 NA 0.499404199902 0.0174377340062 0.345679012346 0.421875 0.518518518519 NC_045512.2:10670-10738 - 10670 10738 23 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10669;69;0&s=-&p=30&e=30&w=0&f=10670-10738-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10670-10738&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.565026087 1.0 1.11594202899 -11.2595688312 -19.2982 6.733173913 NA 0.457834934071 0.526264040371 NA 0.974706169624 0.0174377340062 0.405797101449 0.707692307692 0.0 NC_045512.2:11923-11952 + 11923 11952 10 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;11922;30;0&p=30&e=30&w=0&f=11923-11952", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:11923-11952&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -12.56631 1.0 1.03333333333 -12.1609451613 -14.49776 1.93145 NA 0.965580335341 0.939430245808 NA 1.0 0.905010581149 0.433333333333 0.0 0.0 NC_045512.2:15800-15895 + 15800 15895 32 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15799;96;0&p=30&e=30&w=0&f=15800-15895", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15800-15895&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -12.56854375 1.0 0.802083333333 -15.6698727273 -8.49606875 -4.072475 NA 1.0 1.0 NA 0.755451733681 0.755451733681 0.34375 0.0 0.0 NC_045512.2:17692-17742 - 17692 17742 17 NotMaximal ACG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17691;51;0&s=-&p=30&e=30&w=0&f=17692-17742-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17692-17742&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.5697352941 1.0 1.01960784314 -12.3280096154 -18.6469294118 6.07719411766 NA 1.0 0.890405339411 NA 0.249246296598 0.249246296598 0.43137254902 0.842975206612 0.0 NC_045512.2:16211-16312 - 16211 16312 34 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16210;102;0&s=-&p=30&e=30&w=0&f=16211-16312-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16211-16312&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.5729941176 1.0 1.09803921569 -11.4504053571 -12.8453411765 0.272347058871 NA 0.746716587986 0.0174377340062 NA 0.261129741169 0.0174377340062 0.43137254902 0.421487603306 0.0 NC_045512.2:20122-20169 - 20122 20169 16 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20121;48;0&s=-&p=30&e=30&w=0&f=20122-20169-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20122-20169&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.57413125 1.0 1.0625 -11.8344764706 -15.34100625 2.766875 NA 0.640670682077 0.436916815888 NA 0.896386130555 0.252951326713 0.291666666667 1.06666666667 0.5 NC_045512.2:16211-16249 - 16211 16249 13 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16210;39;0&s=-&p=30&e=30&w=0&f=16211-16249-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16211-16249&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.5766692308 1.0 0.846153846154 -14.8633363637 -11.3007615385 -1.27590769234 NA 0.746716587986 1.0 NA 1.0 0.746716587986 0.512820512821 0.39 0.0 NC_045512.2:8240-8296 - 8240 8296 19 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8239;57;0&s=-&p=30&e=30&w=0&f=8240-8296-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8240-8296&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.5825 1.0 1.47368421053 -8.538125 -22.3982631579 9.81576315789 NA 0.813755494058 0.704766400781 NA 0.564893374573 0.415946605893 0.350877192982 0.575757575758 0.0 NC_045512.2:27626-27712 + 27626 27712 29 NotMaximal GUG NearCognate ORF7a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27625;87;0&p=30&e=30&w=0&f=27626-27712", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27626-27712&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -12.5860551724 1.0 1.66666666667 -7.55163310344 -10.9365275862 -1.64952758619 NA 0.706439850236 0.706439850236 NA 1.0 0.706439850236 0.390804597701 0.305263157895 0.0 NC_045512.2:16061-16102 + 16061 16102 14 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16060;42;0&p=30&e=30&w=0&f=16061-16102", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16061-16102&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -12.5891857143 1.0 0.785714285714 -16.0226 -9.04476428571 -3.54442142859 NA 0.0174377340062 1.0 NA 0.606993325737 0.0174377340062 0.333333333333 0.0 0.0 NC_045512.2:21188-21247 + 21188 21247 20 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21187;60;0&p=30&e=30&w=0&f=21188-21247", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21188-21247&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -12.591865 1.0 0.933333333333 -13.4912839286 -11.32642 -1.265445 0.87713495035 0.756408920723 0.995031743448 0.73817027511 1.0 0.751440664171 0.433333333333 0.357142857143 0.0 NC_045512.2:16513-16542 - 16513 16542 10 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16512;30;0&s=-&p=30&e=30&w=0&f=16513-16542-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16513-16542&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.59344 1.0 1.3 -9.68726153846 -21.11109 8.51765 NA 0.656496825655 1.0 NA 0.876366596126 0.638124694775 0.266666666667 2.5 0.0 NC_045512.2:25142-25189 - 25142 25189 16 Maximal AUA NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25141;48;0&s=-&p=30&e=30&w=0&f=25142-25189-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25142-25189&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.5950625 1.0 1.22916666667 -10.2468305085 -16.57966875 3.98460625 NA 1.0 0.450779749308 NA 0.444844538499 0.292677844701 0.375 0.592592592593 0.625 NC_045512.2:18675-18737 + 18675 18737 21 Maximal ACG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18674;63;0&p=30&e=30&w=0&f=18675-18737", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18675-18737&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -12.5958285714 1.0 1.2380952381 -10.1735538461 -13.383652381 0.787823809552 NA 1.0 0.703372944815 NA 0.891014162461 0.519407455641 0.444444444444 0.336898395722 0.0 NC_045512.2:902-973 - 902 973 24 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;901;72;0&s=-&p=30&e=30&w=0&f=902-973-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:902-973&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.5976125 1.0 1.36111111111 -9.25538877551 -16.5260125 3.9284 1.0 0.0894774540127 0.884317108904 0.0174377340062 1.0 0.0174377340062 0.458333333333 0.533333333333 0.0 NC_045512.2:6551-6598 - 6551 6598 16 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6550;48;0&s=-&p=30&e=30&w=0&f=6551-6598-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6551-6598&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.60550625 0.9975 1.29325982493 -9.74707943985 -20.31095 7.70544375 NA 0.412316457757 0.962344131532 NA 0.96079440013 0.353905258017 0.3125 0.0 0.5 NC_045512.2:14108-14149 - 14108 14149 14 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14107;42;0&s=-&p=30&e=30&w=0&f=14108-14149-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14108-14149&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.6078 1.0 1.02380952381 -12.3145953488 -8.55222142857 -4.05557857143 NA 0.364759889305 0.355660100928 NA 1.0 0.355660100928 0.452380952381 0.466666666667 0.0 NC_045512.2:9110-9154 - 9110 9154 15 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9109;45;0&s=-&p=30&e=30&w=0&f=9110-9154-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9110-9154&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.6078933333 1.0 1.24444444444 -10.1313428571 -17.0874 4.4795066667 NA 0.452648543057 0.681933908514 NA 1.0 0.0174377340062 0.466666666667 0.833333333333 0.0 NC_045512.2:3581-3670 - 3581 3670 30 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3580;90;0&s=-&p=30&e=30&w=0&f=3581-3670-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3581-3670&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.60935 1.0 1.63333333333 -7.72001020408 -22.0303 9.42095 NA 0.0 0.094488035162 NA 1.0 0.0 0.4 0.557275541796 0.0 NC_045512.2:6398-6451 - 6398 6451 18 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6397;54;0&s=-&p=30&e=30&w=0&f=6398-6451-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6398-6451&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.61265 0.9813 1.01905735121 -12.3767813313 -2.72435555556 -9.88829444444 NA 0.094488035162 0.943555266157 NA 0.094488035162 0.094488035162 0.388888888889 0.490909090909 1.0 NC_045512.2:17854-17907 - 17854 17907 18 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17853;54;0&s=-&p=30&e=30&w=0&f=17854-17907-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17854-17907&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.6269222222 1.0 1.0 -12.6269222222 -12.0071777778 -0.619744444422 NA 0.249438385154 0.912111346248 NA 0.986729610939 0.249438385154 0.351851851852 0.0 0.0 NC_045512.2:17203-17253 - 17203 17253 17 NotMaximal ACG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17202;51;0&s=-&p=30&e=30&w=0&f=17203-17253-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17203-17253&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.6316470588 1.0 1.0 -12.6316470588 -18.7911529412 6.15950588238 NA 0.761784144555 1.0 NA 0.592974116881 0.25216343806 0.333333333333 1.41666666667 0.0 NC_045512.2:1394-1789 - 1394 1789 132 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1393;396;0&s=-&p=30&e=30&w=0&f=1394-1789-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1394-1789&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.6381431818 1.0 1.7297979798 -7.30613824816 -20.2509719697 7.6128287879 NA 0.0 0.0174377340062 NA 0.423757121927 0.0 0.401515151515 0.446376811594 0.128787878788 NC_045512.2:28101-28130 - 28101 28130 10 Maximal AUA NearCognate ORF8 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28100;30;0&s=-&p=30&e=30&w=0&f=28101-28130-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28101-28130&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.64412 0.7064 6.60589385651 -1.91406647982 -21.27975 8.63563 NA 0.368904444083 1.0 NA 0.435780563243 0.343610613707 0.366666666667 2.14285714286 0.0 NC_045512.2:12141-12203 + 12141 12203 21 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12140;63;0&p=30&e=30&w=0&f=12141-12203", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12141-12203&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -12.6475095238 1.0 1.06349206349 -11.8924343283 -8.6956952381 -3.9518142857 NA 1.0 0.408689565359 NA 0.758870258831 0.215624287807 0.396825396825 0.0 0.0634920634921 NC_045512.2:6867-6896 + 6867 6896 10 Maximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6866;30;0&p=30&e=30&w=0&f=6867-6896", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6867-6896&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -12.64936 1.0 1.8 -7.02742222222 -21.48702 8.83766 NA 0.368347712844 0.653260621846 NA 1.0 0.094488035162 0.333333333333 1.42857142857 0.466666666667 NC_045512.2:5610-5654 + 5610 5654 15 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5609;45;0&p=30&e=30&w=0&f=5610-5654", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5610-5654&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -12.6509066667 1.0 1.75555555556 -7.20621265825 -10.6968933333 -1.95401333337 NA 0.990021162299 0.890405339411 NA 1.0 0.880426501709 0.377777777778 0.625 0.0 NC_045512.2:18623-18685 - 18623 18685 21 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18622;63;0&s=-&p=30&e=30&w=0&f=18623-18685-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18623-18685&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.6569047619 1.0 1.15873015873 -10.9230821918 -11.3736761905 -1.28322857142 0.0174377340062 0.0174377340062 0.0174377340062 0.0174377340062 1.0 0.0174377340062 0.428571428571 0.715909090909 0.0 NC_045512.2:8675-8866 - 8675 8866 64 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8674;192;0&s=-&p=30&e=30&w=0&f=8675-8866-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8675-8866&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.6609359375 1.0 1.484375 -8.52947263158 -19.7200265625 7.059090625 NA 0.094488035162 0.667624938955 NA 0.974706169624 0.0174377340062 0.416666666667 0.371373307544 0.0 NC_045512.2:16616-16795 + 16616 16795 60 Maximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16615;180;0&p=30&e=30&w=0&f=16616-16795", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16616-16795&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -12.6684533333 1.0 1.04444444444 -12.1293702127 -13.5753733333 0.906920000033 NA 0.912111346248 0.0174377340062 NA 0.842142275761 0.0174377340062 0.405555555556 0.541353383459 0.15 NC_045512.2:7691-7795 - 7691 7795 35 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7690;105;0&s=-&p=30&e=30&w=0&f=7691-7795-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7691-7795&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.6702085714 1.0 1.6380952381 -7.73472034882 -22.3232485714 9.65304000003 NA 0.368347712844 0.795165228716 NA 0.912111346248 0.094488035162 0.361904761905 0.294117647059 0.0 NC_045512.2:3441-3488 + 3441 3488 16 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3440;48;0&p=30&e=30&w=0&f=3441-3488", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3441-3488&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -12.67125625 1.0 1.29166666667 -9.81000483871 -8.78735 -3.88390625 0.969282109718 0.436128927234 0.094488035162 0.085388246785 1.0 0.094488035162 0.479166666667 0.0 0.0 NC_045512.2:17122-17181 - 17122 17181 20 Maximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17121;60;0&s=-&p=30&e=30&w=0&f=17122-17181-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17122-17181&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.676865 1.0 1.01666666667 -12.469047541 -17.394735 4.71787 NA 0.0174377340062 0.895116392642 NA 1.0 0.0174377340062 0.5 0.574162679426 0.0 NC_045512.2:18391-18465 - 18391 18465 25 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18390;75;0&s=-&p=30&e=30&w=0&f=18391-18465-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18391-18465&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.680592 1.0 1.32 -9.60650909091 -16.05764 3.377048 NA 1.0 1.0 NA 0.53419501872 0.53419501872 0.4 0.339366515837 0.12 NC_045512.2:27617-27712 + 27617 27712 32 NotMaximal AUC NearCognate ORF7a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27616;96;0&p=30&e=30&w=0&f=27617-27712", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27617-27712&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -12.68060625 1.0 1.65625 -7.65621509434 -10.647790625 -2.032815625 NA 0.706439850236 0.706439850236 NA 0.880478593521 0.674807097509 0.385416666667 0.571428571429 0.0 NC_045512.2:11982-12038 + 11982 12038 19 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;11981;57;0&p=30&e=30&w=0&f=11982-12038", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:11982-12038&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -12.6841631579 1.0 1.35087719298 -9.38957532468 -9.38453157895 -3.29963157895 NA 1.0 0.976900537197 NA 0.978368875142 0.955269412339 0.40350877193 0.0 0.0 NC_045512.2:5837-6082 - 5837 6082 82 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5836;246;0&s=-&p=30&e=30&w=0&f=5837-6082-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5837-6082&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.7033743902 0.992 1.36532975387 -9.30425368242 -17.4852256098 4.78185121956 NA 0.86057300993 0.094488035162 NA 0.981299039557 0.0 0.317073170732 0.488095238095 0.109756097561 NC_045512.2:16211-16321 - 16211 16321 37 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16210;111;0&s=-&p=30&e=30&w=0&f=16211-16321-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16211-16321&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.7094459459 1.0 1.12612612613 -11.285988 -12.7576459459 0.0482000000459 NA 0.746716587986 0.0174377340062 NA 0.0174377340062 0.0174377340062 0.414414414414 0.420454545455 0.0 NC_045512.2:6551-6595 - 6551 6595 15 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6550;45;0&s=-&p=30&e=30&w=0&f=6551-6595-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6551-6595&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.7181933333 0.9974 1.33503270215 -9.52650321809 -19.2032466667 6.48505333337 NA 0.412316457757 0.962344131532 NA 0.861852515058 0.387022627381 0.333333333333 0.0 0.466666666667 NC_045512.2:3581-3658 - 3581 3658 26 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3580;78;0&s=-&p=30&e=30&w=0&f=3581-3658-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3581-3658&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.7183923077 1.0 1.65384615385 -7.69019069768 -22.3328038462 9.61441153845 NA 0.0 0.094488035162 NA 0.85132996907 0.0 0.410256410256 0.619047619048 0.0 NC_045512.2:5837-6085 - 5837 6085 83 Maximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5836;249;0&s=-&p=30&e=30&w=0&f=5837-6085-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5837-6085&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.7231855422 0.9919 1.41026899486 -9.02181469531 -17.1204253012 4.397239759 NA 0.86057300993 0.094488035162 NA 0.439410711379 0.0 0.317269076305 0.480694980695 0.10843373494 NC_045512.2:27835-27900 - 27835 27900 22 Maximal AUU NearCognate ORF7b,ORF8 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27834;66;0&s=-&p=30&e=30&w=0&f=27835-27900-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27835-27900&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.7234136364 0.871 1.41242143114 -9.00822754162 -12.0030863636 -0.720327272764 NA 1.0 0.694077812144 NA 0.265632427153 0.265632427153 0.363636363636 0.942857142857 0.106060606061 NC_045512.2:28641-28688 + 28641 28688 16 Maximal AUG Canonical N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28640;48;0&p=30&e=30&w=0&f=28641-28688", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28641-28688&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -12.724675 1.0 1.0 -12.724675 -8.58094375 -4.14373125 0.730206739378 1.0 0.706439850236 0.436646589614 1.0 0.706439850236 0.5 0.355555555556 0.0 NC_045512.2:6518-6547 - 6518 6547 10 Maximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6517;30;0&s=-&p=30&e=30&w=0&f=6518-6547-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6518-6547&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.72958 0.9813 1.49461744845 -8.51694860998 -12.76421 0.03463 NA 0.380953931304 0.681045091975 NA 0.945443594335 0.355660100928 0.4 0.0 0.0 NC_045512.2:16802-16885 - 16802 16885 28 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16801;84;0&s=-&p=30&e=30&w=0&f=16802-16885-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16802-16885&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.7330571429 1.0 0.714285714286 -17.8262800001 -13.4829178571 0.749860714243 NA 0.808660263715 0.0174377340062 NA 1.0 0.0174377340062 0.369047619048 0.368421052632 0.0 NC_045512.2:17864-17908 + 17864 17908 15 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17863;45;0&p=30&e=30&w=0&f=17864-17908", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17864-17908&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -12.74498 1.0 1.04444444444 -12.2026404255 -14.48262 1.73764 0.834878723751 0.309809539313 1.0 0.309809539313 1.0 0.309809539313 0.377777777778 0.0 0.0 NC_045512.2:20174-20260 + 20174 20260 29 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20173;87;0&p=30&e=30&w=0&f=20174-20260", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20174-20260&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -12.7513689655 1.0 1.45977011494 -8.73518976377 -11.312262069 -1.43910689653 NA 0.364759889305 0.279524662217 NA 0.452648543057 0.0 0.310344827586 0.0 0.0 NC_045512.2:16367-16414 + 16367 16414 16 Maximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16366;48;0&p=30&e=30&w=0&f=16367-16414", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16367-16414&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -12.75179375 1.0 0.916666666667 -13.9110477273 -8.2082625 -4.54353125 NA 0.987712843887 0.993911769494 NA 0.912111346248 0.893735959629 0.4375 0.444444444444 0.479166666667 NC_045512.2:7691-7804 - 7691 7804 38 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7690;114;0&s=-&p=30&e=30&w=0&f=7691-7804-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7691-7804&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.7542578947 1.0 1.65789473684 -7.69304444442 -22.3157842105 9.56152631583 NA 0.368347712844 0.795165228716 NA 0.925111509035 0.368347712844 0.350877192982 0.287878787879 0.0 NC_045512.2:13913-14014 - 13913 14014 34 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13912;102;0&s=-&p=30&e=30&w=0&f=13913-14014-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13913-14014&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.7543852941 1.0 1.00980392157 -12.6305563107 -14.4075323529 1.65314705884 NA 0.997997720983 0.522116229855 NA 0.912111346248 0.33815074068 0.362745098039 1.5 0.0 NC_045512.2:14858-14932 + 14858 14932 25 Maximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14857;75;0&p=30&e=30&w=0&f=14858-14932", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14858-14932&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -12.76056 1.0 0.733333333333 -17.4007636364 -7.766692 -4.993868 NA 0.385043138532 0.457834934071 NA 0.984346410549 0.385043138532 0.373333333333 0.78125 0.0 NC_045512.2:16211-16276 - 16211 16276 22 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16210;66;0&s=-&p=30&e=30&w=0&f=16211-16276-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16211-16276&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.7675590909 1.0 0.969696969697 -13.1665453125 -12.8052409091 0.0376818181909 0.0174377340062 0.746716587986 1.0 0.0174377340062 0.966882630636 0.713599218623 0.454545454545 0.294642857143 0.0 NC_045512.2:5690-5761 - 5690 5761 24 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5689;72;0&s=-&p=30&e=30&w=0&f=5690-5761-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5690-5761&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.770875 1.0 1.54166666667 -8.28381081081 -15.6599 2.889025 NA 0.44354875468 0.368347712844 NA 1.0 0.333954094091 0.430555555556 0.0 0.25 NC_045512.2:10043-10135 - 10043 10135 31 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10042;93;0&s=-&p=30&e=30&w=0&f=10043-10135-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10043-10135&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.7709870968 1.0 0.989247311828 -12.9098021739 -13.7684903226 0.997503225781 NA 0.450441152531 0.283649682566 NA 0.808770958815 0.085388246785 0.397849462366 0.0 0.290322580645 NC_045512.2:17854-18006 - 17854 18006 51 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17853;153;0&s=-&p=30&e=30&w=0&f=17854-18006-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17854-18006&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.771772549 1.0 1.00653594771 -12.688838961 -14.785572549 2.01380000002 NA 0.249438385154 0.285827771447 NA 0.0174377340062 0.0174377340062 0.339869281046 0.0 0.0 NC_045512.2:10043-10144 - 10043 10144 34 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10042;102;0&s=-&p=30&e=30&w=0&f=10043-10144-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10043-10144&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.7790264706 1.0 1.04901960784 -12.1818757009 -15.1211911765 2.34216470587 NA 0.450441152531 0.283649682566 NA 0.094488035162 0.085388246785 0.401960784314 0.261538461538 0.264705882353 NC_045512.2:12537-12569 + 12537 12569 11 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12536;33;0&p=30&e=30&w=0&f=12537-12569", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12537-12569&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -12.7821818182 1.0 1.15151515152 -11.1003157895 -13.1195909091 0.337409090891 0.952055998698 0.307139833957 1.0 0.307139833957 1.0 0.307139833957 0.454545454545 0.0 0.0 NC_045512.2:14411-14470 - 14411 14470 20 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14410;60;0&s=-&p=30&e=30&w=0&f=14411-14470-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14411-14470&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.78588 1.0 0.733333333333 -17.4352909091 -10.394505 -2.391375 NA 0.891134624776 0.884317108904 NA 1.0 0.679374898258 0.333333333333 0.0 0.0 NC_045512.2:2406-2462 + 2406 2462 19 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2405;57;0&p=30&e=30&w=0&f=2406-2462", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:2406-2462&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -12.7991684211 1.0 1.98245614035 -6.45621769914 -15.3181789474 2.51901052627 NA 0.476714960117 0.912111346248 NA 0.656327527267 0.292749470943 0.438596491228 0.0 0.0 NC_045512.2:8934-8963 - 8934 8963 10 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8933;30;0&s=-&p=30&e=30&w=0&f=8934-8963-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8934-8963&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.80446 1.0 1.03333333333 -12.3914129032 -15.77845 2.97399 0.605056161485 1.0 1.0 0.605056161485 1.0 1.0 0.433333333333 0.0 0.0 NC_045512.2:11970-12038 + 11970 12038 23 Maximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;11969;69;0&p=30&e=30&w=0&f=11970-12038", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:11970-12038&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -12.8082217391 1.0 1.28985507246 -9.9299696629 -9.26827391304 -3.53994782606 NA 1.0 0.976900537197 NA 1.0 0.976900537197 0.391304347826 0.0 0.0 NC_045512.2:16802-16948 - 16802 16948 49 Maximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16801;147;0&s=-&p=30&e=30&w=0&f=16802-16948-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16802-16948&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.8111183673 1.0 0.829931972789 -15.4363475409 -14.7549755102 1.9438571429 NA 0.808660263715 0.0174377340062 NA 0.890405339411 0.0174377340062 0.353741496599 0.222727272727 0.0 NC_045512.2:18684-18737 + 18684 18737 18 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18683;54;0&p=30&e=30&w=0&f=18684-18737", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18684-18737&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -12.8149444444 1.0 1.18518518519 -10.812609375 -12.6955444444 -0.119399999956 0.0174377340062 1.0 0.703372944815 0.0174377340062 1.0 0.703372944815 0.407407407407 0.0 0.0 NC_045512.2:17410-17442 - 17410 17442 11 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17409;33;0&s=-&p=30&e=30&w=0&f=17410-17442-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17410-17442&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.8167818182 1.0 1.57575757576 -8.13372692309 -24.0826818182 11.2659 NA 0.680862770633 1.0 NA 0.757287970047 0.451421129741 0.515151515152 0.916666666667 0.0 NC_045512.2:24374-24433 - 24374 24433 20 Maximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24373;60;0&s=-&p=30&e=30&w=0&f=24374-24433-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24374-24433&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.826855 1.0 1.88333333333 -6.81071946903 -22.11927 9.292415 NA 0.653986651473 0.415520104184 NA 0.706439850236 0.390226273808 0.416666666667 0.0 0.65 NC_045512.2:5607-5654 + 5607 5654 16 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5606;48;0&p=30&e=30&w=0&f=5607-5654", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5607-5654&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -12.828325 1.0 1.79166666667 -7.15999534884 -9.881875 -2.94645 NA 0.990021162299 0.890405339411 NA 0.094488035162 0.0894774540127 0.375 0.6 0.0 NC_045512.2:13895-13936 + 13895 13936 14 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13894;42;0&p=30&e=30&w=0&f=13895-13936", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13895-13936&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -12.8408785714 1.0 0.97619047619 -13.1540707317 -7.45922142857 -5.38165714283 NA 0.912111346248 1.0 NA 1.0 0.912111346248 0.285714285714 0.0 0.119047619048 NC_045512.2:17854-17955 - 17854 17955 34 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17853;102;0&s=-&p=30&e=30&w=0&f=17854-17955-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17854-17955&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.8507029412 1.0 1.06862745098 -12.0254284404 -15.1337352941 2.28303235292 NA 0.249438385154 0.88646915188 NA 0.0174377340062 0.0174377340062 0.343137254902 0.0 0.0 NC_045512.2:9990-10025 - 9990 10025 12 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9989;36;0&s=-&p=30&e=30&w=0&f=9990-10025-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9990-10025&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.8521166667 1.0 1.33333333333 -9.63908750003 -21.0383583333 8.18624166663 NA 1.0 1.0 NA 0.975494058278 0.975494058278 0.444444444444 0.0 0.0 NC_045512.2:13712-13756 + 13712 13756 15 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13711;45;0&p=30&e=30&w=0&f=13712-13756", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13712-13756&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -12.8604933333 1.0 1.08888888889 -11.8106571428 -7.26728666667 -5.59320666663 NA 0.948510499756 1.0 NA 0.969483965489 0.917994465245 0.355555555556 0.0 0.355555555556 NC_045512.2:1346-1390 - 1346 1390 15 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1345;45;0&s=-&p=30&e=30&w=0&f=1346-1390-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1346-1390&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.8624733333 1.0 1.66666666667 -7.71748399998 -16.9279333333 4.06546000003 NA 0.912111346248 1.0 NA 0.454152694123 0.454152694123 0.355555555556 0.0 0.333333333333 NC_045512.2:11577-11639 - 11577 11639 21 Maximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;11576;63;0&s=-&p=30&e=30&w=0&f=11577-11639-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:11577-11639&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.8681 1.0 0.984126984127 -13.07565 -11.0922952381 -1.7758047619 NA 1.0 0.094488035162 NA 0.094488035162 0.094488035162 0.285714285714 0.0 0.0 NC_045512.2:19627-19755 - 19627 19755 43 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19626;129;0&s=-&p=30&e=30&w=0&f=19627-19755-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19627-19755&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.8747465116 1.0 1.67441860465 -7.68908472221 -17.1811744186 4.306427907 NA 1.0 0.985889630474 NA 0.6652873189 0.651176949373 0.325581395349 0.0 0.0 NC_045512.2:3150-3203 + 3150 3203 18 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3149;54;0&p=30&e=30&w=0&f=3150-3203", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3150-3203&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -12.8791111111 0.9359 2.49374558071 -5.16456498638 -13.2666944444 0.387583333344 NA 0.094488035162 0.964098974442 NA 0.912111346248 0.085388246785 0.462962962963 0.0 0.0 NC_045512.2:8675-8875 - 8675 8875 67 Maximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8674;201;0&s=-&p=30&e=30&w=0&f=8675-8875-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8675-8875&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.8853402985 1.0 1.51741293532 -8.4916504918 -19.5870761194 6.7017358209 NA 0.094488035162 0.364759889305 NA 0.832462965978 0.0174377340062 0.422885572139 0.344571428571 0.0 NC_045512.2:10670-10735 - 10670 10735 22 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10669;66;0&s=-&p=30&e=30&w=0&f=10670-10735-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10670-10735&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.8892454545 1.0 1.15151515152 -11.1932921052 -19.1843136364 6.29506818186 NA 0.457834934071 0.526264040371 NA 0.0174377340062 0.0174377340062 0.424242424242 0.676923076923 0.0 NC_045512.2:16027-16086 - 16027 16086 20 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16026;60;0&s=-&p=30&e=30&w=0&f=16027-16086-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16027-16086&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.89619 1.0 1.21666666667 -10.5996082192 -21.585705 8.689515 0.719850236041 0.845205925444 1.0 0.614634543383 1.0 0.845205925444 0.383333333333 0.0 0.0 NC_045512.2:27088-27138 + 27088 27138 17 Maximal GUG NearCognate M =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27087;51;0&p=30&e=30&w=0&f=27088-27138", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27088-27138&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -12.8973764706 1.0 1.01960784314 -12.64935 -4.86768823529 -8.02968823531 NA 1.0 1.0 NA 0.978368875142 0.978368875142 0.43137254902 0.425 0.627450980392 NC_045512.2:20162-20260 + 20162 20260 33 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20161;99;0&p=30&e=30&w=0&f=20162-20260", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20162-20260&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -12.9076757576 1.0 1.44444444444 -8.9360832168 -10.9519242424 -1.95575151518 NA 0.364759889305 0.255018720495 NA 1.0 0.0 0.323232323232 0.0 0.0 NC_045512.2:26711-26869 + 26711 26869 53 NotMaximal UUG NearCognate M =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26710;159;0&p=30&e=30&w=0&f=26711-26869", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26711-26869&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -12.9154811321 1.0 0.974842767296 -13.248783871 -14.516890566 1.60140943394 NA 0.274540126974 0.0174377340062 NA 1.0 0.0174377340062 0.446540880503 0.760765550239 0.169811320755 NC_045512.2:7326-7364 + 7326 7364 13 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7325;39;0&p=30&e=30&w=0&f=7326-7364", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7326-7364&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -12.9239384615 1.0 0.871794871795 -14.824517647 -12.1519 -0.7720384615 NA 0.390053719681 0.912111346248 NA 0.890405339411 0.094488035162 0.307692307692 0.0 0.512820512821 NC_045512.2:12135-12203 + 12135 12203 23 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12134;69;0&p=30&e=30&w=0&f=12135-12203", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12135-12203&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -12.9271173913 1.0 1.07246376812 -12.0536635135 -10.1159695652 -2.81114782608 NA 1.0 0.408689565359 NA 1.0 0.408689565359 0.391304347826 0.0 0.0579710144928 NC_045512.2:3581-3676 - 3581 3676 32 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3580;96;0&s=-&p=30&e=30&w=0&f=3581-3676-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3581-3676&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.930240625 1.0 1.67708333333 -7.70995714286 -20.81773125 7.887490625 NA 0.0 0.094488035162 NA 0.805183135276 0.0 0.385416666667 0.561403508772 0.0 NC_045512.2:14861-14932 + 14861 14932 24 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14860;72;0&p=30&e=30&w=0&f=14861-14932", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14861-14932&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -12.95125 1.0 0.75 -17.2683333333 -7.68534583333 -5.26590416667 NA 0.385043138532 0.457834934071 NA 1.0 0.385043138532 0.375 0.8 0.0 NC_045512.2:24509-24595 - 24509 24595 29 Maximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24508;87;0&s=-&p=30&e=30&w=0&f=24509-24595-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24509-24595&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.9521310345 1.0 1.62068965517 -7.99174042554 -22.5433482759 9.59121724136 NA 0.590024418037 0.226869607684 NA 1.0 0.0174377340062 0.413793103448 0.27619047619 0.310344827586 NC_045512.2:12124-12156 + 12124 12156 11 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12123;33;0&p=30&e=30&w=0&f=12124-12156", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12124-12156&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -12.9586545455 1.0 1.48484848485 -8.72725714289 -20.4136545455 7.45499999995 NA 0.94613706658 1.0 NA 0.68075858701 0.626895653589 0.393939393939 0.0 0.0 NC_045512.2:7433-7462 - 7433 7462 10 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7432;30;0&s=-&p=30&e=30&w=0&f=7433-7462-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7433-7462&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.95921 1.0 1.36666666667 -9.48234878049 -21.65463 8.69542 0.912111346248 0.094488035162 1.0 0.094488035162 1.0 0.094488035162 0.233333333333 0.0 0.0 NC_045512.2:10226-10306 - 10226 10306 27 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10225;81;0&s=-&p=30&e=30&w=0&f=10226-10306-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10226-10306&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.9758148148 1.0 1.32098765432 -9.8228130841 -21.8196333333 8.84381851853 NA 0.368347712844 0.865111509035 NA 0.891662054371 0.0174377340062 0.358024691358 0.385714285714 0.0 NC_045512.2:23559-23621 + 23559 23621 21 NotMaximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23558;63;0&p=30&e=30&w=0&f=23559-23621", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23559-23621&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -12.9816714286 0.8293 2.04529387174 -6.34709349496 -12.5224952381 -0.459176190505 NA 0.322445059417 0.912111346248 NA 0.706439850236 0.322445059417 0.507936507937 1.0 0.555555555556 NC_045512.2:23864-23914 - 23864 23914 17 NotMaximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23863;51;0&s=-&p=30&e=30&w=0&f=23864-23914-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23864-23914&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.9818 1.0 2.54901960784 -5.09286 -27.2060470588 14.2242470588 NA 0.094488035162 0.84177437734 NA 1.0 0.094488035162 0.372549019608 0.0 0.0 NC_045512.2:18623-18667 - 18623 18667 15 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18622;45;0&s=-&p=30&e=30&w=0&f=18623-18667-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18623-18667&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -12.9823733333 1.0 1.02222222222 -12.7001478261 -10.3698066667 -2.61256666663 NA 0.0174377340062 0.0174377340062 NA 0.253101090672 0.0174377340062 0.4 0.584415584416 0.0 NC_045512.2:24509-24592 - 24509 24592 28 NotMaximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24508;84;0&s=-&p=30&e=30&w=0&f=24509-24592-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24509-24592&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.0076857143 1.0 1.67857142857 -7.74925957448 -23.3756642857 10.3679785714 NA 0.590024418037 0.226869607684 NA 1.0 0.0174377340062 0.416666666667 0.285714285714 0.285714285714 NC_045512.2:25906-25959 - 25906 25959 18 Maximal AUA NearCognate ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25905;54;0&s=-&p=30&e=30&w=0&f=25906-25959-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25906-25959&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.0122 1.0 2.03703703704 -6.38780727273 -18.2009333333 5.18873333333 NA 0.407996093114 0.613075044766 NA 0.68114601986 0.294221064626 0.425925925926 0.0 0.0 NC_045512.2:16802-16924 - 16802 16924 41 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16801;123;0&s=-&p=30&e=30&w=0&f=16802-16924-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16802-16924&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.0127439024 1.0 0.772357723577 -16.8480789473 -14.9310512195 1.91830731711 NA 0.808660263715 0.0174377340062 NA 0.680862770633 0.0174377340062 0.349593495935 0.278280542986 0.0 NC_045512.2:18623-18715 - 18623 18715 31 Maximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18622;93;0&s=-&p=30&e=30&w=0&f=18623-18715-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18623-18715&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.0314064516 1.0 1.18279569892 -11.0174618182 -12.7638290323 -0.267577419342 NA 0.0174377340062 0.0174377340062 NA 1.0 0.0174377340062 0.440860215054 0.442857142857 0.0 NC_045512.2:3206-3238 - 3206 3238 11 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3205;33;0&s=-&p=30&e=30&w=0&f=3206-3238-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3206-3238&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.0363909091 0.6569 2.84814835301 -4.57714602378 -18.7910090909 5.75461818181 NA 0.094488035162 0.865899397688 NA 0.0 0.0 0.363636363636 0.0 0.0 NC_045512.2:7934-7969 - 7934 7969 12 Maximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7933;36;0&s=-&p=30&e=30&w=0&f=7934-7969-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7934-7969&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.042375 1.0 1.41666666667 -9.20638235294 -18.7705333333 5.72815833333 NA 0.094488035162 0.845818004232 NA 0.912625752889 0.094488035162 0.444444444444 0.571428571429 0.0 NC_045512.2:21142-21195 - 21142 21195 18 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21141;54;0&s=-&p=30&e=30&w=0&f=21142-21195-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21142-21195&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.0458111111 1.0 1.7037037037 -7.65732391304 -18.6120111111 5.56620000001 NA 0.658831189972 0.890405339411 NA 0.986114276412 0.644945466385 0.425925925926 0.428571428571 0.0 NC_045512.2:14330-14425 + 14330 14425 32 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14329;96;0&p=30&e=30&w=0&f=14330-14425", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14330-14425&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.055340625 1.0 0.84375 -15.4729962963 -9.933009375 -3.12233125 NA 0.706439850236 0.874751749959 NA 0.990594172229 0.681380433013 0.375 0.0 0.0 NC_045512.2:7335-7364 + 7335 7364 10 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7334;30;0&p=30&e=30&w=0&f=7335-7364", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7335-7364&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.05946 1.0 0.833333333333 -15.671352 -13.99809 0.93863 NA 0.390053719681 0.912111346248 NA 0.912111346248 0.390053719681 0.266666666667 0.0 0.366666666667 NC_045512.2:5027-5065 - 5027 5065 13 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5026;39;0&s=-&p=30&e=30&w=0&f=5027-5065-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5027-5065&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.0595461538 1.0 1.35897435897 -9.60985471695 -18.769 5.7094538462 NA 0.229158391665 0.852453198763 NA 0.771463454338 0.0174377340062 0.358974358974 0.0 0.0 NC_045512.2:8675-8737 - 8675 8737 21 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8674;63;0&s=-&p=30&e=30&w=0&f=8675-8737-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8675-8737&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.0649619048 1.0 1.53968253968 -8.48549072167 -23.199647619 10.1346857142 NA 0.094488035162 0.97661728797 NA 1.0 0.0894774540127 0.412698412698 0.39375 0.0 NC_045512.2:24509-24568 - 24509 24568 20 NotMaximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24508;60;0&s=-&p=30&e=30&w=0&f=24509-24568-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24509-24568&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.067905 1.0 1.88333333333 -6.93871061947 -26.710765 13.64286 NA 0.590024418037 0.457834934071 NA 1.0 0.094488035162 0.433333333333 0.375 0.0 NC_045512.2:2071-2106 + 2071 2106 12 Maximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2070;36;0&p=30&e=30&w=0&f=2071-2106", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:2071-2106&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.0706583333 1.0 2.47222222222 -5.28700786516 -22.6837333333 9.61307500003 NA 0.672046231483 0.706439850236 NA 0.413410385805 0.220345108253 0.5 0.5 0.0 NC_045512.2:3581-3613 - 3581 3613 11 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3580;33;0&s=-&p=30&e=30&w=0&f=3581-3613-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3581-3613&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.0719363636 1.0 1.84848484848 -7.07170327867 -25.0493090909 11.9773727273 0.940029301644 0.0 0.694152694123 0.0 1.0 0.0 0.424242424242 0.733333333333 0.0 NC_045512.2:9288-9326 + 9288 9326 13 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9287;39;0&p=30&e=30&w=0&f=9288-9326", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9288-9326&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.0739153846 1.0 1.38461538462 -9.44227222221 -15.5429538462 2.46903846155 0.958499104672 0.094488035162 1.0 0.094488035162 1.0 0.094488035162 0.358974358974 0.0 0.0 NC_045512.2:13152-13187 - 13152 13187 12 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13151;36;0&s=-&p=30&e=30&w=0&f=13152-13187-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13152-13187&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.0799 1.0 0.75 -17.4398666667 -13.8104083333 0.730508333333 NA 0.219560475338 0.912111346248 NA 0.912111346248 0.219560475338 0.472222222222 0.0 0.0 NC_045512.2:10531-10590 + 10531 10590 20 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10530;60;0&p=30&e=30&w=0&f=10531-10590", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10531-10590&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.08415 1.0 1.33333333333 -9.8131125 -22.41261 9.32846 NA 0.791502523197 0.528718867003 NA 1.0 0.49432524825 0.433333333333 0.0 0.0 NC_045512.2:5837-5911 - 5837 5911 25 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5836;75;0&s=-&p=30&e=30&w=0&f=5837-5911-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5837-5911&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.087316 1.0 1.48 -8.84278108108 -17.889864 4.802548 NA 0.86057300993 0.400651147648 NA 0.77236529383 0.366257528895 0.32 0.555555555556 0.0 NC_045512.2:11869-11919 + 11869 11919 17 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;11868;51;0&p=30&e=30&w=0&f=11869-11919", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:11869-11919&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.0886294118 1.0 1.27450980392 -10.26954 -20.5144823529 7.42585294114 NA 0.645004069673 0.293084811981 NA 0.617571219274 0.293084811981 0.372549019608 0.0 0.0 NC_045512.2:1065-1094 - 1065 1094 10 Maximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1064;30;0&s=-&p=30&e=30&w=0&f=1065-1094-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1065-1094&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.09035 1.0 0.833333333333 -15.70842 -21.15907 8.06872 NA 1.0 0.706439850236 NA 0.333954094091 0.0 0.366666666667 0.0 0.0 NC_045512.2:19366-19413 - 19366 19413 16 Maximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19365;48;0&s=-&p=30&e=30&w=0&f=19366-19413-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19366-19413&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.09103125 1.0 1.3125 -9.97411904762 -19.34855 6.25751875 NA 0.452648543057 0.843516197298 NA 1.0 0.364759889305 0.375 0.0 0.0 NC_045512.2:425-454 - 425 454 10 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;424;30;0&s=-&p=30&e=30&w=0&f=425-454-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:425-454&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.09289 1.0 1.93333333333 -6.77218448276 -12.69617 -0.39672 NA 0.58996255901 0.582396223344 NA 1.0 0.465918932118 0.4 0.9375 0.2 NC_045512.2:17854-17922 - 17854 17922 23 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17853;69;0&s=-&p=30&e=30&w=0&f=17854-17922-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17854-17922&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.0957565217 1.0 1.08695652174 -12.048096 -14.122 1.0262434783 NA 0.249438385154 0.912111346248 NA 0.986729610939 0.249438385154 0.31884057971 0.0 0.0 NC_045512.2:8999-9067 - 8999 9067 23 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8998;69;0&s=-&p=30&e=30&w=0&f=8999-9067-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8999-9067&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.098773913 1.0 1.27536231884 -10.2706295454 -19.2031478261 6.10437391309 NA 0.554810353248 0.764278040046 NA 0.971805306853 0.445215692658 0.36231884058 0.0 0.0 NC_045512.2:27850-27894 + 27850 27894 15 Maximal UUG NearCognate ORF7b,ORF8 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27849;45;0&p=30&e=30&w=0&f=27850-27894", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27850-27894&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.1069666667 0.85 1.64384818678 -7.97334375044 -9.72413333333 -3.38283333337 NA 0.706439850236 0.276405664985 NA 0.770034185252 0.0174377340062 0.377777777778 1.28571428571 0.0222222222222 NC_045512.2:6876-6905 - 6876 6905 10 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6875;30;0&s=-&p=30&e=30&w=0&f=6876-6905-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6876-6905&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.11036 1.0 2.23333333333 -5.87031044776 -16.83162 3.72126 NA 0.706439850236 0.391561126485 NA 0.477942373433 0.094488035162 0.4 1.11111111111 0.166666666667 NC_045512.2:6224-6298 - 6224 6298 25 NotMaximal ACG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6223;75;0&s=-&p=30&e=30&w=0&f=6224-6298-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6224-6298&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.120932 0.9813 1.41309286035 -9.28525815122 -19.867428 6.746496 NA 0.566576591242 0.526023115741 NA 0.947693309458 0.355660100928 0.346666666667 0.909090909091 0.0 NC_045512.2:19784-19825 + 19784 19825 14 Maximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19783;42;0&p=30&e=30&w=0&f=19784-19825", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19784-19825&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.1236571429 1.0 1.19047619048 -11.023872 -15.2409214286 2.11726428567 NA 0.452648543057 1.0 NA 1.0 0.452648543057 0.47619047619 0.424242424242 0.0 NC_045512.2:15305-15403 + 15305 15403 33 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15304;99;0&p=30&e=30&w=0&f=15305-15403", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15305-15403&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.1242151515 1.0 0.727272727273 -18.0457958333 -10.7290424242 -2.39517272726 NA 1.0 0.630349991861 NA 1.0 0.630349991861 0.424242424242 0.679633867277 0.393939393939 NC_045512.2:13203-13265 + 13203 13265 21 Maximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13202;63;0&p=30&e=30&w=0&f=13203-13265", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13203-13265&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.1270571429 1.0 0.920634920635 -14.2587 -5.7942 -7.3328571429 NA 0.364759889305 1.0 NA 1.0 0.364759889305 0.47619047619 0.5625 0.428571428571 NC_045512.2:20986-21033 - 20986 21033 16 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20985;48;0&s=-&p=30&e=30&w=0&f=20986-21033-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20986-21033&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.13240625 1.0 1.29166666667 -10.1670241935 -15.924475 2.79206875 NA 0.390053719681 0.226869607684 NA 0.853127136578 0.0174377340062 0.354166666667 0.0 0.0 NC_045512.2:19258-19299 - 19258 19299 14 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19257;42;0&s=-&p=30&e=30&w=0&f=19258-19299-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19258-19299&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.1355357143 1.0 1.59523809524 -8.23421641792 -18.9761285714 5.84059285713 NA 0.499531173694 0.343053882468 NA 1.0 0.343053882468 0.428571428571 0.0 0.0 NC_045512.2:1394-1432 - 1394 1432 13 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1393;39;0&s=-&p=30&e=30&w=0&f=1394-1432-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1394-1432&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.1366 1.0 1.64102564103 -8.005115625 -20.9542384615 7.81763846154 NA 0.0 1.0 NA 0.478801888328 0.0 0.435897435897 0.541666666667 0.0 NC_045512.2:12421-12495 + 12421 12495 25 Maximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12420;75;0&p=30&e=30&w=0&f=12421-12495", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12421-12495&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.148792 1.0 0.88 -14.9418090909 -12.898264 -0.250528 NA 0.343053882468 0.0174377340062 NA 0.756998209344 0.0174377340062 0.4 0.0 0.413333333333 NC_045512.2:24854-24988 - 24854 24988 45 NotMaximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24853;135;0&s=-&p=30&e=30&w=0&f=24854-24988-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24854-24988&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.16232 1.0 1.65925925926 -7.93264821429 -25.2672377778 12.1049177778 NA 0.0174377340062 0.329864886863 NA 1.0 0.0174377340062 0.348148148148 0.0 0.577777777778 NC_045512.2:12713-12760 - 12713 12760 16 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12712;48;0&s=-&p=30&e=30&w=0&f=12713-12760-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12713-12760&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.196075 1.0 0.8125 -16.2413230769 -12.8859125 -0.3101625 NA 0.706439850236 0.933778284226 NA 1.0 0.640218134462 0.5 0.671328671329 0.0 NC_045512.2:14333-14425 + 14333 14425 31 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14332;93;0&p=30&e=30&w=0&f=14333-14425", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14333-14425&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.2041322581 1.0 0.860215053763 -15.34980375 -10.0991064516 -3.10502580649 NA 0.706439850236 0.874751749959 NA 0.0174377340062 0.0174377340062 0.387096774194 0.0 0.0 NC_045512.2:19382-19414 + 19382 19414 11 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19381;33;0&p=30&e=30&w=0&f=19382-19414", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19382-19414&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.2059272727 1.0 1.24242424242 -10.6291609756 -9.5071 -3.6988272727 NA 0.463805958001 1.0 NA 0.968634217809 0.463805958001 0.454545454545 0.0 0.0 NC_045512.2:23864-23899 - 23864 23899 12 NotMaximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23863;36;0&s=-&p=30&e=30&w=0&f=23864-23899-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23864-23899&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.2062666667 1.0 2.72222222222 -4.85128163267 -28.6227416667 15.416475 NA 0.094488035162 0.84177437734 NA 0.706439850236 0.094488035162 0.388888888889 0.0 0.0 NC_045512.2:20836-20883 - 20836 20883 16 Maximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20835;48;0&s=-&p=30&e=30&w=0&f=20836-20883-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20836-20883&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.20991875 1.0 1.33333333333 -9.9074390625 -24.17814375 10.968225 NA 0.68944489663 0.967647729123 NA 0.879970698356 0.563796190786 0.375 0.0 0.0 NC_045512.2:10226-10303 - 10226 10303 26 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10225;78;0&s=-&p=30&e=30&w=0&f=10226-10303-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10226-10303&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.2123730769 1.0 1.34615384615 -9.81490571427 -22.5391346154 9.32676153848 NA 0.368347712844 0.865111509035 NA 1.0 0.343053882468 0.371794871795 0.371428571429 0.0 NC_045512.2:5309-5338 - 5309 5338 10 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5308;30;0&s=-&p=30&e=30&w=0&f=5309-5338-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5309-5338&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.21459 1.0 1.7 -7.77328823529 -15.89916 2.68457 NA 0.673322480873 0.672834120137 NA 0.926391014162 0.599713495035 0.3 0.0 0.0 NC_045512.2:21142-21216 - 21142 21216 25 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21141;75;0&s=-&p=30&e=30&w=0&f=21142-21216-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21142-21216&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.215944 1.0 1.54666666667 -8.54479137931 -15.936604 2.72066 NA 0.658831189972 0.890405339411 NA 0.989177926095 0.648009116067 0.426666666667 0.297619047619 0.0 NC_045512.2:8430-8489 + 8430 8489 20 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8429;60;0&p=30&e=30&w=0&f=8430-8489", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8430-8489&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.223685 1.0 1.21666666667 -10.8687821918 -12.63545 -0.588235 NA 0.755041510663 1.0 NA 0.775787074719 0.67634055022 0.316666666667 1.36363636364 0.0 NC_045512.2:4904-4933 - 4904 4933 10 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4903;30;0&s=-&p=30&e=30&w=0&f=4904-4933-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4904-4933&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.22511 1.0 2.26666666667 -5.83460735294 -20.20134 6.97623 NA 0.094488035162 0.3371902979 NA 0.292114601986 0.094488035162 0.366666666667 0.0 0.0 NC_045512.2:21277-21384 - 21277 21384 36 Maximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21276;108;0&s=-&p=30&e=30&w=0&f=21277-21384-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21277-21384&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.2273694444 1.0 1.57407407407 -8.40326999997 -24.5668722222 11.3395027778 NA 0.994966628683 0.932850398828 NA 0.882448315155 0.806446361713 0.342592592593 0.631578947368 0.0 NC_045512.2:15623-15664 + 15623 15664 14 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15622;42;0&p=30&e=30&w=0&f=15623-15664", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15623-15664&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.2292785714 1.0 0.952380952381 -13.8907425 -7.47206428571 -5.75721428569 0.977994465245 0.434351294156 0.944587335178 0.434351294156 1.0 0.434351294156 0.357142857143 0.0 0.0 NC_045512.2:4703-4765 - 4703 4765 21 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4702;63;0&s=-&p=30&e=30&w=0&f=4703-4765-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4703-4765&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.2336571429 1.0 1.30158730159 -10.1673219513 -12.3286 -0.9050571429 0.254816864724 0.995940094416 0.556122415758 0.254816864724 1.0 0.556122415758 0.365079365079 0.5 0.0 NC_045512.2:16938-16976 + 16938 16976 13 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16937;39;0&p=30&e=30&w=0&f=16938-16976", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16938-16976&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.2388384615 1.0 0.897435897436 -14.7518485714 -14.8057846154 1.56694615388 NA 0.276955884747 0.788582125997 NA 0.259107927723 0.0174377340062 0.435897435897 0.0 0.666666666667 NC_045512.2:21191-21247 + 21191 21247 19 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21190;57;0&p=30&e=30&w=0&f=21191-21247", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21191-21247&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.2401105263 1.0 0.947368421053 -13.9756722222 -11.2794578947 -1.96065263156 NA 0.756408920723 0.995031743448 NA 0.58774540127 0.510470454175 0.438596491228 0.365384615385 0.0 NC_045512.2:902-967 - 902 967 22 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;901;66;0&s=-&p=30&e=30&w=0&f=902-967-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:902-967&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.2443409091 1.0 1.40909090909 -9.39920967743 -16.7609 3.5165590909 0.952749470943 0.0894774540127 0.884317108904 0.0174377340062 1.0 0.0174377340062 0.454545454545 0.589285714286 0.0 NC_045512.2:939-983 - 939 983 15 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;938;45;0&s=-&p=30&e=30&w=0&f=939-983-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:939-983&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.2542866667 1.0 1.33333333333 -9.94071500003 -11.46372 -1.7905666667 NA 0.556500081393 1.0 NA 0.8652873189 0.477942373433 0.466666666667 0.459183673469 0.0 NC_045512.2:21277-21372 - 21277 21372 32 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21276;96;0&s=-&p=30&e=30&w=0&f=21277-21372-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21277-21372&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.254940625 1.0 1.69791666667 -7.80659079755 -26.66783125 13.412890625 NA 0.994966628683 0.965332899235 NA 1.0 0.960299527918 0.34375 0.711111111111 0.0 NC_045512.2:8480-8521 - 8480 8521 14 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8479;42;0&s=-&p=30&e=30&w=0&f=8480-8521-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8480-8521&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.2550857143 1.0 1.21428571429 -10.9159529412 -21.3065642857 8.05147857141 NA 0.0 0.692755982419 NA 0.884203158066 0.0 0.333333333333 0.0 0.0 NC_045512.2:20302-20331 - 20302 20331 10 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20301;30;0&s=-&p=30&e=30&w=0&f=20302-20331-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20302-20331&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.26106 1.0 1.4 -9.47218571429 -18.3741 5.11304 NA 0.863727820283 1.0 NA 1.0 0.863727820283 0.4 1.66666666667 0.0 NC_045512.2:24374-24427 - 24374 24427 18 NotMaximal AUU NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24373;54;0&s=-&p=30&e=30&w=0&f=24374-24427-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24374-24427&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.2688111111 1.0 1.96296296296 -6.75958301886 -22.6907833333 9.42197222223 NA 0.653986651473 0.415520104184 NA 0.964069672798 0.390226273808 0.407407407407 0.0 0.722222222222 NC_045512.2:16802-16930 - 16802 16930 43 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16801;129;0&s=-&p=30&e=30&w=0&f=16802-16930-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16802-16930&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.2741 1.0 0.782945736434 -16.9540485149 -14.8330162791 1.55891627907 NA 0.808660263715 0.0174377340062 NA 0.387302620869 0.0174377340062 0.348837209302 0.265432098765 0.0 NC_045512.2:1394-1429 - 1394 1429 12 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1393;36;0&s=-&p=30&e=30&w=0&f=1394-1429-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1394-1429&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.278125 1.0 1.63888888889 -8.10190677966 -20.2343166667 6.95619166667 0.318587009604 0.0 1.0 0.0 1.0 0.0 0.472222222222 0.5 0.0 NC_045512.2:9671-9727 - 9671 9727 19 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9670;57;0&s=-&p=30&e=30&w=0&f=9671-9727-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9671-9727&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.2964894737 1.0 1.28070175439 -10.382190411 -19.1610263158 5.86453684209 NA 0.094488035162 0.878287481686 NA 0.990900211623 0.085388246785 0.298245614035 0.0 0.0 NC_045512.2:20156-20260 + 20156 20260 35 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20155;105;0&p=30&e=30&w=0&f=20156-20260", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20156-20260&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.2992342857 1.0 1.42857142857 -9.30946399999 -10.7193257143 -2.57990857141 NA 0.364759889305 0.255018720495 NA 0.0 0.0 0.314285714286 0.0 0.0 NC_045512.2:16211-16273 - 16211 16273 21 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16210;63;0&s=-&p=30&e=30&w=0&f=16211-16273-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16211-16273&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.3083809524 1.0 0.984126984127 -13.5230322581 -11.8042619048 -1.50411904764 NA 0.746716587986 1.0 NA 1.0 0.746716587986 0.460317460317 0.3 0.0 NC_045512.2:26520-26579 - 26520 26579 20 Maximal UUG NearCognate M =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26519;60;0&s=-&p=30&e=30&w=0&f=26520-26579-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26520-26579&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.31865 0.9995 2.48532306024 -5.35892102442 -31.53064 18.21199 NA 0.094488035162 0.68114601986 NA 1.0 0.0174377340062 0.433333333333 0.714285714286 0.0 NC_045512.2:16856-16891 + 16856 16891 12 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16855;36;0&p=30&e=30&w=0&f=16856-16891", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16856-16891&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.32065 1.0 0.972222222222 -13.70124 -12.3555 -0.96515 0.975197786098 1.0 1.0 0.975197786098 1.0 1.0 0.361111111111 0.857142857143 0.0 NC_045512.2:10608-10667 + 10608 10667 20 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10607;60;0&p=30&e=30&w=0&f=10608-10667", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10608-10667&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.32155 1.0 1.06666666667 -12.488953125 -8.048195 -5.273355 NA 0.457834934071 0.368347712844 NA 0.997997720983 0.094488035162 0.416666666667 0.384615384615 0.0 NC_045512.2:8240-8278 - 8240 8278 13 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8239;39;0&s=-&p=30&e=30&w=0&f=8240-8278-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8240-8278&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.3227307692 1.0 1.58974358974 -8.38042741934 -21.8409384615 8.51820769234 NA 0.813755494058 0.704766400781 NA 0.634562917141 0.267084486407 0.358974358974 0.8125 0.0 NC_045512.2:20772-20846 + 20772 20846 25 Maximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20771;75;0&p=30&e=30&w=0&f=20772-20846", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20772-20846&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.332356 1.0 0.933333333333 -14.2846671429 -17.478768 4.146412 NA 0.655930327202 0.906918443757 NA 0.978733517825 0.562848770959 0.32 0.535714285714 0.36 NC_045512.2:1097-1147 - 1097 1147 17 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1096;51;0&s=-&p=30&e=30&w=0&f=1097-1147-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1097-1147&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.3344235294 1.0 1.25490196078 -10.62586875 -16.3101411765 2.97571764707 NA 0.390053719681 0.680029301644 NA 0.094488035162 0.0174377340062 0.313725490196 0.0 0.823529411765 NC_045512.2:14978-15034 - 14978 15034 19 Maximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14977;57;0&s=-&p=30&e=30&w=0&f=14978-15034-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14978-15034&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.3389473684 1.0 0.824561403509 -16.1770212766 -10.8307526316 -2.50819473682 NA 1.0 0.271828097021 NA 0.271828097021 0.271828097021 0.315789473684 0.7125 0.0 NC_045512.2:16802-16921 - 16802 16921 40 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16801;120;0&s=-&p=30&e=30&w=0&f=16802-16921-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16802-16921&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.34189 1.0 0.783333333333 -17.0322 -15.1807675 1.8388775 0.875041510663 0.808660263715 0.0174377340062 0.0174377340062 1.0 0.0174377340062 0.341666666667 0.307692307692 0.0 NC_045512.2:19768-19842 - 19768 19842 25 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19767;75;0&s=-&p=30&e=30&w=0&f=19768-19842-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19768-19842&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.346556 1.0 1.21333333333 -10.9999087912 -14.769036 1.42248 NA 0.0174377340062 0.952703890607 NA 0.922825980791 0.0174377340062 0.386666666667 0.357142857143 0.0 NC_045512.2:6072-6119 - 6072 6119 16 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6071;48;0&s=-&p=30&e=30&w=0&f=6072-6119-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6072-6119&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.34889375 0.9813 1.33751277347 -9.98038599316 -19.7367125 6.38781875 NA 0.407305876608 0.32035161973 NA 0.981299039557 0.0894774540127 0.3125 0.0 0.0 NC_045512.2:24374-24424 - 24374 24424 17 NotMaximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24373;51;0&s=-&p=30&e=30&w=0&f=24374-24424-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24374-24424&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.3515470588 1.0 1.98039215686 -6.74187029702 -23.6992235294 10.3476764706 NA 0.653986651473 0.415520104184 NA 1.0 0.390226273808 0.43137254902 0.0 0.764705882353 NC_045512.2:13685-13756 + 13685 13756 24 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13684;72;0&p=30&e=30&w=0&f=13685-13756", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13685-13756&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.3530541667 1.0 1.09722222222 -12.1698721519 -8.4376875 -4.9153666667 1.0 0.948510499756 0.673322480873 0.654950349992 1.0 0.654950349992 0.277777777778 0.0 0.222222222222 NC_045512.2:18623-18709 - 18623 18709 29 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18622;87;0&s=-&p=30&e=30&w=0&f=18623-18709-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18623-18709&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.3537206897 1.0 1.19540229885 -11.1709009616 -13.6403793103 0.286658620645 NA 0.0174377340062 0.0174377340062 NA 0.987712843887 0.0174377340062 0.436781609195 0.481994459834 0.0 NC_045512.2:10587-10667 + 10587 10667 27 Maximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10586;81;0&p=30&e=30&w=0&f=10587-10667", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10587-10667&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.3549555556 1.0 1.03703703704 -12.8779928572 -8.63997037037 -4.71498518523 NA 0.457834934071 0.368347712844 NA 0.979550708123 0.094488035162 0.395061728395 0.317647058824 0.0 NC_045512.2:14108-14158 - 14108 14158 17 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14107;51;0&s=-&p=30&e=30&w=0&f=14108-14158-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14108-14158&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.3558705882 1.0 1.21568627451 -10.9862806451 -5.79664117647 -7.55922941173 0.888233762006 0.364759889305 0.355660100928 0.355660100928 1.0 0.355660100928 0.392156862745 0.51 0.0 NC_045512.2:1394-1843 - 1394 1843 150 Maximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1393;450;0&s=-&p=30&e=30&w=0&f=1394-1843-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1394-1843&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.358118 1.0 1.83555555556 -7.27742506053 -20.9572733333 7.59915533333 NA 0.0 0.0174377340062 NA 0.683255738239 0.0 0.393333333333 0.413277355025 0.113333333333 NC_045512.2:24854-24991 - 24854 24991 46 Maximal AGG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24853;138;0&s=-&p=30&e=30&w=0&f=24854-24991-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24854-24991&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.3664630435 1.0 1.64492753623 -8.12586740089 -24.6785543478 11.3120913043 NA 0.0174377340062 0.329864886863 NA 0.856011720658 0.0 0.355072463768 0.0 0.586956521739 NC_045512.2:902-997 - 902 997 32 NotMaximal ACG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;901;96;0&s=-&p=30&e=30&w=0&f=902-997-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:902-997&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.3689625 1.0 1.46875 -9.10227234043 -15.813075 2.4441125 NA 0.0894774540127 0.884317108904 NA 0.0174377340062 0.0174377340062 0.458333333333 0.808421052632 0.0 NC_045512.2:14066-14140 + 14066 14140 25 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14065;75;0&p=30&e=30&w=0&f=14066-14140", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14066-14140&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.38136 1.0 1.12 -11.9476428571 -6.100128 -7.281232 NA 0.546736122416 0.0174377340062 NA 0.890405339411 0.0174377340062 0.426666666667 0.595238095238 0.0 NC_045512.2:5258-5290 - 5258 5290 11 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5257;33;0&s=-&p=30&e=30&w=0&f=5258-5290-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5258-5290&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.3869545455 1.0 1.15151515152 -11.6255131579 -20.2559363636 6.86898181814 NA 0.90084974768 0.59260621846 NA 0.673322480873 0.262939931629 0.30303030303 0.0 0.0 NC_045512.2:16487-16600 + 16487 16600 38 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16486;114;0&p=30&e=30&w=0&f=16487-16600", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16487-16600&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.3982894737 1.0 0.885964912281 -15.1228217822 -8.76122368421 -4.63706578949 NA 0.0174377340062 0.0174377340062 NA 1.0 0.0174377340062 0.333333333333 0.350769230769 0.201754385965 NC_045512.2:9569-9610 - 9569 9610 14 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9568;42;0&s=-&p=30&e=30&w=0&f=9569-9610-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9569-9610&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.4012928571 1.0 1.09523809524 -12.2359630434 -16.0486214286 2.64732857147 NA 0.477942373433 0.592974116881 NA 1.0 0.390053719681 0.285714285714 0.0 0.857142857143 NC_045512.2:14412-14444 + 14412 14444 11 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14411;33;0&p=30&e=30&w=0&f=14412-14444", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14412-14444&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.4022363636 1.0 0.939393939394 -14.2668967742 -16.0991181818 2.69688181822 NA 0.0174377340062 0.884317108904 NA 0.94142275761 0.0174377340062 0.30303030303 0.0 0.0 NC_045512.2:10418-10453 - 10418 10453 12 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10417;36;0&s=-&p=30&e=30&w=0&f=10418-10453-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10418-10453&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.4067416667 1.0 1.36111111111 -9.84985102043 -15.7381583333 2.33141666663 NA 0.706439850236 0.831450431385 NA 0.551320201856 0.518202832492 0.472222222222 0.0 0.0 NC_045512.2:15002-15055 + 15002 15055 18 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15001;54;0&p=30&e=30&w=0&f=15002-15055", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15002-15055&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.40985 1.0 0.907407407407 -14.7782020408 -8.29846111111 -5.11138888889 0.990900211623 0.912111346248 0.706439850236 0.697340061859 1.0 0.706439850236 0.37037037037 1.125 0.0 NC_045512.2:9635-9667 - 9635 9667 11 Maximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9634;33;0&s=-&p=30&e=30&w=0&f=9635-9667-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9635-9667&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.4114181818 1.0 1.27272727273 -10.5375428571 -19.0773181818 5.66590000002 NA 0.311121601823 0.706439850236 NA 0.540237668891 0.0174377340062 0.424242424242 0.0 0.0 NC_045512.2:3699-3749 + 3699 3749 17 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3698;51;0&p=30&e=30&w=0&f=3699-3749", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3699-3749&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.4157411765 1.0 1.88235294118 -7.12711250002 -10.0157529412 -3.39998823532 NA 0.7689825818 0.912111346248 NA 0.621787400293 0.359423734332 0.372549019608 0.0 0.0 NC_045512.2:9569-9622 - 9569 9622 18 Maximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9568;54;0&s=-&p=30&e=30&w=0&f=9569-9622-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9569-9622&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.4167611111 1.0 1.09259259259 -12.2797474576 -16.3742166667 2.95745555557 NA 0.477942373433 0.592974116881 NA 0.912111346248 0.390053719681 0.277777777778 0.0 0.722222222222 NC_045512.2:21142-21198 - 21142 21198 19 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21141;57;0&s=-&p=30&e=30&w=0&f=21142-21198-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21142-21198&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.4189473684 1.0 1.70175438596 -7.88536082473 -17.7217 4.3027526316 NA 0.658831189972 0.890405339411 NA 0.884922676217 0.570913234576 0.421052631579 0.407142857143 0.0 NC_045512.2:16802-16939 - 16802 16939 46 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16801;138;0&s=-&p=30&e=30&w=0&f=16802-16939-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16802-16939&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.4228586957 1.0 0.797101449275 -16.8395863637 -14.2211521739 0.798293478213 0.259107927723 0.808660263715 0.0174377340062 0.0174377340062 0.979550708123 0.0174377340062 0.347826086957 0.246428571429 0.0 NC_045512.2:24854-24982 - 24854 24982 43 NotMaximal AGG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24853;129;0&s=-&p=30&e=30&w=0&f=24854-24982-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24854-24982&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.4268697674 1.0 1.68992248062 -7.94525779814 -26.043072093 12.6162023256 NA 0.0174377340062 0.355158717239 NA 0.706439850236 0.0174377340062 0.348837209302 0.0 0.558139534884 NC_045512.2:11973-12038 + 11973 12038 22 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;11972;66;0&p=30&e=30&w=0&f=11973-12038", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:11973-12038&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.4275863636 1.0 1.27272727273 -10.5502464285 -9.69206363636 -3.73552272724 NA 1.0 0.976900537197 NA 0.433328992349 0.433328992349 0.393939393939 0.0 0.0 NC_045512.2:7113-7148 + 7113 7148 12 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7112;36;0&p=30&e=30&w=0&f=7113-7148", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7113-7148&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.4278083333 1.0 1.52777777778 -8.78911090907 -13.8047 0.3768916667 NA 0.867156112649 0.477942373433 NA 0.912111346248 0.390053719681 0.388888888889 0.0 0.0 NC_045512.2:21277-21363 - 21277 21363 29 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21276;87;0&s=-&p=30&e=30&w=0&f=21277-21363-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21277-21363&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.4286827586 1.0 1.67816091954 -8.00202328766 -24.5658931034 11.1372103448 NA 0.994966628683 0.965332899235 NA 0.759736285203 0.710704867329 0.333333333333 0.852941176471 0.0 NC_045512.2:5027-5095 - 5027 5095 23 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5026;69;0&s=-&p=30&e=30&w=0&f=5027-5095-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5027-5095&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.4403565217 1.0 1.40579710145 -9.56066597935 -18.8935521739 5.45319565221 0.994989418851 0.229158391665 0.852453198763 0.0174377340062 1.0 0.0174377340062 0.347826086957 0.0 0.0 NC_045512.2:13152-13193 - 13152 13193 14 Maximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13151;42;0&s=-&p=30&e=30&w=0&f=13152-13193-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13152-13193&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.4429714286 1.0 0.928571428571 -14.4770461539 -14.9773571429 1.53438571426 NA 0.219560475338 0.251772749471 NA 0.0174377340062 0.0174377340062 0.452380952381 0.0 0.0 NC_045512.2:14888-14932 + 14888 14932 15 NotMaximal ACG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14887;45;0&p=30&e=30&w=0&f=14888-14932", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14888-14932&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.4512533333 1.0 0.711111111111 -18.915825 -7.69186666667 -5.75938666663 NA 0.385043138532 0.457834934071 NA 1.0 0.385043138532 0.444444444444 0.909090909091 0.0 NC_045512.2:20914-20943 - 20914 20943 10 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20913;30;0&s=-&p=30&e=30&w=0&f=20914-20943-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20914-20943&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.46121 1.0 1.23333333333 -10.9144945946 -17.50551 4.0443 NA 0.364759889305 0.333954094091 NA 0.694077812144 0.0 0.566666666667 0.857142857143 0.0 NC_045512.2:4703-4756 - 4703 4756 18 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4702;54;0&s=-&p=30&e=30&w=0&f=4703-4756-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4703-4756&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.4623388889 1.0 1.33333333333 -10.0967541667 -14.2060888889 0.743749999989 NA 0.995940094416 0.556122415758 NA 0.55534103858 0.226869607684 0.37037037037 0.593406593407 0.0 NC_045512.2:15137-15172 - 15137 15172 12 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15136;36;0&s=-&p=30&e=30&w=0&f=15137-15172-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15137-15172&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.4640833333 1.0 0.611111111111 -22.0321363636 -9.97410833333 -3.48997499997 NA 0.890405339411 0.890405339411 NA 0.483805958001 0.278134461989 0.25 0.0 0.388888888889 NC_045512.2:23675-23713 - 23675 23713 13 Maximal AUU NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23674;39;0&s=-&p=30&e=30&w=0&f=23675-23713-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23675-23713&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.4672153846 1.0 1.53846153846 -8.75368999999 -29.1469692308 15.6797538462 NA 0.418398176787 0.673202018558 NA 0.969034673612 0.259879537685 0.358974358974 0.0 0.769230769231 NC_045512.2:14870-14932 + 14870 14932 21 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14869;63;0&p=30&e=30&w=0&f=14870-14932", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14870-14932&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.4685190476 1.0 0.746031746032 -18.0535468085 -8.46246666667 -5.00605238093 NA 0.385043138532 0.457834934071 NA 0.694641054859 0.0894774540127 0.380952380952 0.875 0.0 NC_045512.2:26441-26551 + 26441 26551 37 Maximal AUU NearCognate E,M =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26440;111;0&p=30&e=30&w=0&f=26441-26551", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26441-26551&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.4879108108 0.9713 1.17268380217 -11.5017456418 -14.0272648649 0.539354054065 NA 0.703805958001 0.495627543545 NA 0.477942373433 0.0 0.333333333333 0.979411764706 0.0 NC_045512.2:16027-16077 - 16027 16077 17 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16026;51;0&s=-&p=30&e=30&w=0&f=16027-16077-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16027-16077&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.4895823529 1.0 1.21568627451 -11.0962693548 -23.0653588235 9.57577647063 NA 0.845205925444 1.0 NA 0.986729610939 0.831935536383 0.392156862745 0.0 0.0 NC_045512.2:22600-22650 + 22600 22650 17 Maximal AUU NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22599;51;0&p=30&e=30&w=0&f=22600-22650", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22600-22650&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.4904764706 1.0 2.78431372549 -4.84517112676 -26.6951882353 13.2047117647 NA 0.519348852352 0.285651961582 NA 0.383945954745 0.285651961582 0.411764705882 0.0 0.0 NC_045512.2:1394-1831 - 1394 1831 146 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1393;438;0&s=-&p=30&e=30&w=0&f=1394-1831-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1394-1831&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.4926136986 1.0 1.81278538813 -7.44302871535 -20.7039917808 7.21137808222 NA 0.0 0.0174377340062 NA 0.333954094091 0.0 0.392694063927 0.424242424242 0.116438356164 NC_045512.2:14864-14932 + 14864 14932 23 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14863;69;0&p=30&e=30&w=0&f=14864-14932", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14864-14932&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.4957695652 1.0 0.753623188406 -17.9078480769 -8.01773913043 -5.47803043477 NA 0.385043138532 0.457834934071 NA 0.912111346248 0.385043138532 0.376811594203 0.821428571429 0.0 NC_045512.2:19768-19839 - 19768 19839 24 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19767;72;0&s=-&p=30&e=30&w=0&f=19768-19839-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19768-19839&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.496925 1.0 1.15277777778 -11.7081759036 -14.0876458333 0.590720833333 NA 0.0174377340062 0.952703890607 NA 0.957685170112 0.0174377340062 0.402777777778 0.342857142857 0.0 NC_045512.2:902-961 - 902 961 20 NotMaximal ACG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;901;60;0&s=-&p=30&e=30&w=0&f=902-961-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:902-961&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.49753 1.0 1.35 -9.99817037037 -18.76631 5.26878 NA 0.0894774540127 0.884317108904 NA 1.0 0.0174377340062 0.466666666667 0.615384615385 0.0 NC_045512.2:20122-20157 - 20122 20157 12 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20121;36;0&s=-&p=30&e=30&w=0&f=20122-20157-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20122-20157&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.5084666667 1.0 1.05555555556 -12.7974947369 -14.1332416667 0.624774999967 NA 0.640670682077 0.436916815888 NA 0.0 0.0 0.305555555556 1.2 0.666666666667 NC_045512.2:26786-26869 + 26786 26869 28 NotMaximal AGG NearCognate M =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26785;84;0&p=30&e=30&w=0&f=26786-26869", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26786-26869&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.5092857143 1.0 0.964285714286 -14.0096296296 -16.4357571429 2.92647142856 NA 0.274540126974 0.0174377340062 NA 0.693169461175 0.0174377340062 0.47619047619 0.842105263158 0.0 NC_045512.2:25142-25180 - 25142 25180 13 NotMaximal AUA NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25141;39;0&s=-&p=30&e=30&w=0&f=25142-25180-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25142-25180&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.5144923077 1.0 1.20512820513 -11.2141531915 -20.5584769231 7.04398461538 NA 1.0 0.450779749308 NA 1.0 0.450779749308 0.358974358974 0.8125 0.769230769231 NC_045512.2:7323-7364 + 7323 7364 14 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7322;42;0&p=30&e=30&w=0&f=7323-7364", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7323-7364&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.5236642857 1.0 0.880952380952 -15.3511864865 -11.4360928571 -2.08757142856 NA 0.390053719681 0.912111346248 NA 0.796542405991 0.390053719681 0.285714285714 0.0 0.547619047619 NC_045512.2:27495-27542 + 27495 27542 16 NotMaximal UUG NearCognate ORF7a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27494;48;0&p=30&e=30&w=0&f=27495-27542", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27495-27542&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.52508125 1.0 1.4375 -9.40875217391 -16.56114375 3.0360625 NA 0.980175809865 0.628422594823 NA 1.0 0.608598404688 0.458333333333 0.428571428571 0.0 NC_045512.2:25931-25981 + 25931 25981 17 NotMaximal CUG NearCognate ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25930;51;0&p=30&e=30&w=0&f=25931-25981", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25931-25981&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.5266647059 1.0 1.35294117647 -9.99796956523 -8.11452352941 -5.41214117649 NA 0.328748168647 0.7743805958 NA 0.094488035162 0.0174377340062 0.411764705882 0.0 0.0 NC_045512.2:2225-2314 - 2225 2314 30 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2224;90;0&s=-&p=30&e=30&w=0&f=2225-2314-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:2225-2314&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.53399 1.0 2.41111111111 -5.61317557604 -23.1159933333 9.58200333333 NA 0.0883998046557 0.358977698193 NA 0.681644147811 0.0793000162787 0.388888888889 0.314685314685 0.0 NC_045512.2:16070-16102 + 16070 16102 11 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16069;33;0&p=30&e=30&w=0&f=16070-16102", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16070-16102&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.5351181818 1.0 0.757575757576 -17.866356 -10.3478909091 -3.18722727271 0.912111346248 0.0174377340062 1.0 0.0174377340062 1.0 0.0174377340062 0.30303030303 0.0 0.0 NC_045512.2:19366-19404 - 19366 19404 13 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19365;39;0&s=-&p=30&e=30&w=0&f=19366-19404-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19366-19404&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.5421846154 1.0 1.25641025641 -10.7784734694 -21.7282538462 8.18606923075 0.984636171252 0.452648543057 0.843516197298 0.364759889305 1.0 0.364759889305 0.384615384615 0.0 0.0 NC_045512.2:7235-7348 - 7235 7348 38 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7234;114;0&s=-&p=30&e=30&w=0&f=7235-7348-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7235-7348&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.5466289474 1.0 1.27192982456 -10.6504531035 -16.6793921053 3.13276315786 NA 0.421523685496 0.094488035162 NA 0.828969558847 0.094488035162 0.324561403509 0.0 0.236842105263 NC_045512.2:15213-15257 + 15213 15257 15 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15212;45;0&p=30&e=30&w=0&f=15213-15257", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15213-15257&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.5495333333 1.0 0.688888888889 -19.6686774193 -12.2602733333 -1.28925999997 NA 0.0 0.0 NA 0.681933908514 0.0 0.333333333333 0.0 0.377777777778 NC_045512.2:19258-19320 - 19258 19320 21 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19257;63;0&s=-&p=30&e=30&w=0&f=19258-19320-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19258-19320&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.5511285714 1.0 1.49206349206 -9.08213936168 -17.2837619048 3.73263333336 NA 0.499531173694 0.343053882468 NA 1.0 0.343053882468 0.396825396825 0.0 0.0 NC_045512.2:10226-10294 - 10226 10294 23 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10225;69;0&s=-&p=30&e=30&w=0&f=10226-10294-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10226-10294&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.5545 1.0 1.4347826087 -9.44707575758 -23.7512521739 10.1967521739 0.986729610939 0.368347712844 0.865111509035 0.343053882468 1.0 0.343053882468 0.376811594203 0.410714285714 0.0 NC_045512.2:10002-10112 + 10002 10112 37 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10001;111;0&p=30&e=30&w=0&f=10002-10112", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10002-10112&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.5555972973 1.0 1.03603603604 -13.0840982609 -13.4240594595 -0.131537837841 NA 0.539195832655 0.890405339411 NA 0.955269412339 0.494465244994 0.423423423423 0.0 0.243243243243 NC_045512.2:24232-24273 + 24232 24273 14 NotMaximal AGG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24231;42;0&p=30&e=30&w=0&f=24232-24273", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24232-24273&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.5593428571 1.0 1.2619047619 -10.7451396226 -17.00545 3.4461071429 NA 0.893739215367 1.0 NA 0.595038254924 0.41107276575 0.380952380952 0.0 0.119047619048 NC_045512.2:18551-18613 + 18551 18613 21 Maximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18550;63;0&p=30&e=30&w=0&f=18551-18613", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18551-18613&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.5593904762 1.0 1.33333333333 -10.1695428572 -13.5721238095 0.0127333333238 NA 0.364759889305 0.364759889305 NA 0.997366107765 0.364759889305 0.412698412698 0.375 0.0 NC_045512.2:27510-27542 + 27510 27542 11 NotMaximal AUA NearCognate ORF7a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27509;33;0&p=30&e=30&w=0&f=27510-27542", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27510-27542&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.5617272727 1.0 1.24242424242 -10.9155365853 -10.3945545455 -3.16717272725 NA 0.980175809865 0.921982744587 NA 0.455243366433 0.383552010418 0.454545454545 0.66 0.0 NC_045512.2:1524-1556 + 1524 1556 11 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1523;33;0&p=30&e=30&w=0&f=1524-1556", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1524-1556&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.5619 1.0 1.27272727273 -10.6557785714 -6.67813636364 -6.88376363636 NA 0.524489663031 1.0 NA 0.950783005046 0.524489663031 0.545454545455 0.814814814815 0.0 NC_045512.2:20165-20260 + 20165 20260 32 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20164;96;0&p=30&e=30&w=0&f=20165-20260", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20165-20260&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.56523125 1.0 1.48958333333 -9.10672867133 -10.420284375 -3.144946875 NA 0.364759889305 0.255018720495 NA 0.0 0.0 0.322916666667 0.0 0.0 NC_045512.2:20189-20260 + 20189 20260 24 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20188;72;0&p=30&e=30&w=0&f=20189-20260", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20189-20260&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.5655875 1.0 1.43055555556 -9.4827407767 -12.6246208333 -0.940966666667 NA 0.364759889305 0.279524662217 NA 0.587895165229 0.0 0.305555555556 0.0 0.0 NC_045512.2:20304-20339 + 20304 20339 12 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20303;36;0&p=30&e=30&w=0&f=20304-20339", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20304-20339&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.5690166667 1.0 1.41666666667 -9.57812941179 -10.3549666667 -3.21405000003 NA 0.78138694449 0.884323620381 NA 0.383750610451 0.289838840957 0.388888888889 1.5 0.0 NC_045512.2:16373-16414 + 16373 16414 14 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16372;42;0&p=30&e=30&w=0&f=16373-16414", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16373-16414&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.5707857143 1.0 1.02380952381 -13.2551860465 -9.12882142857 -4.44196428573 NA 0.987712843887 0.993911769494 NA 0.972840631613 0.938310271854 0.452380952381 0.477272727273 0.404761904762 NC_045512.2:24854-24979 - 24854 24979 42 NotMaximal AUC NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24853;126;0&s=-&p=30&e=30&w=0&f=24854-24979-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24854-24979&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.5719571429 1.0 1.71428571429 -7.91697500003 -26.3111928571 12.7392357142 NA 0.0174377340062 0.355158717239 NA 0.699560475338 0.0174377340062 0.34126984127 0.0 0.547619047619 NC_045512.2:18595-18630 - 18595 18630 12 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18594;36;0&s=-&p=30&e=30&w=0&f=18595-18630-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18595-18630&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.5725083333 1.0 0.833333333333 -16.28701 -15.3543083333 1.78180000003 NA 0.276405664985 0.359221878561 NA 0.627081230669 0.0 0.416666666667 0.0 0.0 NC_045512.2:7626-7655 - 7626 7655 10 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7625;30;0&s=-&p=30&e=30&w=0&f=7626-7655-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7626-7655&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.57967 1.0 1.46666666667 -9.25886590909 -16.26067 2.681 0.813755494058 0.656181019046 1.0 0.469936513104 1.0 0.656181019046 0.366666666667 0.0 0.0 NC_045512.2:7691-7771 - 7691 7771 27 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7690;81;0&s=-&p=30&e=30&w=0&f=7691-7771-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7691-7771&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.5845407407 1.0 1.72839506173 -7.85962714283 -21.2443481481 7.65980740745 0.462519941397 0.368347712844 0.795165228716 0.0883998046557 0.706439850236 0.094488035162 0.37037037037 0.366515837104 0.0 NC_045512.2:21277-21324 - 21277 21324 16 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21276;48;0&s=-&p=30&e=30&w=0&f=21277-21324-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21277-21324&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.58839375 1.0 2.0 -6.794196875 -27.79440625 14.2060125 NA 0.994966628683 0.965332899235 NA 0.949161647404 0.909461175322 0.354166666667 1.37142857143 0.0 NC_045512.2:8240-8269 - 8240 8269 10 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8239;30;0&s=-&p=30&e=30&w=0&f=8240-8269-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8240-8269&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.60286 1.0 1.73333333333 -7.84780384615 -21.62506 8.0222 NA 0.813755494058 0.704766400781 NA 0.302516685658 0.252290411851 0.4 0.833333333333 0.0 NC_045512.2:14867-14932 + 14867 14932 22 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14866;66;0&p=30&e=30&w=0&f=14867-14932", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14867-14932&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.6097181818 1.0 0.772727272727 -17.6125764706 -8.04091363636 -5.56880454544 NA 0.385043138532 0.457834934071 NA 0.635741494384 0.0174377340062 0.378787878788 0.846153846154 0.0 NC_045512.2:20309-20353 + 20309 20353 15 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20308;45;0&p=30&e=30&w=0&f=20309-20353", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20309-20353&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.6111266667 1.0 1.2 -11.3426055556 -9.41432 -4.1968066667 0.706439850236 0.573947582614 1.0 0.28038743285 1.0 0.573947582614 0.355555555556 1.42857142857 0.0 NC_045512.2:12486-12515 - 12486 12515 10 NotMaximal ACG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12485;30;0&s=-&p=30&e=30&w=0&f=12486-12515-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12486-12515&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.61534 1.0 1.0 -13.61534 -17.90427 4.28893 NA 0.0174377340062 1.0 NA 1.0 0.0174377340062 0.266666666667 2.5 0.533333333333 NC_045512.2:14891-14932 + 14891 14932 14 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14890;42;0&p=30&e=30&w=0&f=14891-14932", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14891-14932&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.6160714286 1.0 0.714285714286 -19.0625 -8.46182857143 -5.15424285717 0.994989418851 0.385043138532 0.457834934071 0.385043138532 1.0 0.385043138532 0.428571428571 0.525 0.0 NC_045512.2:21142-21201 - 21142 21201 20 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21141;60;0&s=-&p=30&e=30&w=0&f=21142-21201-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21142-21201&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.61989 1.0 1.65 -8.25447878788 -18.63973 5.01984 NA 0.658831189972 0.890405339411 NA 0.556500081393 0.262939931629 0.4 0.428571428571 0.0 NC_045512.2:7691-7783 - 7691 7783 31 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7690;93;0&s=-&p=30&e=30&w=0&f=7691-7783-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7691-7783&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.630883871 1.0 1.74193548387 -7.82513703706 -23.5072645161 9.87638064513 NA 0.368347712844 0.795165228716 NA 0.812697379131 0.368347712844 0.354838709677 0.34962406015 0.0 NC_045512.2:20036-20083 + 20036 20083 16 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20035;48;0&p=30&e=30&w=0&f=20036-20083", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20036-20083&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.639275 1.0 1.33333333333 -10.22945625 -17.2845875 3.6453125 0.936330783005 0.0174377340062 0.0174377340062 0.0174377340062 1.0 0.0174377340062 0.354166666667 0.0 0.0 NC_045512.2:13913-13954 - 13913 13954 14 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13912;42;0&s=-&p=30&e=30&w=0&f=13913-13954-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13913-13954&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.6403785714 1.0 1.14285714286 -11.93533125 -18.2225 4.5821214286 NA 0.997997720983 1.0 NA 0.0174377340062 0.0174377340062 0.285714285714 0.0 0.0 NC_045512.2:7098-7148 + 7098 7148 17 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7097;51;0&p=30&e=30&w=0&f=7098-7148", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7098-7148&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.651 1.0 1.66666666667 -8.1906 -13.6007764706 -0.0502235294118 NA 0.867156112649 0.477942373433 NA 0.085388246785 0.085388246785 0.392156862745 0.0 0.0 NC_045512.2:10599-10667 + 10599 10667 23 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10598;69;0&p=30&e=30&w=0&f=10599-10667", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10599-10667&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.6597173913 1.0 1.07246376812 -12.7367635135 -8.45986086957 -5.19985652173 0.947546801237 0.457834934071 0.368347712844 0.0174377340062 1.0 0.094488035162 0.420289855072 0.328571428571 0.0 NC_045512.2:8999-9061 - 8999 9061 21 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8998;63;0&s=-&p=30&e=30&w=0&f=8999-9061-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8999-9061&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.6599047619 1.0 1.33333333333 -10.2449285714 -19.8267333333 6.16682857143 NA 0.554810353248 0.764278040046 NA 0.94643333876 0.445215692658 0.380952380952 0.0 0.0 NC_045512.2:543-683 + 543 683 47 Maximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;542;141;0&p=30&e=30&w=0&f=543-683", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:543-683&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.6623361702 1.0 1.20567375887 -11.3317023529 -8.60889361702 -5.05344255318 NA 1.0 0.398267947257 NA 1.0 0.398267947257 0.517730496454 0.97465437788 0.645390070922 NC_045512.2:11008-11085 + 11008 11085 26 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;11007;78;0&p=30&e=30&w=0&f=11008-11085", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:11008-11085&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.66325 1.0 1.24358974359 -10.986943299 -15.2452769231 1.58202692308 NA 0.73288295621 1.0 NA 1.0 0.73288295621 0.320512820513 0.0 0.0 NC_045512.2:18335-18364 + 18335 18364 10 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18334;30;0&p=30&e=30&w=0&f=18335-18364", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18335-18364&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.66585 1.0 1.33333333333 -10.2493875 -7.21271 -6.45314 NA 0.890405339411 0.586592869933 NA 1.0 0.586592869933 0.4 0.0 0.0 NC_045512.2:20231-20266 - 20231 20266 12 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20230;36;0&s=-&p=30&e=30&w=0&f=20231-20266-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20231-20266&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.6722416667 1.0 1.41666666667 -9.65099411767 -25.6709333333 11.9986916666 NA 1.0 1.0 NA 0.0174377340062 0.0174377340062 0.333333333333 0.0 0.0 NC_045512.2:20118-20156 + 20118 20156 13 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20117;39;0&p=30&e=30&w=0&f=20118-20156", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20118-20156&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.6853615385 1.0 0.923076923077 -14.8258083334 -8.99846923077 -4.68689230773 NA 0.950909978838 0.399781865538 NA 1.0 0.390682077161 0.282051282051 1.3 0.717948717949 NC_045512.2:11167-11214 + 11167 11214 16 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;11166;48;0&p=30&e=30&w=0&f=11167-11214", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:11167-11214&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.6903625 1.0 1.0 -13.6903625 -13.71758125 0.02721875 NA 0.8539378154 1.0 NA 0.820465570568 0.688683053882 0.333333333333 0.0 0.0 NC_045512.2:3362-3391 - 3362 3391 10 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3361;30;0&s=-&p=30&e=30&w=0&f=3362-3391-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3362-3391&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.69793 1.0 1.2 -11.4149416667 -19.06093 5.363 NA 0.649770470454 0.974706169624 NA 0.094488035162 0.0174377340062 0.2 0.0 0.0 NC_045512.2:5837-5920 - 5837 5920 28 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5836;84;0&s=-&p=30&e=30&w=0&f=5837-5920-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5837-5920&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.7044607143 1.0 1.4880952381 -9.20939760001 -19.8986 6.1941392857 NA 0.86057300993 0.400651147648 NA 0.927677030767 0.366257528895 0.309523809524 0.509090909091 0.0357142857143 NC_045512.2:20153-20260 + 20153 20260 36 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20152;108;0&p=30&e=30&w=0&f=20153-20260", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20153-20260&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.7125444444 1.0 1.42592592593 -9.61658961036 -11.338175 -2.3743694444 NA 0.364759889305 0.255018720495 NA 0.867608660264 0.0 0.305555555556 0.0 0.0 NC_045512.2:19679-19738 + 19679 19738 20 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19678;60;0&p=30&e=30&w=0&f=19679-19738", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19679-19738&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.714115 1.0 1.51666666667 -9.04227362637 -13.78831 0.074195 NA 0.670844864073 0.343053882468 NA 0.858258180042 0.343053882468 0.333333333333 0.0 0.0 NC_045512.2:6224-6283 - 6224 6283 20 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6223;60;0&s=-&p=30&e=30&w=0&f=6224-6283-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6224-6283&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.71668 0.9813 1.52858602682 -8.97344327328 -20.28952 6.57284 NA 0.566576591242 0.912111346248 NA 0.651196483803 0.355660100928 0.316666666667 0.714285714286 0.0 NC_045512.2:4268-4303 - 4268 4303 12 Maximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4267;36;0&s=-&p=30&e=30&w=0&f=4268-4303-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4268-4303&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.7220166667 1.0 1.38888888889 -9.87985200002 -18.0264916667 4.30447499997 NA 0.094488035162 0.706439850236 NA 1.0 0.094488035162 0.444444444444 0.0 0.0 NC_045512.2:12529-12579 + 12529 12579 17 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12528;51;0&p=30&e=30&w=0&f=12529-12579", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12529-12579&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.7280058824 1.0 1.39215686275 -9.86096197186 -18.8126411765 5.08463529407 NA 0.962279016767 0.600699983721 NA 0.452648543057 0.44354875468 0.392156862745 0.0 0.0 NC_045512.2:15308-15403 + 15308 15403 32 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15307;96;0&p=30&e=30&w=0&f=15308-15403", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15308-15403&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.729896875 1.0 0.75 -18.3065291667 -11.052409375 -2.6774875 NA 1.0 0.630349991861 NA 0.457799120951 0.237646101253 0.416666666667 0.736572890026 0.40625 NC_045512.2:15905-15952 + 15905 15952 16 Maximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15904;48;0&p=30&e=30&w=0&f=15905-15952", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15905-15952&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.7302 1.0 1.20833333333 -11.3629241379 -8.7116625 -5.0185375 NA 1.0 1.0 NA 1.0 1.0 0.4375 0.0 0.0 NC_045512.2:10005-10112 + 10005 10112 36 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10004;108;0&p=30&e=30&w=0&f=10005-10112", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10005-10112&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.7346916667 1.0 1.0462962963 -13.1269619469 -13.8539444444 0.119252777744 0.968227250529 0.539195832655 0.890405339411 0.510307667264 1.0 0.539195832655 0.416666666667 0.0 0.25 NC_045512.2:10611-10667 + 10611 10667 19 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10610;57;0&p=30&e=30&w=0&f=10611-10667", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10611-10667&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.7368526316 1.0 1.10526315789 -12.4285809524 -8.06525789474 -5.67159473686 NA 0.457834934071 0.368347712844 NA 0.923818980954 0.094488035162 0.421052631579 0.395833333333 0.0 NC_045512.2:5690-5755 - 5690 5755 22 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5689;66;0&s=-&p=30&e=30&w=0&f=5690-5755-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5690-5755&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.7460363636 1.0 1.62121212121 -8.47886355138 -15.2195954545 1.47355909095 NA 0.44354875468 0.368347712844 NA 0.846732866678 0.333954094091 0.424242424242 0.0 0.181818181818 NC_045512.2:19655-19738 + 19655 19738 28 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19654;84;0&p=30&e=30&w=0&f=19655-19738", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19655-19738&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.7492107143 1.0 1.55952380952 -8.81628778627 -12.3398571429 -1.40935357144 NA 0.670844864073 0.343053882468 NA 1.0 0.343053882468 0.380952380952 0.0 0.0 NC_045512.2:19768-19905 - 19768 19905 46 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19767;138;0&s=-&p=30&e=30&w=0&f=19768-19905-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19768-19905&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.7679652174 1.0 1.52173913043 -9.04752000001 -20.8107847826 7.04281956521 0.659746052417 0.0174377340062 0.864815236855 0.0174377340062 0.890405339411 0.0174377340062 0.420289855072 0.165865384615 0.0 NC_045512.2:902-1021 - 902 1021 40 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;901;120;0&s=-&p=30&e=30&w=0&f=902-1021-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:902-1021&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.769455 1.0 1.46666666667 -9.38826477273 -15.960035 2.19058 NA 0.0894774540127 0.780234413153 NA 1.0 0.0174377340062 0.441666666667 0.703812316716 0.0 NC_045512.2:26795-26869 + 26795 26869 25 NotMaximal GUG NearCognate M =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26794;75;0&p=30&e=30&w=0&f=26795-26869", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26795-26869&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.79378 1.0 0.986666666667 -13.9801824324 -17.324332 3.530552 NA 0.274540126974 0.0174377340062 NA 1.0 0.0174377340062 0.48 0.9375 0.0 NC_045512.2:13727-13756 + 13727 13756 10 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13726;30;0&p=30&e=30&w=0&f=13727-13756", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13727-13756&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.79475 1.0 0.9 -15.3275 -7.39637 -6.39838 NA 0.948510499756 1.0 NA 0.95645124532 0.904961745076 0.266666666667 0.0 0.533333333333 NC_045512.2:15296-15403 + 15296 15403 36 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15295;108;0&p=30&e=30&w=0&f=15296-15403", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15296-15403&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.7999555556 1.0 0.777777777778 -17.7428000001 -10.9296027778 -2.87035277782 NA 1.0 0.630349991861 NA 0.776695425688 0.507221227413 0.407407407407 0.682105263158 0.361111111111 NC_045512.2:24374-24412 - 24374 24412 13 NotMaximal AUC NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24373;39;0&s=-&p=30&e=30&w=0&f=24374-24412-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24374-24412&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.8000230769 1.0 1.97435897436 -6.98962207791 -17.7256692308 3.92564615387 NA 0.653986651473 0.415520104184 NA 0.616304737099 0.264333387596 0.410256410256 0.0 0.846153846154 NC_045512.2:9939-9971 - 9939 9971 11 Maximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9938;33;0&s=-&p=30&e=30&w=0&f=9939-9971-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9939-9971&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.8077636364 1.0 0.909090909091 -15.18854 -12.0615090909 -1.74625454549 NA 0.780250691844 0.914429431874 NA 0.826540778121 0.632085300342 0.484848484848 0.515625 0.0 NC_045512.2:24509-24577 - 24509 24577 23 NotMaximal CUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24508;69;0&s=-&p=30&e=30&w=0&f=24509-24577-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24509-24577&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.8136173913 1.0 1.86956521739 -7.38867906977 -26.4120521739 12.5984347826 NA 0.590024418037 0.226869607684 NA 1.0 0.0174377340062 0.434782608696 0.33014354067 0.130434782609 NC_045512.2:18566-18613 + 18566 18613 16 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18565;48;0&p=30&e=30&w=0&f=18566-18613", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18566-18613&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.8162375 1.0 1.27083333333 -10.8717934426 -14.3724125 0.556175 NA 0.364759889305 1.0 NA 0.364759889305 0.364759889305 0.4375 0.444444444444 0.0 NC_045512.2:14069-14140 + 14069 14140 24 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14068;72;0&p=30&e=30&w=0&f=14069-14140", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14069-14140&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.8212625 1.0 1.15277777778 -11.9895289157 -6.702825 -7.1184375 NA 0.546736122416 0.0174377340062 NA 1.0 0.0174377340062 0.430555555556 0.615384615385 0.0 NC_045512.2:3581-3688 - 3581 3688 36 Maximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3580;108;0&s=-&p=30&e=30&w=0&f=3581-3688-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3581-3688&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.8259944444 1.0 1.67592592593 -8.24976464086 -21.1710916667 7.34509722227 NA 0.0 0.094488035162 NA 1.0 0.0 0.37962962963 0.516746411483 0.0 NC_045512.2:7691-7825 - 7691 7825 45 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7690;135;0&s=-&p=30&e=30&w=0&f=7691-7825-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7691-7825&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.8260955556 1.0 1.65185185185 -8.37005784756 -21.35886 7.5327644444 0.567452384828 0.368347712844 0.795165228716 0.094488035162 0.912111346248 0.094488035162 0.355555555556 0.241071428571 0.0 NC_045512.2:10758-10910 - 10758 10910 51 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10757;153;0&s=-&p=30&e=30&w=0&f=10758-10910-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10758-10910&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.8360529412 1.0 1.00653594771 -13.7462084416 -13.4523960784 -0.383656862769 NA 0.548012371805 0.094488035162 NA 0.094488035162 0.094488035162 0.372549019608 0.377777777778 0.0 NC_045512.2:17641-17685 - 17641 17685 15 Maximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17640;45;0&s=-&p=30&e=30&w=0&f=17641-17685-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17641-17685&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.8395066667 1.0 1.08888888889 -12.7097510204 -17.0117533333 3.17224666663 NA 0.873410385805 0.706439850236 NA 0.891662054371 0.663376200553 0.333333333333 0.833333333333 0.0 NC_045512.2:5268-5303 - 5268 5303 12 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5267;36;0&s=-&p=30&e=30&w=0&f=5268-5303-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5268-5303&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.8396333333 1.0 1.25 -11.0717066666 -17.394125 3.5544916667 0.094488035162 0.660696727983 0.412098323295 0.0174377340062 0.094488035162 0.0174377340062 0.416666666667 0.0 0.0 NC_045512.2:15431-15664 + 15431 15664 78 Maximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15430;234;0&p=30&e=30&w=0&f=15431-15664", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15431-15664&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.8503051282 1.0 0.995726495726 -13.9097484978 -10.6253641026 -3.22494102564 NA 0.434351294156 0.0174377340062 NA 1.0 0.0174377340062 0.388888888889 0.454810495627 0.136752136752 NC_045512.2:15902-16000 - 15902 16000 33 Maximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15901;99;0&s=-&p=30&e=30&w=0&f=15902-16000-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15902-16000&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.853730303 1.0 0.89898989899 -15.4103292134 -12.3613484848 -1.49238181815 NA 1.0 0.249363503174 NA 1.0 0.249363503174 0.434343434343 0.430434782609 0.191919191919 NC_045512.2:16859-16891 + 16859 16891 11 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16858;33;0&p=30&e=30&w=0&f=16859-16891", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16859-16891&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.8553363636 1.0 0.969696969697 -14.288315625 -13.7678272727 -0.0875090908727 NA 1.0 1.0 NA 1.0 1.0 0.363636363636 0.942857142857 0.0 NC_045512.2:16061-16129 - 16061 16129 23 Maximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16060;69;0&s=-&p=30&e=30&w=0&f=16061-16129-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16061-16129&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.8633391304 1.0 0.811594202899 -17.0816142857 -14.3093217391 0.44598260873 NA 0.917548429106 0.0174377340062 NA 0.0174377340062 0.0174377340062 0.333333333333 0.0 0.0 NC_045512.2:17837-17908 + 17837 17908 24 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17836;72;0&p=30&e=30&w=0&f=17837-17908", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17837-17908&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.873425 1.0 1.125 -12.3319333333 -18.0550166667 4.18159166667 NA 0.309809539313 1.0 NA 0.95576754029 0.309809539313 0.388888888889 0.0 0.0 NC_045512.2:6261-6386 - 6261 6386 42 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6260;126;0&s=-&p=30&e=30&w=0&f=6261-6386-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6261-6386&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.877447619 0.9813 1.16463697282 -11.9156852675 -11.4593642857 -2.41808333329 NA 0.544844538499 0.444590590916 NA 0.981299039557 0.242184600358 0.412698412698 0.9375 0.388888888889 NC_045512.2:2225-2308 - 2225 2308 28 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2224;84;0&s=-&p=30&e=30&w=0&f=2225-2308-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:2225-2308&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.9067107143 1.0 2.32142857143 -5.99058307693 -22.2307178571 8.32400714284 NA 0.0883998046557 0.358977698193 NA 0.0894774540127 0.0174377340062 0.404761904762 0.307692307692 0.0 NC_045512.2:2225-2293 - 2225 2293 23 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2224;69;0&s=-&p=30&e=30&w=0&f=2225-2293-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:2225-2293&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.9151652174 1.0 2.24637681159 -6.19449290323 -23.7956434783 9.88047826086 NA 0.0883998046557 0.56744912909 NA 0.094488035162 0.0883998046557 0.434782608696 0.345 0.0 NC_045512.2:15011-15055 + 15011 15055 15 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15010;45;0&p=30&e=30&w=0&f=15011-15055", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15011-15055&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.9232333333 1.0 0.933333333333 -14.91775 -9.54462666667 -4.37860666663 NA 0.912111346248 0.706439850236 NA 1.0 0.706439850236 0.355555555556 1.63636363636 0.0 NC_045512.2:16547-16600 + 16547 16600 18 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16546;54;0&p=30&e=30&w=0&f=16547-16600", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16547-16600&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.9240888889 1.0 0.833333333333 -16.7089066667 -9.82647222222 -4.09761666668 NA 0.0174377340062 0.0174377340062 NA 0.878118183298 0.0174377340062 0.37037037037 0.0 0.0 NC_045512.2:24854-24943 - 24854 24943 30 NotMaximal AUC NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24853;90;0&s=-&p=30&e=30&w=0&f=24854-24943-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24854-24943&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.9317866667 1.0 1.68888888889 -8.24908421055 -24.75055 10.8187633333 NA 0.0174377340062 0.355158717239 NA 0.970643008302 0.0174377340062 0.355555555556 0.0 0.466666666667 NC_045512.2:14381-14425 + 14381 14425 15 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14380;45;0&p=30&e=30&w=0&f=14381-14425", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14381-14425&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.93292 1.0 1.11111111111 -12.539628 -12.99362 -0.9393 0.990900211623 0.706439850236 1.0 0.697340061859 1.0 0.706439850236 0.4 0.0 0.0 NC_045512.2:10065-10127 - 10065 10127 21 Maximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10064;63;0&s=-&p=30&e=30&w=0&f=10065-10127-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10065-10127&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.9345428571 1.0 0.904761904762 -15.4013368421 -11.3609714286 -2.57357142853 NA 1.0 0.220058603288 NA 0.343053882468 0.0 0.396825396825 0.0 0.222222222222 NC_045512.2:6841-6873 + 6841 6873 11 Maximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6840;33;0&p=30&e=30&w=0&f=6841-6873", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6841-6873&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.9393090909 1.0 1.36363636364 -10.22216 -20.546 6.6066909091 NA 0.706439850236 0.390053719681 NA 0.450434641055 0.094488035162 0.363636363636 0.942857142857 0.606060606061 NC_045512.2:16513-16557 - 16513 16557 15 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16512;45;0&s=-&p=30&e=30&w=0&f=16513-16557-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16513-16557&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.9430066667 1.0 1.24444444444 -11.2042017857 -21.2905266667 7.34751999997 NA 0.656496825655 1.0 NA 0.973905258017 0.630402083672 0.266666666667 1.40625 0.0 NC_045512.2:27835-27885 - 27835 27885 17 NotMaximal AGG NearCognate ORF7b =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27834;51;0&s=-&p=30&e=30&w=0&f=27835-27885-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27835-27885&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.9442117647 0.9194 1.60579264681 -8.6836938707 -14.3613411765 0.417129411771 NA 1.0 0.694077812144 NA 0.094488035162 0.094488035162 0.392156862745 0.53125 0.0 NC_045512.2:19258-19335 - 19258 19335 26 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19257;78;0&s=-&p=30&e=30&w=0&f=19258-19335-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19258-19335&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.9451769231 1.0 1.51282051282 -9.2179983051 -19.4666423077 5.52146538459 NA 0.499531173694 0.343053882468 NA 0.937473547127 0.343053882468 0.397435897436 0.0 0.0 NC_045512.2:7437-7466 + 7437 7466 10 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7436;30;0&p=30&e=30&w=0&f=7437-7466", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7437-7466&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.95373 1.0 1.16666666667 -11.96034 -6.5752 -7.37853 NA 0.094488035162 1.0 NA 0.703239459547 0.094488035162 0.3 0.0 0.0 NC_045512.2:17289-17327 + 17289 17327 13 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17288;39;0&p=30&e=30&w=0&f=17289-17327", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17289-17327&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.9549 1.0 0.948717948718 -14.7092189189 -12.4390384615 -1.51586153846 NA 0.546527755168 0.852456454501 NA 0.449311411363 0.285827771447 0.333333333333 0.0 0.0 NC_045512.2:15917-15952 + 15917 15952 12 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15916;36;0&p=30&e=30&w=0&f=15917-15952", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15917-15952&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.9558416667 1.0 1.19444444444 -11.6839604651 -10.4873 -3.4685416667 0.547514243855 1.0 1.0 0.547514243855 1.0 1.0 0.444444444444 0.0 0.0 NC_045512.2:14021-14053 + 14021 14053 11 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14020;33;0&p=30&e=30&w=0&f=14021-14053", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14021-14053&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.9581727273 1.0 1.27272727273 -10.9671357143 -8.41215454545 -5.54601818185 1.0 0.70035161973 0.44354875468 0.0 1.0 0.0 0.454545454545 0.66 0.0 NC_045512.2:9033-9098 - 9033 9098 22 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9032;66;0&s=-&p=30&e=30&w=0&f=9033-9098-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9033-9098&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.9601363636 1.0 0.984848484848 -14.1749076923 -14.7583181818 0.798181818218 NA 1.0 0.0 NA 1.0 0.0 0.378787878788 0.0 0.0 NC_045512.2:7629-7706 + 7629 7706 26 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7628;78;0&p=30&e=30&w=0&f=7629-7706", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7629-7706&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.9602692308 1.0 1.17948717949 -11.8358804348 -10.2498269231 -3.71044230772 NA 0.390053719681 0.855441966466 NA 1.0 0.390053719681 0.371794871795 0.393939393939 0.0 NC_045512.2:16055-16102 + 16055 16102 16 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16054;48;0&p=30&e=30&w=0&f=16055-16102", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16055-16102&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.96103125 1.0 0.8125 -17.1828076923 -9.41969375 -4.5413375 NA 0.0174377340062 1.0 NA 0.753967117044 0.0174377340062 0.333333333333 0.0 0.0 NC_045512.2:24854-24976 - 24854 24976 41 NotMaximal AUA NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24853;123;0&s=-&p=30&e=30&w=0&f=24854-24976-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24854-24976&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.9632756098 1.0 1.73170731707 -8.06330000003 -26.6804878049 12.7172121951 NA 0.0174377340062 0.355158717239 NA 0.83362200879 0.0174377340062 0.341463414634 0.0 0.536585365854 NC_045512.2:20986-21087 - 20986 21087 34 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20985;102;0&s=-&p=30&e=30&w=0&f=20986-21087-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20986-21087&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.9671029412 1.0 1.45098039216 -9.62597635137 -20.6297705882 6.66266764704 NA 0.390053719681 0.219124206414 NA 0.902627380759 0.0174377340062 0.313725490196 0.404761904762 0.0 NC_045512.2:21277-21357 - 21277 21357 27 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21276;81;0&s=-&p=30&e=30&w=0&f=21277-21357-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21277-21357&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.9747888889 1.0 1.67901234568 -8.32321985295 -23.8291555556 9.85436666666 NA 0.994966628683 0.965332899235 NA 0.628712355527 0.605521732053 0.345679012346 0.866310160428 0.0 NC_045512.2:27899-27952 + 27899 27952 18 NotMaximal AUU NearCognate ORF8 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27898;54;0&p=30&e=30&w=0&f=27899-27952", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27899-27952&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.9843888889 0.6946 4.86731485335 -2.87312189785 -17.6007055556 3.61631666666 NA 0.094488035162 0.648360735797 NA 0.265632427153 0.085388246785 0.351851851852 0.0 0.574074074074 NC_045512.2:5309-5344 - 5309 5344 12 Maximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5308;36;0&s=-&p=30&e=30&w=0&f=5309-5344-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5309-5344&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.985325 1.0 1.66666666667 -8.391195 -14.64355 0.658225 NA 0.673322480873 0.672834120137 NA 0.266534266645 0.220058603288 0.361111111111 0.0 0.0 NC_045512.2:23541-23621 + 23541 23621 27 NotMaximal AUG Canonical S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23540;81;0&p=30&e=30&w=0&f=23541-23621", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23541-23621&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -13.9910740741 0.8672 1.82971323467 -7.64659390826 -13.231062963 -0.760011111137 0.935145694286 0.322445059417 0.912111346248 0.314260133485 1.0 0.322445059417 0.493827160494 0.818181818182 0.654320987654 NC_045512.2:4028-4057 - 4028 4057 10 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4027;30;0&s=-&p=30&e=30&w=0&f=4028-4057-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4028-4057&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -13.99389 1.0 1.76666666667 -7.92106981132 -19.93797 5.94408 0.364759889305 0.438704216181 0.876008464919 0.0174377340062 0.390053719681 0.094488035162 0.266666666667 0.0 0.0 NC_045512.2:26520-26573 - 26520 26573 18 NotMaximal AAG NearCognate M =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26519;54;0&s=-&p=30&e=30&w=0&f=26520-26573-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26520-26573&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.0046 0.9995 2.7244330299 -5.1403722706 -32.7368277778 18.7322277778 NA 0.094488035162 0.68114601986 NA 0.630874165717 0.0174377340062 0.444444444444 0.755244755245 0.0 NC_045512.2:19682-19738 + 19682 19738 19 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19681;57;0&p=30&e=30&w=0&f=19682-19738", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19682-19738&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.0050894737 1.0 1.47368421053 -9.50345357144 -14.4979 0.4928105263 NA 0.670844864073 0.343053882468 NA 0.650291388572 0.0174377340062 0.315789473684 0.0 0.0 NC_045512.2:27914-27952 + 27914 27952 13 NotMaximal AGG NearCognate ORF8 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27913;39;0&p=30&e=30&w=0&f=27914-27952", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27914-27952&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.0094384615 0.6913 6.33751586397 -2.21055674845 -16.3692615385 2.35982307696 NA 0.094488035162 0.648360735797 NA 0.337737261924 0.094488035162 0.410256410256 0.0 0.410256410256 NC_045512.2:26087-26137 - 26087 26137 17 NotMaximal UUG NearCognate ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26086;51;0&s=-&p=30&e=30&w=0&f=26087-26137-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26087-26137&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.0109176471 0.9628 2.06724808398 -6.77756954072 -14.5891705882 0.578252941135 NA 0.706439850236 0.368347712844 NA 1.0 0.094488035162 0.333333333333 0.0 0.823529411765 NC_045512.2:28762-28839 + 28762 28839 26 Maximal AGG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28761;78;0&p=30&e=30&w=0&f=28762-28839", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28762-28839&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.0121153846 1.0 0.948717948718 -14.769527027 -10.49305 -3.5190653846 NA 1.0 0.855441966466 NA 1.0 0.855441966466 0.538461538462 0.709090909091 0.0 NC_045512.2:5844-5894 + 5844 5894 17 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5843;51;0&p=30&e=30&w=0&f=5844-5894", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5844-5894&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.0130235294 1.0 1.13725490196 -12.3217965517 -11.0336470588 -2.97937647058 NA 0.368347712844 0.468842585056 NA 1.0 0.359247924467 0.352941176471 0.662337662338 0.0 NC_045512.2:16802-16891 - 16802 16891 30 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16801;90;0&s=-&p=30&e=30&w=0&f=16802-16891-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16802-16891&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.01332 1.0 0.8 -17.51665 -16.08331 2.06999 NA 0.808660263715 0.0174377340062 NA 0.607403548755 0.0 0.355555555556 0.364372469636 0.0 NC_045512.2:28962-29081 + 28962 29081 40 Maximal UUG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28961;120;0&p=30&e=30&w=0&f=28962-29081", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28962-29081&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.016375 0.9977 1.15913631145 -12.0920851686 -11.0668025 -2.9495725 NA 0.0174377340062 0.92602637148 NA 0.752352270877 0.0174377340062 0.441666666667 0.342857142857 0.0 NC_045512.2:15365-15403 + 15365 15403 13 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15364;39;0&p=30&e=30&w=0&f=15365-15403", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15365-15403&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.0165153846 1.0 0.923076923077 -15.1845583333 -16.8153846154 2.79886923078 NA 1.0 1.0 NA 1.0 1.0 0.384615384615 1.39285714286 0.435897435897 NC_045512.2:3206-3235 - 3206 3235 10 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3205;30;0&s=-&p=30&e=30&w=0&f=3206-3235-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3206-3235&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.01898 0.6836 2.9620465599 -4.73286956046 -20.98636 6.96738 NA 0.094488035162 0.865899397688 NA 0.094488035162 0.094488035162 0.366666666667 0.0 0.0 NC_045512.2:17237-17272 - 17237 17272 12 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17236;36;0&s=-&p=30&e=30&w=0&f=17237-17272-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17237-17272&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.019625 1.0 0.944444444444 -14.8443088235 -17.6828333333 3.66320833333 NA 0.706439850236 1.0 NA 0.890405339411 0.706439850236 0.416666666667 1.33333333333 0.0 NC_045512.2:3581-3685 - 3581 3685 35 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3580;105;0&s=-&p=30&e=30&w=0&f=3581-3685-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3581-3685&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.02846 1.0 1.69523809524 -8.27521516854 -21.8456142857 7.81715428571 NA 0.0 0.094488035162 NA 0.094488035162 0.0 0.371428571429 0.552631578947 0.0 NC_045512.2:9249-9326 + 9249 9326 26 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9248;78;0&p=30&e=30&w=0&f=9249-9326", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9249-9326&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.0291346154 1.0 1.28205128205 -10.942725 -10.2159884615 -3.81314615386 NA 0.094488035162 1.0 NA 0.556122415758 0.0174377340062 0.371794871795 0.0 0.0 NC_045512.2:14063-14140 + 14063 14140 26 Maximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14062;78;0&p=30&e=30&w=0&f=14063-14140", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14063-14140&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.0515461538 1.0 1.15384615385 -12.1780066666 -6.09270769231 -7.95883846149 NA 0.546736122416 0.0174377340062 NA 0.874348038418 0.0174377340062 0.410256410256 0.619047619048 0.0 NC_045512.2:8412-8489 + 8412 8489 26 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8411;78;0&p=30&e=30&w=0&f=8412-8489", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8412-8489&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.0563038462 1.0 1.32051282051 -10.6445796117 -14.41925 0.3629461538 NA 0.755041510663 1.0 NA 1.0 0.755041510663 0.307692307692 1.09090909091 0.0 NC_045512.2:20953-20982 - 20953 20982 10 Maximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20952;30;0&s=-&p=30&e=30&w=0&f=20953-20982-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20953-20982&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.06071 1.0 1.4 -10.0433642857 -23.99958 9.93887 NA 0.812804818493 0.966960768354 NA 0.994989418851 0.812804818493 0.366666666667 0.0 0.0 NC_045512.2:10353-10421 - 10353 10421 23 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10352;69;0&s=-&p=30&e=30&w=0&f=10353-10421-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10353-10421&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.0611521739 1.0 0.95652173913 -14.7002954545 -11.164126087 -2.89702608694 0.67105323132 0.568217483314 1.0 0.27465733355 1.0 0.568217483314 0.376811594203 0.408284023669 0.0 NC_045512.2:1346-1387 - 1346 1387 14 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1345;42;0&s=-&p=30&e=30&w=0&f=1346-1387-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1346-1387&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.0642285714 1.0 1.57142857143 -8.94996363635 -16.7893071429 2.72507857146 NA 0.912111346248 1.0 NA 1.0 0.912111346248 0.380952380952 0.0 0.357142857143 NC_045512.2:4666-4704 + 4666 4704 13 Maximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4665;39;0&p=30&e=30&w=0&f=4666-4704", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4666-4704&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.0778 1.0 1.4358974359 -9.80418214286 -14.5629923077 0.485192307692 NA 0.499042812958 0.49007325411 NA 0.0174377340062 0.0174377340062 0.435897435897 0.0 0.0 NC_045512.2:16460-16600 + 16460 16600 47 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16459;141;0&p=30&e=30&w=0&f=16460-16600", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16460-16600&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.0931468085 1.0 0.921985815603 -15.2856438461 -10.4181468085 -3.67499999999 NA 0.0174377340062 0.0174377340062 NA 0.840947419827 0.0174377340062 0.333333333333 0.261111111111 0.191489361702 NC_045512.2:15605-15664 + 15605 15664 20 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15604;60;0&p=30&e=30&w=0&f=15605-15664", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15605-15664&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.095865 1.0 1.13333333333 -12.4375279412 -10.29753 -3.798335 NA 0.434351294156 0.944587335178 NA 0.890109067231 0.434351294156 0.333333333333 0.0 0.0 NC_045512.2:24509-24583 - 24509 24583 25 NotMaximal AUA NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24508;75;0&s=-&p=30&e=30&w=0&f=24509-24583-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24509-24583&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.097864 1.0 1.78666666667 -7.89059552239 -25.590264 11.4924 NA 0.590024418037 0.226869607684 NA 0.997883770145 0.0174377340062 0.413333333333 0.328947368421 0.2 NC_045512.2:20914-20949 - 20914 20949 12 Maximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20913;36;0&s=-&p=30&e=30&w=0&f=20914-20949-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20914-20949&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.1092083333 1.0 1.33333333333 -10.58190625 -23.3350666667 9.22585833337 NA 0.364759889305 0.333954094091 NA 0.98892723425 0.0 0.555555555556 1.125 0.0 NC_045512.2:20771-20815 - 20771 20815 15 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20770;45;0&s=-&p=30&e=30&w=0&f=20771-20815-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20771-20815&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.1239733333 1.0 0.666666666667 -21.18596 -9.73773333333 -4.38623999997 NA 0.094488035162 0.906918443757 NA 0.837639589777 0.0 0.333333333333 0.803571428571 0.6 NC_045512.2:12960-13070 - 12960 13070 37 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12959;111;0&s=-&p=30&e=30&w=0&f=12960-13070-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12960-13070&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.1269837838 1.0 1.0 -14.1269837838 -14.9729837838 0.845999999984 NA 0.890405339411 0.355660100928 NA 1.0 0.0 0.396396396396 0.229813664596 0.432432432432 NC_045512.2:7691-7774 - 7691 7774 28 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7690;84;0&s=-&p=30&e=30&w=0&f=7691-7774-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7691-7774&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.1282214286 1.0 1.75 -8.07326938777 -22.8642464286 8.73602499997 NA 0.368347712844 0.795165228716 NA 0.322910629985 0.094488035162 0.369047619048 0.358974358974 0.0 NC_045512.2:10758-10913 - 10758 10913 52 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10757;156;0&s=-&p=30&e=30&w=0&f=10758-10913-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10758-10913&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.1306134615 1.0 1.03205128205 -13.6917745341 -13.3805653846 -0.750048076885 NA 0.548012371805 0.094488035162 NA 0.094488035162 0.094488035162 0.365384615385 0.385185185185 0.0 NC_045512.2:12960-13079 - 12960 13079 40 Maximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12959;120;0&s=-&p=30&e=30&w=0&f=12960-13079-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12960-13079&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.133325 1.0 1.08333333333 -13.0461461538 -15.67561 1.542285 NA 0.890405339411 0.355660100928 NA 1.0 0.0 0.4 0.208695652174 0.4 NC_045512.2:21277-21318 - 21277 21318 14 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21276;42;0&s=-&p=30&e=30&w=0&f=21277-21318-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21277-21318&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.1421714286 1.0 2.07142857143 -6.82725517243 -26.8741285714 12.7319571428 NA 0.994966628683 0.965332899235 NA 0.60974116881 0.566329155136 0.357142857143 1.5 0.0 NC_045512.2:14018-14053 + 14018 14053 12 Maximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14017;36;0&p=30&e=30&w=0&f=14018-14053", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14018-14053&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.1423 1.0 1.25 -11.31384 -7.55866666667 -6.58363333333 NA 0.70035161973 0.44354875468 NA 0.455953117369 0.0 0.472222222222 0.6 0.0 NC_045512.2:9243-9326 + 9243 9326 28 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9242;84;0&p=30&e=30&w=0&f=9243-9326", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9243-9326&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.1521785714 1.0 1.32142857143 -10.7097567567 -10.2484821429 -3.90369642854 NA 0.094488035162 0.964483151555 NA 1.0 0.094488035162 0.380952380952 0.0 0.0 NC_045512.2:27611-27712 + 27611 27712 34 Maximal ACG NearCognate ORF7a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27610;102;0&p=30&e=30&w=0&f=27611-27712", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27611-27712&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.1524294118 1.0 1.72549019608 -8.20197613638 -11.4015264706 -2.75090294121 NA 0.706439850236 0.706439850236 NA 0.815536382875 0.6315708937 0.392156862745 0.782608695652 0.0 NC_045512.2:7235-7336 - 7235 7336 34 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7234;102;0&s=-&p=30&e=30&w=0&f=7235-7336-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7235-7336&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.1568647059 1.0 1.30392156863 -10.8571443609 -16.9234764706 2.76661176469 0.912111346248 0.421523685496 0.094488035162 0.094488035162 1.0 0.094488035162 0.352941176471 0.0 0.176470588235 NC_045512.2:12430-12495 + 12430 12495 22 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12429;66;0&p=30&e=30&w=0&f=12430-12495", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12430-12495&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.1582136364 1.0 0.924242424242 -15.3187229509 -14.3585636364 0.200349999964 NA 0.343053882468 0.343053882468 NA 1.0 0.343053882468 0.393939393939 0.0 0.333333333333 NC_045512.2:13715-13756 + 13715 13756 14 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13714;42;0&p=30&e=30&w=0&f=13715-13756", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13715-13756&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.1698928571 1.0 1.02380952381 -13.8403604651 -7.02815 -7.1417428571 NA 0.948510499756 1.0 NA 0.463805958001 0.463805958001 0.333333333333 0.0 0.380952380952 NC_045512.2:6261-6404 - 6261 6404 48 Maximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6260;144;0&s=-&p=30&e=30&w=0&f=6261-6404-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6261-6404&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.1708729167 0.9813 1.21013060457 -11.7102012487 -10.9645916667 -3.20628125003 NA 0.544844538499 0.444590590916 NA 0.293726192414 0.085388246785 0.416666666667 0.964285714286 0.465277777778 NC_045512.2:5361-5408 + 5361 5408 16 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5360;48;0&p=30&e=30&w=0&f=5361-5408", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5361-5408&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.17975 1.0 1.0 -14.17975 -10.67318125 -3.50656875 NA 0.0894774540127 1.0 NA 0.943245971024 0.0803776656357 0.4375 0.0 0.0 NC_045512.2:18563-18619 - 18563 18619 19 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18562;57;0&s=-&p=30&e=30&w=0&f=18563-18619-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18563-18619&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.1804 1.0 1.29824561404 -10.9227405405 -11.5911 -2.5893 0.706439850236 0.0174377340062 0.0174377340062 0.0174377340062 1.0 0.0174377340062 0.40350877193 0.438461538462 0.0 NC_045512.2:4804-4848 + 4804 4848 15 Maximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4803;45;0&p=30&e=30&w=0&f=4804-4848", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4804-4848&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.1853866667 1.0 1.44444444444 -9.82065230772 -20.6965066667 6.51111999997 NA 0.625264528732 0.094488035162 NA 1.0 0.094488035162 0.355555555556 0.0 0.0 NC_045512.2:11022-11105 - 11022 11105 28 Maximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;11021;84;0&s=-&p=30&e=30&w=0&f=11022-11105-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:11022-11105&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.1927678571 1.0 1.05952380952 -13.3954213483 -12.6219321429 -1.57083571424 NA 0.498420966954 0.865111509035 NA 1.0 0.267455640566 0.297619047619 0.0 0.0 NC_045512.2:10353-10418 - 10353 10418 22 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10352;66;0&s=-&p=30&e=30&w=0&f=10353-10418-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10353-10418&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.1960363636 1.0 0.939393939394 -15.1119096774 -11.8076909091 -2.38834545451 NA 0.568217483314 1.0 NA 1.0 0.568217483314 0.378787878788 0.423076923077 0.0 NC_045512.2:16211-16267 - 16211 16267 19 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16210;57;0&s=-&p=30&e=30&w=0&f=16211-16267-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16211-16267&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.2003894737 1.0 0.964912280702 -14.7167672727 -13.2450368421 -0.955352631595 NA 0.746716587986 1.0 NA 1.0 0.746716587986 0.473684210526 0.313186813187 0.0 NC_045512.2:9948-10112 + 9948 10112 55 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9947;165;0&p=30&e=30&w=0&f=9948-10112", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9948-10112&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.2009727273 1.0 1.11515151515 -12.7345679348 -13.6014290909 -0.599543636391 NA 0.539195832655 0.0174377340062 NA 1.0 0.0 0.430303030303 0.131160572337 0.163636363636 NC_045512.2:20039-20083 + 20039 20083 15 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20038;45;0&p=30&e=30&w=0&f=20039-20083", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20039-20083&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.2039533333 1.0 1.35555555556 -10.4783262295 -18.4810333333 4.27708000003 NA 0.0174377340062 0.0174377340062 NA 0.975494058278 0.0174377340062 0.355555555556 0.0 0.0 NC_045512.2:6072-6122 - 6072 6122 17 Maximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6071;51;0&s=-&p=30&e=30&w=0&f=6072-6122-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6072-6122&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.2045352941 0.9813 1.43866920171 -9.8733852627 -18.9518294118 4.74729411766 NA 0.407305876608 0.32035161973 NA 0.832065765912 0.0174377340062 0.313725490196 0.0 0.0 NC_045512.2:2225-2377 - 2225 2377 51 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2224;153;0&s=-&p=30&e=30&w=0&f=2225-2377-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:2225-2377&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.2091470588 1.0 2.35294117647 -6.03888749999 -25.5786 11.3694529412 NA 0.0883998046557 0.085388246785 NA 0.575936838678 0.0793000162787 0.372549019608 0.198701298701 0.0 NC_045512.2:17203-17241 - 17203 17241 13 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17202;39;0&s=-&p=30&e=30&w=0&f=17203-17241-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17203-17241&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.2092923077 1.0 1.0 -14.2092923077 -21.1427307692 6.93343846153 NA 0.761784144555 1.0 NA 0.979550708123 0.761784144555 0.230769230769 0.0 0.0 NC_045512.2:555-683 + 555 683 43 NotMaximal ACG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;554;129;0&p=30&e=30&w=0&f=555-683", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:555-683&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.2128395349 1.0 1.16279069767 -12.223042 -9.33730232558 -4.87553720932 NA 1.0 0.398267947257 NA 0.785062672961 0.272055998698 0.527131782946 1.02652519894 0.627906976744 NC_045512.2:27788-27850 + 27788 27850 21 Maximal GUG NearCognate ORF7b =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27787;63;0&p=30&e=30&w=0&f=27788-27850", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27788-27850&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.2157619048 1.0 0.888888888889 -15.9927321429 -13.4692047619 -0.746557142895 NA 0.770034185252 1.0 NA 0.890405339411 0.56436268924 0.31746031746 0.0 0.492063492063 NC_045512.2:10758-10898 - 10758 10898 47 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10757;141;0&s=-&p=30&e=30&w=0&f=10758-10898-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10758-10898&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.2226106383 1.0 1.01418439716 -14.023693007 -12.8217276596 -1.40088297873 NA 0.548012371805 0.390053719681 NA 0.094488035162 0.094488035162 0.36170212766 0.433846153846 0.0 NC_045512.2:26777-26869 + 26777 26869 31 NotMaximal UUG NearCognate M =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26776;93;0&p=30&e=30&w=0&f=26777-26869", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26777-26869&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.2303483871 1.0 1.04301075269 -13.6435298969 -17.9951935484 3.76484516129 NA 0.274540126974 0.0174377340062 NA 1.0 0.0174377340062 0.462365591398 0.805194805195 0.0 NC_045512.2:3132-3203 + 3132 3203 24 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3131;72;0&p=30&e=30&w=0&f=3132-3203", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3132-3203&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.2417875 0.9519 2.38419807442 -5.97340785263 -15.139675 0.8978875 NA 0.094488035162 0.854504313853 NA 0.90802213902 0.085388246785 0.430555555556 0.0 0.0 NC_045512.2:28977-29081 + 28977 29081 35 NotMaximal CUG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28976;105;0&p=30&e=30&w=0&f=28977-29081", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28977-29081&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.2446371429 0.9973 1.22948911784 -11.5858179923 -11.6647028571 -2.57993428576 NA 0.0174377340062 1.0 NA 0.706439850236 0.0174377340062 0.457142857143 0.37037037037 0.0 NC_045512.2:902-1012 - 902 1012 37 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;901;111;0&s=-&p=30&e=30&w=0&f=902-1012-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:902-1012&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.2462297297 1.0 1.43243243243 -9.94548113205 -16.4304432432 2.18421351354 NA 0.0894774540127 0.780234413153 NA 0.986114276412 0.0174377340062 0.441441441441 0.755102040816 0.0 NC_045512.2:26744-26869 + 26744 26869 42 NotMaximal UUG NearCognate M =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26743;126;0&p=30&e=30&w=0&f=26744-26869", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26744-26869&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.2568595238 1.0 1.0873015873 -13.1121481752 -17.4857857143 3.22892619049 NA 0.274540126974 0.0174377340062 NA 1.0 0.0174377340062 0.47619047619 0.840934371524 0.0 NC_045512.2:21142-21189 - 21142 21189 16 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21141;48;0&s=-&p=30&e=30&w=0&f=21142-21189-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21142-21189&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.26531875 1.0 1.72916666667 -8.24982289157 -18.60560625 4.3402875 NA 0.658831189972 0.890405339411 NA 0.87713495035 0.645560800912 0.416666666667 0.5 0.0 NC_045512.2:14411-14476 - 14411 14476 22 Maximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14410;66;0&s=-&p=30&e=30&w=0&f=14411-14476-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14411-14476&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.2686363636 1.0 0.818181818182 -17.4394444444 -11.4239090909 -2.84472727269 NA 0.891134624776 0.884317108904 NA 0.647654240599 0.620589288621 0.348484848485 0.0 0.0 NC_045512.2:10804-10902 + 10804 10902 33 Maximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10803;99;0&p=30&e=30&w=0&f=10804-10902", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10804-10902&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.2733515152 1.0 1.11111111111 -12.8460163637 -13.7735060606 -0.499845454594 NA 1.0 0.890405339411 NA 0.401810190461 0.401810190461 0.383838383838 0.5625 0.0 NC_045512.2:26632-26664 + 26632 26664 11 Maximal UUG NearCognate M =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26631;33;0&p=30&e=30&w=0&f=26632-26664", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26632-26664&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.2772 1.0 1.0303030303 -13.8572823529 -2.55154545455 -11.7256545455 NA 1.0 1.0 NA 1.0 1.0 0.363636363636 0.0 0.0 NC_045512.2:5489-5653 - 5489 5653 55 Maximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5488;165;0&s=-&p=30&e=30&w=0&f=5489-5653-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5489-5653&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.2804363636 1.0 1.69696969697 -8.41525714284 -19.9246690909 5.64423272731 NA 0.724479895816 0.368347712844 NA 0.650291388572 0.094488035162 0.387878787879 0.334008097166 0.0 NC_045512.2:11728-11763 + 11728 11763 12 Maximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;11727;36;0&p=30&e=30&w=0&f=11728-11763", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:11728-11763&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.2817416667 1.0 1.33333333333 -10.71130625 -18.8769333333 4.59519166663 NA 1.0 0.225990558359 NA 0.601598567475 0.216890769982 0.416666666667 0.0 0.0 NC_045512.2:25104-25139 + 25104 25139 12 Maximal AAG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25103;36;0&p=30&e=30&w=0&f=25104-25139", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25104-25139&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.284975 1.0 1.16666666667 -12.2442642857 -8.85013333333 -5.43484166667 NA 1.0 0.883444571056 NA 1.0 0.883444571056 0.416666666667 0.642857142857 1.0 NC_045512.2:26456-26551 + 26456 26551 32 NotMaximal CUG NearCognate E,M =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26455;96;0&p=30&e=30&w=0&f=26456-26551", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26456-26551&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.286709375 0.9668 1.21008231293 -11.8063946744 -15.291778125 1.00506875 NA 0.703805958001 0.521409734657 NA 1.0 0.521409734657 0.333333333333 1.12941176471 0.0 NC_045512.2:19006-19044 - 19006 19044 13 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19005;39;0&s=-&p=30&e=30&w=0&f=19006-19044-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19006-19044&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.2901230769 1.0 1.35897435897 -10.5153735849 -21.9698692308 7.67974615387 NA 0.225990558359 0.950157903305 NA 0.0174377340062 0.0174377340062 0.461538461538 0.541666666667 0.0 NC_045512.2:7235-7357 - 7235 7357 41 Maximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7234;123;0&s=-&p=30&e=30&w=0&f=7235-7357-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7235-7357&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.2925731707 1.0 1.26829268293 -11.2691442307 -16.4066341463 2.11406097564 NA 0.421523685496 0.094488035162 NA 0.713915025232 0.094488035162 0.333333333333 0.0 0.219512195122 NC_045512.2:5147-5185 - 5147 5185 13 Maximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5146;39;0&s=-&p=30&e=30&w=0&f=5147-5185-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5147-5185&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.3013230769 1.0 1.46153846154 -9.78511578946 -17.5504153846 3.24909230772 NA 0.813755494058 0.890405339411 NA 0.383965489175 0.0883998046557 0.461538461538 0.4875 0.0 NC_045512.2:3581-3682 - 3581 3682 34 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3580;102;0&s=-&p=30&e=30&w=0&f=3581-3682-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3581-3682&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.3089382353 1.0 1.69607843137 -8.43648381503 -22.1213382353 7.81239999999 NA 0.0 0.094488035162 NA 0.840146508221 0.0 0.362745098039 0.59649122807 0.0 NC_045512.2:15206-15244 + 15206 15244 13 Maximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15205;39;0&p=30&e=30&w=0&f=15206-15244", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15206-15244&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.3089461538 1.0 0.871794871795 -16.4132029411 -7.56578461538 -6.74316153842 NA 1.0 0.694152694123 NA 0.685052905746 0.685052905746 0.410256410256 0.0 0.102564102564 NC_045512.2:20986-21135 - 20986 21135 50 Maximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20985;150;0&s=-&p=30&e=30&w=0&f=20986-21135-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20986-21135&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.312196 1.0 1.38666666667 -10.3212951923 -20.0006 5.688404 NA 0.390053719681 0.0174377340062 NA 1.0 0.0174377340062 0.32 0.26455026455 0.0 NC_045512.2:14288-14425 + 14288 14425 46 Maximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14287;138;0&p=30&e=30&w=0&f=14288-14425", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14288-14425&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.3155630435 1.0 0.891304347826 -16.0613634147 -9.81617826087 -4.49938478263 NA 0.706439850236 0.874751749959 NA 0.278473058766 0.278473058766 0.369565217391 0.214285714286 0.0 NC_045512.2:7309-7341 + 7309 7341 11 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7308;33;0&p=30&e=30&w=0&f=7309-7341", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7309-7341&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.3158454545 1.0 1.09090909091 -13.1228583333 -7.86167272727 -6.45417272723 NA 0.457834934071 0.589617450757 NA 0.390053719681 0.390053719681 0.242424242424 0.0 0.69696969697 NC_045512.2:14072-14140 + 14072 14140 23 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14071;69;0&p=30&e=30&w=0&f=14072-14140", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14072-14140&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.3305086957 1.0 1.15942028986 -12.36006375 -7.15872173913 -7.17178695657 NA 0.546736122416 0.0174377340062 NA 1.0 0.0174377340062 0.434782608696 0.62443438914 0.0 NC_045512.2:13005-13085 + 13005 13085 27 Maximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13004;81;0&p=30&e=30&w=0&f=13005-13085", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13005-13085&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.3318333333 1.0 1.06172839506 -13.4985872093 -11.0192518519 -3.31258148145 NA 0.789656519616 1.0 NA 1.0 0.789656519616 0.444444444444 0.253125 0.172839506173 NC_045512.2:8736-8822 + 8736 8822 29 Maximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8735;87;0&p=30&e=30&w=0&f=8736-8822", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8736-8822&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.3347344828 1.0 1.41379310345 -10.1392024391 -11.6692655172 -2.66546896556 NA 0.548302132509 0.996933094579 NA 1.0 0.545235227088 0.390804597701 0.302083333333 0.0 NC_045512.2:15005-15055 + 15005 15055 17 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15004;51;0&p=30&e=30&w=0&f=15005-15055", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15005-15055&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.3360529412 1.0 0.941176470588 -15.23205625 -8.46511176471 -5.87094117649 NA 0.912111346248 0.706439850236 NA 1.0 0.706439850236 0.372549019608 1.21428571429 0.0 NC_045512.2:14411-14458 - 14411 14458 16 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14410;48;0&s=-&p=30&e=30&w=0&f=14411-14458-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14411-14458&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.33655625 1.0 0.833333333333 -17.2038675 -11.15704375 -3.1795125 0.364759889305 0.891134624776 0.884317108904 0.0174377340062 1.0 0.679374898258 0.354166666667 0.0 0.0 NC_045512.2:20796-20846 + 20796 20846 17 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20795;51;0&p=30&e=30&w=0&f=20796-20846", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20796-20846&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.3614705882 1.0 1.11764705882 -12.8497368421 -19.1047882353 4.74331764709 NA 0.655930327202 1.0 NA 0.914683379456 0.61221878561 0.294117647059 0.0 0.313725490196 NC_045512.2:13898-13936 + 13898 13936 13 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13897;39;0&p=30&e=30&w=0&f=13898-13936", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13898-13936&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.3622076923 1.0 1.05128205128 -13.6616121951 -7.76677692308 -6.59543076922 0.985866840306 0.912111346248 1.0 0.897978186554 1.0 0.912111346248 0.25641025641 0.0 0.0512820512821 NC_045512.2:8240-8284 - 8240 8284 15 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8239;45;0&s=-&p=30&e=30&w=0&f=8240-8284-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8240-8284&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.3638133333 1.0 1.62222222222 -8.85440547943 -23.9469666667 9.58315333337 NA 0.813755494058 0.704766400781 NA 0.0174377340062 0.0174377340062 0.333333333333 0.803571428571 0.0 NC_045512.2:13703-13756 + 13703 13756 18 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13702;54;0&p=30&e=30&w=0&f=13703-13756", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13703-13756&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.3719444444 1.0 1.09259259259 -13.1539830508 -9.45694444444 -4.91499999996 NA 0.948510499756 0.673322480873 NA 0.452648543057 0.0174377340062 0.314814814815 0.0 0.296296296296 NC_045512.2:16248-16298 + 16248 16298 17 Maximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16247;51;0&p=30&e=30&w=0&f=16248-16298", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16248-16298&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.3719529412 1.0 1.37254901961 -10.4709942857 -11.5882 -2.7837529412 NA 0.0174377340062 0.409956047534 NA 1.0 0.0174377340062 0.392156862745 0.515151515152 0.0 NC_045512.2:3362-3466 - 3362 3466 35 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3361;105;0&s=-&p=30&e=30&w=0&f=3362-3466-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3362-3466&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.3804771429 1.0 1.7619047619 -8.16189243246 -23.6517542857 9.27127714281 1.0 0.649770470454 0.808442129253 0.624476640078 1.0 0.624476640078 0.32380952381 0.0 0.0 NC_045512.2:11157-11204 + 11157 11204 16 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;11156;48;0&p=30&e=30&w=0&f=11157-11204", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:11157-11204&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.38304375 1.0 1.02083333333 -14.0895122449 -16.4203 2.03725625 NA 0.094488035162 0.685990558359 NA 0.997646101253 0.094488035162 0.375 0.0 0.0 NC_045512.2:576-683 + 576 683 36 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;575;108;0&p=30&e=30&w=0&f=576-683", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:576-683&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.3842777778 1.0 1.11111111111 -12.94585 -9.855575 -4.5287027778 NA 1.0 0.701429269087 NA 0.468842585056 0.0803776656357 0.518518518519 0.975483870968 0.592592592593 NC_045512.2:8633-8662 - 8633 8662 10 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8632;30;0&s=-&p=30&e=30&w=0&f=8633-8662-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8633-8662&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.38438 1.0 2.03333333333 -7.0742852459 -18.97277 4.58839 0.947546801237 0.094488035162 0.543516197298 0.0174377340062 1.0 0.094488035162 0.333333333333 0.0 0.0 NC_045512.2:18623-18658 - 18623 18658 12 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18622;36;0&s=-&p=30&e=30&w=0&f=18623-18658-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18623-18658&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.3857583333 1.0 1.02777777778 -13.996954054 -14.4925833333 0.106825000033 NA 0.0174377340062 0.0174377340062 NA 1.0 0.0174377340062 0.416666666667 0.666666666667 0.0 NC_045512.2:14945-14995 + 14945 14995 17 Maximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14944;51;0&p=30&e=30&w=0&f=14945-14995", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14945-14995&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.3926470588 1.0 0.78431372549 -18.350625 -9.38997058824 -5.00267647056 NA 1.0 1.0 NA 0.865111509035 0.865111509035 0.313725490196 0.0 0.0 NC_045512.2:20960-20989 - 20960 20989 10 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20959;30;0&s=-&p=30&e=30&w=0&f=20960-20989-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20960-20989&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.39563 1.0 1.16666666667 -12.3391114286 -18.2092 3.81357 NA 0.67340061859 0.390053719681 NA 0.94439850236 0.0174377340062 0.366666666667 0.0 0.0 NC_045512.2:24245-24367 - 24245 24367 41 Maximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24244;123;0&s=-&p=30&e=30&w=0&f=24245-24367-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24245-24367&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.3958902439 1.0 1.39024390244 -10.3549385965 -22.5577317073 8.16184146342 NA 0.249246296598 0.886817515872 NA 1.0 0.249246296598 0.325203252033 0.0 0.390243902439 NC_045512.2:17441-17470 + 17441 17470 10 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17440;30;0&p=30&e=30&w=0&f=17441-17470", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17441-17470&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.39799 1.0 1.46666666667 -9.81681136364 -7.50203 -6.89596 NA 0.783490151392 1.0 NA 0.757287970047 0.50613706658 0.533333333333 0.625 0.0 NC_045512.2:6224-6274 - 6224 6274 17 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6223;51;0&s=-&p=30&e=30&w=0&f=6224-6274-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6224-6274&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.4034411765 0.9813 1.59852133524 -9.01047790792 -19.7227941176 5.31935294115 NA 0.566576591242 0.912111346248 NA 0.287104020837 0.26682077161 0.333333333333 0.728571428571 0.0 NC_045512.2:22618-22650 + 22618 22650 11 NotMaximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22617;33;0&p=30&e=30&w=0&f=22618-22650", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22618-22650&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.4071181818 1.0 2.54545454545 -5.65993928571 -29.4835909091 15.0764727273 NA 0.519348852352 0.285651961582 NA 1.0 0.285651961582 0.454545454545 0.0 0.0 NC_045512.2:11022-11096 - 11022 11096 25 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;11021;75;0&s=-&p=30&e=30&w=0&f=11022-11096-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:11022-11096&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.4091 1.0 1.10666666667 -13.0202710843 -12.757572 -1.651528 NA 0.498420966954 0.890405339411 NA 1.0 0.292749470943 0.306666666667 0.0 0.0 NC_045512.2:13688-13756 + 13688 13756 23 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13687;69;0&p=30&e=30&w=0&f=13688-13756", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13688-13756&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.4099 1.0 1.14492753623 -12.5858620253 -8.68464347826 -5.72525652174 NA 0.948510499756 0.673322480873 NA 1.0 0.654950349992 0.275362318841 0.0 0.231884057971 NC_045512.2:11154-11210 - 11154 11210 19 Maximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;11153;57;0&s=-&p=30&e=30&w=0&f=11154-11210-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:11154-11210&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.4122 1.0 0.929824561404 -15.4999132075 -14.6876052632 0.275405263158 NA 1.0 0.965606381247 NA 1.0 0.965606381247 0.368421052632 0.0 0.0 NC_045512.2:17078-17119 + 17078 17119 14 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17077;42;0&p=30&e=30&w=0&f=17078-17119", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17078-17119&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.4199071429 1.0 1.0 -14.4199071429 -9.28009285714 -5.13981428576 NA 0.0174377340062 1.0 NA 1.0 0.0174377340062 0.5 0.0 0.0 NC_045512.2:11148-11204 + 11148 11204 19 Maximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;11147;57;0&p=30&e=30&w=0&f=11148-11204", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:11148-11204&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.4253684211 1.0 1.0 -14.4253684211 -15.0239578947 0.598589473637 NA 0.094488035162 0.685990558359 NA 0.833735959629 0.094488035162 0.368421052632 0.0 0.0 NC_045512.2:9291-9326 + 9291 9326 12 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9290;36;0&p=30&e=30&w=0&f=9291-9326", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9291-9326&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.4263583333 1.0 1.44444444444 -9.98747884613 -14.949175 0.5228166667 NA 0.094488035162 1.0 NA 0.477942373433 0.094488035162 0.361111111111 0.0 0.0 NC_045512.2:20696-20764 - 20696 20764 23 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20695;69;0&s=-&p=30&e=30&w=0&f=20696-20764-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20696-20764&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.4272782609 1.0 1.17391304348 -12.2899037037 -18.0239826087 3.5967043478 0.0894774540127 0.671710890444 0.452648543057 0.0174377340062 0.094488035162 0.0174377340062 0.304347826087 0.0 0.434782608696 NC_045512.2:9990-10022 - 9990 10022 11 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9989;33;0&s=-&p=30&e=30&w=0&f=9990-10022-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9990-10022&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.4363090909 1.0 1.42424242424 -10.1361319149 -23.1558636364 8.71955454546 NA 1.0 1.0 NA 1.0 1.0 0.424242424242 0.0 0.0 NC_045512.2:8480-8566 - 8480 8566 29 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8479;87;0&s=-&p=30&e=30&w=0&f=8480-8566-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8480-8566&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.4364 1.0 1.24137931034 -11.6293222222 -19.1865931034 4.75019310345 NA 0.0 0.094488035162 NA 0.0174377340062 0.0 0.32183908046 0.0 0.0 NC_045512.2:429-530 + 429 530 34 Maximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;428;102;0&p=30&e=30&w=0&f=429-530", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:429-530&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.4371117647 1.0 1.99019607843 -7.25411527093 -10.2894617647 -4.14764999999 NA 0.27465733355 0.612954582452 NA 0.368347712844 0.0174377340062 0.460784313725 0.741818181818 0.323529411765 NC_045512.2:27100-27138 + 27100 27138 13 NotMaximal UUG NearCognate M =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27099;39;0&p=30&e=30&w=0&f=27100-27138", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27100-27138&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.4446923077 1.0 1.07692307692 -13.4129285714 -5.58225384615 -8.86243846155 NA 1.0 1.0 NA 1.0 1.0 0.410256410256 0.609375 0.512820512821 NC_045512.2:14078-14140 + 14078 14140 21 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14077;63;0&p=30&e=30&w=0&f=14078-14140", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14078-14140&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.4462428571 1.0 1.1746031746 -12.2988283783 -5.75017142857 -8.69607142853 1.0 0.546736122416 0.452648543057 0.452648543057 1.0 0.452648543057 0.444444444444 0.673796791444 0.0 NC_045512.2:4044-4100 + 4044 4100 19 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4043;57;0&p=30&e=30&w=0&f=4044-4100", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4044-4100&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.4485421053 0.9954 1.99428950202 -7.2449572094 -9.84974210526 -4.59880000004 0.975494058278 0.424678495849 0.725866840306 0.094488035162 1.0 0.094488035162 0.40350877193 0.0 0.0 NC_045512.2:9569-9619 - 9569 9619 17 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9568;51;0&s=-&p=30&e=30&w=0&f=9569-9619-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9569-9619&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.4494823529 1.0 1.13725490196 -12.7055793103 -18.0075647059 3.55808235298 NA 0.477942373433 0.592974116881 NA 1.0 0.390053719681 0.274509803922 0.0 0.764705882353 NC_045512.2:14306-14425 + 14306 14425 40 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14305;120;0&p=30&e=30&w=0&f=14306-14425", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14306-14425&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.4570675 1.0 0.883333333333 -16.3664915094 -10.61397 -3.8430975 NA 0.706439850236 0.874751749959 NA 0.993661077649 0.684447338434 0.391666666667 0.0 0.0 NC_045512.2:27572-27643 - 27572 27643 24 Maximal GUG NearCognate ORF7a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27571;72;0&s=-&p=30&e=30&w=0&f=27572-27643-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27572-27643&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.4588416667 1.0 1.56944444444 -9.21271327436 -10.2778166667 -4.18102500003 NA 0.706439850236 0.342064138043 NA 0.899286993326 0.286462640404 0.458333333333 1.08270676692 0.0 NC_045512.2:19768-20010 - 19768 20010 81 Maximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19767;243;0&s=-&p=30&e=30&w=0&f=19768-20010-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19768-20010&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.4649567901 1.0 1.48148148148 -9.76384583332 -20.3491197531 5.88416296299 NA 0.0174377340062 0.0174377340062 NA 1.0 0.0174377340062 0.40329218107 0.203773584906 0.0 NC_045512.2:902-1027 - 902 1027 42 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;901;126;0&s=-&p=30&e=30&w=0&f=902-1027-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:902-1027&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.4658309524 1.0 1.45238095238 -9.96008032788 -15.3593904762 0.89355952379 NA 0.0894774540127 0.75713495035 NA 0.368347712844 0.0174377340062 0.444444444444 0.650322580645 0.0 NC_045512.2:27662-27712 + 27662 27712 17 NotMaximal AAG NearCognate ORF7a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27661;51;0&p=30&e=30&w=0&f=27662-27712", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27662-27712&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.4673588235 1.0 2.09803921569 -6.89565700933 -10.1068 -4.3605588235 NA 0.706439850236 0.706439850236 NA 0.912111346248 0.706439850236 0.352941176471 0.62962962963 0.0 NC_045512.2:2718-2753 + 2718 2753 12 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2717;36;0&p=30&e=30&w=0&f=2718-2753", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:2718-2753&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.4746166667 1.0 1.91666666667 -7.55197391306 -15.8033083333 1.32869166663 NA 0.094488035162 0.477942373433 NA 0.962506918444 0.094488035162 0.444444444444 0.0 0.0 NC_045512.2:7626-7706 + 7626 7706 27 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7625;81;0&p=30&e=30&w=0&f=7626-7706", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7626-7706&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.4747111111 1.0 1.18518518519 -12.2130375 -10.1210222222 -4.35368888888 NA 0.390053719681 0.855441966466 NA 0.899107927723 0.390053719681 0.358024691358 0.409090909091 0.0 NC_045512.2:5268-5312 - 5268 5312 15 Maximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5267;45;0&s=-&p=30&e=30&w=0&f=5268-5312-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5268-5312&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.47794 1.0 1.35555555556 -10.680447541 -18.66192 4.18398 NA 0.660696727983 0.412098323295 NA 0.96256877747 0.367143089696 0.4 0.0 0.0 NC_045512.2:5027-5092 - 5027 5092 22 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5026;66;0&s=-&p=30&e=30&w=0&f=5027-5092-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5027-5092&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.4840454545 1.0 1.45454545455 -9.95778124997 -17.4747636364 2.99071818186 NA 0.229158391665 0.852453198763 NA 0.873423408758 0.0174377340062 0.348484848485 0.0 0.0 NC_045512.2:20696-20761 - 20696 20761 22 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20695;66;0&s=-&p=30&e=30&w=0&f=20696-20761-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20696-20761&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.4892545455 1.0 1.01515151515 -14.272997015 -18.3296227273 3.84036818177 NA 0.671710890444 0.974706169624 NA 0.364759889305 0.0174377340062 0.30303030303 0.0 0.454545454545 NC_045512.2:27250-27291 - 27250 27291 14 NotMaximal AUC NearCognate ORF6 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27249;42;0&s=-&p=30&e=30&w=0&f=27250-27291-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27250-27291&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.4912785714 1.0 1.78571428571 -8.11511599998 -21.8577285714 7.36645000003 NA 0.094488035162 0.706439850236 NA 0.877642845515 0.094488035162 0.261904761905 0.0 0.0 NC_045512.2:5027-5098 - 5027 5098 24 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5026;72;0&s=-&p=30&e=30&w=0&f=5027-5098-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5027-5098&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.4938625 1.0 1.47222222222 -9.84488773585 -18.6232041667 4.12934166667 NA 0.229158391665 0.852453198763 NA 0.094488035162 0.0174377340062 0.333333333333 0.0 0.0 NC_045512.2:11211-11243 + 11211 11243 11 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;11210;33;0&p=30&e=30&w=0&f=11211-11243", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:11211-11243&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.4974909091 1.0 0.69696969697 -20.8007478261 -6.14343636364 -8.35405454546 NA 0.706439850236 0.706439850236 NA 0.671805306853 0.378245157089 0.363636363636 0.0 0.0 NC_045512.2:24674-24703 - 24674 24703 10 NotMaximal AUA NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24673;30;0&s=-&p=30&e=30&w=0&f=24674-24703-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24674-24703&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.50699 1.0 1.36666666667 -10.6148707317 -18.2795 3.77251 NA 0.619283737587 1.0 NA 0.746224971512 0.477919583266 0.333333333333 0.0 0.7 NC_045512.2:10758-10925 - 10758 10925 56 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10757;168;0&s=-&p=30&e=30&w=0&f=10758-10925-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10758-10925&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.5123839286 1.0 1.01785714286 -14.2577807018 -14.0406267857 -0.471757142886 NA 0.548012371805 0.094488035162 NA 0.450089532802 0.094488035162 0.357142857143 0.377104377104 0.0 NC_045512.2:16541-16600 + 16541 16600 20 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16540;60;0&p=30&e=30&w=0&f=16541-16600", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16541-16600&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.51301 1.0 0.9 -16.1255666667 -10.320745 -4.192265 0.876366596126 0.0174377340062 0.0174377340062 0.0174377340062 1.0 0.0174377340062 0.35 0.0 0.0 NC_045512.2:579-683 + 579 683 35 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;578;105;0&p=30&e=30&w=0&f=579-683", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:579-683&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.51442 1.0 1.12380952381 -12.9153737288 -10.1841285714 -4.33029142857 NA 1.0 0.701429269087 NA 0.568217483314 0.269646752401 0.52380952381 0.98 0.609523809524 NC_045512.2:9951-10112 + 9951 10112 54 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9950;162;0&p=30&e=30&w=0&f=9951-10112", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9951-10112&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.5181203704 1.0 1.12962962963 -12.8521065574 -13.7950388889 -0.723081481511 NA 0.539195832655 0.0174377340062 NA 0.343053882468 0.0 0.432098765432 0.132678132678 0.166666666667 NC_045512.2:16459-16494 - 16459 16494 12 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16458;36;0&s=-&p=30&e=30&w=0&f=16459-16494-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16459-16494&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.5201333333 1.0 0.805555555556 -18.0249931034 -15.514 0.9938666667 NA 0.706439850236 0.959160019534 NA 1.0 0.66559986977 0.361111111111 0.0 0.333333333333 NC_045512.2:20986-21132 - 20986 21132 49 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20985;147;0&s=-&p=30&e=30&w=0&f=20986-21132-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20986-21132&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.5216265306 1.0 1.40816326531 -10.3124594203 -20.3786061224 5.85697959185 NA 0.390053719681 0.0174377340062 NA 0.094488035162 0.0174377340062 0.319727891156 0.272222222222 0.0 NC_045512.2:20216-20260 + 20216 20260 15 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20215;45;0&p=30&e=30&w=0&f=20216-20260", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20216-20260&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.5218066667 1.0 1.46666666667 -9.9012318182 -18.9999333333 4.47812666663 NA 0.364759889305 0.279524662217 NA 0.364759889305 0.0 0.288888888889 0.0 0.0 NC_045512.2:9121-9159 + 9121 9159 13 Maximal ACG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9120;39;0&p=30&e=30&w=0&f=9121-9159", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9121-9159&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.5275692308 1.0 1.20512820513 -12.0547914894 -17.5315307692 3.00396153843 NA 1.0 0.706439850236 NA 0.094488035162 0.094488035162 0.384615384615 0.696428571429 0.0 NC_045512.2:19676-19738 + 19676 19738 21 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19675;63;0&p=30&e=30&w=0&f=19676-19738", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19676-19738&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.5336238095 1.0 1.60317460317 -9.06552772276 -13.4254333333 -1.10819047617 NA 0.670844864073 0.343053882468 NA 0.859524662217 0.343053882468 0.349206349206 0.0 0.0 NC_045512.2:564-683 + 564 683 40 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;563;120;0&p=30&e=30&w=0&f=564-683", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:564-683&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.53786 1.0 1.14166666667 -12.7338919708 -9.84702 -4.69084 NA 1.0 0.398267947257 NA 0.094488035162 0.0894774540127 0.525 0.864197530864 0.6 NC_045512.2:15902-15943 - 15902 15943 14 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15901;42;0&s=-&p=30&e=30&w=0&f=15902-15943-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15902-15943&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.5391571429 1.0 1.02380952381 -14.2010372093 -11.2041571429 -3.33500000004 0.854494546638 1.0 1.0 0.854494546638 1.0 1.0 0.428571428571 0.0 0.0 NC_045512.2:20303-20353 + 20303 20353 17 Maximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20302;51;0&p=30&e=30&w=0&f=20303-20353", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20303-20353&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.5420882353 1.0 1.39215686275 -10.4457253521 -9.13608235294 -5.40600588236 NA 0.573947582614 1.0 NA 0.890405339411 0.464352922025 0.372549019608 1.15909090909 0.0 NC_045512.2:1476-1541 - 1476 1541 22 Maximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1475;66;0&s=-&p=30&e=30&w=0&f=1476-1541-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1476-1541&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.5438954545 1.0 1.37878787879 -10.5483197802 -20.5238727273 5.97997727277 NA 0.865111509035 0.890405339411 NA 0.094488035162 0.0174377340062 0.469696969697 0.0 0.121212121212 NC_045512.2:26856-26897 - 26856 26897 14 Maximal AUG Canonical M =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26855;42;0&s=-&p=30&e=30&w=0&f=26856-26897-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26856-26897&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.5476285714 1.0 1.61904761905 -8.98529999998 -21.3059285714 6.75830000003 0.094488035162 0.666280319062 0.912111346248 0.094488035162 0.477942373433 0.094488035162 0.404761904762 1.0 0.0 NC_045512.2:16184-16276 + 16184 16276 31 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16183;93;0&p=30&e=30&w=0&f=16184-16276", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16184-16276&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.5495032258 1.0 0.935483870968 -15.5529172414 -11.0437548387 -3.50574838709 NA 0.0174377340062 0.0894774540127 NA 0.825036627055 0.0174377340062 0.440860215054 0.222488038278 0.0 NC_045512.2:18595-18648 - 18595 18648 18 Maximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18594;54;0&s=-&p=30&e=30&w=0&f=18595-18648-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18595-18648&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.5508777778 1.0 0.888888888889 -16.3697375 -18.0870944444 3.53621666664 NA 0.276405664985 0.359221878561 NA 0.819065603126 0.0 0.388888888889 0.0 0.0 NC_045512.2:20150-20260 + 20150 20260 37 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20149;111;0&p=30&e=30&w=0&f=20150-20260", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20150-20260&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.5511162162 1.0 1.45045045045 -10.0321360248 -11.2405216216 -3.31059459458 NA 0.364759889305 0.255018720495 NA 0.769418850724 0.0 0.297297297297 0.0 0.0 NC_045512.2:18314-18364 + 18314 18364 17 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18313;51;0&p=30&e=30&w=0&f=18314-18364", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18314-18364&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.5595705882 1.0 1.17647058824 -12.375635 -7.74305882353 -6.81651176467 NA 0.890405339411 0.586592869933 NA 1.0 0.586592869933 0.450980392157 0.0 0.0 NC_045512.2:26520-26561 - 26520 26561 14 NotMaximal AAG NearCognate M =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26519;42;0&s=-&p=30&e=30&w=0&f=26520-26561-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26520-26561&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.5813857143 0.9994 2.62189008606 -5.56140236077 -29.6740785714 15.0926928571 NA 0.094488035162 0.886817515872 NA 0.653722936676 0.0 0.47619047619 0.84 0.0 NC_045512.2:27572-27634 - 27572 27634 21 NotMaximal AUC NearCognate ORF7a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27571;63;0&s=-&p=30&e=30&w=0&f=27572-27634-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27572-27634&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.5855095238 1.0 1.65079365079 -8.83545288461 -10.7068238095 -3.87868571428 NA 0.706439850236 0.342064138043 NA 0.706439850236 0.342064138043 0.460317460317 1.21153846154 0.0 NC_045512.2:19979-20011 + 19979 20011 11 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19978;33;0&p=30&e=30&w=0&f=19979-20011", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19979-20011&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.5935636364 1.0 1.18181818182 -12.3484 -8.34370909091 -6.24985454549 NA 0.623232948071 1.0 NA 0.84985186391 0.586456128927 0.393939393939 0.0 0.0 NC_045512.2:14297-14425 + 14297 14425 43 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14296;129;0&p=30&e=30&w=0&f=14297-14425", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14297-14425&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.5945 1.0 0.891472868217 -16.3712217391 -10.5833930233 -4.01110697674 NA 0.706439850236 0.874751749959 NA 0.887113788051 0.577900048836 0.364341085271 0.0 0.0 NC_045512.2:9255-9326 + 9255 9326 24 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9254;72;0&p=30&e=30&w=0&f=9255-9326", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9255-9326&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.599 1.0 1.29166666667 -11.3024516129 -11.0081708333 -3.59082916667 NA 0.094488035162 1.0 NA 0.094488035162 0.094488035162 0.375 0.0 0.0 NC_045512.2:8766-8822 + 8766 8822 19 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8765;57;0&p=30&e=30&w=0&f=8766-8822", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8766-8822&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.6001947368 1.0 1.64912280702 -8.85330957444 -13.8209789474 -0.779215789432 NA 0.548302132509 0.996933094579 NA 0.927869119323 0.512117857724 0.438596491228 0.37012987013 0.0 NC_045512.2:902-1081 - 902 1081 60 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;901;180;0&s=-&p=30&e=30&w=0&f=902-1081-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:902-1081&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.612145 1.0 1.38888888889 -10.5207444 -16.42758 1.815435 NA 0.0894774540127 0.75713495035 NA 0.094488035162 0.0174377340062 0.405555555556 0.548780487805 0.0 NC_045512.2:17354-17386 + 17354 17386 11 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17353;33;0&p=30&e=30&w=0&f=17354-17386", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17354-17386&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.6139727273 1.0 0.909090909091 -16.07537 -7.95719090909 -6.65678181821 NA 1.0 1.0 NA 0.890405339411 0.890405339411 0.272727272727 0.0 0.0 NC_045512.2:10758-10853 - 10758 10853 32 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10757;96;0&s=-&p=30&e=30&w=0&f=10758-10853-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10758-10853&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.614965625 1.0 1.02083333333 -14.3167010204 -14.0173375 -0.597628125 NA 0.548012371805 0.912111346248 NA 0.615949861631 0.390053719681 0.385416666667 0.282352941176 0.0 NC_045512.2:10402-10461 + 10402 10461 20 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10401;60;0&p=30&e=30&w=0&f=10402-10461", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10402-10461&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.617385 1.0 1.36666666667 -10.695647561 -19.787375 5.16999 NA 0.905577079603 0.421305551034 NA 1.0 0.400856259157 0.4 0.0 0.0 NC_045512.2:17153-17200 + 17153 17200 16 Maximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17152;48;0&p=30&e=30&w=0&f=17153-17200", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17153-17200&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.61769375 1.0 1.16666666667 -12.5294517857 -15.0228875 0.40519375 NA 0.890405339411 1.0 NA 0.887595637311 0.681924141299 0.479166666667 0.363636363636 0.0 NC_045512.2:15908-15952 + 15908 15952 15 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15907;45;0&p=30&e=30&w=0&f=15908-15952", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15908-15952&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.6183666667 1.0 1.22222222222 -11.9604818182 -9.32348 -5.2948866667 NA 1.0 1.0 NA 0.0174377340062 0.0174377340062 0.422222222222 0.0 0.0 NC_045512.2:23540-23605 - 23540 23605 22 NotMaximal AGG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23539;66;0&s=-&p=30&e=30&w=0&f=23540-23605-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23540-23605&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.62005 0.9495 1.75740677388 -8.31910415805 -21.0488318182 6.42878181818 NA 0.326052417386 0.333954094091 NA 0.333954094091 0.0 0.424242424242 0.336734693878 0.818181818182 NC_045512.2:15716-15763 + 15716 15763 16 Maximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15715;48;0&p=30&e=30&w=0&f=15716-15763", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15716-15763&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.62471875 1.0 1.22916666667 -11.8980762712 -5.0794625 -9.54525625 NA 1.0 1.0 NA 0.867322155299 0.867322155299 0.4375 0.436363636364 0.145833333333 NC_045512.2:9498-9545 + 9498 9545 16 Maximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9497;48;0&p=30&e=30&w=0&f=9498-9545", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9498-9545&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.63261875 1.0 1.375 -10.6419045455 -12.41875625 -2.2138625 NA 0.608230506267 0.561006023116 NA 0.626957512616 0.094488035162 0.3125 0.0 0.458333333333 NC_045512.2:21142-21180 - 21142 21180 13 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21141;39;0&s=-&p=30&e=30&w=0&f=21142-21180-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21142-21180&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.6456615385 1.0 1.97435897436 -7.41793246755 -20.1704076923 5.52474615381 1.0 0.658831189972 0.890405339411 0.658831189972 1.0 0.658831189972 0.435897435897 0.557142857143 0.0 NC_045512.2:9246-9326 + 9246 9326 27 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9245;81;0&p=30&e=30&w=0&f=9246-9326", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9246-9326&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.6558481481 1.0 1.34567901235 -10.8910431192 -9.81859259259 -4.83725555551 NA 0.094488035162 0.964483151555 NA 0.623317597265 0.094488035162 0.382716049383 0.0 0.0 NC_045512.2:17831-17908 + 17831 17908 26 Maximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17830;78;0&p=30&e=30&w=0&f=17831-17908", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17831-17908&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.6564769231 1.0 1.08974358974 -13.4494729412 -17.3015384615 2.64506153844 NA 0.309809539313 0.813446198926 NA 1.0 0.309809539313 0.397435897436 0.0 0.0 NC_045512.2:15293-15403 + 15293 15403 37 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15292;111;0&p=30&e=30&w=0&f=15293-15403", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15293-15403&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.661672973 1.0 0.81981981982 -17.8840186814 -11.0623324324 -3.59934054057 NA 1.0 0.630349991861 NA 0.736249389549 0.289148624451 0.396396396396 0.701052631579 0.351351351351 NC_045512.2:3435-3488 + 3435 3488 18 Maximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3434;54;0&p=30&e=30&w=0&f=3435-3488", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3435-3488&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.6684611111 1.0 1.27777777778 -11.4796652174 -9.53757777778 -5.13088333332 NA 0.436128927234 0.094488035162 NA 0.912111346248 0.094488035162 0.444444444444 0.0 0.0 NC_045512.2:5027-5059 - 5027 5059 11 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5026;33;0&s=-&p=30&e=30&w=0&f=5027-5059-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5027-5059&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.6697272727 1.0 1.39393939394 -10.5239347826 -20.3813636364 5.71163636366 NA 0.229158391665 0.852453198763 NA 0.810066742634 0.0174377340062 0.363636363636 0.0 0.0 NC_045512.2:9310-9348 + 9310 9348 13 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9309;39;0&p=30&e=30&w=0&f=9310-9348", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9310-9348&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.6832692308 1.0 1.61538461538 -9.08964285716 -15.6260769231 0.942807692277 NA 0.811323457594 0.336832166694 NA 0.701246947745 0.25216343806 0.358974358974 0.0 0.0 NC_045512.2:14927-14956 - 14927 14956 10 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14926;30;0&s=-&p=30&e=30&w=0&f=14927-14956-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14927-14956&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.68879 1.0 0.866666666667 -16.9486038462 -19.96369 5.2749 0.912111346248 0.917548429106 1.0 0.829659775354 1.0 0.917548429106 0.4 0.0 0.0 NC_045512.2:6647-6688 - 6647 6688 14 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6646;42;0&s=-&p=30&e=30&w=0&f=6647-6688-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6647-6688&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.6922642857 1.0 1.71428571429 -8.57048749999 -22.0787357143 7.38647142859 NA 0.0174377340062 1.0 NA 1.0 0.0174377340062 0.380952380952 0.0 0.0 NC_045512.2:27835-27876 - 27835 27876 14 NotMaximal AAG NearCognate ORF7b =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27834;42;0&s=-&p=30&e=30&w=0&f=27835-27876-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27835-27876&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.6945571429 0.9651 1.54544859011 -9.50827949691 -16.6374357143 1.94287857139 NA 1.0 0.706439850236 NA 0.706439850236 0.706439850236 0.333333333333 0.0 0.0 NC_045512.2:8415-8489 + 8415 8489 25 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8414;75;0&p=30&e=30&w=0&f=8415-8489", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8415-8489&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.703408 1.0 1.30666666667 -11.2526081633 -15.004472 0.301064 NA 0.755041510663 1.0 NA 0.393276900537 0.340371154159 0.306666666667 1.15384615385 0.0 NC_045512.2:3491-3556 - 3491 3556 22 Maximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3490;66;0&s=-&p=30&e=30&w=0&f=3491-3556-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3491-3556&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.7048818182 0.9998 2.15205550658 -6.83294727913 -22.8515545455 8.14667272725 NA 0.436128927234 0.780631613218 NA 0.739348852352 0.401735308481 0.363636363636 0.0 0.0 NC_045512.2:10672-10734 + 10672 10734 21 Maximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10671;63;0&p=30&e=30&w=0&f=10672-10734", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10672-10734&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.7049095238 1.0 1.11111111111 -13.2344185714 -19.9800809524 5.27517142858 NA 0.0174377340062 0.0174377340062 NA 1.0 0.0174377340062 0.412698412698 0.75 0.0 NC_045512.2:12960-13067 - 12960 13067 36 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12959;108;0&s=-&p=30&e=30&w=0&f=12960-13067-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12960-13067&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.7063333333 1.0 0.944444444444 -15.5714117647 -15.2264388889 0.520105555589 NA 0.890405339411 0.355660100928 NA 0.0174377340062 0.0 0.398148148148 0.234782608696 0.444444444444 NC_045512.2:25928-25975 - 25928 25975 16 NotMaximal AUU NearCognate ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25927;48;0&s=-&p=30&e=30&w=0&f=25928-25975-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25928-25975&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.70735 1.0 1.5 -9.8049 -17.27645 2.5691 NA 0.364759889305 0.712124369201 NA 0.333954094091 0.0 0.354166666667 0.0 0.0 NC_045512.2:25532-25570 - 25532 25570 13 Maximal AAG NearCognate ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25531;39;0&s=-&p=30&e=30&w=0&f=25532-25570-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25532-25570&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.7174307692 1.0 0.820512820513 -17.93686875 -11.4937153846 -3.22371538458 NA 0.427348201205 0.893413641543 NA 0.825655217321 0.427348201205 0.461538461538 0.975 1.0 NC_045512.2:28983-29081 + 28983 29081 33 NotMaximal AAG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28982;99;0&p=30&e=30&w=0&f=28983-29081", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28983-29081&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.7174393939 0.9972 1.28380158963 -11.4639516828 -11.9424393939 -2.77499999996 NA 0.0174377340062 1.0 NA 0.693169461175 0.0174377340062 0.454545454545 0.400809716599 0.0 NC_045512.2:10629-10667 + 10629 10667 13 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10628;39;0&p=30&e=30&w=0&f=10629-10667", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10629-10667&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.7197615385 1.0 1.30769230769 -11.2562882353 -11.4380076923 -3.28175384619 NA 0.457834934071 0.368347712844 NA 1.0 0.094488035162 0.384615384615 0.696428571429 0.0 NC_045512.2:8480-8569 - 8480 8569 30 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8479;90;0&s=-&p=30&e=30&w=0&f=8480-8569-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8480-8569&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.7206166667 1.0 1.25555555556 -11.7243849558 -19.2381333333 4.51751666663 NA 0.0 0.094488035162 NA 0.343053882468 0.0 0.311111111111 0.0 0.0 NC_045512.2:4103-4141 - 4103 4141 13 Maximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4102;39;0&s=-&p=30&e=30&w=0&f=4103-4141-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4103-4141&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.7219461538 1.0 1.87179487179 -7.86514931504 -16.4471230769 1.72517692312 NA 0.399384665473 1.0 NA 0.520748819795 0.0174377340062 0.358974358974 0.0 0.0 NC_045512.2:4803-4832 + 4803 4832 10 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4802;30;0&p=30&e=30&w=0&f=4803-4832", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4803-4832&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.72757 1.0 1.7 -8.66327647059 -15.46526 0.73769 NA 0.912111346248 1.0 NA 0.833735959629 0.649770470454 0.4 0.0 0.0 NC_045512.2:27541-27579 - 27541 27579 13 NotMaximal UUG NearCognate ORF7a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27540;39;0&s=-&p=30&e=30&w=0&f=27541-27579-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27541-27579&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.7354846154 1.0 1.97435897436 -7.46342727274 -22.1802 7.4447153846 NA 0.094488035162 0.477942373433 NA 0.679400944164 0.094488035162 0.384615384615 0.0 0.0 NC_045512.2:10226-10270 - 10226 10270 15 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10225;45;0&s=-&p=30&e=30&w=0&f=10226-10270-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10226-10270&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.7377866667 1.0 1.44444444444 -10.2030830769 -26.0857466667 11.34796 NA 0.368347712844 0.974706169624 NA 0.987712843887 0.343053882468 0.355555555556 0.703125 0.0 NC_045512.2:11268-11300 + 11268 11300 11 Maximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;11267;33;0&p=30&e=30&w=0&f=11268-11300", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:11268-11300&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.7405181818 1.0 1.06060606061 -13.8982028571 -10.0074727273 -4.73304545453 NA 0.094488035162 0.886817515872 NA 0.368347712844 0.0174377340062 0.333333333333 0.0 0.0 NC_045512.2:9267-9326 + 9267 9326 20 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9266;60;0&p=30&e=30&w=0&f=9267-9326", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9267-9326&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.749585 1.0 1.31666666667 -11.2022164557 -11.61476 -3.134825 NA 0.094488035162 1.0 NA 0.921351131369 0.094488035162 0.383333333333 0.0 0.0 NC_045512.2:11323-11367 + 11323 11367 15 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;11322;45;0&p=30&e=30&w=0&f=11323-11367", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:11323-11367&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.7507 1.0 1.42222222222 -10.3715859375 -12.4987 -2.252 NA 1.0 0.890405339411 NA 0.094488035162 0.094488035162 0.377777777778 0.0 0.0 NC_045512.2:29088-29144 + 29088 29144 19 Maximal AAG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29087;57;0&p=30&e=30&w=0&f=29088-29144", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29088-29144&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.7532368421 1.0 1.45614035088 -10.1317409639 -8.70869473684 -6.04454210526 NA 1.0 1.0 NA 1.0 1.0 0.508771929825 0.548076923077 0.0 NC_045512.2:15719-15763 + 15719 15763 15 NotMaximal ACG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15718;45;0&p=30&e=30&w=0&f=15719-15763", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15719-15763&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.7537133333 1.0 1.24444444444 -11.8556625 -5.54804666667 -9.20566666663 NA 1.0 1.0 NA 1.0 1.0 0.422222222222 0.5 0.155555555556 NC_045512.2:20986-21015 - 20986 21015 10 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20985;30;0&s=-&p=30&e=30&w=0&f=20986-21015-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20986-21015&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.75825 1.0 1.33333333333 -11.0686875 -19.00936 4.25111 0.688067719355 0.390053719681 0.226869607684 0.0174377340062 1.0 0.0174377340062 0.366666666667 0.0 0.0 NC_045512.2:19258-19311 - 19258 19311 18 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19257;54;0&s=-&p=30&e=30&w=0&f=19258-19311-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19258-19311&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.7608777778 1.0 1.61111111111 -9.16192413794 -19.2451777778 4.48429999998 0.977317271691 0.499531173694 0.343053882468 0.343053882468 1.0 0.343053882468 0.37037037037 0.0 0.0 NC_045512.2:15446-15664 + 15446 15664 73 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15445;219;0&p=30&e=30&w=0&f=15446-15664", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15446-15664&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.7618684932 1.0 1.0502283105 -14.055866087 -11.0193082192 -3.74256027402 NA 0.434351294156 0.0174377340062 NA 0.977971675077 0.0174377340062 0.388127853881 0.485587583149 0.0776255707763 NC_045512.2:25142-25171 - 25142 25171 10 NotMaximal AAG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25141;30;0&s=-&p=30&e=30&w=0&f=25142-25171-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25142-25171&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.76209 1.0 1.16666666667 -12.65322 -19.08929 4.3272 NA 1.0 0.450779749308 NA 0.651082532964 0.450779749308 0.366666666667 1.25 1.0 NC_045512.2:14894-14932 + 14894 14932 13 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14893;39;0&p=30&e=30&w=0&f=14894-14932", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14894-14932&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.7795923077 1.0 0.74358974359 -19.8760034483 -9.1855 -5.5940923077 NA 0.385043138532 0.457834934071 NA 0.912111346248 0.385043138532 0.435897435897 0.557142857143 0.0 NC_045512.2:567-683 + 567 683 39 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;566;117;0&p=30&e=30&w=0&f=567-683", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:567-683&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.7804333333 1.0 1.16239316239 -12.7155198529 -10.0999102564 -4.68052307689 NA 1.0 0.398267947257 NA 0.094488035162 0.0894774540127 0.521367521368 0.892156862745 0.589743589744 NC_045512.2:13907-13936 + 13907 13936 10 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13906;30;0&p=30&e=30&w=0&f=13907-13936", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13907-13936&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.78078 1.0 0.833333333333 -17.736936 -9.08984 -5.69094 NA 0.912111346248 1.0 NA 1.0 0.912111346248 0.266666666667 0.0 0.0 NC_045512.2:16379-16414 + 16379 16414 12 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16378;36;0&p=30&e=30&w=0&f=16379-16414", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16379-16414&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.7902083333 1.0 1.13888888889 -12.9865243902 -9.72940833333 -5.06079999997 1.0 0.987712843887 0.993911769494 0.981624613381 1.0 0.981624613381 0.444444444444 0.0 0.305555555556 NC_045512.2:9294-9326 + 9294 9326 11 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9293;33;0&p=30&e=30&w=0&f=9294-9326", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9294-9326&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.8209636364 1.0 1.36363636364 -10.8687066667 -15.4891272727 0.668163636327 NA 0.094488035162 1.0 NA 0.927677030767 0.094488035162 0.393939393939 0.0 0.0 NC_045512.2:27572-27637 - 27572 27637 22 NotMaximal CUG NearCognate ORF7a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27571;66;0&s=-&p=30&e=30&w=0&f=27572-27637-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27572-27637&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.8252318182 1.0 1.65151515152 -8.97674587157 -10.2882954545 -4.53693636365 NA 0.706439850236 0.342064138043 NA 0.891264854306 0.342064138043 0.469696969697 1.10924369748 0.0 NC_045512.2:12960-13064 - 12960 13064 35 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12959;105;0&s=-&p=30&e=30&w=0&f=12960-13064-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12960-13064&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.8279371429 1.0 0.952380952381 -15.569334 -15.2546342857 0.426697142814 NA 0.890405339411 0.355660100928 NA 0.0 0.0 0.409523809524 0.228260869565 0.457142857143 NC_045512.2:432-530 + 432 530 33 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;431;99;0&p=30&e=30&w=0&f=432-530", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:432-530&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.8286030303 1.0 2.0 -7.41430151515 -10.7728484848 -4.05575454545 NA 0.27465733355 0.612954582452 NA 0.267445873352 0.0174377340062 0.464646464646 0.75 0.333333333333 NC_045512.2:24838-24891 + 24838 24891 18 Maximal AGG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24837;54;0&p=30&e=30&w=0&f=24838-24891", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24838-24891&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.8328388889 1.0 1.40740740741 -10.5391223684 -10.3175777778 -4.51526111112 NA 0.0883998046557 0.567328666775 NA 1.0 0.0883998046557 0.351851851852 0.0 0.851851851852 NC_045512.2:7632-7706 + 7632 7706 25 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7631;75;0&p=30&e=30&w=0&f=7632-7706", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7632-7706&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.83556 1.0 1.22666666667 -12.0942065217 -10.455376 -4.380184 NA 0.390053719681 0.855441966466 NA 0.737620055348 0.380953931304 0.36 0.426136363636 0.0 NC_045512.2:16193-16276 + 16193 16276 28 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16192;84;0&p=30&e=30&w=0&f=16193-16276", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16193-16276&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.8382714286 1.0 0.964285714286 -15.3878370371 -11.7256571429 -3.11261428574 NA 0.0174377340062 0.0894774540127 NA 0.890405339411 0.0174377340062 0.440476190476 0.245614035088 0.0 NC_045512.2:3098-3127 - 3098 3127 10 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3097;30;0&s=-&p=30&e=30&w=0&f=3098-3127-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3098-3127&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.83852 0.9712 2.03457088589 -7.29319391272 -13.66808 -1.17044 NA 0.085388246785 1.0 NA 0.696910304412 0.0 0.333333333333 0.0 0.0 NC_045512.2:13913-14059 - 13913 14059 49 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13912;147;0&s=-&p=30&e=30&w=0&f=13913-14059-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13913-14059&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.8402816327 1.0 1.07482993197 -13.8070974684 -16.1303346939 1.29005306118 0.509975581963 0.997997720983 0.285827771447 0.0174377340062 1.0 0.285827771447 0.387755102041 1.11363636364 0.0 NC_045512.2:8757-8822 + 8757 8822 22 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8756;66;0&p=30&e=30&w=0&f=8757-8822", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8757-8822&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.84615 1.0 1.62121212121 -9.15743831776 -12.8825818182 -1.96356818182 0.837287970047 0.548302132509 0.996933094579 0.488783981768 0.912111346248 0.545235227088 0.424242424242 0.34375 0.0 NC_045512.2:7272-7301 - 7272 7301 10 Maximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7271;30;0&s=-&p=30&e=30&w=0&f=7272-7301-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7272-7301&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.8464 1.0 1.7 -8.73317647059 -23.89517 9.04877 NA 0.368347712844 0.667048673287 NA 0.477942373433 0.368347712844 0.4 0.0 0.0 NC_045512.2:17666-17713 + 17666 17713 16 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17665;48;0&p=30&e=30&w=0&f=17666-17713", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17666-17713&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.8509875 1.0 0.9375 -15.8410533333 -8.3348 -6.5161875 NA 0.706439850236 0.463805958001 NA 1.0 0.463805958001 0.416666666667 0.48 0.0 NC_045512.2:9972-10112 + 9972 10112 47 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9971;141;0&p=30&e=30&w=0&f=9972-10112", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9972-10112&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.8585595745 1.0 1.15602836879 -12.853109816 -14.2705914894 -0.587968085138 NA 0.539195832655 0.469031417874 NA 1.0 0.360198600033 0.425531914894 0.0 0.191489361702 NC_045512.2:21277-21312 - 21277 21312 12 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21276;36;0&s=-&p=30&e=30&w=0&f=21277-21312-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21277-21312&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.874975 1.0 2.13888888889 -6.95453376623 -27.3538166667 12.4788416667 NA 0.994966628683 0.965332899235 NA 0.706439850236 0.666739378154 0.388888888889 1.4693877551 0.0 NC_045512.2:6159-6347 + 6159 6347 63 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6158;189;0&p=30&e=30&w=0&f=6159-6347", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6159-6347&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.8757222222 0.9813 1.12689410796 -13.2006389218 -10.5722809524 -4.30344126982 NA 0.363337131695 0.479023278528 NA 0.368347712844 0.343053882468 0.354497354497 0.505347593583 0.380952380952 NC_045512.2:18323-18364 + 18323 18364 14 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18322;42;0&p=30&e=30&w=0&f=18323-18364", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18323-18364&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.8760928571 1.0 1.28571428571 -11.5702944444 -8.64338571429 -6.23270714281 1.0 0.890405339411 0.586592869933 0.586592869933 1.0 0.586592869933 0.404761904762 0.0 0.0 NC_045512.2:315-392 - 315 392 26 Maximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;314;78;0&s=-&p=30&e=30&w=0&f=315-392-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:315-392&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.8858038462 1.0 1.15384615385 -12.90103 -14.7149692308 -0.170834615431 NA 1.0 0.458622822725 NA 1.0 0.458622822725 0.551282051282 1.05882352941 0.25641025641 NC_045512.2:16499-16600 + 16499 16600 34 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16498;102;0&p=30&e=30&w=0&f=16499-16600", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16499-16600&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.8897205882 1.0 0.980392156863 -15.187515 -10.0587411765 -4.83097941173 NA 0.0174377340062 0.0174377340062 NA 1.0 0.0174377340062 0.313725490196 0.441558441558 0.107843137255 NC_045512.2:945-1094 + 945 1094 50 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;944;150;0&p=30&e=30&w=0&f=945-1094", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:945-1094&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.905552 1.0 1.28 -11.6449625 -15.263686 0.358134 NA 0.390053719681 0.88767051929 NA 0.989838840957 0.094488035162 0.386666666667 0.540865384615 0.0 NC_045512.2:19258-19305 - 19258 19305 16 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19257;48;0&s=-&p=30&e=30&w=0&f=19258-19305-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19258-19305&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.913825 1.0 1.66666666667 -8.948295 -19.33565 4.421825 NA 0.499531173694 0.343053882468 NA 0.842396223344 0.343053882468 0.395833333333 0.0 0.0 NC_045512.2:10758-10856 - 10758 10856 33 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10757;99;0&s=-&p=30&e=30&w=0&f=10758-10856-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10758-10856&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.9214969697 1.0 1.09090909091 -13.6780388889 -13.9583 -0.9631969697 0.085388246785 0.548012371805 0.912111346248 0.085388246785 0.946879374898 0.460123718053 0.383838383838 0.27731092437 0.0 NC_045512.2:5489-5641 - 5489 5641 51 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5488;153;0&s=-&p=30&e=30&w=0&f=5489-5641-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5489-5641&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.9277372549 1.0 1.7908496732 -8.33556131387 -20.3455333333 5.41779607843 NA 0.724479895816 0.368347712844 NA 0.815246622172 0.094488035162 0.398692810458 0.344594594595 0.0 NC_045512.2:2225-2365 - 2225 2365 47 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2224;141;0&s=-&p=30&e=30&w=0&f=2225-2365-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:2225-2365&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.9283595745 1.0 2.39007092199 -6.24599020773 -26.0165297872 11.0881702127 NA 0.0883998046557 0.316760540453 NA 0.094488035162 0.0793000162787 0.375886524823 0.213636363636 0.0 NC_045512.2:9308-9340 - 9308 9340 11 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9307;33;0&s=-&p=30&e=30&w=0&f=9308-9340-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9308-9340&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.9293636364 1.0 1.33333333333 -11.1970227273 -14.6382636364 -0.291100000036 NA 0.598694448966 0.692554126648 NA 0.673322480873 0.551691356015 0.424242424242 0.0 0.0 NC_045512.2:26459-26551 + 26459 26551 31 NotMaximal AUC NearCognate E,M =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26458;93;0&p=30&e=30&w=0&f=26459-26551", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26459-26551&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.9298741935 0.9657 1.2276118499 -12.161722123 -15.7230548387 0.79318064521 NA 0.703805958001 0.521409734657 NA 0.912111346248 0.521409734657 0.322580645161 1.24553571429 0.0 NC_045512.2:19768-20004 - 19768 20004 79 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19767;237;0&s=-&p=30&e=30&w=0&f=19768-20004-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19768-20004&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.9352341772 1.0 1.49789029536 -9.97084647886 -20.6531696203 5.71793544305 NA 0.0174377340062 0.0174377340062 NA 0.452648543057 0.0174377340062 0.400843881857 0.211229946524 0.0 NC_045512.2:8760-8822 + 8760 8822 21 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8759;63;0&p=30&e=30&w=0&f=8760-8822", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8760-8822&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.940047619 1.0 1.60317460317 -9.31903960393 -13.8385714286 -1.10147619043 NA 0.548302132509 0.996933094579 NA 1.0 0.545235227088 0.428571428571 0.35 0.0 NC_045512.2:25906-25947 - 25906 25947 14 NotMaximal CUG NearCognate ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25905;42;0&s=-&p=30&e=30&w=0&f=25906-25947-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25906-25947&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.9466 1.0 2.42857142857 -6.15448235294 -20.6873357143 5.74073571429 NA 0.407996093114 0.613075044766 NA 1.0 0.294221064626 0.452380952381 0.0 0.0 NC_045512.2:4205-4240 - 4205 4240 12 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4204;36;0&s=-&p=30&e=30&w=0&f=4205-4240-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4205-4240&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.9604083333 1.0 2.08333333333 -7.18099599998 -16.175575 1.2151666667 NA 0.226869607684 0.520748819795 NA 0.981627869119 0.0174377340062 0.388888888889 0.75 0.0 NC_045512.2:5562-5654 + 5562 5654 31 Maximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5561;93;0&p=30&e=30&w=0&f=5562-5654", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5562-5654&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.9648225806 1.0 1.60215053763 -9.34045973152 -9.27528709677 -5.68953548383 NA 0.990021162299 0.368347712844 NA 1.0 0.363337131695 0.354838709677 0.344444444444 0.0 NC_045512.2:10293-10397 + 10293 10397 35 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10292;105;0&p=30&e=30&w=0&f=10293-10397", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10293-10397&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.96492 1.0 1.01904761905 -14.6852018692 -11.0769685714 -3.88795142857 NA 0.921299039557 0.877717727495 NA 0.986729610939 0.785746377991 0.361904761905 0.291666666667 0.0 NC_045512.2:5739-5780 + 5739 5780 14 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5738;42;0&p=30&e=30&w=0&f=5739-5780", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5739-5780&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.9734642857 1.0 0.97619047619 -15.3386707317 -7.98762857143 -6.98583571427 NA 0.68944489663 1.0 NA 1.0 0.68944489663 0.380952380952 0.0 0.642857142857 NC_045512.2:6162-6347 + 6162 6347 62 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6161;186;0&p=30&e=30&w=0&f=6162-6347", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6162-6347&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -14.9844870968 0.9813 1.13411221345 -13.2125259909 -10.8059516129 -4.1785354839 0.981299039557 0.363337131695 0.479023278528 0.343053882468 0.981299039557 0.343053882468 0.349462365591 0.529411764706 0.370967741935 NC_045512.2:902-1066 - 902 1066 55 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;901;165;0&s=-&p=30&e=30&w=0&f=902-1066-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:902-1066&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -14.9868527273 1.0 1.43636363636 -10.4338848101 -17.0200327273 2.03317999997 NA 0.0894774540127 0.75713495035 NA 0.094488035162 0.0174377340062 0.4 0.611111111111 0.0 NC_045512.2:12516-12569 + 12516 12569 18 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12515;54;0&p=30&e=30&w=0&f=12516-12569", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12516-12569&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.0039611111 1.0 1.14814814815 -13.067966129 -13.3215666667 -1.68239444443 NA 0.307139833957 1.0 NA 1.0 0.307139833957 0.407407407407 0.0 0.203703703704 NC_045512.2:9963-10112 + 9963 10112 50 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9962;150;0&p=30&e=30&w=0&f=9963-10112", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9963-10112&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.0067 1.0 1.17333333333 -12.7898011364 -14.370752 -0.635948 NA 0.539195832655 0.0174377340062 NA 0.289412339248 0.0 0.426666666667 0.147058823529 0.18 NC_045512.2:19931-19972 - 19931 19972 14 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19930;42;0&s=-&p=30&e=30&w=0&f=19931-19972-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19931-19972&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -15.0077642857 1.0 1.33333333333 -11.2558232143 -13.7602642857 -1.24749999999 NA 0.219560475338 0.0174377340062 NA 1.0 0.0174377340062 0.428571428571 0.525 0.0 NC_045512.2:17681-17713 + 17681 17713 11 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17680;33;0&p=30&e=30&w=0&f=17681-17713", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17681-17713&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.0103727273 1.0 0.878787878788 -17.0807689655 -9.27667272727 -5.73370000003 1.0 0.706439850236 0.993911769494 0.70035161973 1.0 0.70035161973 0.363636363636 0.0 0.0 NC_045512.2:3010-3048 + 3010 3048 13 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3009;39;0&p=30&e=30&w=0&f=3010-3048", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3010-3048&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.0144615385 0.9981 2.10921800272 -7.11849676949 -14.7833538462 -0.231107692346 NA 0.667976558685 0.627885398014 NA 0.094488035162 0.094488035162 0.384615384615 0.0 0.0 NC_045512.2:5337-5408 + 5337 5408 24 Maximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5336;72;0&p=30&e=30&w=0&f=5337-5408", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5337-5408&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.0158041667 1.0 1.33333333333 -11.261853125 -11.6842291667 -3.33157500003 NA 0.0894774540127 1.0 NA 0.990900211623 0.0803776656357 0.444444444444 0.0 0.0 NC_045512.2:23864-23965 - 23864 23965 34 Maximal AUU NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23863;102;0&s=-&p=30&e=30&w=0&f=23864-23965-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23864-23965&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -15.0176088235 1.0 2.13725490196 -7.02658761467 -23.5617235294 8.54411470591 NA 0.094488035162 0.820143252483 NA 0.972840631613 0.094488035162 0.323529411765 0.0 0.0 NC_045512.2:8675-8704 - 8675 8704 10 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8674;30;0&s=-&p=30&e=30&w=0&f=8675-8704-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8675-8704&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -15.01765 1.0 1.6 -9.38603125 -26.12606 11.10841 NA 0.094488035162 1.0 NA 1.0 0.094488035162 0.333333333333 0.0 0.0 NC_045512.2:10338-10397 + 10338 10397 20 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10337;60;0&p=30&e=30&w=0&f=10338-10397", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10338-10397&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.021245 1.0 1.05 -14.305947619 -11.97666 -3.044585 NA 0.921299039557 1.0 NA 0.671684844538 0.623952466222 0.383333333333 0.461538461538 0.0 NC_045512.2:15008-15055 + 15008 15055 16 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15007;48;0&p=30&e=30&w=0&f=15008-15055", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15008-15055&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.022275 1.0 0.979166666667 -15.3418978723 -8.9757875 -6.0464875 NA 0.912111346248 0.706439850236 NA 0.950867654241 0.657307504477 0.354166666667 1.6 0.0 NC_045512.2:16526-16600 + 16526 16600 25 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16525;75;0&p=30&e=30&w=0&f=16526-16600", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16526-16600&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.024816 1.0 0.96 -15.65085 -10.485996 -4.53882 NA 0.0174377340062 0.0174377340062 NA 1.0 0.0174377340062 0.373333333333 0.416666666667 0.0 NC_045512.2:14312-14425 + 14312 14425 38 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14311;114;0&p=30&e=30&w=0&f=14312-14425", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14312-14425&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.0287026316 1.0 0.921052631579 -16.3168771429 -11.1140421053 -3.91466052634 NA 0.706439850236 0.874751749959 NA 0.673706657985 0.380146508221 0.385964912281 0.0 0.0 NC_045512.2:23864-23950 - 23864 23950 29 NotMaximal AUC NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23863;87;0&s=-&p=30&e=30&w=0&f=23864-23950-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23864-23950&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -15.0345655172 1.0 2.31034482759 -6.50749850744 -23.5852827586 8.55071724142 NA 0.094488035162 0.820143252483 NA 0.882659938141 0.094488035162 0.333333333333 0.0 0.0 NC_045512.2:17641-17682 - 17641 17682 14 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17640;42;0&s=-&p=30&e=30&w=0&f=17641-17682-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17641-17682&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -15.0354571429 1.0 1.11904761905 -13.4359404256 -19.0246 3.9891428571 1.0 0.873410385805 0.706439850236 0.68944489663 1.0 0.68944489663 0.333333333333 0.875 0.0 NC_045512.2:6261-6314 - 6261 6314 18 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6260;54;0&s=-&p=30&e=30&w=0&f=6261-6314-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6261-6314&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -15.0365777778 0.9813 1.17002881065 -12.8514594178 -11.7081111111 -3.32846666669 NA 0.544844538499 0.444590590916 NA 0.871704378968 0.242184600358 0.388888888889 0.981818181818 0.0 NC_045512.2:17114-17200 - 17114 17200 29 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17113;87;0&s=-&p=30&e=30&w=0&f=17114-17200-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17114-17200&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -15.0367137931 1.0 1.10344827586 -13.627021875 -12.5337724138 -2.50294137931 0.706439850236 0.479749308156 1.0 0.479749308156 0.706439850236 0.479749308156 0.494252873563 0.381578947368 0.0 NC_045512.2:17669-17713 + 17669 17713 15 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17668;45;0&p=30&e=30&w=0&f=17669-17713", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17669-17713&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.041 1.0 0.866666666667 -17.355 -8.9154 -6.1256 NA 0.706439850236 0.463805958001 NA 0.706439850236 0.463805958001 0.4 0.5625 0.0 NC_045512.2:8745-8822 + 8745 8822 26 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8744;78;0&p=30&e=30&w=0&f=8745-8822", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8745-8822&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.0530230769 1.0 1.48717948718 -10.1218603448 -12.4242884615 -2.62873461536 NA 0.548302132509 0.996933094579 NA 1.0 0.545235227088 0.410256410256 0.305882352941 0.0 NC_045512.2:15014-15055 + 15014 15055 14 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15013;42;0&p=30&e=30&w=0&f=15014-15055", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15014-15055&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.0532785714 1.0 0.97619047619 -15.4204317073 -10.4934714286 -4.55980714283 1.0 0.912111346248 0.706439850236 0.706439850236 1.0 0.706439850236 0.357142857143 1.90909090909 0.0 NC_045512.2:15728-15763 + 15728 15763 12 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15727;36;0&p=30&e=30&w=0&f=15728-15763", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15728-15763&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.0541416667 1.0 1.22222222222 -12.317025 -5.755775 -9.2983666667 NA 1.0 1.0 NA 0.955096858213 0.955096858213 0.388888888889 0.0 0.194444444444 NC_045512.2:10065-10118 - 10065 10118 18 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10064;54;0&s=-&p=30&e=30&w=0&f=10065-10118-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10065-10118&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -15.0662611111 1.0 0.962962962963 -15.6457326923 -13.7541444444 -1.31211666666 NA 1.0 0.539195832655 NA 1.0 0.539195832655 0.388888888889 0.0 0.259259259259 NC_045512.2:24026-24121 - 24026 24121 32 NotMaximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24025;96;0&s=-&p=30&e=30&w=0&f=24026-24121-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24026-24121&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -15.0685375 1.0 1.90625 -7.90480655738 -25.360815625 10.292278125 NA 0.454432687612 0.341842747843 NA 1.0 0.094488035162 0.416666666667 0.0 0.4375 NC_045512.2:315-386 - 315 386 24 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;314;72;0&s=-&p=30&e=30&w=0&f=315-386-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:315-386&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -15.068625 1.0 1.19444444444 -12.6155930233 -14.8653541667 -0.203270833333 NA 1.0 0.458622822725 NA 0.094488035162 0.094488035162 0.541666666667 1.2 0.277777777778 NC_045512.2:17759-17797 + 17759 17797 13 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17758;39;0&p=30&e=30&w=0&f=17759-17797", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17759-17797&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.0759692308 1.0 1.02564102564 -14.69907 -11.1175230769 -3.95844615388 NA 0.565577079603 1.0 NA 0.987712843887 0.55328992349 0.333333333333 0.0 0.0 NC_045512.2:3581-3610 - 3581 3610 10 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3580;30;0&s=-&p=30&e=30&w=0&f=3581-3610-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3581-3610&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -15.07797 1.0 1.93333333333 -7.79895 -26.1388 11.06083 NA 0.0 0.694152694123 NA 0.094488035162 0.0 0.433333333333 0.75 0.0 NC_045512.2:25928-25969 - 25928 25969 14 NotMaximal AUU NearCognate ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25927;42;0&s=-&p=30&e=30&w=0&f=25928-25969-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25928-25969&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -15.0783142857 1.0 1.52380952381 -9.89514374999 -18.4919785714 3.41366428573 NA 0.364759889305 0.712124369201 NA 0.452648543057 0.364759889305 0.333333333333 0.0 0.0 NC_045512.2:28771-28839 + 28771 28839 23 NotMaximal AUU NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28770;69;0&p=30&e=30&w=0&f=28771-28839", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28771-28839&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.0794 1.0 1.01449275362 -14.86398 -11.0543652174 -4.02503478261 NA 1.0 0.855441966466 NA 0.706439850236 0.649770470454 0.550724637681 0.766666666667 0.0 NC_045512.2:10378-10461 + 10378 10461 28 Maximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10377;84;0&p=30&e=30&w=0&f=10378-10461", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10378-10461&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.0864142857 1.0 1.34523809524 -11.214679646 -18.7782035714 3.69178928573 NA 0.905577079603 0.421305551034 NA 0.47467686798 0.216890769982 0.404761904762 0.0 0.0 NC_045512.2:20986-21024 - 20986 21024 13 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20985;39;0&s=-&p=30&e=30&w=0&f=20986-21024-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20986-21024&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -15.0874769231 1.0 1.28205128205 -11.768232 -18.1055769231 3.01809999998 NA 0.390053719681 0.226869607684 NA 0.918293993163 0.0174377340062 0.358974358974 0.0 0.0 NC_045512.2:15725-15763 + 15725 15763 13 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15724;39;0&p=30&e=30&w=0&f=15725-15763", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15725-15763&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.0918384615 1.0 1.20512820513 -12.5230148936 -5.70208461538 -9.38975384612 NA 1.0 1.0 NA 0.452648543057 0.452648543057 0.410256410256 0.0 0.179487179487 NC_045512.2:26612-26650 + 26612 26650 13 NotMaximal AUG Canonical M =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26611;39;0&p=30&e=30&w=0&f=26612-26650", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26612-26650&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.0952153846 1.0 1.30769230769 -11.5434 -20.1532076923 5.05799230771 0.094488035162 0.301699495361 0.637405176624 0.094488035162 1.0 0.094488035162 0.384615384615 0.0 0.0 NC_045512.2:14090-14140 + 14090 14140 17 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14089;51;0&p=30&e=30&w=0&f=14090-14140", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14090-14140&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.0975176471 1.0 1.29411764706 -11.6662636364 -4.09735882353 -11.0001588236 0.617844701286 0.546736122416 0.452648543057 0.364759889305 1.0 0.452648543057 0.450980392157 0.784615384615 0.0 NC_045512.2:17357-17386 + 17357 17386 10 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17356;30;0&p=30&e=30&w=0&f=17357-17386", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17357-17386&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.10475 1.0 0.966666666667 -15.6256034483 -9.0832 -6.02155 0.912111346248 1.0 1.0 0.912111346248 1.0 1.0 0.266666666667 0.0 0.0 NC_045512.2:16073-16102 + 16073 16102 10 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16072;30;0&p=30&e=30&w=0&f=16073-16102", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16073-16102&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.11466 1.0 0.8 -18.893325 -11.69537 -3.41929 NA 0.0174377340062 1.0 NA 1.0 0.0174377340062 0.3 0.0 0.0 NC_045512.2:24374-24409 - 24374 24409 12 NotMaximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24373;36;0&s=-&p=30&e=30&w=0&f=24374-24409-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24374-24409&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -15.119925 1.0 2.05555555556 -7.35563918919 -19.023025 3.9031 NA 0.653986651473 0.415520104184 NA 1.0 0.390226273808 0.416666666667 0.0 0.833333333333 NC_045512.2:960-1094 + 960 1094 45 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;959;135;0&p=30&e=30&w=0&f=960-1094", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:960-1094&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.1297755556 1.0 1.33333333333 -11.3473316667 -15.8143822222 0.684606666622 NA 0.390053719681 0.88767051929 NA 0.994569428618 0.094488035162 0.37037037037 0.438311688312 0.0 NC_045512.2:16409-16459 - 16409 16459 17 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16408;51;0&s=-&p=30&e=30&w=0&f=16409-16459-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16409-16459&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -15.1412117647 1.0 1.27450980392 -11.8800276923 -17.6173058824 2.47609411765 NA 1.0 0.987712843887 NA 0.677756796354 0.665469640241 0.352941176471 0.0 0.0 NC_045512.2:13904-13936 + 13904 13936 11 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13903;33;0&p=30&e=30&w=0&f=13904-13936", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13904-13936&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.1527363636 1.0 0.878787878788 -17.2427689655 -8.6749 -6.4778363636 NA 0.912111346248 1.0 NA 0.873983395735 0.873983395735 0.242424242424 0.0 0.0 NC_045512.2:9918-10112 + 9918 10112 65 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9917;195;0&p=30&e=30&w=0&f=9918-10112", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9918-10112&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.15806 1.0 1.15384615385 -13.1369853333 -13.1461923077 -2.01186769231 NA 0.539195832655 0.0174377340062 NA 0.840293016441 0.0 0.435897435897 0.107973421927 0.138461538462 NC_045512.2:21348-21392 + 21348 21392 15 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21347;45;0&p=30&e=30&w=0&f=21348-21392", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21348-21392&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.1654333333 1.0 1.55555555556 -9.74920714284 -23.1940133333 8.02858000003 NA 0.847657496337 1.0 NA 1.0 0.847657496337 0.311111111111 0.0 0.0 NC_045512.2:10260-10397 + 10260 10397 46 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10259;138;0&p=30&e=30&w=0&f=10260-10397", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10260-10397&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.1759043478 1.0 1.07971014493 -14.0555355704 -10.4329282609 -4.74297608693 NA 0.921299039557 0.877717727495 NA 0.987637961908 0.78665472896 0.384057971014 0.197142857143 0.0 NC_045512.2:10353-10436 - 10353 10436 28 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10352;84;0&s=-&p=30&e=30&w=0&f=10353-10436-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10353-10436&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -15.1807535714 1.0 1.03571428571 -14.6572793103 -12.5022678571 -2.67848571426 NA 0.568217483314 1.0 NA 0.085388246785 0.085388246785 0.380952380952 0.328125 0.0 NC_045512.2:5489-5617 - 5489 5617 43 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5488;129;0&s=-&p=30&e=30&w=0&f=5489-5617-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5489-5617&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -15.1819860465 1.0 1.70542635659 -8.90216454545 -21.3939395349 6.21195348838 NA 0.724479895816 0.368347712844 NA 0.094488035162 0.094488035162 0.403100775194 0.2015625 0.0 NC_045512.2:7236-7364 + 7236 7364 43 Maximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7235;129;0&p=30&e=30&w=0&f=7236-7364", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7236-7364&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.1880511628 1.0 1.20930232558 -12.55935 -14.1142651163 -1.07378604652 NA 0.390053719681 0.094488035162 NA 0.506309620706 0.094488035162 0.333333333333 0.0 0.209302325581 NC_045512.2:23547-23621 + 23547 23621 25 NotMaximal GUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23546;75;0&p=30&e=30&w=0&f=23547-23621", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23547-23621&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.188108 0.8566 1.94052267089 -7.82681296529 -14.224856 -0.963252 NA 0.322445059417 0.912111346248 NA 0.944642682728 0.322445059417 0.506666666667 0.833333333333 0.626666666667 NC_045512.2:28578-28610 + 28578 28610 11 Maximal AAG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28577;33;0&p=30&e=30&w=0&f=28578-28610", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28578-28610&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.1881090909 1.0 0.909090909091 -16.70692 -10.3705 -4.8176090909 NA 0.993911769494 0.890405339411 NA 1.0 0.884317108904 0.393939393939 0.0 0.0 NC_045512.2:27849-27881 - 27849 27881 11 NotMaximal GUG NearCognate ORF7b =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27848;33;0&s=-&p=30&e=30&w=0&f=27849-27881-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27849-27881&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -15.1925818182 0.911 1.91615849252 -7.92866658866 -16.2017 1.0091181818 NA 0.617720983233 0.635617776331 NA 0.094488035162 0.0174377340062 0.363636363636 0.0 0.0 NC_045512.2:7296-7364 + 7296 7364 23 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7295;69;0&p=30&e=30&w=0&f=7296-7364", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7296-7364&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.1972826087 1.0 1.01449275362 -14.9801785714 -11.373973913 -3.82330869566 NA 0.390053719681 0.094488035162 NA 0.649754191763 0.094488035162 0.31884057971 0.0 0.391304347826 NC_045512.2:16694-16735 - 16694 16735 14 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16693;42;0&s=-&p=30&e=30&w=0&f=16694-16735-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16694-16735&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -15.2180857143 1.0 1.09523809524 -13.8947739131 -11.1637857143 -4.05430000001 0.842891095556 0.240338596777 1.0 0.240338596777 1.0 0.240338596777 0.404761904762 0.583333333333 0.404761904762 NC_045512.2:14546-14605 + 14546 14605 20 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14545;60;0&p=30&e=30&w=0&f=14546-14605", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14546-14605&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.21956 1.0 1.18333333333 -12.8616 -11.98598 -3.23358 NA 0.912111346248 0.0174377340062 NA 1.0 0.0174377340062 0.45 0.32967032967 0.0 NC_045512.2:17114-17206 - 17114 17206 31 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17113;93;0&s=-&p=30&e=30&w=0&f=17114-17206-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17114-17206&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -15.2233387097 1.0 1.06451612903 -14.3007121212 -12.6563387097 -2.56700000002 NA 0.479749308156 0.890405339411 NA 0.890405339411 0.479749308156 0.462365591398 0.407894736842 0.0 NC_045512.2:10226-10276 - 10226 10276 17 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10225;51;0&s=-&p=30&e=30&w=0&f=10226-10276-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10226-10276&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -15.2237058824 1.0 1.41176470588 -10.7834583334 -24.2759470588 9.05224117642 NA 0.368347712844 0.974706169624 NA 1.0 0.343053882468 0.352941176471 0.62962962963 0.0 NC_045512.2:17114-17185 - 17114 17185 24 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17113;72;0&s=-&p=30&e=30&w=0&f=17114-17185-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17114-17185&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -15.2254666667 1.0 1.11111111111 -13.70292 -10.5260791667 -4.69938750003 NA 0.479749308156 1.0 NA 0.517567963536 0.311896467524 0.513888888889 0.447204968944 0.0 NC_045512.2:9930-10112 + 9930 10112 61 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9929;183;0&p=30&e=30&w=0&f=9930-10112", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9930-10112&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.2278885246 1.0 1.14207650273 -13.3335100479 -13.291557377 -1.93633114755 NA 0.539195832655 0.0174377340062 NA 0.507921211135 0.0 0.426229508197 0.12063282795 0.147540983607 NC_045512.2:8694-8723 + 8694 8723 10 Maximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8693;30;0&p=30&e=30&w=0&f=8694-8723", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8694-8723&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.22893 1.0 1.23333333333 -12.3477810811 -6.93046 -8.29847 NA 0.348497476803 1.0 NA 1.0 0.348497476803 0.5 0.6 0.0 NC_045512.2:15467-15505 - 15467 15505 13 Maximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15466;39;0&s=-&p=30&e=30&w=0&f=15467-15505-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15467-15505&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -15.2321076923 1.0 1.0 -15.2321076923 -6.58020769231 -8.65189999999 NA 0.71279179554 0.599794888491 NA 1.0 0.0174377340062 0.512820512821 0.0 0.0 NC_045512.2:5845-5910 + 5845 5910 22 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5844;66;0&p=30&e=30&w=0&f=5845-5910", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5845-5910&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.2367045455 1.0 1.31818181818 -11.5588793104 -20.9990818182 5.76237727268 NA 0.77236529383 0.0 NA 0.683340387433 0.0 0.333333333333 0.589285714286 0.0 NC_045512.2:7611-7706 + 7611 7706 32 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7610;96;0&p=30&e=30&w=0&f=7611-7706", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7611-7706&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.23863125 1.0 1.16666666667 -13.0616839286 -11.538015625 -3.700615625 NA 0.390053719681 0.599511639264 NA 0.886817515872 0.0174377340062 0.34375 0.396694214876 0.0 NC_045512.2:4205-4261 - 4205 4261 19 Maximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4204;57;0&s=-&p=30&e=30&w=0&f=4205-4261-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4205-4261&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -15.2481052632 1.0 1.85964912281 -8.19945283021 -19.5551684211 4.30706315785 NA 0.226869607684 0.315077323783 NA 1.0 0.0174377340062 0.438596491228 0.730769230769 0.0 NC_045512.2:3362-3451 - 3362 3451 30 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3361;90;0&s=-&p=30&e=30&w=0&f=3362-3451-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3362-3451&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -15.2577433333 1.0 1.78888888889 -8.52917329191 -24.9555766667 9.69783333337 NA 0.649770470454 0.974706169624 NA 0.390053719681 0.0174377340062 0.333333333333 0.0 0.0 NC_045512.2:20882-20911 + 20882 20911 10 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20881;30;0&p=30&e=30&w=0&f=20882-20911", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20882-20911&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.26083 1.0 1.53333333333 -9.95271521739 -19.61557 4.35474 NA 0.364759889305 0.772121113462 NA 0.879970698356 0.0174377340062 0.433333333333 0.0 0.0 NC_045512.2:28366-28413 + 28366 28413 16 Maximal ACG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28365;48;0&p=30&e=30&w=0&f=28366-28413", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28366-28413&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.26266875 1.0 1.75 -8.721525 -18.8833375 3.62066875 NA 0.706439850236 0.659514895002 NA 0.865111509035 0.659514895002 0.583333333333 1.23076923077 0.0 NC_045512.2:16445-16600 + 16445 16600 52 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16444;156;0&p=30&e=30&w=0&f=16445-16600", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16445-16600&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.2639788462 1.0 0.980769230769 -15.5632725491 -10.9810673077 -4.28291153851 NA 0.0174377340062 0.0174377340062 NA 0.829659775354 0.0174377340062 0.320512820513 0.253246753247 0.173076923077 NC_045512.2:8480-8512 - 8480 8512 11 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8479;33;0&s=-&p=30&e=30&w=0&f=8480-8512-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8480-8512&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -15.2658909091 1.0 1.30303030303 -11.7156837209 -22.4754818182 7.20959090908 NA 0.0 0.697789353736 NA 1.0 0.0 0.363636363636 0.0 0.0 NC_045512.2:22394-22447 - 22394 22447 18 Maximal AGG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22393;54;0&s=-&p=30&e=30&w=0&f=22394-22447-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22394-22447&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -15.2674277778 1.0 3.37037037037 -4.52989615385 -27.2803444444 12.0129166666 NA 0.289148624451 0.947478430734 NA 0.583805958001 0.225990558359 0.37037037037 0.0 0.0 NC_045512.2:24674-24706 - 24674 24706 11 Maximal AUG Canonical S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24673;33;0&s=-&p=30&e=30&w=0&f=24674-24706-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24674-24706&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -15.2694727273 1.0 1.51515151515 -10.077852 -21.2305636364 5.96109090906 0.716897281459 0.619283737587 1.0 0.50755982419 1.0 0.619283737587 0.333333333333 0.0 0.636363636364 NC_045512.2:27103-27138 + 27103 27138 12 NotMaximal CUG NearCognate M =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27102;36;0&p=30&e=30&w=0&f=27103-27138", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27103-27138&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.2710083333 1.0 1.16666666667 -13.0894357143 -6.38436666667 -8.88664166663 NA 1.0 1.0 NA 1.0 1.0 0.416666666667 0.642857142857 0.472222222222 NC_045512.2:16448-16600 + 16448 16600 51 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16447;153;0&p=30&e=30&w=0&f=16448-16600", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16448-16600&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.272154902 1.0 0.986928104575 -15.4744350994 -10.7207882353 -4.55136666671 NA 0.0174377340062 0.0174377340062 NA 0.630574637799 0.0174377340062 0.326797385621 0.248376623377 0.176470588235 NC_045512.2:13595-13645 - 13595 13645 17 Maximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13594;51;0&s=-&p=30&e=30&w=0&f=13595-13645-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13595-13645&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -15.2739352941 1.0 1.01960784314 -14.9802057692 -17.9091529412 2.63521764708 NA 0.884951977861 1.0 NA 1.0 0.884951977861 0.333333333333 1.45714285714 0.0980392156863 NC_045512.2:16257-16298 + 16257 16298 14 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16256;42;0&p=30&e=30&w=0&f=16257-16298", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16257-16298&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.2766285714 1.0 1.35714285714 -11.2564631579 -10.1148428571 -5.16178571426 NA 0.0174377340062 0.409956047534 NA 1.0 0.0174377340062 0.404761904762 0.583333333333 0.0 NC_045512.2:16538-16600 + 16538 16600 21 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16537;63;0&p=30&e=30&w=0&f=16538-16600", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16538-16600&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.2805666667 1.0 0.920634920635 -16.5978568966 -10.1558571429 -5.12470952384 NA 0.0174377340062 0.0174377340062 NA 0.474243854794 0.0174377340062 0.333333333333 0.0 0.0 NC_045512.2:10758-10865 - 10758 10865 36 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10757;108;0&s=-&p=30&e=30&w=0&f=10758-10865-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10758-10865&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -15.2869555556 1.0 1.10185185185 -13.8738756303 -14.6916 -0.5953555556 NA 0.548012371805 0.912111346248 NA 0.368347712844 0.094488035162 0.361111111111 0.285714285714 0.0 NC_045512.2:8480-8581 - 8480 8581 34 Maximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8479;102;0&s=-&p=30&e=30&w=0&f=8480-8581-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8480-8581&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -15.2901735294 1.0 1.37254901961 -11.1399835714 -19.5158058824 4.22563235295 NA 0.0 0.094488035162 NA 0.483470616962 0.0 0.333333333333 0.0 0.0 NC_045512.2:10984-11085 + 10984 11085 34 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10983;102;0&p=30&e=30&w=0&f=10984-11085", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10984-11085&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.3001058824 1.0 1.30392156863 -11.7339157895 -16.9453617647 1.64525588231 NA 0.73288295621 0.368347712844 NA 0.094488035162 0.094488035162 0.343137254902 0.0 0.0 NC_045512.2:19258-19353 - 19258 19353 32 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19257;96;0&s=-&p=30&e=30&w=0&f=19258-19353-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19258-19353&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -15.316909375 1.0 1.61458333333 -9.48660193548 -19.20655 3.889640625 NA 0.499531173694 0.343053882468 NA 0.912111346248 0.0174377340062 0.364583333333 0.0 0.0 NC_045512.2:9569-9613 - 9569 9613 15 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9568;45;0&s=-&p=30&e=30&w=0&f=9569-9613-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9569-9613&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -15.31896 1.0 1.2 -12.7658 -14.72694 -0.59202 NA 0.477942373433 0.592974116881 NA 0.094488035162 0.094488035162 0.288888888889 0.0 0.866666666667 NC_045512.2:25906-25938 - 25906 25938 11 Maximal AUG Canonical ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25905;33;0&s=-&p=30&e=30&w=0&f=25906-25938-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25906-25938&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -15.3224545455 1.0 2.93939393939 -5.21279381445 -22.8504181818 7.52796363632 0.0174377340062 0.407996093114 0.613075044766 0.0174377340062 0.472931792284 0.0174377340062 0.424242424242 0.0 0.0 NC_045512.2:26671-26712 - 26671 26712 14 Maximal AAG NearCognate M =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26670;42;0&s=-&p=30&e=30&w=0&f=26671-26712-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26671-26712&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -15.3259714286 1.0 1.09523809524 -13.9932782609 -13.8098214286 -1.51615000003 NA 0.27465733355 0.706439850236 NA 1.0 0.27465733355 0.380952380952 0.0 0.0238095238095 NC_045512.2:9900-10112 + 9900 10112 71 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9899;213;0&p=30&e=30&w=0&f=9900-10112", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9900-10112&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.3317619718 1.0 1.11267605634 -13.779178481 -13.1964056338 -2.135356338 NA 0.539195832655 0.0174377340062 NA 0.533101090672 0.0 0.413145539906 0.11007751938 0.12676056338 NC_045512.2:9033-9080 + 9033 9080 16 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9032;48;0&p=30&e=30&w=0&f=9033-9080", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9033-9080&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.33179375 1.0 1.10416666667 -13.8853981132 -10.93865625 -4.3931375 NA 0.529425362201 1.0 NA 0.890405339411 0.529425362201 0.375 0.0 0.0 NC_045512.2:1476-1529 - 1476 1529 18 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1475;54;0&s=-&p=30&e=30&w=0&f=1476-1529-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1476-1529&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -15.3354777778 1.0 1.48148148148 -10.3514475 -23.8841277778 8.54864999998 NA 0.865111509035 1.0 NA 1.0 0.865111509035 0.462962962963 0.0 0.148148148148 NC_045512.2:20808-20846 + 20808 20846 13 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20807;39;0&p=30&e=30&w=0&f=20808-20846", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20808-20846&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.3392461538 1.0 1.15384615385 -13.2940133333 -20.1868846154 4.84763846158 NA 0.655930327202 1.0 NA 1.0 0.655930327202 0.307692307692 0.0 0.102564102564 NC_045512.2:15569-15664 + 15569 15664 32 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15568;96;0&p=30&e=30&w=0&f=15569-15664", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15569-15664&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.33935 1.0 1.10416666667 -13.8922415094 -8.605734375 -6.733615625 NA 0.434351294156 0.674426176135 NA 1.0 0.343053882468 0.364583333333 0.631578947368 0.0 NC_045512.2:7235-7309 - 7235 7309 25 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7234;75;0&s=-&p=30&e=30&w=0&f=7235-7309-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7235-7309&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -15.343172 1.0 1.37333333333 -11.1722126214 -16.350028 1.006856 NA 0.421523685496 0.094488035162 NA 1.0 0.094488035162 0.373333333333 0.0 0.0 NC_045512.2:17114-17188 - 17114 17188 25 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17113;75;0&s=-&p=30&e=30&w=0&f=17114-17188-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17114-17188&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -15.343284 1.0 1.10666666667 -13.864413253 -10.984156 -4.359128 NA 0.479749308156 1.0 NA 0.817808888165 0.40715285691 0.493333333333 0.465838509317 0.0 NC_045512.2:5489-5623 - 5489 5623 45 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5488;135;0&s=-&p=30&e=30&w=0&f=5489-5623-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5489-5623&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -15.3450577778 1.0 1.71851851852 -8.92923620691 -20.39332 5.0482622222 NA 0.724479895816 0.368347712844 NA 0.571320201856 0.368347712844 0.4 0.191761363636 0.0 NC_045512.2:8999-9037 - 8999 9037 13 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8998;39;0&s=-&p=30&e=30&w=0&f=8999-9037-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8999-9037&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -15.3475615385 1.0 1.4358974359 -10.6884803572 -22.9471615385 7.59959999996 NA 0.554810353248 0.764278040046 NA 0.940247436106 0.445215692658 0.333333333333 0.0 0.0 NC_045512.2:20222-20260 + 20222 20260 13 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20221;39;0&p=30&e=30&w=0&f=20222-20260", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20222-20260&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.3523153846 1.0 1.41025641026 -10.8861872727 -20.1743846154 4.82206923078 NA 0.364759889305 1.0 NA 0.88406641706 0.0174377340062 0.307692307692 0.0 0.0 NC_045512.2:5147-5182 - 5147 5182 12 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5146;36;0&s=-&p=30&e=30&w=0&f=5147-5182-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5147-5182&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -15.3552916667 1.0 1.41666666667 -10.8390294118 -17.9375333333 2.58224166663 NA 0.813755494058 0.890405339411 NA 0.84935373596 0.514107113788 0.444444444444 0.5625 0.0 NC_045512.2:9897-10112 + 9897 10112 72 Maximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9896;216;0&p=30&e=30&w=0&f=9897-10112", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9897-10112&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.3687763889 1.0 1.11111111111 -13.83189875 -13.1396777778 -2.22909861112 NA 0.539195832655 0.0174377340062 NA 0.93151554615 0.0 0.407407407407 0.111627906977 0.125 NC_045512.2:8973-9020 - 8973 9020 16 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8972;48;0&s=-&p=30&e=30&w=0&f=8973-9020-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8973-9020&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -15.3691 1.0 1.35416666667 -11.3494892308 -22.6255 7.2564 NA 0.70207064952 0.657362852027 NA 0.660136741006 0.094488035162 0.416666666667 0.0 0.0 NC_045512.2:9110-9172 - 9110 9172 21 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9109;63;0&s=-&p=30&e=30&w=0&f=9110-9172-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9110-9172&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -15.3693666667 1.0 1.31746031746 -11.6659048193 -16.5481047619 1.1787380952 NA 0.452648543057 0.5910174182 NA 0.494149438385 0.0174377340062 0.444444444444 0.736842105263 0.0 NC_045512.2:7938-7979 + 7938 7979 14 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7937;42;0&p=30&e=30&w=0&f=7938-7979", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7938-7979&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.3728142857 1.0 1.30952380952 -11.73924 -13.9610857143 -1.41172857141 NA 0.608637473547 0.526615660101 NA 1.0 0.315077323783 0.380952380952 0.0 0.0 NC_045512.2:438-530 + 438 530 31 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;437;93;0&p=30&e=30&w=0&f=438-530", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:438-530&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.373883871 1.0 2.05376344086 -7.48571308902 -10.7427580645 -4.63112580648 NA 0.27465733355 0.612954582452 NA 1.0 0.0174377340062 0.483870967742 0.735177865613 0.354838709677 NC_045512.2:15590-15664 + 15590 15664 25 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15589;75;0&p=30&e=30&w=0&f=15590-15664", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15590-15664&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.380128 1.0 1.14666666667 -13.4129023256 -9.008444 -6.371684 NA 0.434351294156 0.944587335178 NA 0.311587172391 0.0174377340062 0.346666666667 0.446428571429 0.0 NC_045512.2:10287-10397 + 10287 10397 37 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10286;111;0&p=30&e=30&w=0&f=10287-10397", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10287-10397&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.3806027027 1.0 1.03603603604 -14.8456252174 -10.4861810811 -4.89442162162 NA 0.921299039557 0.877717727495 NA 0.816640078138 0.602480872538 0.369369369369 0.264285714286 0.0 NC_045512.2:315-383 - 315 383 23 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;314;69;0&s=-&p=30&e=30&w=0&f=315-383-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:315-383&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -15.3864173913 1.0 1.21739130435 -12.6388428571 -14.1020043478 -1.28441304347 NA 1.0 0.458622822725 NA 0.541214390363 0.094488035162 0.536231884058 1.28571428571 0.289855072464 NC_045512.2:19006-19101 - 19006 19101 32 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19005;96;0&s=-&p=30&e=30&w=0&f=19006-19101-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19006-19101&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -15.3877875 1.0 1.52083333333 -10.1179972603 -24.449446875 9.061659375 NA 0.225990558359 0.950157903305 NA 1.0 0.225990558359 0.416666666667 0.24 0.0 NC_045512.2:13802-13864 - 13802 13864 21 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13801;63;0&s=-&p=30&e=30&w=0&f=13802-13864-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13802-13864&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -15.390247619 1.0 1.0 -15.390247619 -15.9544857143 0.564238095286 0.636216832167 0.878118183298 1.0 0.607774702914 0.890405339411 0.878118183298 0.380952380952 0.440559440559 0.0 NC_045512.2:17834-17908 + 17834 17908 25 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17833;75;0&p=30&e=30&w=0&f=17834-17908", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17834-17908&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.397964 1.0 1.13333333333 -13.5864388235 -17.212996 1.815032 NA 0.309809539313 0.813446198926 NA 0.811443919909 0.309809539313 0.386666666667 0.0 0.0 NC_045512.2:17594-17713 + 17594 17713 40 Maximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17593;120;0&p=30&e=30&w=0&f=17594-17713", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17594-17713&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.401775 1.0 1.11666666667 -13.7926343284 -12.8483175 -2.5534575 NA 0.706439850236 0.0 NA 0.890405339411 0.0 0.333333333333 0.300751879699 0.116666666667 NC_045512.2:19768-19992 - 19768 19992 75 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19767;225;0&s=-&p=30&e=30&w=0&f=19768-19992-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19768-19992&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -15.4027093333 1.0 1.52888888889 -10.0744465116 -21.557092 6.1543826667 NA 0.0174377340062 0.0174377340062 NA 0.973377828423 0.0174377340062 0.4 0.22233201581 0.0 NC_045512.2:2382-2462 + 2382 2462 27 Maximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2381;81;0&p=30&e=30&w=0&f=2382-2462", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:2382-2462&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.4042925926 1.0 2.04938271605 -7.51655240964 -16.7225222222 1.31822962962 NA 0.476714960117 0.899749308156 NA 0.881445547778 0.094488035162 0.432098765432 0.264705882353 0.0 NC_045512.2:7291-7341 + 7291 7341 17 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7290;51;0&p=30&e=30&w=0&f=7291-7341", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7291-7341&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.4198823529 1.0 1.09803921569 -14.0431071428 -10.4425882353 -4.97729411761 NA 0.457834934071 0.589617450757 NA 0.094488035162 0.094488035162 0.313725490196 0.0 0.450980392157 NC_045512.2:20298-20339 + 20298 20339 14 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20297;42;0&p=30&e=30&w=0&f=20298-20339", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20298-20339&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.4287 1.0 1.57142857143 -9.81826363636 -15.9171857143 0.488485714286 NA 0.78138694449 0.857164251994 NA 0.220058603288 0.0 0.357142857143 1.55555555556 0.0 NC_045512.2:19664-19738 + 19664 19738 25 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19663;75;0&p=30&e=30&w=0&f=19664-19738", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19664-19738&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.429616 1.0 1.68 -9.1842952381 -11.075592 -4.354024 NA 0.670844864073 0.343053882468 NA 0.901816701937 0.343053882468 0.36 0.0 0.0 NC_045512.2:1269-1310 + 1269 1310 14 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1268;42;0&p=30&e=30&w=0&f=1269-1310", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1269-1310&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.4312857143 1.0 1.57142857143 -9.81990909092 -6.54757142857 -8.88371428573 NA 0.553683867817 0.419843724565 NA 0.685336154973 0.094488035162 0.357142857143 0.777777777778 0.714285714286 NC_045512.2:15722-15763 + 15722 15763 14 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15721;42;0&p=30&e=30&w=0&f=15722-15763", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15722-15763&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.4346214286 1.0 1.2619047619 -12.231209434 -5.87126428571 -9.56335714289 0.959059091649 1.0 1.0 0.959059091649 1.0 1.0 0.404761904762 0.0 0.166666666667 NC_045512.2:19931-19975 - 19931 19975 15 Maximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19930;45;0&s=-&p=30&e=30&w=0&f=19931-19975-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19931-19975&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -15.4356733333 1.0 1.4 -11.0254809524 -14.7201133333 -0.715559999967 NA 0.219560475338 0.0174377340062 NA 0.811010906723 0.0174377340062 0.444444444444 0.46875 0.0 NC_045512.2:16520-16600 + 16520 16600 27 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16519;81;0&p=30&e=30&w=0&f=16520-16600", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16520-16600&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.4400777778 1.0 0.950617283951 -16.2421597403 -10.1028444444 -5.33723333336 NA 0.0174377340062 0.0174377340062 NA 0.464737099137 0.0174377340062 0.358024691358 0.409090909091 0.0 NC_045512.2:7235-7324 - 7235 7324 30 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7234;90;0&s=-&p=30&e=30&w=0&f=7235-7324-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7235-7324&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -15.4466233333 1.0 1.36666666667 -11.302407317 -16.94811 1.5014866667 NA 0.421523685496 0.094488035162 NA 0.884431059743 0.094488035162 0.355555555556 0.0 0.0666666666667 NC_045512.2:12960-13058 - 12960 13058 33 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12959;99;0&s=-&p=30&e=30&w=0&f=12960-13058-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12960-13058&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -15.4489757576 1.0 0.979797979798 -15.7675113402 -16.0087272727 0.559751515127 NA 0.890405339411 0.355660100928 NA 0.912111346248 0.0 0.414141414141 0.236842105263 0.484848484848 NC_045512.2:17271-17327 + 17271 17327 19 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17270;57;0&p=30&e=30&w=0&f=17271-17327", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17271-17327&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.4527736842 1.0 0.912280701754 -16.9386173077 -17.1862526316 1.73347894738 NA 0.546527755168 0.6312388084 NA 0.890405339411 0.305033371317 0.315789473684 0.0 0.0 NC_045512.2:9301-9348 + 9301 9348 16 Maximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9300;48;0&p=30&e=30&w=0&f=9301-9348", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9301-9348&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.4569375 1.0 1.64583333333 -9.39155696203 -17.637425 2.1804875 NA 0.811323457594 0.336832166694 NA 0.368347712844 0.094488035162 0.354166666667 0.0 0.0 NC_045512.2:12504-12569 + 12504 12569 22 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12503;66;0&p=30&e=30&w=0&f=12504-12569", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12504-12569&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.4621454545 1.0 1.09090909091 -14.1736333333 -12.8632272727 -2.59891818177 NA 0.307139833957 1.0 NA 0.364759889305 0.0 0.363636363636 0.471428571429 0.348484848485 NC_045512.2:24509-24565 - 24509 24565 19 NotMaximal AAG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24508;57;0&s=-&p=30&e=30&w=0&f=24509-24565-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24509-24565&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -15.4657526316 1.0 1.82456140351 -8.4764221154 -26.4508210526 10.985068421 NA 0.590024418037 0.457834934071 NA 0.500540452548 0.094488035162 0.438596491228 0.395833333333 0.0 NC_045512.2:13724-13756 + 13724 13756 11 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13723;33;0&p=30&e=30&w=0&f=13724-13756", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13724-13756&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.4698818182 1.0 1.0 -15.4698818182 -6.95685454545 -8.51302727275 NA 0.948510499756 1.0 NA 0.599671170438 0.581299039557 0.30303030303 0.0 0.484848484848 NC_045512.2:3078-3203 + 3078 3203 42 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3077;126;0&p=30&e=30&w=0&f=3078-3203", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3078-3203&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.4710119048 0.9444 2.47397176998 -6.25351190039 -15.8077738095 0.336761904724 NA 0.094488035162 0.854504313853 NA 0.882659938141 0.085388246785 0.404761904762 0.0 0.0 NC_045512.2:16505-16600 + 16505 16600 32 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16504;96;0&p=30&e=30&w=0&f=16505-16600", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16505-16600&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.47995 1.0 0.989583333333 -15.6428968421 -10.62695625 -4.85299375 NA 0.0174377340062 0.0174377340062 NA 1.0 0.0174377340062 0.322916666667 0.436363636364 0.0520833333333 NC_045512.2:19376-19414 + 19376 19414 13 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19375;39;0&p=30&e=30&w=0&f=19376-19414", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19376-19414&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.4811769231 1.0 1.25641025641 -12.3217530612 -11.3090307692 -4.17214615387 NA 0.463805958001 1.0 NA 0.944642682728 0.42682077161 0.410256410256 0.0 0.0 NC_045512.2:6647-6685 - 6647 6685 13 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6646;39;0&s=-&p=30&e=30&w=0&f=6647-6685-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6647-6685&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -15.4830538462 1.0 1.84615384615 -8.38665416669 -18.8919769231 3.40892307688 NA 0.0174377340062 1.0 NA 0.094488035162 0.0174377340062 0.410256410256 0.0 0.0 NC_045512.2:7410-7445 - 7410 7445 12 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7409;36;0&s=-&p=30&e=30&w=0&f=7410-7445-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7410-7445&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -15.483275 1.0 1.61111111111 -9.61030862069 -14.365325 -1.11795 NA 1.0 1.0 NA 0.683128764447 0.683128764447 0.25 0.0 0.0 NC_045512.2:5343-5408 + 5343 5408 22 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5342;66;0&p=30&e=30&w=0&f=5343-5408", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5343-5408&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.4856318182 1.0 1.34848484848 -11.4837269663 -10.8755363636 -4.61009545456 NA 0.0894774540127 1.0 NA 0.266534266645 0.0174377340062 0.439393939394 0.0 0.0 NC_045512.2:12495-12569 + 12495 12569 25 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12494;75;0&p=30&e=30&w=0&f=12495-12569", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12495-12569&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.486624 1.0 1.12 -13.8273428571 -12.409176 -3.077448 NA 0.307139833957 1.0 NA 1.0 0.307139833957 0.346666666667 0.446428571429 0.36 NC_045512.2:5565-5654 + 5565 5654 30 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5564;90;0&p=30&e=30&w=0&f=5565-5654", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5565-5654&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.5010266667 1.0 1.6 -9.68814166669 -9.39891 -6.1021166667 NA 0.990021162299 0.368347712844 NA 0.863405502198 0.363337131695 0.355555555556 0.352941176471 0.0 NC_045512.2:5032-5070 + 5032 5070 13 Maximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5031;39;0&p=30&e=30&w=0&f=5032-5070", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5032-5070&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.5061307692 1.0 1.41025641026 -10.9952563636 -16.1015538462 0.595423076954 NA 1.0 1.0 NA 0.64881653915 0.64881653915 0.410256410256 0.0 0.0 NC_045512.2:3063-3203 + 3063 3203 47 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3062;141;0&p=30&e=30&w=0&f=3063-3203", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3063-3203&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.5123638298 0.9386 2.64090056462 -5.87389167075 -16.2839851064 0.771621276583 NA 0.094488035162 0.832873188996 NA 0.874751749959 0.085388246785 0.404255319149 0.0 0.0 NC_045512.2:6525-6560 - 6525 6560 12 Maximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6524;36;0&s=-&p=30&e=30&w=0&f=6525-6560-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6525-6560&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -15.5215583333 0.9832 1.44049508324 -10.7751553712 -15.94185 0.4202916667 NA 0.545723587824 0.617987953769 NA 0.993661077649 0.457834934071 0.5 0.0 0.0 NC_045512.2:24026-24136 - 24026 24136 37 NotMaximal AAG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24025;111;0&s=-&p=30&e=30&w=0&f=24026-24136-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24026-24136&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -15.5217135135 1.0 1.9009009009 -8.16545118483 -24.8076 9.2858864865 NA 0.454432687612 0.341842747843 NA 0.588617939118 0.0883998046557 0.414414414414 0.209829867675 0.378378378378 NC_045512.2:15902-15991 - 15902 15991 30 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15901;90;0&s=-&p=30&e=30&w=0&f=15902-15991-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15902-15991&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -15.52239 1.0 0.988888888889 -15.6967988764 -14.2094933333 -1.31289666667 NA 1.0 0.249363503174 NA 0.912111346248 0.249363503174 0.433333333333 0.47619047619 0.111111111111 NC_045512.2:6180-6347 + 6180 6347 56 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6179;168;0&p=30&e=30&w=0&f=6180-6347", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6180-6347&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.5226964286 0.9813 1.21316351335 -12.7952219612 -11.7355107143 -3.78718571431 NA 0.363337131695 0.637655868468 NA 0.981299039557 0.363337131695 0.345238095238 0.610909090909 0.303571428571 NC_045512.2:10263-10397 + 10263 10397 45 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10262;135;0&p=30&e=30&w=0&f=10263-10397", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10263-10397&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.5232111111 1.0 1.07407407407 -14.4526448276 -10.7901888889 -4.73302222221 NA 0.921299039557 0.877717727495 NA 0.899749308156 0.78665472896 0.377777777778 0.207692307692 0.0 NC_045512.2:9912-10112 + 9912 10112 67 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9911;201;0&p=30&e=30&w=0&f=9912-10112", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9912-10112&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.5249567164 1.0 1.15422885572 -13.4505012931 -13.5669268657 -1.95802985073 NA 0.539195832655 0.0174377340062 NA 0.890405339411 0.0 0.422885572139 0.111295681063 0.134328358209 NC_045512.2:8973-9002 - 8973 9002 10 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8972;30;0&s=-&p=30&e=30&w=0&f=8973-9002-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8973-9002&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -15.52839 1.0 1.2 -12.940325 -22.81157 7.28318 NA 0.70207064952 0.657362852027 NA 1.0 0.363802702263 0.4 0.0 0.0 NC_045512.2:27665-27712 + 27665 27712 16 NotMaximal AGG NearCognate ORF7a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27664;48;0&p=30&e=30&w=0&f=27665-27712", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27665-27712&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.53195 1.0 2.14583333333 -7.23819029126 -10.49248125 -5.03946875 NA 0.706439850236 0.706439850236 NA 0.649770470454 0.649770470454 0.354166666667 0.666666666667 0.0 NC_045512.2:13901-13936 + 13901 13936 12 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13900;36;0&p=30&e=30&w=0&f=13901-13936", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13901-13936&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.544725 1.0 1.08333333333 -14.3489769231 -8.40048333333 -7.14424166667 0.535757773075 0.912111346248 1.0 0.535757773075 0.852277388898 0.668311899723 0.25 0.0 0.0 NC_045512.2:3362-3460 - 3362 3460 33 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3361;99;0&s=-&p=30&e=30&w=0&f=3362-3460-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3362-3460&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -15.5504818182 1.0 1.86868686869 -8.3216091892 -24.8175818182 9.26709999998 NA 0.649770470454 0.808442129253 NA 0.094488035162 0.0174377340062 0.333333333333 0.0 0.0 NC_045512.2:11750-11842 - 11750 11842 31 Maximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;11749;93;0&s=-&p=30&e=30&w=0&f=11750-11842-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:11750-11842&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -15.5650387097 1.0 1.09677419355 -14.1916529412 -19.2421709677 3.67713225804 NA 0.0 0.857405176624 NA 1.0 0.0 0.430107526882 0.0 0.0 NC_045512.2:7575-7706 + 7575 7706 44 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7574;132;0&p=30&e=30&w=0&f=7575-7706", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7575-7706&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.567475 1.0 1.2196969697 -12.7633956522 -11.4305795455 -4.13689545455 0.963206902165 0.390053719681 0.599511639264 0.094488035162 1.0 0.094488035162 0.356060606061 0.258823529412 0.0 NC_045512.2:18812-18844 + 18812 18844 11 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18811;33;0&p=30&e=30&w=0&f=18812-18844", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18812-18844&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.5809727273 1.0 1.78787878788 -8.71478135595 -1.67176363636 -13.9092090909 NA 0.25216343806 1.0 NA 0.439391176949 0.246075207553 0.393939393939 0.0 0.030303030303 NC_045512.2:28146-28187 - 28146 28187 14 NotMaximal AAG NearCognate ORF8 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28145;42;0&s=-&p=30&e=30&w=0&f=28146-28187-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28146-28187&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -15.5824142857 0.6988 5.33804044432 -2.91912630641 -21.9925642857 6.41015000001 NA 0.0174377340062 0.770294644311 NA 0.409151880189 0.0174377340062 0.357142857143 0.0 0.0 NC_045512.2:27468-27542 + 27468 27542 25 Maximal AGG NearCognate ORF7a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27467;75;0&p=30&e=30&w=0&f=27468-27542", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27468-27542&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.58276 1.0 1.37333333333 -11.3466699029 -18.094152 2.511392 NA 0.980175809865 0.615152205763 NA 0.975259645125 0.578333062022 0.413333333333 0.328947368421 0.0 NC_045512.2:10917-10979 + 10917 10979 21 Maximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10916;63;0&p=30&e=30&w=0&f=10917-10979", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10917-10979&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.5839380952 1.0 1.07936507937 -14.4380602941 -14.3717380952 -1.21219999996 NA 0.094488035162 0.595021976233 NA 1.0 0.094488035162 0.365079365079 0.0 0.0 NC_045512.2:5739-5786 - 5739 5786 16 Maximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5738;48;0&s=-&p=30&e=30&w=0&f=5739-5786-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5739-5786&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -15.59800625 1.0 1.02083333333 -15.2796795918 -13.587125 -2.01088125 NA 0.758980953931 0.895116392642 NA 0.368347712844 0.094488035162 0.354166666667 0.0 0.5625 NC_045512.2:9110-9223 - 9110 9223 38 Maximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9109;114;0&s=-&p=30&e=30&w=0&f=9110-9223-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9110-9223&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -15.6011157895 1.0 1.23684210526 -12.6136680851 -18.1360657895 2.53494999997 NA 0.452648543057 0.565723587824 NA 1.0 0.0174377340062 0.429824561404 0.38127090301 0.0 NC_045512.2:11163-11204 + 11163 11204 14 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;11162;42;0&p=30&e=30&w=0&f=11163-11204", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:11163-11204&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.6021571429 1.0 1.07142857143 -14.5620133334 -16.7476642857 1.14550714281 0.778346084975 0.094488035162 0.685990558359 0.094488035162 1.0 0.094488035162 0.380952380952 0.0 0.0 NC_045512.2:15584-15664 + 15584 15664 27 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15583;81;0&p=30&e=30&w=0&f=15584-15664", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15584-15664&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.6029962963 1.0 1.12345679012 -13.8883813187 -8.35088888889 -7.25210740741 NA 0.434351294156 0.674426176135 NA 0.729838840957 0.343053882468 0.37037037037 0.723214285714 0.0 NC_045512.2:17122-17169 - 17122 17169 16 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17121;48;0&s=-&p=30&e=30&w=0&f=17122-17169-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17122-17169&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -15.605525 1.0 1.16666666667 -13.3761642857 -20.24005625 4.63453125 0.895116392642 0.0174377340062 0.895116392642 0.0174377340062 1.0 0.0174377340062 0.479166666667 0.428571428571 0.0 NC_045512.2:10305-10397 + 10305 10397 31 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10304;93;0&p=30&e=30&w=0&f=10305-10397", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10305-10397&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.6104935484 1.0 1.0752688172 -14.517759 -11.4472903226 -4.16320322582 NA 0.921299039557 0.877717727495 NA 0.891662054371 0.778567475175 0.376344086022 0.303921568627 0.0 NC_045512.2:6174-6347 + 6174 6347 58 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6173;174;0&p=30&e=30&w=0&f=6174-6347", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6174-6347&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.6108965517 0.9813 1.19475689453 -13.0661698821 -11.404512069 -4.20638448273 NA 0.363337131695 0.637655868468 NA 0.981299039557 0.363337131695 0.33908045977 0.608391608392 0.327586206897 NC_045512.2:19006-19104 - 19006 19104 33 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19005;99;0&s=-&p=30&e=30&w=0&f=19006-19104-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19006-19104&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -15.6114090909 1.0 1.52525252525 -10.235294702 -23.7121575758 8.10074848486 NA 0.225990558359 0.950157903305 NA 0.643509685821 0.225990558359 0.424242424242 0.225 0.0 NC_045512.2:4835-4885 - 4835 4885 17 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4834;51;0&s=-&p=30&e=30&w=0&f=4835-4885-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4835-4885&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -15.6303117647 1.0 1.76470588235 -8.85717666666 -19.6010352941 3.97072352942 NA 0.912111346248 0.80092462966 NA 0.468842585056 0.085388246785 0.274509803922 0.0 0.0 NC_045512.2:12480-12569 + 12480 12569 30 Maximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12479;90;0&p=30&e=30&w=0&f=12480-12569", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12480-12569&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.6425833333 1.0 1.07777777778 -14.5137371134 -11.5218566667 -4.12072666663 NA 0.307139833957 0.890405339411 NA 0.869956047534 0.307139833957 0.355555555556 0.3515625 0.3 NC_045512.2:10308-10397 + 10308 10397 30 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10307;90;0&p=30&e=30&w=0&f=10308-10397", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10308-10397&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.64369 1.0 1.08888888889 -14.3666540816 -11.6048333333 -4.03885666667 NA 0.921299039557 0.877717727495 NA 0.094488035162 0.0 0.388888888889 0.294117647059 0.0 NC_045512.2:10356-10397 + 10356 10397 14 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10355;42;0&p=30&e=30&w=0&f=10356-10397", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10356-10397&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.6462357143 1.0 1.19047619048 -13.142838 -11.9223857143 -3.72385000001 NA 0.921299039557 1.0 NA 0.949086765424 0.882672961094 0.380952380952 0.65625 0.0 NC_045512.2:20771-20827 - 20771 20827 19 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20770;57;0&s=-&p=30&e=30&w=0&f=20771-20827-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20771-20827&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -15.6548842105 1.0 0.912280701754 -17.1601615384 -14.4597368421 -1.19514736839 0.0 0.094488035162 0.906918443757 0.0 1.0 0.094488035162 0.298245614035 0.791666666667 0.473684210526 NC_045512.2:9990-10031 - 9990 10031 14 Maximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9989;42;0&s=-&p=30&e=30&w=0&f=9990-10031-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9990-10031&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -15.6591714286 1.0 1.40476190476 -11.1472067797 -19.3452714286 3.68609999997 NA 1.0 1.0 NA 1.0 1.0 0.428571428571 0.0 0.0 NC_045512.2:12741-12791 - 12741 12791 17 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12740;51;0&s=-&p=30&e=30&w=0&f=12741-12791-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12741-12791&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -15.6635294118 1.0 1.27450980392 -12.2898461539 -17.7461529412 2.08262352938 NA 0.832462965978 0.607481686472 NA 0.469786749145 0.389370014651 0.411764705882 0.520408163265 0.0 NC_045512.2:16027-16071 - 16027 16071 15 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16026;45;0&s=-&p=30&e=30&w=0&f=16027-16071-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16027-16071&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -15.6640066667 1.0 1.35555555556 -11.5554147541 -26.8677533333 11.2037466666 NA 0.845205925444 1.0 NA 0.912111346248 0.757317271691 0.377777777778 0.0 0.0 NC_045512.2:6570-6614 + 6570 6614 15 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6569;45;0&p=30&e=30&w=0&f=6570-6614", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6570-6614&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.6655266667 1.0 1.68888888889 -9.27564078949 -15.0141666667 -0.651360000033 NA 0.861852515058 0.642057626567 NA 0.714484779424 0.554168972815 0.244444444444 0.0 0.6 NC_045512.2:3098-3178 - 3098 3178 27 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3097;81;0&s=-&p=30&e=30&w=0&f=3098-3178-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3098-3178&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -15.6734444444 0.9514 2.40063252664 -6.52888114715 -17.8378333333 2.16438888893 NA 0.085388246785 0.343053882468 NA 0.390053719681 0.0 0.407407407407 0.0 0.0 NC_045512.2:16514-16600 + 16514 16600 29 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16513;87;0&p=30&e=30&w=0&f=16514-16600", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16514-16600&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.6744344828 1.0 1.01149425287 -15.4963159091 -11.0076275862 -4.66680689659 NA 0.0174377340062 0.0174377340062 NA 0.65913071789 0.0174377340062 0.333333333333 0.439393939394 0.0 NC_045512.2:23540-23599 - 23540 23599 20 NotMaximal AUU NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23539;60;0&s=-&p=30&e=30&w=0&f=23540-23599-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23540-23599&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -15.68822 1.0 1.66666666667 -9.412932 -21.767075 6.078855 NA 0.326052417386 0.684795702426 NA 0.31643171089 0.240146508221 0.416666666667 0.38961038961 0.9 NC_045512.2:15596-15664 + 15596 15664 23 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15595;69;0&p=30&e=30&w=0&f=15596-15664", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15596-15664&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.6930913043 1.0 1.1884057971 -13.2051621951 -9.4261173913 -6.266973913 0.803978512128 0.434351294156 0.944587335178 0.425251505779 1.0 0.434351294156 0.36231884058 0.442307692308 0.0 NC_045512.2:5856-5903 - 5856 5903 16 Maximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5855;48;0&s=-&p=30&e=30&w=0&f=5856-5903-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5856-5903&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -15.7108875 1.0 1.3125 -11.9702 -17.6370625 1.926175 NA 0.390053719681 0.368347712844 NA 0.094488035162 0.094488035162 0.354166666667 0.727272727273 0.0 NC_045512.2:5949-5981 - 5949 5981 11 Maximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5948;33;0&s=-&p=30&e=30&w=0&f=5949-5981-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5949-5981&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -15.7176909091 0.9979 1.00037929609 -15.7117315108 -17.4746181818 1.75692727272 NA 0.292749470943 0.981299039557 NA 0.981299039557 0.28038743285 0.242424242424 0.0 0.0 NC_045512.2:8406-8489 + 8406 8489 28 Maximal ACG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8405;84;0&p=30&e=30&w=0&f=8406-8489", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8406-8489&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.722675 1.0 1.34523809524 -11.6876522124 -15.336225 -0.38645 NA 0.755041510663 0.424678495849 NA 1.0 0.254738727006 0.309523809524 1.5 0.0 NC_045512.2:9110-9205 - 9110 9205 32 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9109;96;0&s=-&p=30&e=30&w=0&f=9110-9205-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9110-9205&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -15.72895625 1.0 1.22916666667 -12.7964389831 -19.001846875 3.272890625 NA 0.452648543057 0.5910174182 NA 1.0 0.0174377340062 0.416666666667 0.484848484848 0.0 NC_045512.2:15911-15952 + 15911 15952 14 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15910;42;0&p=30&e=30&w=0&f=15911-15952", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15911-15952&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.7307214286 1.0 1.28571428571 -12.2350055556 -10.2688714286 -5.46185000003 0.997066579847 1.0 1.0 0.997066579847 1.0 1.0 0.404761904762 0.0 0.0 NC_045512.2:3075-3203 + 3075 3203 43 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3074;129;0&p=30&e=30&w=0&f=3075-3203", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3075-3203&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.7401604651 0.9431 2.50349831882 -6.28726624132 -15.9869418605 0.246781395365 NA 0.094488035162 0.854504313853 NA 0.706439850236 0.085388246785 0.403100775194 0.0 0.0 NC_045512.2:8480-8545 - 8480 8545 22 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8479;66;0&s=-&p=30&e=30&w=0&f=8480-8545-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8480-8545&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -15.7409454545 1.0 1.22727272727 -12.8259555555 -21.58855 5.8476045455 NA 0.0 0.094488035162 NA 0.629005371968 0.0 0.333333333333 0.0 0.0 NC_045512.2:3048-3203 + 3048 3203 52 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3047;156;0&p=30&e=30&w=0&f=3048-3203", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3048-3203&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.7438461538 0.9437 2.64337807443 -5.95595700293 -16.7805346154 1.03668846158 0.642682728309 0.094488035162 0.80757935862 0.0 0.974706169624 0.0 0.403846153846 0.0 0.0 NC_045512.2:3081-3203 + 3081 3203 41 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3080;123;0&p=30&e=30&w=0&f=3081-3203", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3081-3203&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.7521536585 0.9458 2.47039719464 -6.37636477757 -15.4836926829 -0.268460975573 NA 0.094488035162 0.846758912583 NA 0.857366107765 0.0 0.406504065041 0.0 0.0 NC_045512.2:5733-5780 + 5733 5780 16 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5732;48;0&p=30&e=30&w=0&f=5733-5780", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5733-5780&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.75975 1.0 1.02083333333 -15.438122449 -9.3993625 -6.3603875 NA 0.68944489663 1.0 NA 0.816741006023 0.632775516848 0.395833333333 0.0 0.5625 NC_045512.2:4835-4873 - 4835 4873 13 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4834;39;0&s=-&p=30&e=30&w=0&f=4835-4873-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4835-4873&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -15.7598153846 1.0 1.41025641026 -11.1751418182 -18.5950692308 2.83525384617 NA 0.912111346248 0.890405339411 NA 0.546573335504 0.340901839492 0.282051282051 0.0 0.0 NC_045512.2:20027-20083 + 20027 20083 19 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20026;57;0&p=30&e=30&w=0&f=20027-20083", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20027-20083&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.7603526316 1.0 1.40350877193 -11.22925125 -15.9511105263 0.190757894716 0.915103369689 0.0174377340062 0.0174377340062 0.0174377340062 1.0 0.0174377340062 0.385964912281 0.487179487179 0.0 NC_045512.2:4103-4132 - 4103 4132 10 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4102;30;0&s=-&p=30&e=30&w=0&f=4103-4132-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4103-4132&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -15.76601 1.0 1.8 -8.75889444444 -16.21289 0.44688 NA 0.399384665473 1.0 NA 0.912111346248 0.399384665473 0.366666666667 0.0 0.0 NC_045512.2:6177-6347 + 6177 6347 57 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6176;171;0&p=30&e=30&w=0&f=6177-6347", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6177-6347&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.7661 0.9813 1.2157175418 -12.9685551602 -11.6355245614 -4.1305754386 NA 0.363337131695 0.637655868468 NA 0.695503825492 0.363337131695 0.33918128655 0.621818181818 0.315789473684 NC_045512.2:16862-16891 + 16862 16891 10 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16861;30;0&p=30&e=30&w=0&f=16862-16891", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16862-16891&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.77656 1.0 1.06666666667 -14.790525 -15.57131 -0.20525 NA 1.0 1.0 NA 1.0 1.0 0.333333333333 1.25 0.0 NC_045512.2:3054-3203 + 3054 3203 50 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3053;150;0&p=30&e=30&w=0&f=3054-3203", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3054-3203&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.777688 0.9416 2.66244653074 -5.9260112148 -16.491132 0.713444 0.390053719681 0.094488035162 0.832873188996 0.085388246785 1.0 0.085388246785 0.4 0.0 0.0 NC_045512.2:27668-27712 + 27668 27712 15 NotMaximal AAG NearCognate ORF7a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27667;45;0&p=30&e=30&w=0&f=27668-27712", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27668-27712&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.7867866667 1.0 2.2 -7.17581212123 -9.60752666667 -6.17926000003 NA 0.706439850236 0.706439850236 NA 0.885082207391 0.701116718216 0.333333333333 0.833333333333 0.0 NC_045512.2:7617-7706 + 7617 7706 30 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7616;90;0&p=30&e=30&w=0&f=7617-7706", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7617-7706&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.8064266667 1.0 1.22222222222 -12.9325309091 -11.98104 -3.8253866667 NA 0.390053719681 0.599511639264 NA 0.985720332085 0.094488035162 0.344444444444 0.409090909091 0.0 NC_045512.2:9570-9599 + 9570 9599 10 Maximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9569;30;0&p=30&e=30&w=0&f=9570-9599", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9570-9599&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.80838 1.0 1.26666666667 -12.4803 -11.17424 -4.63414 NA 1.0 1.0 NA 0.390053719681 0.390053719681 0.3 0.0 0.833333333333 NC_045512.2:19006-19122 - 19006 19122 39 Maximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19005;117;0&s=-&p=30&e=30&w=0&f=19006-19122-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19006-19122&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -15.8102846154 1.0 1.5641025641 -10.1082147541 -23.3292641026 7.51897948716 NA 0.225990558359 0.950157903305 NA 0.76600683705 0.0174377340062 0.410256410256 0.203125 0.0 NC_045512.2:27250-27318 - 27250 27318 23 Maximal AUU NearCognate ORF6 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27249;69;0&s=-&p=30&e=30&w=0&f=27250-27318-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27250-27318&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -15.8170478261 0.9982 1.87539050886 -8.43400227921 -23.8751652174 8.05811739129 NA 0.094488035162 0.094488035162 NA 0.706439850236 0.094488035162 0.231884057971 0.0 0.0 NC_045512.2:7581-7706 + 7581 7706 42 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7580;126;0&p=30&e=30&w=0&f=7581-7706", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7581-7706&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.8237095238 1.0 1.2380952381 -12.7806884615 -11.6542595238 -4.16944999999 0.965271040208 0.390053719681 0.599511639264 0.094488035162 1.0 0.094488035162 0.357142857143 0.271551724138 0.0 NC_045512.2:6876-6908 - 6876 6908 11 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6875;33;0&s=-&p=30&e=30&w=0&f=6876-6908-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6876-6908&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -15.8254090909 1.0 2.30303030303 -6.87155921052 -19.4002454545 3.57483636365 0.094488035162 0.706439850236 0.391561126485 0.094488035162 0.094488035162 0.094488035162 0.393939393939 0.916666666667 0.151515151515 NC_045512.2:27250-27288 - 27250 27288 13 NotMaximal AAG NearCognate ORF6 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27249;39;0&s=-&p=30&e=30&w=0&f=27250-27288-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27250-27288&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -15.8384153846 1.0 1.64102564103 -9.65153437499 -22.9998615385 7.16144615386 NA 0.094488035162 0.706439850236 NA 0.706439850236 0.094488035162 0.25641025641 0.0 0.0 NC_045512.2:16320-16352 + 16320 16352 11 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16319;33;0&p=30&e=30&w=0&f=16320-16352", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16320-16352&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.8478 1.0 1.18181818182 -13.4096769231 -17.7782727273 1.93047272727 0.0174377340062 0.968097021 0.0174377340062 0.0174377340062 1.0 0.0174377340062 0.393939393939 0.916666666667 0.0606060606061 NC_045512.2:3117-3203 + 3117 3203 29 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3116;87;0&p=30&e=30&w=0&f=3117-3203", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3117-3203&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.847837931 0.9602 2.3639340386 -6.70401021018 -16.2893827586 0.441544827621 NA 0.094488035162 0.854504313853 NA 0.368347712844 0.085388246785 0.425287356322 0.0 0.0 NC_045512.2:3752-3781 - 3752 3781 10 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3751;30;0&s=-&p=30&e=30&w=0&f=3752-3781-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3752-3781&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -15.84796 1.0 2.66666666667 -5.942985 -24.02717 8.17921 NA 0.964632915514 0.890405339411 NA 0.706439850236 0.67107276575 0.366666666667 1.07142857143 0.0 NC_045512.2:9768-9818 + 9768 9818 17 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9767;51;0&p=30&e=30&w=0&f=9768-9818", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9768-9818&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.8492176471 1.0 1.17647058824 -13.471835 -18.7033294118 2.85411176466 1.0 0.477942373433 1.0 0.477942373433 1.0 0.477942373433 0.411764705882 0.472222222222 0.0 NC_045512.2:5034-5084 + 5034 5084 17 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5033;51;0&p=30&e=30&w=0&f=5034-5084", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5034-5084&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.8502705882 1.0 1.35294117647 -11.7154173913 -12.9160705882 -2.93419999996 0.957919583266 0.094488035162 0.883187367736 0.094488035162 1.0 0.094488035162 0.372549019608 0.0 0.0 NC_045512.2:3066-3203 + 3066 3203 46 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3065;138;0&p=30&e=30&w=0&f=3066-3203", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3066-3203&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.8651673913 0.9397 2.66575828672 -5.95146509357 -15.9151304348 0.0499630434826 NA 0.094488035162 0.832873188996 NA 0.368347712844 0.085388246785 0.405797101449 0.0 0.0 NC_045512.2:12510-12569 + 12510 12569 20 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12509;60;0&p=30&e=30&w=0&f=12510-12569", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12510-12569&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.87001 1.0 1.13333333333 -14.00295 -12.765925 -3.104085 NA 0.307139833957 1.0 NA 0.568686309621 0.258163763633 0.4 0.428571428571 0.283333333333 NC_045512.2:21555-21590 - 21555 21590 12 Maximal GUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21554;36;0&s=-&p=30&e=30&w=0&f=21555-21590-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21555-21590&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -15.87175 0.9915 5.57825551946 -2.84528916695 -12.3299666667 -3.54178333333 NA 0.976141950187 0.884766400781 NA 0.291489500244 0.0174377340062 0.305555555556 1.2 0.0 NC_045512.2:4205-4237 - 4205 4237 11 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4204;33;0&s=-&p=30&e=30&w=0&f=4205-4237-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4205-4237&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -15.8795363636 1.0 2.18181818182 -7.27812083332 -15.7514272727 -0.128109090873 NA 0.226869607684 0.520748819795 NA 0.085388246785 0.0 0.424242424242 0.6875 0.0 NC_045512.2:405-467 - 405 467 21 Maximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;404;63;0&s=-&p=30&e=30&w=0&f=405-467-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:405-467&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -15.880552381 1.0 1.44444444444 -10.9942285715 -18.2951428571 2.41459047614 NA 0.574308969559 0.890405339411 NA 1.0 0.574308969559 0.444444444444 0.328125 0.301587301587 NC_045512.2:1011-1094 + 1011 1094 28 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1010;84;0&p=30&e=30&w=0&f=1011-1094", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1011-1094&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.8859785714 1.0 1.22619047619 -12.9555553398 -16.2945428571 0.408564285743 0.986114276412 0.390053719681 1.0 0.390053719681 1.0 0.390053719681 0.333333333333 0.0 0.0 NC_045512.2:17015-17119 + 17015 17119 35 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17014;105;0&p=30&e=30&w=0&f=17015-17119", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17015-17119&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.8894028571 1.0 1.02857142857 -15.4480305555 -9.82649428571 -6.06290857139 0.775594986163 0.0174377340062 0.884951977861 0.0174377340062 1.0 0.0174377340062 0.4 0.0 0.247619047619 NC_045512.2:3072-3203 + 3072 3203 44 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3071;132;0&p=30&e=30&w=0&f=3072-3203", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3072-3203&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.8913295455 0.9419 2.54869917621 -6.23507461918 -16.4489090909 0.557579545409 NA 0.094488035162 0.854504313853 NA 0.890405339411 0.085388246785 0.409090909091 0.0 0.0 NC_045512.2:25296-25352 - 25296 25352 19 Maximal CUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25295;57;0&s=-&p=30&e=30&w=0&f=25296-25352-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25296-25352&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -15.8989947368 1.0 1.50877192982 -10.5377058139 -19.4115263158 3.51253157899 NA 0.917330294644 1.0 NA 0.720872537848 0.634383851538 0.491228070175 0.304812834225 1.0 NC_045512.2:17276-17341 - 17276 17341 22 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17275;66;0&s=-&p=30&e=30&w=0&f=17276-17341-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17276-17341&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -15.9081818182 1.0 0.939393939394 -16.9345161291 -15.1389454545 -0.769236363655 NA 1.0 0.734588963047 NA 0.364759889305 0.364759889305 0.378787878788 0.428571428571 0.0 NC_045512.2:24026-24151 - 24026 24151 42 NotMaximal AGG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24025;126;0&s=-&p=30&e=30&w=0&f=24026-24151-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24026-24151&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -15.9113738095 1.0 2.01587301587 -7.89304370078 -25.0810119048 9.16963809526 NA 0.454432687612 0.0174377340062 NA 0.704479895816 0.0174377340062 0.420634920635 0.18 0.333333333333 NC_045512.2:6282-6347 + 6282 6347 22 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6281;66;0&p=30&e=30&w=0&f=6282-6347", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6282-6347&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.9122363636 0.9813 1.17345998019 -13.560101437 -11.6149818182 -4.29725454542 NA 0.363337131695 0.637655868468 NA 0.651196483803 0.354237343318 0.378787878788 0.846153846154 0.151515151515 NC_045512.2:15572-15664 + 15572 15664 31 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15571;93;0&p=30&e=30&w=0&f=15572-15664", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15572-15664&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.916716129 1.0 1.13978494624 -13.9646660377 -9.03840322581 -6.87831290319 1.0 0.434351294156 0.674426176135 0.343053882468 1.0 0.343053882468 0.354838709677 0.688888888889 0.0 NC_045512.2:20879-20911 + 20879 20911 11 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20878;33;0&p=30&e=30&w=0&f=20879-20911", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20879-20911&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.9192727273 1.0 1.54545454545 -10.3007058824 -17.6497090909 1.73043636361 NA 0.364759889305 0.772121113462 NA 0.8112388084 0.0174377340062 0.454545454545 0.0 0.0 NC_045512.2:16529-16600 + 16529 16600 24 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16528;72;0&p=30&e=30&w=0&f=16529-16600", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16529-16600&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.9204958333 1.0 1.0 -15.9204958333 -9.449925 -6.4705708333 NA 0.0174377340062 0.0174377340062 NA 0.343053882468 0.0174377340062 0.361111111111 0.45 0.0 NC_045512.2:22394-22441 - 22394 22441 16 NotMaximal AAG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22393;48;0&s=-&p=30&e=30&w=0&f=22394-22441-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22394-22441&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -15.92096875 1.0 3.33333333333 -4.776290625 -28.566325 12.64535625 NA 0.289148624451 0.947478430734 NA 1.0 0.289148624451 0.333333333333 0.0 0.0 NC_045512.2:3057-3203 + 3057 3203 49 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3056;147;0&p=30&e=30&w=0&f=3057-3203", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3057-3203&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.9236755102 0.9404 2.6759658477 -5.95062733103 -16.1200857143 0.196410204086 NA 0.094488035162 0.832873188996 NA 0.996923327364 0.085388246785 0.401360544218 0.0 0.0 NC_045512.2:15137-15175 - 15137 15175 13 Maximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15136;39;0&s=-&p=30&e=30&w=0&f=15137-15175-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15137-15175&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -15.9251 1.0 0.641025641026 -24.843156 -9.29596923077 -6.62913076923 NA 0.890405339411 0.684447338434 NA 0.684447338434 0.684447338434 0.25641025641 0.0 0.358974358974 NC_045512.2:8763-8822 + 8763 8822 20 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8762;60;0&p=30&e=30&w=0&f=8763-8822", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8763-8822&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.928035 1.0 1.68333333333 -9.4621990099 -14.334075 -1.59396 NA 0.548302132509 0.996933094579 NA 0.0174377340062 0.0174377340062 0.416666666667 0.38961038961 0.0 NC_045512.2:901-930 + 901 930 10 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;900;30;0&p=30&e=30&w=0&f=901-930", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:901-930&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.93007 1.0 1.43333333333 -11.1140023256 -23.96213 8.03206 0.0894774540127 0.471369037929 0.253175972652 0.0174377340062 0.701429269087 0.253175972652 0.4 0.857142857143 0.0 NC_045512.2:3069-3203 + 3069 3203 45 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3068;135;0&p=30&e=30&w=0&f=3069-3203", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3069-3203&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.9319488889 0.9408 2.60021024743 -6.1271771791 -16.4413866667 0.509437777767 NA 0.094488035162 0.854504313853 NA 0.592222041348 0.085388246785 0.4 0.0 0.0 NC_045512.2:20786-20818 + 20786 20818 11 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20785;33;0&p=30&e=30&w=0&f=20786-20818", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20786-20818&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.9485727273 1.0 1.12121212121 -14.2244027027 -8.94361818182 -7.00495454548 0.993911769494 1.0 1.0 0.993911769494 1.0 1.0 0.30303030303 1.375 0.787878787879 NC_045512.2:24509-24544 - 24509 24544 12 NotMaximal AUC NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24508;36;0&s=-&p=30&e=30&w=0&f=24509-24544-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24509-24544&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -15.949975 1.0 2.02777777778 -7.86574109589 -29.2737333333 13.3237583333 NA 0.590024418037 0.908357480059 NA 0.655809864887 0.35632101579 0.416666666667 0.72 0.0 NC_045512.2:25907-25981 + 25907 25981 25 NotMaximal GUG NearCognate ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25906;75;0&p=30&e=30&w=0&f=25907-25981", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25907-25981&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.96098 1.0 1.88 -8.48988297872 -12.225848 -3.735132 NA 0.328748168647 0.7743805958 NA 0.890405339411 0.268438873515 0.413333333333 0.0 0.0 NC_045512.2:13700-13756 + 13700 13756 19 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13699;57;0&p=30&e=30&w=0&f=13700-13756", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13700-13756&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.9625105263 1.0 1.19298245614 -13.3803397059 -9.36245789474 -6.60005263156 NA 0.948510499756 0.673322480873 NA 0.763115741494 0.553368061208 0.298245614035 0.0 0.280701754386 NC_045512.2:9201-9326 + 9201 9326 42 Maximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9200;126;0&p=30&e=30&w=0&f=9201-9326", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9201-9326&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.9759285714 1.0 1.34126984127 -11.9110473373 -11.3266428571 -4.64928571426 NA 0.094488035162 0.964483151555 NA 1.0 0.094488035162 0.404761904762 0.217993079585 0.0 NC_045512.2:10269-10397 + 10269 10397 43 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10268;129;0&p=30&e=30&w=0&f=10269-10397", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10269-10397&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.9910674419 1.0 1.09302325581 -14.630125532 -11.2458093023 -4.74525813957 0.987712843887 0.921299039557 0.877717727495 0.799016767052 1.0 0.799016767052 0.372093023256 0.223958333333 0.0 NC_045512.2:18764-18844 + 18764 18844 27 Maximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18763;81;0&p=30&e=30&w=0&f=18764-18844", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18764-18844&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.9959222222 1.0 1.38271604938 -11.5684794643 -4.56306296296 -11.4328592592 NA 0.25216343806 1.0 NA 1.0 0.25216343806 0.395061728395 0.0 0.0123456790123 NC_045512.2:7591-7623 + 7591 7623 11 Maximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7590;33;0&p=30&e=30&w=0&f=7591-7623", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7591-7623&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.9974454545 1.0 1.09090909091 -14.664325 -14.9912363636 -1.00620909086 NA 0.387888653752 0.595337782842 NA 0.481481360899 0.0 0.363636363636 0.0 0.0 NC_045512.2:5352-5408 + 5352 5408 19 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5351;57;0&p=30&e=30&w=0&f=5352-5408", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5352-5408&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -15.9993526316 1.0 1.19298245614 -13.4112220588 -11.4068052632 -4.59254736844 NA 0.0894774540127 1.0 NA 1.0 0.0894774540127 0.421052631579 0.0 0.0 NC_045512.2:19652-19738 + 19652 19738 29 Maximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19651;87;0&p=30&e=30&w=0&f=19652-19738", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19652-19738&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.0023 1.0 1.64367816092 -9.73566503497 -12.6361862069 -3.3661137931 NA 0.670844864073 0.343053882468 NA 0.738661891584 0.343053882468 0.367816091954 0.0 0.0 NC_045512.2:17219-17254 + 17219 17254 12 Maximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17218;36;0&p=30&e=30&w=0&f=17219-17254", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17219-17254&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.008625 1.0 1.02777777778 -15.5759594595 -13.8181416667 -2.19048333333 NA 0.603538987465 0.706439850236 NA 0.621842747843 0.601393455966 0.388888888889 1.5 0.0 NC_045512.2:3098-3172 - 3098 3172 25 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3097;75;0&s=-&p=30&e=30&w=0&f=3098-3172-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3098-3172&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -16.01454 0.9686 2.35564889485 -6.79835608568 -18.280696 2.266156 NA 0.085388246785 0.368347712844 NA 0.851225785447 0.0 0.4 0.0 0.0 NC_045512.2:29074-29160 + 29074 29160 29 Maximal AUA NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29073;87;0&p=30&e=30&w=0&f=29074-29160", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29074-29160&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.0179586207 1.0 1.24137931034 -12.9033555556 -14.5358931034 -1.48206551725 NA 1.0 0.666716587986 NA 0.0174377340062 0.0174377340062 0.448275862069 0.457894736842 0.0 NC_045512.2:7620-7706 + 7620 7706 29 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7619;87;0&p=30&e=30&w=0&f=7620-7706", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7620-7706&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.0262655172 1.0 1.25287356322 -12.791606422 -12.1625551724 -3.86371034479 NA 0.390053719681 0.599511639264 NA 0.0174377340062 0.0174377340062 0.35632183908 0.395454545455 0.0 NC_045512.2:3051-3203 + 3051 3203 51 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3050;153;0&p=30&e=30&w=0&f=3051-3203", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3051-3203&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.0280196078 0.9427 2.66906522622 -6.00510600129 -16.5990490196 0.571029411808 NA 0.094488035162 0.832873188996 NA 1.0 0.085388246785 0.40522875817 0.0 0.0 NC_045512.2:9529-9615 + 9529 9615 29 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9528;87;0&p=30&e=30&w=0&f=9529-9615", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9529-9615&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.0510103448 1.0 1.29885057471 -12.3578575221 -15.1281068966 -0.922903448248 NA 0.916877747029 0.738300504639 NA 0.094488035162 0.094488035162 0.310344827586 0.0 0.701149425287 NC_045512.2:4800-4832 + 4800 4832 11 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4799;33;0&p=30&e=30&w=0&f=4800-4832", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4800-4832&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.0557090909 1.0 1.72727272727 -9.29541052631 -13.7243727273 -2.33133636363 NA 0.912111346248 1.0 NA 0.368347712844 0.094488035162 0.393939393939 0.0 0.0 NC_045512.2:972-1094 + 972 1094 41 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;971;123;0&p=30&e=30&w=0&f=972-1094", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:972-1094&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.057504878 1.0 1.32520325203 -12.1170128834 -16.6656512195 0.608146341512 1.0 0.390053719681 0.88767051929 0.094488035162 1.0 0.094488035162 0.357723577236 0.5125 0.0 NC_045512.2:15473-15664 + 15473 15664 64 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15472;192;0&p=30&e=30&w=0&f=15473-15664", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15473-15664&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.059303125 1.0 1.10416666667 -14.5442745283 -11.850196875 -4.20910625 NA 0.434351294156 0.343053882468 NA 0.912111346248 0.0174377340062 0.380208333333 0.432432432432 0.0 NC_045512.2:29325-29372 - 29325 29372 16 Maximal CUG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29324;48;0&s=-&p=30&e=30&w=0&f=29325-29372-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29325-29372&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -16.0705125 1.0 0.875 -18.3663 -19.054425 2.9839125 NA 1.0 0.679280481849 NA 0.890405339411 0.679280481849 0.375 0.666666666667 0.0 NC_045512.2:4835-4888 - 4835 4888 18 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4834;54;0&s=-&p=30&e=30&w=0&f=4835-4888-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4835-4888&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -16.0875388889 1.0 1.77777777778 -9.04924062501 -20.7559 4.6683611111 NA 0.912111346248 0.80092462966 NA 0.283985023604 0.283985023604 0.296296296296 0.0 0.0 NC_045512.2:7551-7706 + 7551 7706 52 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7550;156;0&p=30&e=30&w=0&f=7551-7706", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7551-7706&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.0881288462 1.0 1.23076923077 -13.0716046875 -12.0791730769 -4.00895576928 NA 0.390053719681 0.094488035162 NA 0.094488035162 0.094488035162 0.358974358974 0.216666666667 0.0 NC_045512.2:17348-17386 + 17348 17386 13 Maximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17347;39;0&p=30&e=30&w=0&f=17348-17386", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17348-17386&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.0885384615 1.0 0.923076923077 -17.42925 -7.09059230769 -8.99794615381 NA 1.0 0.530372782028 NA 0.22944489663 0.22944489663 0.282051282051 0.0 0.0 NC_045512.2:12634-12687 + 12634 12687 18 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12633;54;0&p=30&e=30&w=0&f=12634-12687", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12634-12687&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.0913333333 1.0 0.925925925926 -17.37864 -12.6411888889 -3.45014444441 0.0174377340062 0.957711216018 0.917157740518 0.0174377340062 1.0 0.880957187042 0.388888888889 0.0 0.0 NC_045512.2:19006-19074 - 19006 19074 23 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19005;69;0&s=-&p=30&e=30&w=0&f=19006-19074-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19006-19074&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -16.0992 1.0 1.44927536232 -11.108448 -23.3579565217 7.25875652174 NA 0.225990558359 0.950157903305 NA 0.41312388084 0.0174377340062 0.420289855072 0.338235294118 0.0 NC_045512.2:20960-21007 - 20960 21007 16 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20959;48;0&s=-&p=30&e=30&w=0&f=20960-21007-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20960-21007&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -16.108375 1.0 1.10416666667 -14.5887169811 -14.90205625 -1.20631875 NA 0.67340061859 0.390053719681 NA 0.778772586684 0.0174377340062 0.375 0.0 0.0 NC_045512.2:10245-10397 + 10245 10397 51 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10244;153;0&p=30&e=30&w=0&f=10245-10397", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10245-10397&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.1253392157 1.0 1.09803921569 -14.6855767857 -10.9075333333 -5.21780588237 NA 0.921299039557 0.877717727495 NA 1.0 0.799016767052 0.372549019608 0.188888888889 0.0 NC_045512.2:9204-9326 + 9204 9326 41 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9203;123;0&p=30&e=30&w=0&f=9204-9326", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9204-9326&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.1259414634 1.0 1.37398373984 -11.7366319527 -11.7345439024 -4.39139756096 NA 0.094488035162 0.964483151555 NA 1.0 0.094488035162 0.406504065041 0.219251336898 0.0 NC_045512.2:1128-1226 + 1128 1226 33 Maximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1127;99;0&p=30&e=30&w=0&f=1128-1226", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1128-1226&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.1293393939 1.0 1.59595959596 -10.1063582278 -14.467369697 -1.66196969693 NA 1.0 0.498420966954 NA 1.0 0.498420966954 0.393939393939 0.521052631579 0.171717171717 NC_045512.2:10635-10667 + 10635 10667 11 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10634;33;0&p=30&e=30&w=0&f=10635-10667", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10635-10667&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.1364545455 1.0 1.33333333333 -12.1023409091 -10.3311818182 -5.80527272732 NA 0.457834934071 0.368347712844 NA 0.646404037115 0.094488035162 0.363636363636 0.916666666667 0.0 NC_045512.2:3681-3749 + 3681 3749 23 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3680;69;0&p=30&e=30&w=0&f=3681-3749", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3681-3749&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.1379086957 1.0 2.04347826087 -7.89727446811 -12.4611826087 -3.676726087 NA 0.7689825818 0.912111346248 NA 0.840146508221 0.393817353085 0.391304347826 0.392045454545 0.0 NC_045512.2:4050-4100 + 4050 4100 17 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4049;51;0&p=30&e=30&w=0&f=4050-4100", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4050-4100&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.1394235294 0.9948 2.17008826696 -7.43721984727 -9.18052941176 -6.95889411764 NA 0.424678495849 0.725866840306 NA 0.368347712844 0.094488035162 0.392156862745 0.0 0.0 NC_045512.2:17048-17119 + 17048 17119 24 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17047;72;0&p=30&e=30&w=0&f=17048-17119", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17048-17119&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.1442 1.0 1.13888888889 -14.175395122 -11.3296041667 -4.81459583333 NA 0.0174377340062 0.912111346248 NA 0.997883770145 0.0174377340062 0.458333333333 0.0 0.0 NC_045512.2:20221-20256 - 20221 20256 12 Maximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20220;36;0&s=-&p=30&e=30&w=0&f=20221-20256-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20221-20256&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -16.1455 1.0 1.47222222222 -10.966754717 -14.5111166667 -1.63438333333 NA 0.948334689891 0.0174377340062 NA 0.528044929188 0.0174377340062 0.333333333333 0.0 0.0 NC_045512.2:4032-4100 + 4032 4100 23 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4031;69;0&p=30&e=30&w=0&f=4032-4100", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4032-4100&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.1528695652 0.9962 1.92281886399 -8.40061945913 -8.8279826087 -7.3248869565 NA 0.424678495849 0.725866840306 NA 0.986729610939 0.094488035162 0.36231884058 0.0 0.0 NC_045512.2:1194-1226 + 1194 1226 11 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1193;33;0&p=30&e=30&w=0&f=1194-1226", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1194-1226&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.1531363636 1.0 1.75757575758 -9.19057758619 -11.8763818182 -4.27675454542 0.292749470943 1.0 0.586309620706 0.292749470943 0.964613381084 0.586309620706 0.393939393939 0.0 0.0 NC_045512.2:9042-9080 + 9042 9080 13 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9041;39;0&p=30&e=30&w=0&f=9042-9080", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9042-9080&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.1577 1.0 1.02564102564 -15.7537575 -12.3992538462 -3.75844615385 NA 0.529425362201 1.0 NA 0.571955070812 0.278394921048 0.384615384615 0.0 0.0 NC_045512.2:25110-25139 + 25110 25139 10 NotMaximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25109;30;0&p=30&e=30&w=0&f=25110-25139", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25110-25139&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.16122 1.0 1.23333333333 -13.1036918919 -10.18138 -5.97984 NA 1.0 0.883444571056 NA 1.0 0.883444571056 0.466666666667 0.612244897959 1.0 NC_045512.2:10972-11085 + 10972 11085 38 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10971;114;0&p=30&e=30&w=0&f=10972-11085", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10972-11085&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.1780973684 1.0 1.32456140351 -12.2139278146 -16.3759236842 0.197826315811 NA 0.73288295621 0.094488035162 NA 0.94439850236 0.094488035162 0.350877192982 0.0 0.0 NC_045512.2:16027-16065 - 16027 16065 13 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16026;39;0&s=-&p=30&e=30&w=0&f=16027-16065-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16027-16065&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -16.1874307692 1.0 1.46153846154 -11.0756105263 -30.2120538462 14.024623077 NA 0.845205925444 1.0 NA 1.0 0.845205925444 0.384615384615 0.0 0.0 NC_045512.2:7590-7706 + 7590 7706 39 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7589;117;0&p=30&e=30&w=0&f=7590-7706", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7590-7706&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.1906307692 1.0 1.23076923077 -13.1548875 -12.0576897436 -4.13294102561 NA 0.390053719681 0.599511639264 NA 0.828969558847 0.094488035162 0.350427350427 0.2925 0.0 NC_045512.2:3060-3203 + 3060 3203 48 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3059;144;0&p=30&e=30&w=0&f=3060-3203", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3060-3203&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.1950354167 0.9392 2.6553262473 -6.09907555923 -16.1009979167 -0.0940375000333 NA 0.094488035162 0.832873188996 NA 0.343053882468 0.0 0.402777777778 0.0 0.0 NC_045512.2:5284-5334 + 5284 5334 17 Maximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5283;51;0&p=30&e=30&w=0&f=5284-5334", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5284-5334&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.2034294118 1.0 1.56862745098 -10.32968625 -18.8847882353 2.68135882349 NA 0.854071300667 0.094488035162 NA 1.0 0.094488035162 0.372549019608 0.0 0.0 NC_045512.2:7542-7706 + 7542 7706 55 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7541;165;0&p=30&e=30&w=0&f=7542-7706", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7542-7706&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.2185236364 1.0 1.21212121212 -13.380282 -11.5710290909 -4.64749454549 NA 0.390053719681 0.094488035162 NA 0.766452873189 0.094488035162 0.351515151515 0.217105263158 0.0 NC_045512.2:17612-17713 + 17612 17713 34 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17611;102;0&p=30&e=30&w=0&f=17612-17713", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17612-17713&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.2249176471 1.0 1.16666666667 -13.9070722689 -14.2984617647 -1.92645588239 NA 0.706439850236 0.0 NA 0.979023278528 0.0 0.333333333333 0.354166666667 0.0 NC_045512.2:7569-7706 + 7569 7706 46 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7568;138;0&p=30&e=30&w=0&f=7569-7706", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7569-7706&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.2276891304 1.0 1.25362318841 -12.9446306358 -11.3617456522 -4.86594347823 0.812834120137 0.390053719681 0.599511639264 0.094488035162 1.0 0.094488035162 0.355072463768 0.247311827957 0.0 NC_045512.2:15491-15664 + 15491 15664 58 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15490;174;0&p=30&e=30&w=0&f=15491-15664", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15491-15664&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.2277137931 1.0 1.06896551724 -15.1807645161 -10.5914017241 -5.63631206896 0.983005046394 0.434351294156 0.343053882468 0.343053882468 1.0 0.343053882468 0.362068965517 0.526209677419 0.0 NC_045512.2:16202-16276 + 16202 16276 25 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16201;75;0&p=30&e=30&w=0&f=16202-16276", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16202-16276&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.22836 1.0 1.05333333333 -15.4066708861 -12.45274 -3.77562 0.975347550057 0.0174377340062 0.0894774540127 0.0174377340062 1.0 0.0174377340062 0.453333333333 0.259515570934 0.0 NC_045512.2:24228-24326 + 24228 24326 33 NotMaximal GUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24227;99;0&p=30&e=30&w=0&f=24228-24326", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24228-24326&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.2302818182 1.0 1.16161616162 -13.9721556522 -11.3165848485 -4.91369696972 NA 0.25216343806 0.848933745727 NA 0.890405339411 0.25216343806 0.363636363636 0.0 0.484848484848 NC_045512.2:28804-28839 + 28804 28839 12 NotMaximal AGG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28803;36;0&p=30&e=30&w=0&f=28804-28839", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28804-28839&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.230675 1.0 1.30555555556 -12.432006383 -7.6598 -8.570875 NA 1.0 0.855441966466 NA 0.649770470454 0.649770470454 0.583333333333 1.03846153846 0.0 NC_045512.2:20771-20845 - 20771 20845 25 Maximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20770;75;0&s=-&p=30&e=30&w=0&f=20771-20845-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20771-20845&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -16.239508 1.0 0.946666666667 -17.1544098592 -13.5955 -2.644008 NA 0.094488035162 0.0 NA 1.0 0.0 0.32 0.535714285714 0.36 NC_045512.2:19352-19393 - 19352 19393 14 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19351;42;0&s=-&p=30&e=30&w=0&f=19352-19393-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19352-19393&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -16.2473571429 1.0 1.40476190476 -11.5659152543 -25.1675071429 8.92014999996 0.0174377340062 0.746189158392 0.975972651799 0.0174377340062 1.0 0.678027022627 0.261904761905 0.0 0.0 NC_045512.2:3098-3190 - 3098 3190 31 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3097;93;0&s=-&p=30&e=30&w=0&f=3098-3190-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3098-3190&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -16.2482645161 0.9535 2.40536976275 -6.75499657797 -16.8702774194 0.622012903255 NA 0.085388246785 0.333954094091 NA 0.085388246785 0.0 0.408602150538 0.0 0.0 NC_045512.2:9789-9818 + 9789 9818 10 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9788;30;0&p=30&e=30&w=0&f=9789-9818", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9789-9818&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.25306 1.0 1.4 -11.6093285714 -23.51813 7.26507 NA 0.477942373433 1.0 NA 0.758433989907 0.477942373433 0.466666666667 0.625 0.0 NC_045512.2:25928-25999 - 25928 25999 24 Maximal AUA NearCognate ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25927;72;0&s=-&p=30&e=30&w=0&f=25928-25999-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25928-25999&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -16.2555916667 1.0 1.52777777778 -10.6400236364 -16.5115541667 0.255962499967 NA 0.364759889305 0.289838840957 NA 0.477942373433 0.0174377340062 0.361111111111 0.0 0.0 NC_045512.2:24237-24326 + 24237 24326 30 NotMaximal CUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24236;90;0&p=30&e=30&w=0&f=24237-24326", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24237-24326&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.2584966667 1.0 1.08888888889 -14.931272449 -10.3938466667 -5.86465000003 NA 0.25216343806 0.848933745727 NA 0.800618590265 0.094488035162 0.333333333333 0.0 0.533333333333 NC_045512.2:4334-4369 - 4334 4369 12 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4333;36;0&s=-&p=30&e=30&w=0&f=4334-4369-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4334-4369&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -16.2627916667 1.0 2.02777777778 -8.02000684933 -12.592025 -3.6707666667 NA 0.979550708123 0.0174377340062 NA 0.323187367736 0.0174377340062 0.305555555556 0.0 0.0 NC_045512.2:4420-4449 + 4420 4449 10 NotMaximal ACG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4419;30;0&p=30&e=30&w=0&f=4420-4449", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4420-4449&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.26604 1.0 1.76666666667 -9.20719245283 -22.01945 5.75341 NA 0.906863096207 0.672046231483 NA 0.697340061859 0.57890932769 0.433333333333 0.714285714286 0.0 NC_045512.2:24674-24709 - 24674 24709 12 NotMaximal AAG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24673;36;0&s=-&p=30&e=30&w=0&f=24674-24709-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24674-24709&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -16.26825 1.0 1.83333333333 -8.87359090909 -23.646775 7.378525 NA 0.619283737587 0.814090835097 NA 0.511134624776 0.438756307993 0.333333333333 0.0 0.583333333333 NC_045512.2:19006-19068 - 19006 19068 21 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19005;63;0&s=-&p=30&e=30&w=0&f=19006-19068-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19006-19068&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -16.2722142857 1.0 1.44444444444 -11.2653791209 -24.7261333333 8.45391904763 NA 0.225990558359 0.950157903305 NA 1.0 0.225990558359 0.412698412698 0.39375 0.0 NC_045512.2:24026-24163 - 24026 24163 46 NotMaximal AUC NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24025;138;0&s=-&p=30&e=30&w=0&f=24026-24163-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24026-24163&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -16.2727152174 1.0 2.03623188406 -7.99158256228 -25.1436152174 8.87089999999 NA 0.454432687612 0.0174377340062 NA 0.85680286505 0.0174377340062 0.420289855072 0.164874551971 0.304347826087 NC_045512.2:5856-5891 - 5856 5891 12 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5855;36;0&s=-&p=30&e=30&w=0&f=5856-5891-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5856-5891&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -16.2773666667 1.0 1.22222222222 -13.3178454546 -14.367575 -1.9097916667 NA 0.390053719681 0.562239947908 NA 0.939391176949 0.390053719681 0.333333333333 1.02857142857 0.0 NC_045512.2:2391-2462 + 2391 2462 24 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2390;72;0&p=30&e=30&w=0&f=2391-2462", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:2391-2462&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.2837708333 1.0 2.04166666667 -7.97572448978 -15.4963416667 -0.787429166633 NA 0.476714960117 0.899749308156 NA 0.262939931629 0.094488035162 0.444444444444 0.28125 0.0 NC_045512.2:12960-13013 - 12960 13013 18 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12959;54;0&s=-&p=30&e=30&w=0&f=12960-13013-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12960-13013&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -16.2846777778 1.0 1.03703703704 -15.7030821429 -19.1472388889 2.86256111109 NA 0.890405339411 0.355660100928 NA 1.0 0.0 0.388888888889 0.0 0.796296296296 NC_045512.2:19006-19095 - 19006 19095 30 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19005;90;0&s=-&p=30&e=30&w=0&f=19006-19095-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19006-19095&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -16.2883833333 1.0 1.51111111111 -10.7790772059 -22.3791133333 6.09073000003 NA 0.225990558359 0.950157903305 NA 0.857069835585 0.216890769982 0.4 0.277777777778 0.0 NC_045512.2:6616-6654 + 6616 6654 13 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6615;39;0&p=30&e=30&w=0&f=6616-6654", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6616-6654&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.2903384615 1.0 1.51282051282 -10.7681898305 -23.6556076923 7.36526923081 NA 0.813755494058 0.956936350317 NA 0.861852515058 0.675608009116 0.435897435897 0.0 0.0 NC_045512.2:10362-10397 + 10362 10397 12 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10361;36;0&p=30&e=30&w=0&f=10362-10397", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10362-10397&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.3030583333 1.0 1.27777777778 -12.7589152174 -12.8846416667 -3.41841666663 NA 0.921299039557 1.0 NA 1.0 0.921299039557 0.416666666667 0.642857142857 0.0 NC_045512.2:9033-9122 - 9033 9122 30 Maximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9032;90;0&s=-&p=30&e=30&w=0&f=9033-9122-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9033-9122&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -16.31452 1.0 1.14444444444 -14.2554058252 -14.9937566667 -1.32076333333 NA 1.0 0.0 NA 0.0883998046557 0.0 0.4 0.277777777778 0.0 NC_045512.2:12519-12569 + 12519 12569 17 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12518;51;0&p=30&e=30&w=0&f=12519-12569", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12519-12569&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.3263529412 1.0 1.21568627451 -13.4297419355 -13.9949647059 -2.33138823532 0.890405339411 0.307139833957 1.0 0.307139833957 1.0 0.307139833957 0.392156862745 0.0 0.156862745098 NC_045512.2:3120-3203 + 3120 3203 28 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3119;84;0&p=30&e=30&w=0&f=3120-3203", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3120-3203&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.3366464286 0.9588 2.42455073046 -6.73800973655 -15.8777535714 -0.458892857171 NA 0.094488035162 0.854504313853 NA 1.0 0.085388246785 0.416666666667 0.0 0.0 NC_045512.2:5748-5780 + 5748 5780 11 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5747;33;0&p=30&e=30&w=0&f=5748-5780", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5748-5780&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.3464181818 1.0 1.0 -16.3464181818 -6.3891 -9.9573181818 NA 0.68944489663 1.0 NA 0.890405339411 0.68944489663 0.363636363636 0.0 0.69696969697 NC_045512.2:26671-26706 - 26671 26706 12 NotMaximal AAG NearCognate M =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26670;36;0&s=-&p=30&e=30&w=0&f=26671-26706-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26671-26706&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -16.3524916667 1.0 1.13888888889 -14.3582853659 -14.4862166667 -1.86627500003 NA 0.27465733355 0.706439850236 NA 0.890405339411 0.27465733355 0.388888888889 0.0 0.0 NC_045512.2:3362-3442 - 3362 3442 27 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3361;81;0&s=-&p=30&e=30&w=0&f=3362-3442-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3362-3442&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -16.3734592593 1.0 1.9012345679 -8.61201428574 -26.0530555556 9.67959629626 NA 0.649770470454 0.974706169624 NA 0.969282109718 0.594927559824 0.308641975309 0.0 0.0 NC_045512.2:10957-11085 + 10957 11085 43 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10956;129;0&p=30&e=30&w=0&f=10957-11085", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10957-11085&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.3762465116 1.0 1.32558139535 -12.3540105263 -16.3008697674 -0.0753767441581 NA 0.73288295621 0.094488035162 NA 0.368347712844 0.094488035162 0.356589147287 0.0 0.0 NC_045512.2:10248-10397 + 10248 10397 50 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10247;150;0&p=30&e=30&w=0&f=10248-10397", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10248-10397&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.37917 1.0 1.12 -14.6242589286 -10.666626 -5.712544 NA 0.921299039557 0.877717727495 NA 0.477942373433 0.355660100928 0.38 0.185185185185 0.0 NC_045512.2:9036-9080 + 9036 9080 15 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9035;45;0&p=30&e=30&w=0&f=9036-9080", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9036-9080&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.3821066667 1.0 1.11111111111 -14.743896 -11.8766333333 -4.50547333337 0.9341592056 0.529425362201 1.0 0.521103695263 1.0 0.529425362201 0.377777777778 0.0 0.0 NC_045512.2:19955-20011 + 19955 20011 19 Maximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19954;57;0&p=30&e=30&w=0&f=19955-20011", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19955-20011&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.3883473684 1.0 1.45614035088 -11.2546481928 -18.0080526316 1.61970526318 NA 0.623232948071 1.0 NA 0.88767051929 0.620498127951 0.421052631579 0.407142857143 0.0 NC_045512.2:15500-15664 + 15500 15664 55 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15499;165;0&p=30&e=30&w=0&f=15500-15664", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15500-15664&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.4081690909 1.0 1.08484848485 -15.1248486033 -10.8207163636 -5.58745272726 NA 0.434351294156 0.343053882468 NA 1.0 0.343053882468 0.357575757576 0.568965517241 0.0 NC_045512.2:17621-17713 + 17621 17713 31 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17620;93;0&p=30&e=30&w=0&f=17621-17713", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17621-17713&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.4101258065 1.0 1.18279569892 -13.8740154546 -12.9786290323 -3.43149677424 NA 0.706439850236 0.463805958001 NA 0.850170926258 0.45746703565 0.344086021505 0.364705882353 0.0 NC_045512.2:7287-7364 + 7287 7364 26 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7286;78;0&p=30&e=30&w=0&f=7287-7364", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7287-7364&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.4167653846 1.0 1.0641025641 -15.4278036144 -11.9941384615 -4.42262692306 NA 0.390053719681 0.094488035162 NA 0.514253622009 0.094488035162 0.333333333333 0.0 0.346153846154 NC_045512.2:930-1094 + 930 1094 55 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;929;165;0&p=30&e=30&w=0&f=930-1094", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:930-1094&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.4228727273 1.0 1.34545454545 -12.2061891892 -14.3487945455 -2.07407818185 NA 0.390053719681 0.88767051929 NA 0.471369037929 0.094488035162 0.393939393939 0.477799227799 0.0 NC_045512.2:3098-3199 - 3098 3199 34 Maximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3097;102;0&s=-&p=30&e=30&w=0&f=3098-3199-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3098-3199&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -16.4335882353 0.9576 2.34999399937 -6.99303412678 -16.0524205882 -0.381167647065 NA 0.085388246785 0.333954094091 NA 0.25216343806 0.0 0.401960784314 0.0 0.0 NC_045512.2:27966-28019 - 27966 28019 18 NotMaximal AUA NearCognate ORF8 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27965;54;0&s=-&p=30&e=30&w=0&f=27966-28019-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27966-28019&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -16.4404166667 0.6964 4.69875823521 -3.4988854169 -14.0741111111 -2.36630555559 NA 0.094488035162 0.916102881328 NA 0.633267133322 0.0174377340062 0.388888888889 0.551020408163 0.0 NC_045512.2:3098-3175 - 3098 3175 26 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3097;78;0&s=-&p=30&e=30&w=0&f=3098-3175-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3098-3175&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -16.4450153846 0.967 2.37550111754 -6.92275632419 -18.4294192308 1.98440384617 NA 0.085388246785 0.343053882468 NA 0.0174377340062 0.0 0.397435897436 0.0 0.0 NC_045512.2:16964-17119 + 16964 17119 52 Maximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16963;156;0&p=30&e=30&w=0&f=16964-17119", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16964-17119&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.4533596154 1.0 1.04487179487 -15.7467736196 -11.4382673077 -5.01509230771 NA 0.0174377340062 0.276955884747 NA 1.0 0.0174377340062 0.391025641026 0.0 0.282051282051 NC_045512.2:27966-28013 - 27966 28013 16 NotMaximal GUG NearCognate ORF8 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27965;48;0&s=-&p=30&e=30&w=0&f=27966-28013-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27966-28013&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -16.45390625 0.6984 4.64290235503 -3.54388375887 -11.32655 -5.12735625 NA 0.094488035162 0.916102881328 NA 0.536184274784 0.094488035162 0.416666666667 0.527472527473 0.0 NC_045512.2:24728-24775 - 24728 24775 16 NotMaximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24727;48;0&s=-&p=30&e=30&w=0&f=24728-24775-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24728-24775&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -16.456125 1.0 2.0625 -7.97872727273 -27.3414125 10.8852875 NA 0.25216343806 0.443317597265 NA 1.0 0.0174377340062 0.479166666667 0.0 0.0 NC_045512.2:24234-24326 + 24234 24326 31 NotMaximal GUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24233;93;0&p=30&e=30&w=0&f=24234-24326", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24234-24326&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.4596193548 1.0 1.13978494624 -14.4409867924 -10.9349516129 -5.5246677419 NA 0.25216343806 0.848933745727 NA 0.864258505616 0.246970535569 0.344086021505 0.0 0.516129032258 NC_045512.2:4381-4449 + 4381 4449 23 Maximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4380;69;0&p=30&e=30&w=0&f=4381-4449", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4381-4449&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.4603913043 1.0 1.55072463768 -10.6146448598 -21.5264652174 5.06607391309 NA 0.906863096207 0.325892886212 NA 1.0 0.270144880352 0.420289855072 0.676470588235 0.0 NC_045512.2:11750-11818 - 11750 11818 23 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;11749;69;0&s=-&p=30&e=30&w=0&f=11750-11818-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:11750-11818&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -16.4691869565 1.0 1.04347826087 -15.7829708333 -18.6224434783 2.15325652176 NA 0.0 0.857405176624 NA 0.539635357317 0.0 0.434782608696 0.0 0.0 NC_045512.2:4797-4832 + 4797 4832 12 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4796;36;0&p=30&e=30&w=0&f=4797-4832", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4797-4832&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.47075 1.0 1.66666666667 -9.88245 -14.85705 -1.6137 NA 0.912111346248 1.0 NA 0.621250203484 0.621250203484 0.361111111111 0.0 0.0 NC_045512.2:25062-25091 + 25062 25091 10 Maximal GUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25061;30;0&p=30&e=30&w=0&f=25062-25091", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25062-25091&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.47349 1.0 1.2 -13.7279083333 -10.75408 -5.71941 NA 0.0 0.912111346248 NA 0.368347712844 0.0 0.433333333333 0.0 1.0 NC_045512.2:9012-9080 + 9012 9080 23 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9011;69;0&p=30&e=30&w=0&f=9012-9080", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9012-9080&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.4765652174 1.0 1.08695652174 -15.15844 -12.2395130435 -4.23705217392 NA 0.529425362201 1.0 NA 0.94439850236 0.529425362201 0.347826086957 0.0 0.0 NC_045512.2:8640-8684 + 8640 8684 15 Maximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8639;45;0&p=30&e=30&w=0&f=8640-8684", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8640-8684&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.4795533333 1.0 1.91111111111 -8.62302209301 -15.6156133333 -0.863939999967 NA 0.477405176624 0.706439850236 NA 0.094488035162 0.094488035162 0.333333333333 0.0 0.0 NC_045512.2:25892-25981 + 25892 25981 30 Maximal UUG NearCognate ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25891;90;0&p=30&e=30&w=0&f=25892-25981", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25892-25981&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.4816133333 1.0 2.02222222222 -8.15024835163 -12.1409833333 -4.34062999997 NA 0.328748168647 0.745938466547 NA 0.607104020837 0.22944489663 0.4 0.0 0.0 NC_045512.2:11847-11888 - 11847 11888 14 Maximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;11846;42;0&s=-&p=30&e=30&w=0&f=11847-11888-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:11847-11888&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -16.4825142857 1.0 1.07142857143 -15.38368 -15.5682428571 -0.914271428557 NA 0.825710564871 0.890405339411 NA 0.764554777796 0.611896467524 0.380952380952 0.0 0.0 NC_045512.2:349-402 + 349 402 18 Maximal ACG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;348;54;0&p=30&e=30&w=0&f=349-402", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:349-402&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.4852277778 1.0 1.24074074074 -13.2866014926 -15.6790666667 -0.806161111133 NA 0.560423245971 0.094488035162 NA 0.730346736122 0.094488035162 0.537037037037 0.794117647059 0.0 NC_045512.2:27674-27712 + 27674 27712 13 NotMaximal AAG NearCognate ORF7a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27673;39;0&p=30&e=30&w=0&f=27674-27712", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27674-27712&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.4944538462 1.0 2.25641025641 -7.31004204547 -13.1327461538 -3.36170769235 NA 0.706439850236 0.706439850236 NA 1.0 0.706439850236 0.333333333333 0.975 0.0 NC_045512.2:894-1094 + 894 1094 67 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;893;201;0&p=30&e=30&w=0&f=894-1094", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:894-1094&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.5134626866 1.0 1.407960199 -11.7286431096 -15.5402671642 -0.973195522421 NA 0.390053719681 0.886501709263 NA 0.094488035162 0.094488035162 0.398009950249 0.505342551854 0.0 NC_045512.2:9207-9326 + 9207 9326 40 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9206;120;0&p=30&e=30&w=0&f=9207-9326", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9207-9326&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.513815 1.0 1.4 -11.7955821429 -11.2615875 -5.2522275 NA 0.094488035162 0.964483151555 NA 0.736490314179 0.0174377340062 0.416666666667 0.213903743316 0.0 NC_045512.2:6261-6356 - 6261 6356 32 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6260;96;0&s=-&p=30&e=30&w=0&f=6261-6356-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6261-6356&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -16.514834375 0.9813 1.31628241198 -12.5465737631 -13.10070625 -3.414128125 NA 0.544844538499 0.444590590916 NA 0.343053882468 0.0 0.375 0.888888888889 0.197916666667 NC_045512.2:17276-17338 - 17276 17338 21 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17275;63;0&s=-&p=30&e=30&w=0&f=17276-17338-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17276-17338&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -16.5155 1.0 0.952380952381 -17.341275 -15.8568333333 -0.658666666667 NA 1.0 0.734588963047 NA 0.0 0.0 0.365079365079 0.484615384615 0.0 NC_045512.2:17114-17158 - 17114 17158 15 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17113;45;0&s=-&p=30&e=30&w=0&f=17114-17158-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17114-17158&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -16.5174333333 1.0 1.17777777778 -14.024235849 -12.8766733333 -3.64075999997 NA 0.479749308156 1.0 NA 0.765127787726 0.446443105974 0.488888888889 0.401785714286 0.0 NC_045512.2:24568-24600 + 24568 24600 11 NotMaximal AAG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24567;33;0&p=30&e=30&w=0&f=24568-24600", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24568-24600&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.5212 1.0 1.27272727273 -12.9809428571 -17.9323272727 1.41112727273 NA 0.240481849259 1.0 NA 0.573097834934 0.0174377340062 0.30303030303 0.0 0.969696969697 NC_045512.2:10920-10979 + 10920 10979 20 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10919;60;0&p=30&e=30&w=0&f=10920-10979", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10920-10979&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.522645 1.0 1.08333333333 -15.2516723077 -15.18822 -1.334425 0.864847794237 0.094488035162 0.595021976233 0.094488035162 1.0 0.094488035162 0.366666666667 0.0 0.0 NC_045512.2:25147-25179 + 25147 25179 11 Maximal AUC NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25146;33;0&p=30&e=30&w=0&f=25147-25179", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25147-25179&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.5236363636 1.0 1.36363636364 -12.1173333333 -20.8068 4.2831636364 NA 1.0 0.343053882468 NA 0.841614846166 0.343053882468 0.393939393939 0.825 0.757575757576 NC_045512.2:17762-17797 + 17762 17797 12 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17761;36;0&p=30&e=30&w=0&f=17762-17797", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17762-17797&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.5292666667 1.0 1.02777777778 -16.0825297298 -12.2973083333 -4.23195833337 NA 0.565577079603 1.0 NA 0.984346410549 0.549923490151 0.333333333333 0.0 0.0 NC_045512.2:12741-12821 - 12741 12821 27 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12740;81;0&s=-&p=30&e=30&w=0&f=12741-12821-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12741-12821&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -16.5349111111 1.0 1.28395061728 -12.8781519231 -20.1423703704 3.60745925927 NA 0.832462965978 0.580322318086 NA 1.0 0.412785284063 0.41975308642 0.280276816609 0.0 NC_045512.2:7089-7148 + 7089 7148 20 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7088;60;0&p=30&e=30&w=0&f=7089-7148", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7089-7148&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.53699 1.0 1.66666666667 -9.922194 -13.76224 -2.77475 0.900390688589 0.867156112649 0.477942373433 0.383965489175 1.0 0.390053719681 0.383333333333 0.0 0.0 NC_045512.2:456-530 + 456 530 25 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;455;75;0&p=30&e=30&w=0&f=456-530", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:456-530&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.539092 1.0 2.01333333333 -8.2147807947 -9.62676 -6.912332 NA 0.27465733355 0.612954582452 NA 0.706439850236 0.0174377340062 0.48 0.696594427245 0.346666666667 NC_045512.2:9222-9326 + 9222 9326 35 NotMaximal ACG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9221;105;0&p=30&e=30&w=0&f=9222-9326", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9222-9326&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.5425542857 1.0 1.40952380952 -11.7362716216 -11.1820028571 -5.36055142856 NA 0.094488035162 0.964483151555 NA 1.0 0.094488035162 0.4 0.267857142857 0.0 NC_045512.2:5811-5894 + 5811 5894 28 Maximal ACG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5810;84;0&p=30&e=30&w=0&f=5811-5894", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5811-5894&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.543925 1.0 1.39285714286 -11.8776897436 -13.1880035714 -3.35592142857 NA 0.368347712844 0.085388246785 NA 1.0 0.085388246785 0.369047619048 0.736842105263 0.0 NC_045512.2:16205-16276 + 16205 16276 24 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16204;72;0&p=30&e=30&w=0&f=16205-16276", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16205-16276&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.5560708333 1.0 1.05555555556 -15.6846986842 -11.7967333333 -4.75933749997 NA 0.0174377340062 0.0894774540127 NA 1.0 0.0174377340062 0.458333333333 0.264705882353 0.0 NC_045512.2:21095-21139 + 21095 21139 15 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21094;45;0&p=30&e=30&w=0&f=21095-21139", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21095-21139&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.56116 1.0 1.4 -11.8294 -17.5007733333 0.939613333333 NA 0.658831189972 0.697128438874 NA 1.0 0.355959628846 0.333333333333 0.0 0.0 NC_045512.2:10941-10979 + 10941 10979 13 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10940;39;0&p=30&e=30&w=0&f=10941-10979", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10941-10979&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.5651153846 1.0 1.02564102564 -16.1509875 -16.5642 -0.000915384599999 NA 0.094488035162 0.595021976233 NA 0.978368875142 0.094488035162 0.410256410256 0.0 0.0 NC_045512.2:29122-29160 + 29122 29160 13 NotMaximal AGG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29121;39;0&p=30&e=30&w=0&f=29122-29160", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29122-29160&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.5676153846 1.0 1.23076923077 -13.4611875 -12.6751615385 -3.89245384614 NA 1.0 0.887605404525 NA 0.907143089696 0.882637147973 0.435897435897 0.0 0.0 NC_045512.2:12057-12095 + 12057 12095 13 Maximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12056;39;0&p=30&e=30&w=0&f=12057-12095", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12057-12095&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.5886307692 1.0 1.25641025641 -13.2031959183 -9.74989230769 -6.83873846151 NA 0.276405664985 1.0 NA 0.561999023279 0.0174377340062 0.461538461538 0.0 0.0 NC_045512.2:11154-11192 - 11154 11192 13 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;11153;39;0&s=-&p=30&e=30&w=0&f=11154-11192-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:11154-11192&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -16.5944538462 1.0 1.0 -16.5944538462 -18.1354923077 1.54103846149 NA 1.0 1.0 NA 1.0 1.0 0.307692307692 0.0 0.0 NC_045512.2:10353-10394 - 10353 10394 14 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10352;42;0&s=-&p=30&e=30&w=0&f=10353-10394-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10353-10394&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -16.5960285714 1.0 1.0 -16.5960285714 -14.5076071429 -2.08842142854 NA 0.568217483314 1.0 NA 0.858053068533 0.458622822725 0.380952380952 0.65625 0.0 NC_045512.2:6207-6347 + 6207 6347 47 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6206;141;0&p=30&e=30&w=0&f=6207-6347", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6207-6347&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.5972340426 0.9813 1.27924220684 -12.9742701998 -12.0611212766 -4.536112766 NA 0.363337131695 0.637655868468 NA 0.981299039557 0.363337131695 0.347517730496 0.705 0.170212765957 NC_045512.2:4035-4100 + 4035 4100 22 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4034;66;0&p=30&e=30&w=0&f=4035-4100", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4035-4100&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.5984636364 0.996 1.96476517599 -8.44806485745 -9.14897727273 -7.44948636367 NA 0.424678495849 0.725866840306 NA 0.881266482175 0.094488035162 0.378787878788 0.0 0.0 NC_045512.2:4056-4100 + 4056 4100 15 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4055;45;0&p=30&e=30&w=0&f=4056-4100", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4056-4100&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.6007266667 0.9941 2.17054448034 -7.64818542863 -9.00506666667 -7.59566000003 NA 0.424678495849 0.725866840306 NA 0.452648543057 0.0174377340062 0.4 0.0 0.0 NC_045512.2:17030-17119 + 17030 17119 30 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17029;90;0&p=30&e=30&w=0&f=17030-17119", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17030-17119&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.61802 1.0 1.11111111111 -14.956218 -10.64657 -5.97145 1.0 0.0174377340062 0.884951977861 0.0174377340062 1.0 0.0174377340062 0.411111111111 0.0 0.122222222222 NC_045512.2:15942-15974 + 15942 15974 11 Maximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15941;33;0&p=30&e=30&w=0&f=15942-15974", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15942-15974&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.6180545455 1.0 1.12121212121 -14.8215081081 -16.4654727273 -0.152581818227 NA 0.997883770145 0.564636171252 NA 0.854494546638 0.543376200553 0.484848484848 0.55 0.0 NC_045512.2:5814-5894 + 5814 5894 27 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5813;81;0&p=30&e=30&w=0&f=5814-5894", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5814-5894&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.642862963 1.0 1.38271604938 -12.03635625 -13.407862963 -3.23500000004 NA 0.368347712844 0.085388246785 NA 0.472931792284 0.0803776656357 0.358024691358 0.409090909091 0.0 NC_045512.2:6261-6320 - 6261 6320 20 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6260;60;0&s=-&p=30&e=30&w=0&f=6261-6320-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6261-6320&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -16.64586 0.9813 1.27382168902 -13.0676531445 -11.861465 -4.784395 NA 0.544844538499 0.444590590916 NA 0.660299527918 0.216890769982 0.4 0.839160839161 0.0 NC_045512.2:19549-19620 - 19549 19620 24 Maximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19548;72;0&s=-&p=30&e=30&w=0&f=19549-19620-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19549-19620&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -16.6504583333 1.0 1.69444444444 -9.82649999998 -26.2494625 9.5990041667 NA 0.452876444734 0.284401758099 NA 1.0 0.0174377340062 0.375 0.0 0.0 NC_045512.2:5355-5408 + 5355 5408 18 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5354;54;0&p=30&e=30&w=0&f=5355-5408", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5355-5408&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.6551166667 1.0 1.2037037037 -13.8365584616 -10.2915722222 -6.36354444448 0.472931792284 0.0894774540127 1.0 0.0894774540127 1.0 0.0894774540127 0.425925925926 0.0 0.0 NC_045512.2:26824-26856 - 26824 26856 11 Maximal AUG Canonical M =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26823;33;0&s=-&p=30&e=30&w=0&f=26824-26856-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26824-26856&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -16.6575636364 1.0 1.24242424242 -13.4073073171 -9.32435454545 -7.33320909095 0.666280319062 1.0 0.878118183298 0.65399316295 1.0 0.878118183298 0.545454545455 1.65 0.0 NC_045512.2:22760-22822 - 22760 22822 21 NotMaximal AUC NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22759;63;0&s=-&p=30&e=30&w=0&f=22760-22822-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22760-22822&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -16.6595761905 1.0 2.5873015873 -6.43897730062 -21.576452381 4.91687619045 NA 0.276959140485 0.815874979652 NA 0.647794237343 0.267859352108 0.412698412698 0.411764705882 0.0 NC_045512.2:2881-2925 + 2881 2925 15 Maximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2880;45;0&p=30&e=30&w=0&f=2881-2925", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:2881-2925&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.6636066667 1.0 1.46666666667 -11.36155 -22.3690333333 5.70542666663 NA 0.840146508221 0.874530359759 NA 1.0 0.602445059417 0.422222222222 0.0 0.0 NC_045512.2:15506-15664 + 15506 15664 53 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15505;159;0&p=30&e=30&w=0&f=15506-15664", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15506-15664&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.6646867925 1.0 1.10691823899 -15.0550295455 -10.9910811321 -5.67360566042 0.965609636985 0.434351294156 0.343053882468 0.343053882468 1.0 0.343053882468 0.352201257862 0.609195402299 0.0 NC_045512.2:24728-24769 - 24728 24769 14 NotMaximal AGG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24727;42;0&s=-&p=30&e=30&w=0&f=24728-24769-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24728-24769&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -16.6733142857 1.0 1.80952380952 -9.21419999999 -26.7156214286 10.0423071429 NA 0.25216343806 0.443317597265 NA 0.450089532802 0.0174377340062 0.47619047619 0.0 0.0 NC_045512.2:17771-17803 - 17771 17803 11 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17770;33;0&s=-&p=30&e=30&w=0&f=17771-17803-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17771-17803&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -16.6749818182 1.0 1.15151515152 -14.4809052632 -13.2269181818 -3.44806363638 NA 1.0 1.0 NA 0.94439850236 0.94439850236 0.363636363636 0.0 0.0 NC_045512.2:999-1094 + 999 1094 32 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;998;96;0&p=30&e=30&w=0&f=999-1094", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:999-1094&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.68148125 1.0 1.25 -13.345185 -16.276334375 -0.405146875 NA 0.390053719681 1.0 NA 0.889829073742 0.383965489175 0.34375 0.0 0.0 NC_045512.2:24728-24835 - 24728 24835 36 Maximal ACG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24727;108;0&s=-&p=30&e=30&w=0&f=24728-24835-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24728-24835&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -16.6973444444 1.0 1.90740740741 -8.75394757279 -25.7889916667 9.09164722227 NA 0.25216343806 0.443317597265 NA 0.851779260947 0.0174377340062 0.453703703704 0.186206896552 0.305555555556 NC_045512.2:9517-9615 + 9517 9615 33 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9516;99;0&p=30&e=30&w=0&f=9517-9615", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9517-9615&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.7027121212 1.0 1.31313131313 -12.7197576923 -15.6323939394 -1.07031818181 NA 0.916877747029 0.738300504639 NA 0.289412339248 0.289412339248 0.313131313131 0.0 0.666666666667 NC_045512.2:5489-5599 - 5489 5599 37 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5488;111;0&s=-&p=30&e=30&w=0&f=5489-5599-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5489-5599&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -16.7057783784 1.0 1.77477477477 -9.41290050763 -22.7398756757 6.03409729728 NA 0.724479895816 0.43524987791 NA 0.840882305063 0.368347712844 0.414414414414 0.216374269006 0.0 NC_045512.2:10242-10397 + 10242 10397 52 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10241;156;0&p=30&e=30&w=0&f=10242-10397", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10242-10397&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.7099 1.0 1.12179487179 -14.8956822857 -10.5022711538 -6.20762884615 NA 0.921299039557 0.877717727495 NA 0.55328992349 0.473543871073 0.371794871795 0.185714285714 0.0 NC_045512.2:3126-3203 + 3126 3203 26 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3125;78;0&p=30&e=30&w=0&f=3126-3203", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3126-3203&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.7107346154 0.9556 2.45720847896 -6.80069874352 -16.6671961538 -0.0435384615538 NA 0.094488035162 0.854504313853 NA 0.696910304412 0.0 0.423076923077 0.0 0.0 NC_045512.2:12060-12095 + 12060 12095 12 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12059;36;0&p=30&e=30&w=0&f=12060-12095", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12060-12095&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.7115916667 1.0 1.25 -13.3692733334 -9.2639 -7.4476916667 NA 0.276405664985 1.0 NA 1.0 0.276405664985 0.444444444444 0.0 0.0 NC_045512.2:19967-20011 + 19967 20011 15 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19966;45;0&p=30&e=30&w=0&f=19967-20011", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19967-20011&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.7133733333 1.0 1.37777777778 -12.1306741935 -18.7167 2.0033266667 NA 0.623232948071 1.0 NA 0.0174377340062 0.0174377340062 0.444444444444 0.0 0.0 NC_045512.2:16409-16456 - 16409 16456 16 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16408;48;0&s=-&p=30&e=30&w=0&f=16409-16456-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16409-16456&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -16.72139375 1.0 1.25 -13.377115 -19.090075 2.36868125 NA 1.0 0.987712843887 NA 0.0174377340062 0.0174377340062 0.333333333333 0.0 0.0 NC_045512.2:9231-9326 + 9231 9326 32 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9230;96;0&p=30&e=30&w=0&f=9231-9326", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9231-9326&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.72624375 1.0 1.45833333333 -11.4694242857 -10.507225 -6.21901875 NA 0.094488035162 0.964483151555 NA 0.692160182321 0.0174377340062 0.385416666667 0.0 0.0 NC_045512.2:3105-3203 + 3105 3203 33 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3104;99;0&p=30&e=30&w=0&f=3105-3203", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3105-3203&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.7271848485 0.9633 2.31458634572 -7.22685713558 -16.1525636364 -0.574621212136 0.667410060231 0.094488035162 0.670538824678 0.085388246785 0.912111346248 0.085388246785 0.414141414141 0.0 0.0 NC_045512.2:3123-3203 + 3123 3203 27 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3122;81;0&p=30&e=30&w=0&f=3123-3203", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3123-3203&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.7278888889 0.9573 2.44027483159 -6.85492005752 -16.0007703704 -0.72711851853 0.774409897444 0.094488035162 0.854504313853 0.085388246785 1.0 0.085388246785 0.41975308642 0.0 0.0 NC_045512.2:15569-15703 - 15569 15703 45 Maximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15568;135;0&s=-&p=30&e=30&w=0&f=15569-15703-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15569-15703&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -16.7283888889 1.0 1.1037037037 -15.1565939597 -18.6713511111 1.94296222221 NA 0.452648543057 0.897183786424 NA 0.0174377340062 0.0174377340062 0.348148148148 0.981818181818 0.0 NC_045512.2:29325-29366 - 29325 29366 14 NotMaximal GUG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29324;42;0&s=-&p=30&e=30&w=0&f=29325-29366-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29325-29366&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -16.7349214286 1.0 0.952380952381 -17.5716675 -21.7636 5.0286785714 NA 1.0 0.884951977861 NA 1.0 0.884951977861 0.357142857143 0.84 0.0 NC_045512.2:24282-24326 + 24282 24326 15 Maximal AUG Canonical S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24281;45;0&p=30&e=30&w=0&f=24282-24326", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24282-24326&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.7380333333 1.0 1.06666666667 -15.69190625 -7.42752666667 -9.31050666663 0.994344782679 0.25216343806 0.848933745727 0.25216343806 1.0 0.25216343806 0.333333333333 0.0 0.777777777778 NC_045512.2:16603-16701 - 16603 16701 33 Maximal ACG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16602;99;0&s=-&p=30&e=30&w=0&f=16603-16701-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16603-16701&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -16.7476393939 1.0 1.06060606061 -15.7906314285 -16.0925787879 -0.655060606021 NA 0.0174377340062 0.0174377340062 NA 0.986114276412 0.0174377340062 0.414141414141 0.471428571429 0.181818181818 NC_045512.2:11022-11069 - 11022 11069 16 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;11021;48;0&s=-&p=30&e=30&w=0&f=11022-11069-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:11022-11069&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -16.7499875 1.0 1.3125 -12.7618952381 -14.2411 -2.5088875 NA 0.498420966954 0.890405339411 NA 0.993823864561 0.292749470943 0.333333333333 0.0 0.0 NC_045512.2:519-611 - 519 611 31 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;518;93;0&s=-&p=30&e=30&w=0&f=519-611-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:519-611&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -16.7578935484 1.0 1.76344086022 -9.50295182928 -17.9465483871 1.1886548387 NA 0.477942373433 0.970174181996 NA 0.981627869119 0.468842585056 0.52688172043 0.652631578947 0.290322580645 NC_045512.2:4287-4427 + 4287 4427 47 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4286;141;0&p=30&e=30&w=0&f=4287-4427", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4287-4427&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.7602680851 1.0 1.85815602837 -9.01983893129 -16.4128340426 -0.347434042547 NA 0.706439850236 0.259107927723 NA 0.890405339411 0.259107927723 0.36170212766 0.435185185185 0.0 NC_045512.2:16235-16276 + 16235 16276 14 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16234;42;0&p=30&e=30&w=0&f=16235-16276", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16235-16276&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.7613428571 1.0 1.04761904762 -15.9994636363 -11.6762857143 -5.08505714281 NA 0.0174377340062 0.0894774540127 NA 1.0 0.0174377340062 0.452380952381 0.0 0.0 NC_045512.2:519-617 - 519 617 33 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;518;99;0&s=-&p=30&e=30&w=0&f=519-617-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:519-617&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -16.7623121212 1.0 1.79797979798 -9.32285898876 -18.2227878788 1.46047575759 NA 0.477942373433 0.970174181996 NA 0.697340061859 0.085388246785 0.525252525253 0.61875 0.313131313131 NC_045512.2:17876-17917 - 17876 17917 14 Maximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17875;42;0&s=-&p=30&e=30&w=0&f=17876-17917-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17876-17917&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -16.7683214286 1.0 1.30952380952 -12.8049 -18.9443785714 2.17605714283 NA 0.912111346248 0.25216343806 NA 0.452648543057 0.0174377340062 0.380952380952 0.0 0.0 NC_045512.2:12741-12815 - 12741 12815 25 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12740;75;0&s=-&p=30&e=30&w=0&f=12741-12815-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12741-12815&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -16.784296 1.0 1.25333333333 -13.3917255319 -19.361752 2.577456 NA 0.832462965978 0.580322318086 NA 1.0 0.412785284063 0.44 0.275735294118 0.0 NC_045512.2:15512-15664 + 15512 15664 51 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15511;153;0&p=30&e=30&w=0&f=15512-15664", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15512-15664&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.7920941176 1.0 1.13071895425 -14.8508115607 -11.389327451 -5.40276666662 NA 0.434351294156 0.343053882468 NA 1.0 0.343053882468 0.352941176471 0.630494505495 0.0 NC_045512.2:18288-18329 + 18288 18329 14 NotMaximal ACG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18287;42;0&p=30&e=30&w=0&f=18288-18329", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18288-18329&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.8008714286 1.0 1.09523809524 -15.339926087 -16.6037642857 -0.197107142886 NA 0.957056812632 0.417720983233 NA 0.364759889305 0.0 0.547619047619 1.05 0.0 NC_045512.2:24255-24326 + 24255 24326 24 NotMaximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24254;72;0&p=30&e=30&w=0&f=24255-24326", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24255-24326&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.8046375 1.0 1.04166666667 -16.132452 -8.54685 -8.2577875 NA 0.25216343806 0.848933745727 NA 0.994807097509 0.246970535569 0.333333333333 0.0 0.666666666667 NC_045512.2:25910-25981 + 25910 25981 24 Maximal AUG Canonical ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25909;72;0&p=30&e=30&w=0&f=25910-25981", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25910-25981&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.8133583333 1.0 1.94444444444 -8.64686999998 -12.8135541667 -3.99980416663 0.694592218786 0.328748168647 0.7743805958 0.0174377340062 1.0 0.268438873515 0.402777777778 0.0 0.0 NC_045512.2:3087-3203 + 3087 3203 39 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3086;117;0&p=30&e=30&w=0&f=3087-3203", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3087-3203&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.8141230769 0.949 2.4227858995 -6.93999543268 -16.2649179487 -0.549205128182 NA 0.094488035162 0.846758912583 NA 0.31175647078 0.085388246785 0.410256410256 0.0 0.0 NC_045512.2:18308-18364 + 18308 18364 19 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18307;57;0&p=30&e=30&w=0&f=18308-18364", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18308-18364&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.8170894737 1.0 1.26315789474 -13.3135291667 -8.11901052632 -8.69807894738 0.795158717239 0.890405339411 0.267455640566 0.0174377340062 1.0 0.267455640566 0.456140350877 0.345454545455 0.0 NC_045512.2:3009-3047 - 3009 3047 13 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3008;39;0&s=-&p=30&e=30&w=0&f=3009-3047-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3009-3047&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -16.8185615385 0.9987 2.13485902836 -7.8780665679 -14.4588692308 -2.35969230773 NA 0.094488035162 0.865111509035 NA 0.535448477942 0.0174377340062 0.384615384615 0.0 0.0 NC_045512.2:1029-1094 + 1029 1094 22 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1028;66;0&p=30&e=30&w=0&f=1029-1094", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1029-1094&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.8191636364 1.0 1.18181818182 -14.2316 -16.0832045455 -0.735959090945 NA 0.390053719681 1.0 NA 0.58262412502 0.390053719681 0.318181818182 0.0 0.0 NC_045512.2:17051-17119 + 17051 17119 23 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17050;69;0&p=30&e=30&w=0&f=17051-17119", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17051-17119&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.8327869565 1.0 1.11594202899 -15.083925974 -10.8964521739 -5.93633478259 NA 0.0174377340062 0.912111346248 NA 0.431662054371 0.0174377340062 0.449275362319 0.0 0.0 NC_045512.2:25217-25333 - 25217 25333 39 Maximal AUC NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25216;117;0&s=-&p=30&e=30&w=0&f=25217-25333-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25217-25333&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -16.8347307692 1.0 1.87179487179 -8.99389726026 -26.6945128205 9.85978205131 NA 0.0174377340062 0.636389386293 NA 1.0 0.0174377340062 0.418803418803 0.0 0.641025641026 NC_045512.2:9541-9615 + 9541 9615 25 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9540;75;0&p=30&e=30&w=0&f=9541-9615", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9541-9615&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.838472 1.0 1.42666666667 -11.8026672897 -15.751932 -1.08654 NA 0.916877747029 0.738300504639 NA 1.0 0.611860654403 0.306666666667 0.0 0.653333333333 NC_045512.2:18563-18601 - 18563 18601 13 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18562;39;0&s=-&p=30&e=30&w=0&f=18563-18601-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18563-18601&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -16.842 1.0 1.58974358974 -10.5941612903 -12.2753692308 -4.56663076923 NA 0.0174377340062 0.890405339411 NA 0.672788539801 0.0174377340062 0.410256410256 0.609375 0.0 NC_045512.2:4284-4427 + 4284 4427 48 Maximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4283;144;0&p=30&e=30&w=0&f=4284-4427", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4284-4427&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.85255625 1.0 1.86111111111 -9.05510485075 -16.14576875 -0.7067875 NA 0.706439850236 0.259107927723 NA 1.0 0.259107927723 0.368055555556 0.413793103448 0.0 NC_045512.2:22760-22828 - 22760 22828 23 NotMaximal AUU NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22759;69;0&s=-&p=30&e=30&w=0&f=22760-22828-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22760-22828&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -16.8554217391 1.0 2.55072463768 -6.60809147726 -24.1891043478 7.33368260873 NA 0.276959140485 0.815874979652 NA 0.949656519616 0.276959140485 0.376811594203 0.450980392157 0.0 NC_045512.2:6273-6347 + 6273 6347 25 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6272;75;0&p=30&e=30&w=0&f=6273-6347", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6273-6347&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.856708 0.9813 1.25004368416 -13.484895139 -11.477144 -5.379564 NA 0.363337131695 0.637655868468 NA 0.287104020837 0.0894774540127 0.36 0.824175824176 0.133333333333 NC_045512.2:21086-21139 + 21086 21139 18 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21085;54;0&p=30&e=30&w=0&f=21086-21139", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21086-21139&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.8663666667 1.0 1.37037037037 -12.3078891892 -16.6476388889 -0.218727777811 0.878121439036 0.658831189972 0.697128438874 0.355959628846 1.0 0.355959628846 0.333333333333 0.0 0.0 NC_045512.2:16151-16276 + 16151 16276 42 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16150;126;0&p=30&e=30&w=0&f=16151-16276", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16151-16276&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.86695 1.0 1.03174603175 -16.3479669231 -10.7041642857 -6.16278571429 NA 0.0174377340062 0.0174377340062 NA 0.680266970536 0.0174377340062 0.412698412698 0.186666666667 0.0 NC_045512.2:16128-16163 + 16128 16163 12 Maximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16127;36;0&p=30&e=30&w=0&f=16128-16163", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16128-16163&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.875075 1.0 1.0 -16.875075 -18.0573 1.182225 NA 0.687204948722 1.0 NA 0.0174377340062 0.0174377340062 0.361111111111 0.0 0.0 NC_045512.2:19006-19092 - 19006 19092 29 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19005;87;0&s=-&p=30&e=30&w=0&f=19006-19092-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19006-19092&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -16.8914275862 1.0 1.4367816092 -11.7564336 -22.1421 5.2506724138 NA 0.225990558359 0.950157903305 NA 0.681318573987 0.0174377340062 0.402298850575 0.28431372549 0.0 NC_045512.2:18279-18329 + 18279 18329 17 Maximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18278;51;0&p=30&e=30&w=0&f=18279-18329", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18279-18329&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.8950352941 1.0 1.17647058824 -14.36078 -16.4581235294 -0.436911764688 NA 0.957056812632 0.417720983233 NA 0.0174377340062 0.0 0.509803921569 1.0 0.0 NC_045512.2:5697-5780 + 5697 5780 28 Maximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5696;84;0&p=30&e=30&w=0&f=5697-5780", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5697-5780&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.9078357143 1.0 1.53571428571 -11.0097534884 -11.6886964286 -5.21913928573 NA 0.68944489663 1.0 NA 0.806885886375 0.600306039394 0.380952380952 0.0 0.321428571429 NC_045512.2:20771-20833 - 20771 20833 21 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20770;63;0&s=-&p=30&e=30&w=0&f=20771-20833-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20771-20833&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -16.91 1.0 0.984126984127 -17.1827419355 -13.9359 -2.9741 0.453550382549 0.094488035162 0.0 0.0 0.672547615172 0.0 0.285714285714 0.7875 0.428571428571 NC_045512.2:24556-24600 + 24556 24600 15 Maximal AGG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24555;45;0&p=30&e=30&w=0&f=24556-24600", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24556-24600&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.9184466667 1.0 1.35555555556 -12.4808213115 -22.41372 5.4952733333 NA 0.240481849259 0.865111509035 NA 0.834803841771 0.240481849259 0.355555555556 0.0 0.711111111111 NC_045512.2:16493-16525 - 16493 16525 11 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16492;33;0&s=-&p=30&e=30&w=0&f=16493-16525-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16493-16525&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -16.9580727273 1.0 0.878787878788 -19.2971172414 -15.5355 -1.4225727273 0.706439850236 1.0 1.0 0.706439850236 1.0 1.0 0.212121212121 0.0 0.515151515152 NC_045512.2:18290-18364 + 18290 18364 25 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18289;75;0&p=30&e=30&w=0&f=18290-18364", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18290-18364&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.960896 1.0 1.21333333333 -13.9787604396 -9.8005 -7.160396 NA 0.890405339411 0.267455640566 NA 0.976900537197 0.267455640566 0.48 0.487012987013 0.0 NC_045512.2:28780-28839 + 28780 28839 20 NotMaximal AGG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28779;60;0&p=30&e=30&w=0&f=28780-28839", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28780-28839&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.966315 1.0 1.13333333333 -14.9702779412 -10.77892 -6.187395 NA 1.0 0.855441966466 NA 0.976666124044 0.83210809051 0.583333333333 0.78431372549 0.0 NC_045512.2:888-1094 + 888 1094 69 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;887;207;0&p=30&e=30&w=0&f=888-1094", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:888-1094&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.969584058 1.0 1.43961352657 -11.7875969799 -15.7835304348 -1.18605362322 NA 0.390053719681 0.886501709263 NA 0.368347712844 0.094488035162 0.400966183575 0.484210526316 0.0 NC_045512.2:8973-9026 - 8973 9026 18 Maximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8972;54;0&s=-&p=30&e=30&w=0&f=8973-9026-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8973-9026&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -16.9731944444 1.0 1.35185185185 -12.5555136986 -19.9562722222 2.98307777782 NA 0.70207064952 0.569474198274 NA 0.729747680287 0.338508871887 0.407407407407 0.0 0.0 NC_045512.2:29325-29369 - 29325 29369 15 NotMaximal UUG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29324;45;0&s=-&p=30&e=30&w=0&f=29325-29369-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29325-29369&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -16.98036 1.0 0.911111111111 -18.6369804878 -20.1232133333 3.14285333333 NA 1.0 0.679280481849 NA 0.706439850236 0.679280481849 0.355555555556 0.818181818182 0.0 NC_045512.2:12960-13040 - 12960 13040 27 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12959;81;0&s=-&p=30&e=30&w=0&f=12960-13040-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12960-13040&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -16.9878259259 1.0 1.04938271605 -16.1883988235 -16.9787481481 -0.00907777775185 NA 0.890405339411 0.355660100928 NA 0.594168972815 0.0 0.407407407407 0.304511278195 0.592592592593 NC_045512.2:5922-6086 + 5922 6086 55 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5921;165;0&p=30&e=30&w=0&f=5922-6086", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5922-6086&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.9884 0.9877 1.38917667742 -12.2291140329 -12.8080727273 -4.18032727273 NA 0.697821911118 0.094488035162 NA 0.390053719681 0.094488035162 0.315151515152 0.488888888889 0.139393939394 NC_045512.2:6264-6347 + 6264 6347 28 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6263;84;0&p=30&e=30&w=0&f=6264-6347", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6264-6347&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.9905678571 0.9813 1.27382168902 -13.3382623358 -13.8448142857 -3.14575357139 NA 0.363337131695 0.637655868468 NA 0.094488035162 0.0894774540127 0.380952380952 0.988235294118 0.119047619048 NC_045512.2:28581-28610 + 28581 28610 10 NotMaximal AUC NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28580;30;0&p=30&e=30&w=0&f=28581-28610", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28581-28610&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.99062 1.0 0.966666666667 -17.5765034483 -10.85286 -6.13776 NA 0.993911769494 0.890405339411 NA 0.0174377340062 0.0174377340062 0.4 0.0 0.0 NC_045512.2:12960-13037 - 12960 13037 26 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12959;78;0&s=-&p=30&e=30&w=0&f=12960-13037-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12960-13037&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -16.9907384615 1.0 1.03846153846 -16.3614518518 -16.6616884615 -0.329049999962 NA 0.890405339411 0.355660100928 NA 0.267455640566 0.0 0.397435897436 0.333333333333 0.615384615385 NC_045512.2:16148-16276 + 16148 16276 43 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16147;129;0&p=30&e=30&w=0&f=16148-16276", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16148-16276&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -16.9968906977 1.0 1.03100775194 -16.4857060151 -11.0597511628 -5.93713953491 NA 0.0174377340062 0.0174377340062 NA 0.812967605405 0.0174377340062 0.403100775194 0.191111111111 0.0 NC_045512.2:15554-15664 + 15554 15664 37 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15553;111;0&p=30&e=30&w=0&f=15554-15664", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15554-15664&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.0008189189 1.0 1.18018018018 -14.4052740458 -11.0699432432 -5.93087567566 0.958499104672 0.434351294156 0.674426176135 0.343053882468 1.0 0.343053882468 0.351351351351 0.584210526316 0.0 NC_045512.2:10705-10734 + 10705 10734 10 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10704;30;0&p=30&e=30&w=0&f=10705-10734", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10705-10734&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.00926 1.0 1.4 -12.1494714286 -27.90327 10.89401 NA 0.0174377340062 0.0174377340062 NA 1.0 0.0174377340062 0.4 0.9375 0.0 NC_045512.2:7716-7751 + 7716 7751 12 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7715;36;0&p=30&e=30&w=0&f=7716-7751", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7716-7751&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.0112416667 1.0 1.33333333333 -12.75843125 -6.08959166667 -10.92165 NA 0.907624938955 0.890405339411 NA 0.75898420967 0.546879374898 0.416666666667 0.642857142857 0.0 NC_045512.2:15515-15664 + 15515 15664 50 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15514;150;0&p=30&e=30&w=0&f=15515-15664", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15515-15664&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.019306 1.0 1.15333333333 -14.7566236994 -11.490864 -5.528442 NA 0.434351294156 0.343053882468 NA 1.0 0.343053882468 0.36 0.618131868132 0.0 NC_045512.2:20554-20592 - 20554 20592 13 Maximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20553;39;0&s=-&p=30&e=30&w=0&f=20554-20592-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20554-20592&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -17.0208538462 1.0 1.64102564103 -10.3720828125 -24.5377538462 7.51689999995 NA 0.378082370177 0.0174377340062 NA 0.712235064301 0.0174377340062 0.333333333333 0.0 0.0 NC_045512.2:3111-3203 + 3111 3203 31 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3110;93;0&p=30&e=30&w=0&f=3111-3203", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3111-3203&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.0326677419 0.9628 2.34045442321 -7.27750456193 -15.8499096774 -1.18275806448 0.728933745727 0.094488035162 0.854504313853 0.085388246785 1.0 0.085388246785 0.41935483871 0.0 0.0 NC_045512.2:2871-2903 + 2871 2903 11 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2870;33;0&p=30&e=30&w=0&f=2871-2903", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:2871-2903&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.0365 1.0 1.66666666667 -10.2219 -16.3428 -0.6937 0.249363503174 1.0 0.693872700635 0.240263714797 1.0 0.693872700635 0.515151515152 0.5 0.0 NC_045512.2:6252-6347 + 6252 6347 32 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6251;96;0&p=30&e=30&w=0&f=6252-6347", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6252-6347&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.037184375 0.9813 1.26320650828 -13.487251897 -13.702228125 -3.33495625 0.094488035162 0.363337131695 0.637655868468 0.0894774540127 0.513856421944 0.0894774540127 0.364583333333 0.947368421053 0.104166666667 NC_045512.2:22760-22825 - 22760 22825 22 NotMaximal AUA NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22759;66;0&s=-&p=30&e=30&w=0&f=22760-22825-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22760-22825&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -17.0386272727 1.0 2.60606060606 -6.53807790697 -22.5664227273 5.52779545457 NA 0.276959140485 0.815874979652 NA 0.680514406642 0.267859352108 0.393939393939 0.43137254902 0.0 NC_045512.2:18881-18931 + 18881 18931 17 Maximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18880;51;0&p=30&e=30&w=0&f=18881-18931", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18881-18931&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.0391176471 1.0 1.19607843137 -14.2458196722 -7.49740588235 -9.54171176475 NA 0.0174377340062 0.706439850236 NA 0.219560475338 0.0174377340062 0.43137254902 0.85 0.529411764706 NC_045512.2:19268-19315 - 19268 19315 16 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19267;48;0&s=-&p=30&e=30&w=0&f=19268-19315-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19268-19315&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -17.05055625 1.0 1.39583333333 -12.2153238806 -22.5996 5.54904375 0.97661728797 0.364759889305 0.768324922676 0.0174377340062 1.0 0.0174377340062 0.395833333333 0.0 0.0 NC_045512.2:18887-18931 + 18887 18931 15 NotMaximal ACG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18886;45;0&p=30&e=30&w=0&f=18887-18931", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18887-18931&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.0554133333 1.0 1.06666666667 -15.98945 -8.24772666667 -8.80768666663 NA 0.0174377340062 0.706439850236 NA 1.0 0.0174377340062 0.4 1.16883116883 0.511111111111 NC_045512.2:15548-15664 + 15548 15664 39 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15547;117;0&p=30&e=30&w=0&f=15548-15664", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15548-15664&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.0600333333 1.0 1.19658119658 -14.2573135714 -11.0386230769 -6.02141025638 0.975884746866 0.434351294156 0.343053882468 0.343053882468 1.0 0.343053882468 0.34188034188 0.586466165414 0.0 NC_045512.2:14411-14440 - 14411 14440 10 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14410;30;0&s=-&p=30&e=30&w=0&f=14411-14440-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14411-14440&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -17.06094 1.0 1.0 -17.06094 -13.43684 -3.6241 NA 0.891134624776 0.884317108904 NA 0.701246947745 0.674181995768 0.333333333333 0.0 0.0 NC_045512.2:22760-22831 - 22760 22831 24 Maximal AUA NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22759;72;0&s=-&p=30&e=30&w=0&f=22760-22831-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22760-22831&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -17.0651166667 1.0 2.56944444444 -6.64155891893 -24.4598291667 7.39471249997 NA 0.276959140485 0.815874979652 NA 0.776526127299 0.256711704379 0.361111111111 0.470588235294 0.0 NC_045512.2:6261-6347 + 6261 6347 29 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6260;87;0&p=30&e=30&w=0&f=6261-6347", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6261-6347&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.0668241379 0.9813 1.27675001474 -13.3673968599 -13.9515793103 -3.11524482756 NA 0.363337131695 0.637655868468 NA 0.0 0.0 0.367816091954 1.02352941176 0.114942528736 NC_045512.2:4317-4427 + 4317 4427 37 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4316;111;0&p=30&e=30&w=0&f=4317-4427", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4317-4427&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.0852054054 1.0 1.99099099099 -8.58125701357 -15.8942513514 -1.19095405405 NA 0.706439850236 0.259107927723 NA 0.68944489663 0.226869607684 0.369369369369 0.528571428571 0.0 NC_045512.2:16169-16276 + 16169 16276 36 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16168;108;0&p=30&e=30&w=0&f=16169-16276", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16169-16276&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.0854416667 1.0 1.08333333333 -15.7711769231 -11.1153333333 -5.97010833337 NA 0.0174377340062 0.0894774540127 NA 0.874335015465 0.0174377340062 0.425925925926 0.204545454545 0.0 NC_045512.2:3669-3749 + 3669 3749 27 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3668;81;0&p=30&e=30&w=0&f=3669-3749", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3669-3749&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.0860111111 1.0 2.02469135802 -8.43882256097 -14.7020888889 -2.38392222221 0.998831189972 0.7689825818 0.912111346248 0.679925118021 1.0 0.681093928048 0.345679012346 0.421875 0.0 NC_045512.2:24728-24832 - 24728 24832 35 NotMaximal AGG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24727;105;0&s=-&p=30&e=30&w=0&f=24728-24832-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24728-24832&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -17.0969285714 1.0 1.92380952381 -8.88701732672 -25.4902971429 8.39336857146 NA 0.25216343806 0.443317597265 NA 0.869073742471 0.0 0.447619047619 0.0 0.285714285714 NC_045512.2:14525-14605 + 14525 14605 27 Maximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14524;81;0&p=30&e=30&w=0&f=14525-14605", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14525-14605&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.1112592593 1.0 1.23456790123 -13.86012 -13.9927259259 -3.11853333337 NA 0.912111346248 0.0174377340062 NA 0.895116392642 0.0174377340062 0.407407407407 0.297794117647 0.0987654320988 NC_045512.2:17630-17713 + 17630 17713 28 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17629;84;0&p=30&e=30&w=0&f=17630-17713", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17630-17713&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.1180785714 1.0 1.14285714286 -14.97831875 -13.2376892857 -3.88038928569 NA 0.706439850236 0.463805958001 NA 1.0 0.463805958001 0.345238095238 0.4 0.0 NC_045512.2:1461-1556 + 1461 1556 32 Maximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1460;96;0&p=30&e=30&w=0&f=1461-1556", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1461-1556&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.11846875 1.0 1.34375 -12.7393255814 -8.779428125 -8.339040625 NA 0.524489663031 0.986729610939 NA 0.995630799284 0.524489663031 0.5 0.514285714286 0.239583333333 NC_045512.2:7410-7484 - 7410 7484 25 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7409;75;0&s=-&p=30&e=30&w=0&f=7410-7484-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7410-7484&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -17.126556 1.0 1.46666666667 -11.6771972727 -12.796204 -4.330352 0.557454012697 1.0 0.094488035162 0.094488035162 0.890405339411 0.094488035162 0.306666666667 0.625 0.0 NC_045512.2:5094-5213 + 5094 5213 40 Maximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5093;120;0&p=30&e=30&w=0&f=5094-5213", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5094-5213&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.1342475 1.0 1.33333333333 -12.850685625 -15.67651 -1.4577375 NA 1.0 0.451150903467 NA 0.994989418851 0.446140322318 0.366666666667 0.247933884298 0.0 NC_045512.2:18563-18595 - 18563 18595 11 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18562;33;0&s=-&p=30&e=30&w=0&f=18563-18595-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18563-18595&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -17.1451181818 1.0 1.63636363636 -10.4775722222 -17.9250818182 0.779963636382 NA 0.0174377340062 0.890405339411 NA 0.276405664985 0.0174377340062 0.333333333333 1.1 0.0 NC_045512.2:3663-3749 + 3663 3749 29 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3662;87;0&p=30&e=30&w=0&f=3663-3749", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3663-3749&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.1480068966 1.0 2.01149425287 -8.52500914288 -14.2852827586 -2.86272413798 NA 0.7689825818 0.912111346248 NA 0.559856747517 0.524489663031 0.35632183908 0.365546218487 0.0 NC_045512.2:8787-8822 + 8787 8822 12 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8786;36;0&p=30&e=30&w=0&f=8787-8822", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8787-8822&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.17565 1.0 1.83333333333 -9.36853636364 -15.477625 -1.698025 NA 0.548302132509 0.996933094579 NA 0.885394758261 0.545235227088 0.416666666667 0.0 0.0 NC_045512.2:9015-9080 + 9015 9080 22 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9014;66;0&p=30&e=30&w=0&f=9015-9080", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9015-9080&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.1780090909 1.0 1.12121212121 -15.320927027 -12.4837772727 -4.69423181817 NA 0.529425362201 1.0 NA 0.981435780563 0.464593846655 0.333333333333 0.0 0.0 NC_045512.2:19310-19354 + 19310 19354 15 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19309;45;0&p=30&e=30&w=0&f=19310-19354", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19310-19354&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.1802733333 1.0 1.62222222222 -10.590579452 -17.0443066667 -0.135966666633 0.977317271691 0.975972651799 1.0 0.95328992349 1.0 0.975972651799 0.333333333333 0.0 0.0 NC_045512.2:13269-13298 + 13269 13298 10 Maximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13268;30;0&p=30&e=30&w=0&f=13269-13298", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13269-13298&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.18345 1.0 1.06666666667 -16.109484375 -8.88575 -8.2977 NA 0.890405339411 1.0 NA 0.765661728797 0.656067068208 0.333333333333 0.0 0.0 NC_045512.2:8457-8489 + 8457 8489 11 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8456;33;0&p=30&e=30&w=0&f=8457-8489", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8457-8489&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.1886454545 1.0 1.27272727273 -13.5053642857 -16.0071363636 -1.18150909086 NA 0.755041510663 1.0 NA 0.869956047534 0.520195344294 0.30303030303 0.0 0.0 NC_045512.2:3687-3749 + 3687 3749 21 NotMaximal ACG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3686;63;0&p=30&e=30&w=0&f=3687-3749", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3687-3749&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.190547619 1.0 2.09523809524 -8.20457954543 -13.0863285714 -4.10421904757 NA 0.7689825818 0.912111346248 NA 1.0 0.681093928048 0.380952380952 0.45 0.0 NC_045512.2:885-1094 + 885 1094 70 Maximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;884;210;0&p=30&e=30&w=0&f=885-1094", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:885-1094&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.1944585714 1.0 1.45238095238 -11.838807541 -15.4499785714 -1.74447999997 NA 0.390053719681 0.886501709263 NA 0.484685007325 0.094488035162 0.404761904762 0.47032474804 0.0 NC_045512.2:17042-17119 + 17042 17119 26 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17041;78;0&p=30&e=30&w=0&f=17042-17119", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17042-17119&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.2002346154 1.0 1.19230769231 -14.4260032258 -11.1003769231 -6.09985769232 NA 0.0174377340062 0.912111346248 NA 0.707777958652 0.0174377340062 0.435897435897 0.0 0.0 NC_045512.2:5097-5213 + 5097 5213 39 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5096;117;0&p=30&e=30&w=0&f=5097-5213", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5097-5213&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.2186410256 1.0 1.33333333333 -12.9139807692 -15.0225589744 -2.19608205124 NA 1.0 0.451150903467 NA 0.094488035162 0.094488035162 0.376068376068 0.24173553719 0.0 NC_045512.2:5925-6086 + 5925 6086 54 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5924;162;0&p=30&e=30&w=0&f=5925-6086", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5925-6086&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.2247981481 0.9875 1.40255649244 -12.2810013293 -13.0148277778 -4.20997037032 NA 0.697821911118 0.094488035162 NA 0.094488035162 0.094488035162 0.308641975309 0.521739130435 0.123456790123 NC_045512.2:9783-9812 - 9783 9812 10 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9782;30;0&s=-&p=30&e=30&w=0&f=9783-9812-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9783-9812&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -17.23288 1.0 1.26666666667 -13.6049052632 -19.37898 2.1461 NA 1.0 1.0 NA 1.0 1.0 0.5 0.535714285714 0.0 NC_045512.2:19006-19065 - 19006 19065 20 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19005;60;0&s=-&p=30&e=30&w=0&f=19006-19065-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19006-19065&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -17.23643 1.0 1.5 -11.4909533333 -23.92993 6.6935 NA 0.225990558359 0.950157903305 NA 0.673579684193 0.0174377340062 0.416666666667 0.4 0.0 NC_045512.2:5856-5888 - 5856 5888 11 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5855;33;0&s=-&p=30&e=30&w=0&f=5856-5888-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5856-5888&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -17.2483818182 1.0 1.18181818182 -14.5947846154 -14.9879818182 -2.26040000002 NA 0.390053719681 0.562239947908 NA 0.380953931304 0.380953931304 0.333333333333 1.1 0.0 NC_045512.2:19748-19777 + 19748 19777 10 Maximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19747;30;0&p=30&e=30&w=0&f=19748-19777", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19748-19777&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.25417 1.0 1.26666666667 -13.6217131579 -16.35874 -0.89543 NA 0.302598079114 0.956513104346 NA 0.920742308318 0.0174377340062 0.233333333333 0.0 0.0 NC_045512.2:15569-15682 - 15569 15682 38 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15568;114;0&s=-&p=30&e=30&w=0&f=15569-15682-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15569-15682&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -17.2654157895 1.0 1.13157894737 -15.2578093023 -19.5618921053 2.29647631576 0.454829887677 0.452648543057 1.0 0.0174377340062 1.0 0.452648543057 0.359649122807 0.826086956522 0.0 NC_045512.2:4835-4900 - 4835 4900 22 Maximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4834;66;0&s=-&p=30&e=30&w=0&f=4835-4900-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4835-4900&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -17.2675727273 1.0 2.06060606061 -8.3798514706 -23.7712045455 6.50363181815 NA 0.912111346248 0.80092462966 NA 1.0 0.616959140485 0.333333333333 0.0 0.0 NC_045512.2:24374-24406 - 24374 24406 11 NotMaximal AAG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24373;33;0&s=-&p=30&e=30&w=0&f=24374-24406-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24374-24406&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -17.2699818182 1.0 2.12121212121 -8.14156285715 -19.8129909091 2.54300909089 NA 0.653986651473 0.415520104184 NA 0.219124206414 0.0174377340062 0.424242424242 0.0 0.818181818182 NC_045512.2:17432-17470 + 17432 17470 13 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17431;39;0&p=30&e=30&w=0&f=17432-17470", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17432-17470&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.2774153846 1.0 1.51282051282 -11.4206644068 -10.4504384615 -6.82697692306 NA 0.783490151392 0.890405339411 NA 0.890405339411 0.57781865538 0.564102564103 0.742857142857 0.0 NC_045512.2:15533-15664 + 15533 15664 44 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15532;132;0&p=30&e=30&w=0&f=15533-15664", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15533-15664&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.2871659091 1.0 1.20454545455 -14.351609434 -11.3534727273 -5.93369318183 NA 0.434351294156 0.343053882468 NA 1.0 0.343053882468 0.371212121212 0.66 0.0 NC_045512.2:17609-17713 + 17609 17713 35 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17608;105;0&p=30&e=30&w=0&f=17609-17713", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17609-17713&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.2952685714 1.0 1.22857142857 -14.077544186 -14.0652371429 -3.23003142854 NA 0.706439850236 0.0 NA 0.823014813609 0.0 0.32380952381 0.364583333333 0.0 NC_045512.2:15569-15658 - 15569 15658 30 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15568;90;0&s=-&p=30&e=30&w=0&f=15569-15658-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15569-15658&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -17.3051 1.0 1.1 -15.7319090909 -19.7273233333 2.42222333333 NA 0.452648543057 1.0 NA 0.0174377340062 0.0174377340062 0.366666666667 0.666666666667 0.0 NC_045512.2:2225-2254 - 2225 2254 10 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2224;30;0&s=-&p=30&e=30&w=0&f=2225-2254-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:2225-2254&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -17.33618 1.0 2.1 -8.25532380952 -27.77323 10.43705 NA 0.0883998046557 1.0 NA 0.912111346248 0.0883998046557 0.466666666667 0.666666666667 0.0 NC_045512.2:17039-17119 + 17039 17119 27 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17038;81;0&p=30&e=30&w=0&f=17039-17119", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17039-17119&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.3404666667 1.0 1.18518518519 -14.63101875 -11.1623296296 -6.17813703707 NA 0.0174377340062 0.912111346248 NA 0.617649356992 0.0174377340062 0.41975308642 0.0 0.0246913580247 NC_045512.2:6261-6329 - 6261 6329 23 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6260;69;0&s=-&p=30&e=30&w=0&f=6261-6329-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6261-6329&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -17.3412434783 0.9813 1.31443629359 -13.1929128576 -13.1339695652 -4.20727391308 0.094488035162 0.544844538499 0.444590590916 0.085388246785 0.981299039557 0.242184600358 0.376811594203 0.821428571429 0.0 NC_045512.2:9084-9191 + 9084 9191 36 Maximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9083;108;0&p=30&e=30&w=0&f=9084-9191", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9084-9191&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.3452083333 1.0 1.2962962963 -13.3805892857 -15.8508916667 -1.49431666663 NA 0.673065277552 0.415223832004 NA 1.0 0.28767051929 0.416666666667 0.426877470356 0.0 NC_045512.2:6648-6677 + 6648 6677 10 Maximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6647;30;0&p=30&e=30&w=0&f=6648-6677", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6648-6677&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.35314 1.0 1.53333333333 -11.3172652174 -14.65688 -2.69626 NA 0.094488035162 0.923818980954 NA 1.0 0.094488035162 0.433333333333 0.0 0.0 NC_045512.2:17390-17470 + 17390 17470 27 Maximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17389;81;0&p=30&e=30&w=0&f=17390-17470", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17390-17470&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.3552444444 1.0 1.33333333333 -13.0164333333 -9.63054444444 -7.72469999996 NA 0.783490151392 0.890405339411 NA 0.869047696565 0.57781865538 0.493827160494 0.621483375959 0.0 NC_045512.2:19304-19354 + 19304 19354 17 Maximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19303;51;0&p=30&e=30&w=0&f=19304-19354", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19304-19354&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.3658882353 1.0 1.64705882353 -10.543575 -16.6127411765 -0.753147058829 NA 0.975972651799 1.0 NA 0.842396223344 0.842396223344 0.313725490196 0.0 0.0 NC_045512.2:10506-10649 - 10506 10649 48 Maximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10505;144;0&s=-&p=30&e=30&w=0&f=10506-10649-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10506-10649&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -17.3736541667 1.0 1.16666666667 -14.8917035715 -13.29053125 -4.0831229167 NA 1.0 0.876610776494 NA 0.844268272831 0.624802213902 0.416666666667 0.160177975528 0.0138888888889 NC_045512.2:1464-1556 + 1464 1556 31 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1463;93;0&p=30&e=30&w=0&f=1464-1556", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1464-1556&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.3746064516 1.0 1.36559139785 -12.7231370079 -9.10769677419 -8.26690967741 NA 0.524489663031 0.986729610939 NA 0.094488035162 0.094488035162 0.494623655914 0.536538461538 0.215053763441 NC_045512.2:7235-7288 - 7235 7288 18 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7234;54;0&s=-&p=30&e=30&w=0&f=7235-7288-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7235-7288&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -17.3821611111 1.0 1.48148148148 -11.73295875 -14.9270388889 -2.45512222221 NA 0.421523685496 0.094488035162 NA 0.514253622009 0.094488035162 0.333333333333 0.0 0.0 NC_045512.2:19268-19345 - 19268 19345 26 Maximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19267;78;0&s=-&p=30&e=30&w=0&f=19268-19345-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19268-19345&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -17.3893346154 1.0 1.33333333333 -13.0420009616 -19.3150846154 1.92574999998 NA 0.364759889305 0.768324922676 NA 1.0 0.0174377340062 0.397435897436 0.0 0.0 NC_045512.2:18647-18760 + 18647 18760 38 Maximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18646;114;0&p=30&e=30&w=0&f=18647-18760", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18647-18760&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.3916657895 1.0 1.24561403509 -13.9623232395 -11.7053973684 -5.68626842108 NA 0.99380758587 0.88521243692 NA 0.819065603126 0.607201692984 0.429824561404 0.767676767677 0.0 NC_045512.2:1515-1556 + 1515 1556 14 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1514;42;0&p=30&e=30&w=0&f=1515-1556", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1515-1556&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.3921428571 1.0 1.40476190476 -12.3808474576 -5.81767857143 -11.5744642857 NA 0.524489663031 1.0 NA 0.569539313039 0.258355852189 0.47619047619 0.84 0.0 NC_045512.2:2121-2180 + 2121 2180 20 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2120;60;0&p=30&e=30&w=0&f=2121-2180", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:2121-2180&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.393965 1.0 2.81666666667 -6.17537218935 -19.3691 1.975135 NA 0.498420966954 0.878993976884 NA 0.405131043464 0.094488035162 0.4 0.444444444444 0.0 NC_045512.2:5489-5593 - 5489 5593 35 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5488;105;0&s=-&p=30&e=30&w=0&f=5489-5593-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5489-5593&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -17.3950914286 1.0 1.74285714286 -9.98079016395 -23.9611971429 6.56610571426 NA 0.724479895816 0.43524987791 NA 0.890405339411 0.368347712844 0.419047619048 0.224358974359 0.0 NC_045512.2:14573-14605 + 14573 14605 11 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14572;33;0&p=30&e=30&w=0&f=14573-14605", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14573-14605&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.3985 1.0 1.48484848485 -11.7173571429 -13.3335545455 -4.06494545455 NA 0.912111346248 1.0 NA 0.5741592056 0.486270551848 0.454545454545 0.611111111111 0.0 NC_045512.2:17684-17713 + 17684 17713 10 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17683;30;0&p=30&e=30&w=0&f=17684-17713", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17684-17713&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.3998 1.0 0.966666666667 -17.9997931034 -10.44542 -6.95438 0.891662054371 0.706439850236 0.993911769494 0.679902327853 1.0 0.70035161973 0.366666666667 0.0 0.0 NC_045512.2:17276-17368 - 17276 17368 31 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17275;93;0&s=-&p=30&e=30&w=0&f=17276-17368-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17276-17368&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -17.4083096774 1.0 0.978494623656 -17.7909098901 -16.3548967742 -1.05341290321 NA 1.0 0.476711704379 NA 0.571268110044 0.229158391665 0.333333333333 0.397435897436 0.0 NC_045512.2:15914-15952 + 15914 15952 13 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15913;39;0&p=30&e=30&w=0&f=15914-15952", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15914-15952&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.4103538462 1.0 1.35897435897 -12.8113924529 -10.8746230769 -6.53573076928 NA 1.0 1.0 NA 0.850040696728 0.850040696728 0.410256410256 0.0 0.0 NC_045512.2:1143-1226 + 1143 1226 28 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1142;84;0&p=30&e=30&w=0&f=1143-1226", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1143-1226&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.4171464286 1.0 1.80952380952 -9.62526513159 -15.449875 -1.9672714286 NA 1.0 0.498420966954 NA 0.890405339411 0.292749470943 0.416666666667 0.552631578947 0.0238095238095 NC_045512.2:17627-17713 + 17627 17713 29 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17626;87;0&p=30&e=30&w=0&f=17627-17713", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17627-17713&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.4248965517 1.0 1.13793103448 -15.3127878788 -13.8494793103 -3.57541724136 NA 0.706439850236 0.463805958001 NA 0.542923652938 0.249363503174 0.333333333333 0.414285714286 0.0 NC_045512.2:7037-7075 - 7037 7075 13 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7036;39;0&s=-&p=30&e=30&w=0&f=7037-7075-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7037-7075&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -17.4309846154 1.0 1.92307692308 -9.06411200001 -24.0181076923 6.58712307691 NA 0.630349991861 0.924476640078 NA 0.767755168484 0.357154484779 0.461538461538 0.0 0.692307692308 NC_045512.2:27809-27850 + 27809 27850 14 NotMaximal AUU NearCognate ORF7b =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27808;42;0&p=30&e=30&w=0&f=27809-27850", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27809-27850&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.4352071429 1.0 1.0 -17.4352071429 -16.3923285714 -1.04287857147 NA 0.770034185252 1.0 NA 0.706439850236 0.56436268924 0.261904761905 0.0 0.238095238095 NC_045512.2:25026-25058 + 25026 25058 11 NotMaximal AUU NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25025;33;0&p=30&e=30&w=0&f=25026-25058", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25026-25058&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.4363545455 1.0 1.21212121212 -14.3849925 -19.179 1.7426454545 NA 0.0174377340062 0.881305551034 NA 0.468842585056 0.0 0.272727272727 0.0 0.909090909091 NC_045512.2:28381-28413 + 28381 28413 11 NotMaximal AUC NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28380;33;0&p=30&e=30&w=0&f=28381-28413", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28381-28413&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.4365181818 1.0 1.60606060606 -10.8567 -21.3990818182 3.96256363638 NA 0.706439850236 0.68114601986 NA 0.0 0.0 0.484848484848 1.2 0.0 NC_045512.2:3912-4100 + 3912 4100 63 Maximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3911;189;0&p=30&e=30&w=0&f=3912-4100", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3912-4100&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.441431746 0.9484 2.33153102718 -7.48067752163 -14.1261698413 -3.31526190473 NA 0.424678495849 0.0174377340062 NA 0.340371154159 0.0174377340062 0.343915343915 0.0 0.0 NC_045512.2:16286-16357 + 16286 16357 24 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16285;72;0&p=30&e=30&w=0&f=16286-16357", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16286-16357&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.444925 1.0 1.31944444444 -13.2214168421 -12.9967083333 -4.44821666667 NA 1.0 1.0 NA 0.764548266319 0.764548266319 0.361111111111 0.872727272727 0.0972222222222 NC_045512.2:24217-24273 + 24217 24273 19 NotMaximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24216;57;0&p=30&e=30&w=0&f=24217-24273", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24217-24273&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.4493631579 1.0 1.56140350877 -11.1754348315 -21.7388157895 4.28945263157 NA 0.893739215367 1.0 NA 0.706439850236 0.688067719355 0.421052631579 0.0 0.0877192982456 NC_045512.2:26671-26700 - 26671 26700 10 NotMaximal CUG NearCognate M =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26670;30;0&s=-&p=30&e=30&w=0&f=26671-26700-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26671-26700&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -17.47702 1.0 1.23333333333 -14.1705567568 -15.96781 -1.50921 NA 0.27465733355 0.890405339411 NA 0.87713495035 0.27465733355 0.433333333333 0.0 0.0 NC_045512.2:13032-13085 + 13032 13085 18 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13031;54;0&p=30&e=30&w=0&f=13032-13085", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13032-13085&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.4810222222 1.0 1.18518518519 -14.7496125 -15.388 -2.0930222222 0.945524987791 0.789656519616 1.0 0.774002930164 1.0 0.789656519616 0.407407407407 0.0 0.0 NC_045512.2:5489-5587 - 5489 5587 33 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5488;99;0&s=-&p=30&e=30&w=0&f=5489-5587-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5489-5587&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -17.4878181818 1.0 1.81818181818 -9.61829999999 -23.4676212121 5.97980303032 NA 0.724479895816 0.43524987791 NA 0.390053719681 0.094488035162 0.434343434343 0.223981900452 0.0 NC_045512.2:24026-24178 - 24026 24178 51 Maximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24025;153;0&s=-&p=30&e=30&w=0&f=24026-24178-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24026-24178&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -17.4914882353 1.0 2.03921568627 -8.57755673077 -24.3056509804 6.81416274509 NA 0.454432687612 0.0174377340062 NA 0.0174377340062 0.0174377340062 0.411764705882 0.154545454545 0.274509803922 NC_045512.2:837-878 + 837 878 14 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;836;42;0&p=30&e=30&w=0&f=837-878", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:837-878&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.5029071429 1.0 1.52380952381 -11.4862828125 -12.6825785714 -4.82032857147 NA 0.0894774540127 0.912111346248 NA 0.912111346248 0.0894774540127 0.52380952381 0.0 0.0 NC_045512.2:24509-24538 - 24509 24538 10 NotMaximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24508;30;0&s=-&p=30&e=30&w=0&f=24509-24538-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24509-24538&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -17.50462 1.0 2.1 -8.33553333333 -31.46887 13.96425 NA 0.590024418037 0.908357480059 NA 1.0 0.498381898095 0.466666666667 0.666666666667 0.0 NC_045512.2:1491-1556 + 1491 1556 22 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1490;66;0&p=30&e=30&w=0&f=1491-1556", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1491-1556&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.5054409091 1.0 1.30303030303 -13.4344081395 -7.70773636364 -9.79770454546 NA 0.524489663031 0.986729610939 NA 0.971453687124 0.524489663031 0.469696969697 0.554621848739 0.0 NC_045512.2:3690-3749 + 3690 3749 20 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3689;60;0&p=30&e=30&w=0&f=3690-3749", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3690-3749&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.51106 1.0 2.16666666667 -8.08202769231 -12.26652 -5.24454 NA 0.7689825818 0.912111346248 NA 0.655568940257 0.532313202019 0.366666666667 0.0 0.0 NC_045512.2:3302-3358 - 3302 3358 19 Maximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3301;57;0&s=-&p=30&e=30&w=0&f=3302-3358-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3302-3358&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -17.5148526316 0.8535 3.1781099039 -5.5110909192 -16.3364368421 -1.17841578949 NA 0.414628031906 0.397349829074 NA 0.78750447664 0.351180205112 0.350877192982 0.0 0.0 NC_045512.2:16283-16357 + 16283 16357 25 Maximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16282;75;0&p=30&e=30&w=0&f=16283-16357", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16283-16357&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.523956 1.0 1.32 -13.2757242424 -12.836008 -4.687948 NA 1.0 1.0 NA 0.320787888654 0.320787888654 0.373333333333 0.769230769231 0.0933333333333 NC_045512.2:6261-6332 - 6261 6332 24 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6260;72;0&s=-&p=30&e=30&w=0&f=6261-6332-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6261-6332&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -17.5302291667 0.9813 1.27382168902 -13.7619176356 -12.9949833333 -4.53524583337 NA 0.544844538499 0.444590590916 NA 0.871704378968 0.242184600358 0.375 0.8 0.0 NC_045512.2:5839-5910 + 5839 5910 24 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5838;72;0&p=30&e=30&w=0&f=5839-5910", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5839-5910&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.5316291667 1.0 1.38888888889 -12.622773 -22.5553166667 5.02368749997 NA 0.77236529383 0.0 NA 0.557255412665 0.0 0.319444444444 0.6 0.0 NC_045512.2:19157-19300 + 19157 19300 48 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19156;144;0&p=30&e=30&w=0&f=19157-19300", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19157-19300&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.5346979167 1.0 1.36805555556 -12.8172411168 -12.2153375 -5.3193604167 NA 0.768324922676 0.364759889305 NA 0.897099137229 0.0174377340062 0.381944444444 0.195652173913 0.0 NC_045512.2:6958-7029 + 6958 7029 24 Maximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6957;72;0&p=30&e=30&w=0&f=6958-7029", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6958-7029&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.5415541667 1.0 1.76388888889 -9.94481811026 -21.5563375 4.0147833333 NA 0.764890118834 1.0 NA 1.0 0.764890118834 0.347222222222 0.461538461538 0.0 NC_045512.2:18395-18520 + 18395 18520 42 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18394;126;0&p=30&e=30&w=0&f=18395-18520", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18395-18520&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.5486928571 1.0 1.38095238095 -12.7076741379 -12.7200666667 -4.82862619043 NA 0.817349829074 0.699820934397 NA 0.935240110695 0.481631124858 0.388888888889 0.21724137931 0.0396825396825 NC_045512.2:10323-10397 + 10323 10397 25 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10322;75;0&p=30&e=30&w=0&f=10323-10397", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10323-10397&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.549768 1.0 1.14666666667 -15.3050302326 -12.342972 -5.206796 NA 0.921299039557 0.877717727495 NA 1.0 0.799016767052 0.4 0.334821428571 0.0 NC_045512.2:17033-17119 + 17033 17119 29 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17032;87;0&p=30&e=30&w=0&f=17033-17119", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17033-17119&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.5571655172 1.0 1.14942528736 -15.274734 -11.0353206897 -6.52184482754 NA 0.0174377340062 0.884951977861 NA 0.890405339411 0.0174377340062 0.413793103448 0.0 0.0919540229885 NC_045512.2:20656-20712 - 20656 20712 19 Maximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20655;57;0&s=-&p=30&e=30&w=0&f=20656-20712-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20656-20712&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -17.5587789474 1.0 1.9649122807 -8.93616428573 -26.2846105263 8.72583157892 NA 0.887605404525 0.88521243692 NA 1.0 0.676741006023 0.438596491228 0.730769230769 0.0 NC_045512.2:14555-14605 + 14555 14605 17 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14554;51;0&p=30&e=30&w=0&f=14555-14605", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14555-14605&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.5600235294 1.0 1.3137254902 -13.3665850746 -12.7530529412 -4.80697058822 NA 0.912111346248 0.0174377340062 NA 0.0174377340062 0.0174377340062 0.470588235294 0.356643356643 0.0 NC_045512.2:13023-13085 + 13023 13085 21 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13022;63;0&p=30&e=30&w=0&f=13023-13085", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13023-13085&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.5602809524 1.0 1.20634920635 -14.5565486842 -14.045952381 -3.51432857145 NA 0.789656519616 1.0 NA 1.0 0.789656519616 0.412698412698 0.0 0.0 NC_045512.2:7512-7706 + 7512 7706 65 Maximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7511;195;0&p=30&e=30&w=0&f=7512-7706", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7512-7706&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.5738184615 1.0 1.26666666667 -13.8740672064 -11.7096784615 -5.86413999996 NA 0.390053719681 0.094488035162 NA 0.920817190298 0.094488035162 0.353846153846 0.354545454545 0.0 NC_045512.2:16985-17119 + 16985 17119 45 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16984;135;0&p=30&e=30&w=0&f=16985-17119", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16985-17119&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.5754355556 1.0 1.07407407407 -16.3633365518 -12.4165777778 -5.15885777782 NA 0.0174377340062 0.679280481849 NA 0.847341689728 0.0174377340062 0.407407407407 0.0 0.2 NC_045512.2:9771-9818 + 9771 9818 16 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9770;48;0&p=30&e=30&w=0&f=9771-9818", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9771-9818&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.5806875 1.0 1.25 -14.06455 -19.7100375 2.12935 NA 0.477942373433 1.0 NA 0.094488035162 0.094488035162 0.416666666667 0.484848484848 0.0 NC_045512.2:27250-27285 - 27250 27285 12 NotMaximal AUU NearCognate ORF6 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27249;36;0&s=-&p=30&e=30&w=0&f=27250-27285-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27250-27285&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -17.5859833333 1.0 1.69444444444 -10.3786131147 -21.9261166667 4.34013333337 NA 0.094488035162 0.706439850236 NA 0.883076672636 0.085388246785 0.25 0.0 0.0 NC_045512.2:7257-7364 + 7257 7364 36 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7256;108;0&p=30&e=30&w=0&f=7257-7364", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7257-7364&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.5866583333 1.0 1.23148148148 -14.2808954887 -14.6486722222 -2.93798611108 NA 0.390053719681 0.094488035162 NA 0.833247598893 0.094488035162 0.314814814815 0.0 0.25 NC_045512.2:24026-24091 - 24026 24091 22 NotMaximal AUC NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24025;66;0&s=-&p=30&e=30&w=0&f=24026-24091-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24026-24091&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -17.5876772727 1.0 1.87878787879 -9.3611830645 -25.0964454545 7.50876818185 NA 0.454432687612 0.341842747843 NA 0.623128764447 0.0894774540127 0.409090909091 0.0 0.272727272727 NC_045512.2:28998-29081 + 28998 29081 28 NotMaximal AAG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28997;84;0&p=30&e=30&w=0&f=28998-29081", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28998-29081&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.5964285714 1.0 1.41666666667 -12.4210084033 -13.2846892857 -4.31173928569 NA 0.0174377340062 1.0 NA 0.689594660589 0.0 0.452380952381 0.470588235294 0.0 NC_045512.2:15635-15664 + 15635 15664 10 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15634;30;0&p=30&e=30&w=0&f=15635-15664", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15635-15664&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.60497 1.0 1.16666666667 -15.0899742857 -9.9209 -7.68407 NA 0.434351294156 0.944587335178 NA 0.981627869119 0.434351294156 0.333333333333 0.0 0.0 NC_045512.2:17087-17119 + 17087 17119 11 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17086;33;0&p=30&e=30&w=0&f=17087-17119", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17087-17119&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.6075272727 1.0 1.0303030303 -17.0896588235 -8.49267272727 -9.11485454543 NA 0.0174377340062 1.0 NA 0.54253296435 0.0174377340062 0.454545454545 0.0 0.0 NC_045512.2:10119-10157 + 10119 10157 13 Maximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10118;39;0&p=30&e=30&w=0&f=10119-10157", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10119-10157&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.6126692308 1.0 1.30769230769 -13.4685117647 -10.4297923077 -7.18287692311 NA 0.468611427641 0.569506755657 NA 1.0 0.468611427641 0.461538461538 0.975 0.0 NC_045512.2:10506-10628 - 10506 10628 41 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10505;123;0&s=-&p=30&e=30&w=0&f=10506-10628-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10506-10628&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -17.6161097561 1.0 1.16260162602 -15.1523181818 -13.1252219512 -4.49088780488 NA 1.0 0.876610776494 NA 1.0 0.876610776494 0.39837398374 0.0 0.0162601626016 NC_045512.2:4784-4822 - 4784 4822 13 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4783;39;0&s=-&p=30&e=30&w=0&f=4784-4822-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4784-4822&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -17.6168230769 1.0 1.92307692308 -9.16074799999 -27.7815230769 10.1647 NA 0.094488035162 0.348497476803 NA 1.0 0.094488035162 0.410256410256 0.0 0.0 NC_045512.2:27966-28007 - 27966 28007 14 NotMaximal AGG NearCognate ORF8 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27965;42;0&s=-&p=30&e=30&w=0&f=27966-28007-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27966-28007&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -17.6200357143 0.701 4.641095887 -3.79652481726 -12.2223571429 -5.39767857144 NA 0.094488035162 0.916102881328 NA 0.304405013837 0.0174377340062 0.428571428571 0.545454545455 0.0 NC_045512.2:5133-5177 - 5133 5177 15 Maximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5132;45;0&s=-&p=30&e=30&w=0&f=5133-5177-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5133-5177&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -17.6414866667 1.0 1.28888888889 -13.6873603449 -18.0570133333 0.415526666633 NA 0.968357480059 0.966882630636 NA 0.390053719681 0.390053719681 0.422222222222 0.5 0.0 NC_045512.2:25143-25190 + 25143 25190 16 Maximal AUG Canonical S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25142;48;0&p=30&e=30&w=0&f=25143-25190", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25143-25190&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.6468 1.0 1.25 -14.11744 -14.84634375 -2.80045625 0.994559661403 0.271762982256 0.706439850236 0.271762982256 1.0 0.271762982256 0.375 0.592592592593 0.604166666667 NC_045512.2:24674-24724 - 24674 24724 17 Maximal CUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24673;51;0&s=-&p=30&e=30&w=0&f=24674-24724-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24674-24724&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -17.6471588235 1.0 1.76470588235 -10.0000566666 -27.8135705882 10.1664117647 NA 0.619283737587 0.814090835097 NA 1.0 0.560853003419 0.392156862745 0.0 0.411764705882 NC_045512.2:17663-17713 + 17663 17713 17 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17662;51;0&p=30&e=30&w=0&f=17663-17713", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17663-17713&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.6499882353 1.0 1.05882352941 -16.6694333333 -9.86148823529 -7.78850000001 NA 0.706439850236 0.463805958001 NA 0.55500895328 0.278355852189 0.392156862745 0.51 0.0 NC_045512.2:24728-24826 - 24728 24826 33 NotMaximal GUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24727;99;0&s=-&p=30&e=30&w=0&f=24728-24826-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24728-24826&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -17.6514333333 1.0 1.91919191919 -9.19732578946 -24.963969697 7.31253636367 NA 0.25216343806 0.443317597265 NA 0.528302132509 0.0174377340062 0.454545454545 0.0 0.242424242424 NC_045512.2:18710-18760 + 18710 18760 17 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18709;51;0&p=30&e=30&w=0&f=18710-18760", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18710-18760&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.6518058824 1.0 1.07843137255 -16.3680381819 -9.34482941176 -8.30697647064 0.906023115741 0.99380758587 0.88521243692 0.688966303109 1.0 0.87902002279 0.352941176471 1.25925925926 0.0 NC_045512.2:519-575 - 519 575 19 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;518;57;0&s=-&p=30&e=30&w=0&f=519-575-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:519-575&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -17.6594894737 1.0 2.0 -8.82974473685 -22.1808578947 4.52136842104 NA 0.477942373433 0.988546312876 NA 0.614211297412 0.085388246785 0.526315789474 0.855 0.473684210526 NC_045512.2:10506-10634 - 10506 10634 43 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10505;129;0&s=-&p=30&e=30&w=0&f=10506-10634-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10506-10634&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -17.6600674419 1.0 1.16279069767 -15.187658 -12.6960209302 -4.96404651167 NA 1.0 0.876610776494 NA 0.343053882468 0.0174377340062 0.403100775194 0.0 0.015503875969 NC_045512.2:10452-10508 + 10452 10508 19 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10451;57;0&p=30&e=30&w=0&f=10452-10508", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10452-10508&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.6609157895 1.0 1.08771929825 -16.2366483871 -11.4930105263 -6.16790526318 NA 0.544356177763 0.935269412339 NA 0.551320201856 0.085388246785 0.333333333333 0.0 0.631578947368 NC_045512.2:1335-1397 + 1335 1397 21 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1334;63;0&p=30&e=30&w=0&f=1335-1397", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1335-1397&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.663652381 1.0 1.85714285714 -9.51119743592 -18.2440380952 0.580385714238 NA 0.59783818981 0.469790004884 NA 1.0 0.364759889305 0.365079365079 0.0 0.412698412698 NC_045512.2:5910-6086 + 5910 6086 59 Maximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5909;177;0&p=30&e=30&w=0&f=5910-6086", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5910-6086&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.6644457627 0.9885 1.43623814562 -12.2991063958 -12.8894508475 -4.77499491524 NA 0.697821911118 0.094488035162 NA 0.77236529383 0.0174377340062 0.310734463277 0.468253968254 0.152542372881 NC_045512.2:13197-13277 - 13197 13277 27 Maximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13196;81;0&s=-&p=30&e=30&w=0&f=13197-13277-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13197-13277&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -17.6718037037 1.0 0.950617283951 -18.5898194805 -11.6209481481 -6.05085555555 NA 0.364759889305 0.937336806121 NA 1.0 0.364759889305 0.481481481481 0.639473684211 0.333333333333 NC_045512.2:24026-24085 - 24026 24085 20 NotMaximal AAG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24025;60;0&s=-&p=30&e=30&w=0&f=24026-24085-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24026-24085&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -17.67937 1.0 1.86666666667 -9.47109107143 -24.965675 7.286305 NA 0.454432687612 0.341842747843 NA 0.0174377340062 0.0174377340062 0.4 0.0 0.2 NC_045512.2:6099-6152 + 6099 6152 18 Maximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6098;54;0&p=30&e=30&w=0&f=6099-6152", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6099-6152&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.6814833333 0.9813 1.4531002971 -12.1681093649 -16.1472833333 -1.53419999997 NA 0.981299039557 0.872905746378 NA 0.368347712844 0.0883998046557 0.37037037037 0.0 0.12962962963 NC_045512.2:468-530 + 468 530 21 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;467;63;0&p=30&e=30&w=0&f=468-530", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:468-530&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.6867047619 1.0 2.25396825397 -7.84691830986 -10.990847619 -6.69585714285 0.886111020674 0.27465733355 0.612954582452 0.0174377340062 0.912111346248 0.0174377340062 0.47619047619 0.85520361991 0.222222222222 NC_045512.2:25685-25723 + 25685 25723 13 NotMaximal CUG NearCognate ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25684;39;0&p=30&e=30&w=0&f=25685-25723", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25685-25723&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.7005846154 1.0 2.17948717949 -8.12144470589 -20.5239 2.8233153846 NA 0.981611590428 0.884317108904 NA 1.0 0.865928699333 0.461538461538 0.0 0.0 NC_045512.2:6647-6703 - 6647 6703 19 Maximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6646;57;0&s=-&p=30&e=30&w=0&f=6647-6703-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6647-6703&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -17.7074736842 1.0 1.82456140351 -9.7050576923 -20.6452578947 2.93778421054 NA 0.0174377340062 0.436128927234 NA 0.436128927234 0.0174377340062 0.385964912281 0.0 0.0 NC_045512.2:16323-16352 + 16323 16352 10 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16322;30;0&p=30&e=30&w=0&f=16323-16352", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16323-16352&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.71227 1.0 1.26666666667 -13.9833710526 -19.79605 2.08378 NA 0.968097021 0.0174377340062 NA 1.0 0.0174377340062 0.4 1.11111111111 0.0666666666667 NC_045512.2:7037-7141 - 7037 7141 35 Maximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7036;105;0&s=-&p=30&e=30&w=0&f=7037-7141-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7037-7141&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -17.7181285714 1.0 1.8380952381 -9.63939637304 -22.3616942857 4.64356571431 NA 0.630349991861 0.094488035162 NA 0.390053719681 0.094488035162 0.4 0.0 0.257142857143 NC_045512.2:16238-16276 + 16238 16276 13 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16237;39;0&p=30&e=30&w=0&f=16238-16276", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16238-16276&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.7210923077 1.0 1.07692307692 -16.4553 -12.7019692308 -5.01912307693 NA 0.0174377340062 0.0894774540127 NA 1.0 0.0174377340062 0.435897435897 0.0 0.0 NC_045512.2:1486-1515 + 1486 1515 10 Maximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1485;30;0&p=30&e=30&w=0&f=1486-1515", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1486-1515&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.72208 1.0 1.33333333333 -13.29156 -17.17963 -0.54245 NA 0.569539313039 1.0 NA 0.551636008465 0.447302620869 0.466666666667 0.0 0.0 NC_045512.2:8331-8372 + 8331 8372 14 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8330;42;0&p=30&e=30&w=0&f=8331-8372", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8331-8372&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.7251285714 1.0 1.2380952381 -14.31645 -9.26382142857 -8.46130714283 NA 0.675650333713 0.949887677031 NA 0.792160182321 0.423193879212 0.47619047619 1.38461538462 0.0 NC_045512.2:28146-28196 - 28146 28196 17 NotMaximal ACG NearCognate ORF8 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28145;51;0&s=-&p=30&e=30&w=0&f=28146-28196-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28146-28196&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -17.7373823529 0.7001 5.53402342522 -3.2051512959 -30.7644823529 13.0271 NA 0.0174377340062 0.770294644311 NA 0.467826794726 0.0174377340062 0.392156862745 0.515151515152 0.0 NC_045512.2:1072-1128 + 1072 1128 19 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1071;57;0&p=30&e=30&w=0&f=1072-1128", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1072-1128&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.7436315789 1.0 1.31578947368 -13.48516 -14.0694947368 -3.67413684206 0.986729610939 1.0 0.486781702751 0.486781702751 1.0 0.486781702751 0.315789473684 0.0 0.456140350877 NC_045512.2:24390-24437 + 24390 24437 16 NotMaximal GUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24389;48;0&p=30&e=30&w=0&f=24390-24437", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24390-24437&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.7488 1.0 1.54166666667 -11.5127351351 -9.68748125 -8.06131875 NA 0.854488035162 0.616242878073 NA 0.611144391991 0.527738889793 0.416666666667 0.0 0.604166666667 NC_045512.2:2280-2309 + 2280 2309 10 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2279;30;0&p=30&e=30&w=0&f=2280-2309", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:2280-2309&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.74909 1.0 2.23333333333 -7.94735373134 -10.28737 -7.46172 NA 0.094488035162 0.390053719681 NA 0.706439850236 0.094488035162 0.4 0.0 0.0 NC_045512.2:3098-3133 - 3098 3133 12 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3097;36;0&s=-&p=30&e=30&w=0&f=3098-3133-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3098-3133&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -17.7521916667 0.976 2.11214240491 -8.40482707293 -18.6976333333 0.945441666633 NA 0.085388246785 1.0 NA 0.511688100277 0.085388246785 0.333333333333 0.0 0.0 NC_045512.2:11646-11681 + 11646 11681 12 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;11645;36;0&p=30&e=30&w=0&f=11646-11681", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:11646-11681&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.7523416667 1.0 1.16666666667 -15.2162928572 -12.95165 -4.8006916667 NA 0.343053882468 1.0 NA 1.0 0.343053882468 0.416666666667 0.72 0.0 NC_045512.2:16409-16468 - 16409 16468 20 Maximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16408;60;0&s=-&p=30&e=30&w=0&f=16409-16468-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16409-16468&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -17.75392 1.0 1.35 -13.1510518519 -18.20709 0.45317 NA 1.0 0.987712843887 NA 0.54452873189 0.495552661566 0.35 0.0 0.0 NC_045512.2:15536-15664 + 15536 15664 43 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15535;129;0&p=30&e=30&w=0&f=15536-15664", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15536-15664&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.7540395349 1.0 1.22480620155 -14.4953867089 -11.4006302326 -6.35340930234 NA 0.434351294156 0.343053882468 NA 0.859137229367 0.343053882468 0.372093023256 0.671875 0.0 NC_045512.2:5489-5539 - 5489 5539 17 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5488;51;0&s=-&p=30&e=30&w=0&f=5489-5539-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5489-5539&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -17.7571823529 1.0 1.70588235294 -10.4093827586 -23.3267470588 5.56956470592 NA 0.724479895816 0.796679146997 NA 0.094488035162 0.094488035162 0.411764705882 0.520408163265 0.0 NC_045512.2:21080-21139 + 21080 21139 20 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21079;60;0&p=30&e=30&w=0&f=21080-21139", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21080-21139&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.75939 1.0 1.46666666667 -12.108675 -16.193465 -1.565925 NA 0.658831189972 0.697128438874 NA 0.971889956048 0.327517499593 0.316666666667 0.0 0.0 NC_045512.2:2265-2309 + 2265 2309 15 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2264;45;0&p=30&e=30&w=0&f=2265-2309", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:2265-2309&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.7650733333 1.0 2.44444444444 -7.26752999999 -11.3212 -6.4438733333 NA 0.094488035162 0.390053719681 NA 0.094488035162 0.094488035162 0.377777777778 0.0 0.0 NC_045512.2:6225-6347 + 6225 6347 41 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6224;123;0&p=30&e=30&w=0&f=6225-6347", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6225-6347&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.7700073171 0.9813 1.32560305849 -13.4052250433 -13.2398268293 -4.53018048783 NA 0.363337131695 0.637655868468 NA 0.916604265017 0.363337131695 0.349593495935 0.802173913043 0.0813008130081 NC_045512.2:5940-6086 + 5940 6086 49 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5939;147;0&p=30&e=30&w=0&f=5940-6086", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5940-6086&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.7707734694 0.9862 1.46404184881 -12.1381594958 -13.118922449 -4.65185102042 NA 0.697821911118 0.094488035162 NA 0.658831189972 0.094488035162 0.312925170068 0.565384615385 0.0340136054422 NC_045512.2:28795-28839 + 28795 28839 15 NotMaximal AGG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28794;45;0&p=30&e=30&w=0&f=28795-28839", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28795-28839&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.7752933333 1.0 1.35555555556 -13.1129213115 -9.1597 -8.6155933333 NA 1.0 0.855441966466 NA 0.769842096695 0.625284063161 0.6 0.741758241758 0.0 NC_045512.2:11736-11768 + 11736 11768 11 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;11735;33;0&p=30&e=30&w=0&f=11736-11768", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:11736-11768&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.7790636364 1.0 1.18181818182 -15.043823077 -15.7486090909 -2.03045454549 NA 0.0174377340062 1.0 NA 0.452648543057 0.0174377340062 0.484848484848 0.0 0.0 NC_045512.2:9696-9746 + 9696 9746 17 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9695;51;0&p=30&e=30&w=0&f=9696-9746", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9696-9746&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.7824411765 1.0 1.33333333333 -13.3368308824 -11.8822470588 -5.90019411768 NA 0.094488035162 0.477942373433 NA 1.0 0.094488035162 0.274509803922 0.0 0.0 NC_045512.2:9849-9887 + 9849 9887 13 Maximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9848;39;0&p=30&e=30&w=0&f=9849-9887", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9849-9887&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.7825846154 1.0 1.5641025641 -11.3691934426 -13.9902769231 -3.79230769232 NA 0.094488035162 0.990594172229 NA 0.959462803191 0.094488035162 0.333333333333 0.928571428571 0.0 NC_045512.2:17066-17119 + 17066 17119 18 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17065;54;0&p=30&e=30&w=0&f=17066-17119", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17066-17119&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.7826333333 1.0 1.11111111111 -16.00437 -11.9766444444 -5.80598888886 NA 0.0174377340062 1.0 NA 0.548653752238 0.0174377340062 0.481481481481 0.0 0.0 NC_045512.2:19160-19300 + 19160 19300 47 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19159;141;0&p=30&e=30&w=0&f=19160-19300", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19160-19300&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.7849744681 1.0 1.37588652482 -12.9261927835 -12.5058489362 -5.27912553193 NA 0.768324922676 0.364759889305 NA 1.0 0.0174377340062 0.390070921986 0.191576086957 0.0 NC_045512.2:6261-6338 - 6261 6338 26 NotMaximal ACG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6260;78;0&s=-&p=30&e=30&w=0&f=6261-6338-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6261-6338&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -17.7939615385 0.9813 1.31954862144 -13.4848850958 -13.06915 -4.7248115385 NA 0.544844538499 0.444590590916 NA 0.981299039557 0.242184600358 0.371794871795 1.125 0.0128205128205 NC_045512.2:15668-15703 + 15668 15703 12 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15667;36;0&p=30&e=30&w=0&f=15668-15703", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15668-15703&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.813125 1.0 1.08333333333 -16.4428846154 -12.0300166667 -5.78310833333 0.673039231646 1.0 1.0 0.673039231646 0.890405339411 0.890405339411 0.305555555556 2.4 0.0 NC_045512.2:7377-7466 + 7377 7466 30 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7376;90;0&p=30&e=30&w=0&f=7377-7466", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7377-7466&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.8201633333 1.0 1.22222222222 -14.5801336363 -12.3163333333 -5.50382999997 NA 0.094488035162 0.706439850236 NA 0.670978349341 0.094488035162 0.344444444444 0.384615384615 0.0 NC_045512.2:7998-8099 + 7998 8099 34 Maximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7997;102;0&p=30&e=30&w=0&f=7998-8099", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7998-8099&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.8225882353 1.0 1.42156862745 -12.5372689655 -16.28425 -1.5383382353 NA 0.292749470943 0.643773400619 NA 0.368347712844 0.085388246785 0.352941176471 1.275 0.0 NC_045512.2:17006-17119 + 17006 17119 38 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17005;114;0&p=30&e=30&w=0&f=17006-17119", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17006-17119&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.8255131579 1.0 1.11403508772 -16.0008543307 -11.5138552632 -6.31165789474 NA 0.0174377340062 0.884951977861 NA 0.514556405665 0.0174377340062 0.394736842105 0.0 0.236842105263 NC_045512.2:10958-11008 - 10958 11008 17 Maximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10957;51;0&s=-&p=30&e=30&w=0&f=10958-11008-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10958-11008&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -17.8388705882 1.0 1.43137254902 -12.4627726027 -20.2963235294 2.45745294121 NA 0.368347712844 1.0 NA 1.0 0.368347712844 0.43137254902 0.0 0.0 NC_045512.2:21098-21139 + 21098 21139 14 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21097;42;0&p=30&e=30&w=0&f=21098-21139", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21098-21139&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.84045 1.0 1.45238095238 -12.2835885246 -16.09345 -1.747 NA 0.658831189972 0.697128438874 NA 1.0 0.355959628846 0.333333333333 0.0 0.0 NC_045512.2:8934-8966 - 8934 8966 11 Maximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8933;33;0&s=-&p=30&e=30&w=0&f=8934-8966-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8934-8966&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -17.8416 1.0 1.21212121212 -14.71932 -15.7067636364 -2.13483636364 NA 1.0 0.892889467687 NA 0.571938792121 0.571938792121 0.424242424242 0.0 0.0 NC_045512.2:6985-7029 + 6985 7029 15 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6984;45;0&p=30&e=30&w=0&f=6985-7029", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6985-7029&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.8467066667 1.0 1.97777777778 -9.02361573035 -20.47324 2.6265333333 NA 0.764890118834 1.0 NA 0.985720332085 0.75061045092 0.377777777778 0.625 0.0 NC_045512.2:17399-17470 + 17399 17470 24 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17398;72;0&p=30&e=30&w=0&f=17399-17470", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17399-17470&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.8527083333 1.0 1.375 -12.9837878788 -10.3686375 -7.4840708333 1.0 0.783490151392 0.890405339411 0.57781865538 1.0 0.57781865538 0.5 0.701298701299 0.0 NC_045512.2:15945-15974 + 15945 15974 10 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15944;30;0&p=30&e=30&w=0&f=15945-15974", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15945-15974&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.8611 1.0 1.03333333333 -17.2849354839 -10.89936 -6.96174 NA 0.997883770145 0.564636171252 NA 0.597105648706 0.49926094742 0.5 0.6 0.0 NC_045512.2:25329-25445 + 25329 25445 39 NotMaximal UUG NearCognate S,ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25328;117;0&p=30&e=30&w=0&f=25329-25445", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25329-25445&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.8807153846 0.9908 1.57622646674 -11.3440014883 -20.1243974359 2.2436820513 NA 0.809659775354 0.468386781703 NA 0.884951977861 0.383600846492 0.367521367521 0.513157894737 0.452991452991 NC_045512.2:10353-10388 - 10353 10388 12 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10352;36;0&s=-&p=30&e=30&w=0&f=10353-10388-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10353-10388&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -17.8906833333 1.0 1.0 -17.8906833333 -15.2189583333 -2.67172499997 NA 0.568217483314 1.0 NA 1.0 0.568217483314 0.388888888889 0.734693877551 0.0 NC_045512.2:5859-5894 + 5859 5894 12 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5858;36;0&p=30&e=30&w=0&f=5859-5894", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5859-5894&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.8957583333 1.0 1.30555555556 -13.7073893617 -15.11685 -2.7789083333 0.969461175322 0.368347712844 0.990900211623 0.359247924467 1.0 0.359247924467 0.305555555556 0.0 0.0 NC_045512.2:20609-20641 - 20609 20641 11 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20608;33;0&s=-&p=30&e=30&w=0&f=20609-20641-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20609-20641&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -17.8969363636 1.0 1.24242424242 -14.4048512195 -17.4742636364 -0.422672727236 0.343053882468 1.0 1.0 0.343053882468 1.0 1.0 0.393939393939 0.0 0.0 NC_045512.2:18695-18760 + 18695 18760 22 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18694;66;0&p=30&e=30&w=0&f=18695-18760", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18695-18760&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.9201409091 1.0 1.13636363636 -15.769724 -10.6371363636 -7.28300454546 NA 0.99380758587 0.88521243692 NA 0.0174377340062 0.0174377340062 0.378787878788 0.857142857143 0.0 NC_045512.2:25311-25445 + 25311 25445 45 NotMaximal GUG NearCognate S,ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25310;135;0&p=30&e=30&w=0&f=25311-25445", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25311-25445&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.9249088889 0.992 1.52902590081 -11.7230904195 -19.3948555556 1.46994666666 NA 0.809659775354 0.468386781703 NA 0.87861305551 0.354217808888 0.385185185185 0.404797601199 0.525925925926 NC_045512.2:978-1094 + 978 1094 39 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;977;117;0&p=30&e=30&w=0&f=978-1094", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:978-1094&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.9358076923 1.0 1.2905982906 -13.8972814569 -17.6198923077 -0.315915384608 NA 0.390053719681 0.88767051929 NA 0.88767051929 0.094488035162 0.367521367521 0.508695652174 0.0 NC_045512.2:1503-1556 + 1503 1556 18 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1502;54;0&p=30&e=30&w=0&f=1503-1556", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1503-1556&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.9488277778 1.0 1.35185185185 -13.2772150685 -8.12248333333 -9.82634444447 0.977502848771 0.524489663031 0.986729610939 0.498420966954 1.0 0.524489663031 0.481481481481 0.642857142857 0.0 NC_045512.2:14561-14605 + 14561 14605 15 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14560;45;0&p=30&e=30&w=0&f=14561-14605", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14561-14605&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.94988 1.0 1.44444444444 -12.42684 -13.7757466667 -4.17413333333 0.830600683705 0.912111346248 1.0 0.830600683705 1.0 0.912111346248 0.488888888889 0.384615384615 0.0 NC_045512.2:11727-11777 - 11727 11777 17 Maximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;11726;51;0&s=-&p=30&e=30&w=0&f=11727-11777-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:11727-11777&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -17.9506882353 1.0 1.19607843137 -15.007952459 -13.9976588235 -3.95302941177 NA 1.0 0.225990558359 NA 1.0 0.225990558359 0.43137254902 0.0 0.0 NC_045512.2:10329-10397 + 10329 10397 23 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10328;69;0&p=30&e=30&w=0&f=10329-10397", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10329-10397&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.9521304348 1.0 1.17391304348 -15.2925555556 -12.4344217391 -5.51770869567 NA 0.921299039557 0.912111346248 NA 0.600361386944 0.557047045418 0.391304347826 0.392045454545 0.0 NC_045512.2:13197-13241 - 13197 13241 15 NotMaximal ACG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13196;45;0&s=-&p=30&e=30&w=0&f=13197-13241-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13197-13241&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -17.9585466667 1.0 0.866666666667 -20.7214 -14.1654266667 -3.79312000003 NA 0.364759889305 0.937336806121 NA 1.0 0.364759889305 0.488888888889 0.75 0.422222222222 NC_045512.2:18668-18760 + 18668 18760 31 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18667;93;0&p=30&e=30&w=0&f=18668-18760", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18668-18760&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.961816129 1.0 1.21505376344 -14.7827336283 -12.4774612903 -5.48435483868 NA 0.99380758587 0.88521243692 NA 0.92733843399 0.80635845678 0.408602150538 0.781512605042 0.0 NC_045512.2:20861-20896 - 20861 20896 12 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20860;36;0&s=-&p=30&e=30&w=0&f=20861-20896-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20861-20896&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -17.9637083333 1.0 1.52777777778 -11.7580636363 -22.2182 4.2544916667 NA 0.99225459873 1.0 NA 0.876125671496 0.868380270226 0.416666666667 0.0 0.0 NC_045512.2:18725-18760 + 18725 18760 12 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18724;36;0&p=30&e=30&w=0&f=18725-18760", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18725-18760&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.9662333333 1.0 0.972222222222 -18.4795542857 -8.08798333333 -9.87824999997 NA 0.99380758587 0.88521243692 NA 0.610675565685 0.604483151555 0.277777777778 2.88 0.0 NC_045512.2:21329-21382 - 21329 21382 18 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21328;54;0&s=-&p=30&e=30&w=0&f=21329-21382-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21329-21382&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -17.9680277778 1.0 1.24074074074 -14.4816940299 -12.5133555556 -5.45467222224 NA 0.468611427641 0.094488035162 NA 1.0 0.094488035162 0.333333333333 0.0 0.0 NC_045512.2:18392-18520 + 18392 18520 43 Maximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18391;129;0&p=30&e=30&w=0&f=18392-18520", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18392-18520&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -17.9899372093 1.0 1.37984496124 -13.0376511236 -12.4322116279 -5.55772558139 NA 0.817349829074 0.246075207553 NA 0.0174377340062 0.0174377340062 0.387596899225 0.211822660099 0.062015503876 NC_045512.2:24728-24763 - 24728 24763 12 NotMaximal AUA NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24727;36;0&s=-&p=30&e=30&w=0&f=24728-24763-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24728-24763&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -17.9957 1.0 1.80555555556 -9.96684923077 -28.333175 10.337475 NA 0.25216343806 0.443317597265 NA 0.953166205437 0.0174377340062 0.444444444444 0.0 0.0 NC_045512.2:25814-25879 + 25814 25879 22 Maximal AUG Canonical ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25813;66;0&p=30&e=30&w=0&f=25814-25879", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25814-25879&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.0047136364 1.0 1.75757575758 -10.2440612069 -14.2233818182 -3.78133181822 0.978368875142 0.094488035162 1.0 0.094488035162 1.0 0.094488035162 0.333333333333 0.55 0.0 NC_045512.2:24789-24899 - 24789 24899 37 Maximal GUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24788;111;0&s=-&p=30&e=30&w=0&f=24789-24899-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24789-24899&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -18.0163648649 1.0 1.63063063063 -11.0487099448 -17.7548864865 -0.261478378414 NA 1.0 0.0803776656357 NA 0.886817515872 0.0 0.414414414414 0.211428571429 0.72972972973 NC_045512.2:4062-4100 + 4062 4100 13 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4061;39;0&p=30&e=30&w=0&f=4062-4100", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4062-4100&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.0199769231 0.9932 2.14550004141 -8.39896367992 -11.4782384615 -6.54173846156 NA 0.424678495849 0.725866840306 NA 0.890405339411 0.094488035162 0.384615384615 0.0 0.0 NC_045512.2:12713-12745 - 12713 12745 11 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12712;33;0&s=-&p=30&e=30&w=0&f=12713-12745-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12713-12745&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -18.0232181818 1.0 1.06060606061 -16.99332 -16.5518181818 -1.47139999998 NA 0.706439850236 0.933778284226 NA 1.0 0.640218134462 0.515151515152 0.916666666667 0.0 NC_045512.2:27966-28031 - 27966 28031 22 Maximal AUA NearCognate ORF8 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27965;66;0&s=-&p=30&e=30&w=0&f=27966-28031-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27966-28031&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -18.0303 0.6934 4.69090176176 -3.84367461007 -15.0215272727 -3.00877272727 NA 0.094488035162 0.890809050952 NA 0.384948722123 0.0 0.363636363636 0.488888888889 0.0 NC_045512.2:17702-17731 - 17702 17731 10 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17701;30;0&s=-&p=30&e=30&w=0&f=17702-17731-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17702-17731&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -18.07549 1.0 1.03333333333 -17.4924096774 -20.74531 2.66982 NA 0.993911769494 0.706439850236 NA 0.911209506756 0.611561126485 0.466666666667 0.666666666667 0.0 NC_045512.2:17393-17470 + 17393 17470 26 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17392;78;0&p=30&e=30&w=0&f=17393-17470", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17393-17470&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.0903923077 1.0 1.35897435897 -13.3117981132 -9.58306923077 -8.50732307693 NA 0.783490151392 0.890405339411 NA 0.563346898909 0.517177274947 0.487179487179 0.678260869565 0.0 NC_045512.2:19268-19330 - 19268 19330 21 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19267;63;0&s=-&p=30&e=30&w=0&f=19268-19330-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19268-19330&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -18.0912857143 1.0 1.44444444444 -12.5247362637 -20.5674952381 2.4762095238 NA 0.364759889305 0.768324922676 NA 1.0 0.0174377340062 0.428571428571 0.0 0.0 NC_045512.2:7235-7282 - 7235 7282 16 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7234;48;0&s=-&p=30&e=30&w=0&f=7235-7282-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7235-7282&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -18.095575 1.0 1.3125 -13.7871047619 -17.70745625 -0.38811875 NA 0.421523685496 0.857287970047 NA 0.863981767866 0.339072114602 0.333333333333 0.0 0.0 NC_045512.2:27488-27538 + 27488 27538 17 Maximal AAG NearCognate ORF7a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27487;51;0&p=30&e=30&w=0&f=27488-27538", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27488-27538&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.1152235294 1.0 1.43137254902 -12.6558410959 -19.3611117647 1.24588823531 NA 0.094488035162 1.0 NA 1.0 0.094488035162 0.450980392157 0.425 0.0 NC_045512.2:5489-5536 - 5489 5536 16 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5488;48;0&s=-&p=30&e=30&w=0&f=5489-5536-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5489-5536&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -18.11554375 1.0 1.72916666667 -10.4764590361 -24.491525 6.37598125 NA 0.724479895816 0.796679146997 NA 1.0 0.512433664333 0.395833333333 0.615384615385 0.0 NC_045512.2:20814-20846 + 20814 20846 11 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20813;33;0&p=30&e=30&w=0&f=20814-20846", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20814-20846&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.1266727273 1.0 1.36363636364 -13.2928933334 -22.3799454545 4.25327272725 NA 0.655930327202 1.0 NA 0.837639589777 0.518030278366 0.272727272727 0.0 0.0 NC_045512.2:10212-10397 + 10212 10397 62 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10211;186;0&p=30&e=30&w=0&f=10212-10397", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10212-10397&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.1315387097 1.0 1.19892473118 -15.1231668162 -11.9038129032 -6.22772580647 NA 0.921299039557 0.672046231483 NA 0.477942373433 0.0 0.354838709677 0.341911764706 0.0 NC_045512.2:6979-7029 + 6979 7029 17 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6978;51;0&p=30&e=30&w=0&f=6979-7029", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6979-7029&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.1356117647 1.0 1.90196078431 -9.5352185567 -20.3329176471 2.19730588236 NA 0.764890118834 1.0 NA 1.0 0.764890118834 0.392156862745 0.515151515152 0.0 NC_045512.2:20960-21019 - 20960 21019 20 Maximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20959;60;0&s=-&p=30&e=30&w=0&f=20960-21019-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20960-21019&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -18.140955 1.0 1.23333333333 -14.7088824324 -16.18952 -1.951435 NA 0.67340061859 0.390053719681 NA 0.700589288621 0.0174377340062 0.383333333333 0.0 0.0 NC_045512.2:15467-15499 - 15467 15499 11 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15466;33;0&s=-&p=30&e=30&w=0&f=15467-15499-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15467-15499&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -18.1565454545 1.0 1.09090909091 -16.6435 -7.02740909091 -11.1291363636 NA 0.71279179554 0.599794888491 NA 0.68944489663 0.0174377340062 0.515151515152 0.0 0.0 NC_045512.2:10353-10403 - 10353 10403 17 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10352;51;0&s=-&p=30&e=30&w=0&f=10353-10403-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10353-10403&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -18.1568529412 1.0 1.07843137255 -16.8363545455 -15.6486235294 -2.50822941179 NA 0.568217483314 1.0 NA 1.0 0.568217483314 0.372549019608 0.566666666667 0.0 NC_045512.2:4904-5011 - 4904 5011 36 Maximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4903;108;0&s=-&p=30&e=30&w=0&f=4904-5011-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4904-5011&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -18.1572305556 1.0 1.88888888889 -9.61265147061 -25.6390611111 7.48183055551 NA 0.094488035162 0.292749470943 NA 0.984346410549 0.094488035162 0.37962962963 0.257142857143 0.0 NC_045512.2:10194-10397 + 10194 10397 68 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10193;204;0&p=30&e=30&w=0&f=10194-10397", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10194-10397&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.1620029412 1.0 1.19117647059 -15.2471135803 -11.7946514706 -6.36735147061 NA 0.921299039557 0.672046231483 NA 1.0 0.59334527104 0.357843137255 0.306306306306 0.0 NC_045512.2:3681-3716 - 3681 3716 12 Maximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3680;36;0&s=-&p=30&e=30&w=0&f=3681-3716-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3681-3716&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -18.1623166667 1.0 2.08333333333 -8.71791200002 -33.1227916667 14.960475 NA 0.890405339411 1.0 NA 0.884317108904 0.884317108904 0.388888888889 0.8 0.0 NC_045512.2:9093-9191 + 9093 9191 33 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9092;99;0&p=30&e=30&w=0&f=9093-9191", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9093-9191&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.1667939394 1.0 1.37373737374 -13.2243573529 -17.1344121212 -1.03238181819 NA 0.673065277552 0.415223832004 NA 0.094488035162 0.0174377340062 0.414141414141 0.471428571429 0.0 NC_045512.2:9090-9191 + 9090 9191 34 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9089;102;0&p=30&e=30&w=0&f=9090-9191", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9090-9191&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.1691205882 1.0 1.35294117647 -13.42935 -16.57755 -1.5915705882 NA 0.673065277552 0.415223832004 NA 0.094488035162 0.0174377340062 0.421568627451 0.441558441558 0.0 NC_045512.2:21345-21392 + 21345 21392 16 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21344;48;0&p=30&e=30&w=0&f=21345-21392", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21345-21392&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.18058125 1.0 1.6875 -10.7736777778 -22.07835625 3.897775 NA 0.847657496337 1.0 NA 0.568181670194 0.480293016441 0.291666666667 0.0 0.0 NC_045512.2:24273-24326 + 24273 24326 18 NotMaximal AUA NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24272;54;0&p=30&e=30&w=0&f=24273-24326", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24273-24326&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.1844555556 1.0 1.12962962963 -16.0977147541 -9.70335 -8.4811055556 NA 0.25216343806 0.848933745727 NA 0.893739215367 0.25216343806 0.314814814815 0.0 0.814814814815 NC_045512.2:24225-24326 + 24225 24326 34 NotMaximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24224;102;0&p=30&e=30&w=0&f=24225-24326", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24225-24326&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.1969088235 1.0 1.23529411765 -14.7308309524 -10.9515088235 -7.24539999997 NA 0.25216343806 0.848933745727 NA 0.653088067719 0.246970535569 0.362745098039 0.0 0.470588235294 NC_045512.2:4784-4831 - 4784 4831 16 Maximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4783;48;0&s=-&p=30&e=30&w=0&f=4784-4831-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4784-4831&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -18.19895 1.0 1.95833333333 -9.29308085106 -25.596325 7.397375 NA 0.094488035162 0.348497476803 NA 0.0883998046557 0.0883998046557 0.395833333333 0.0 0.0 NC_045512.2:19142-19300 + 19142 19300 53 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19141;159;0&p=30&e=30&w=0&f=19142-19300", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19142-19300&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.2019849057 1.0 1.37106918239 -13.2757596331 -12.6900528302 -5.51193207551 NA 0.768324922676 0.364759889305 NA 0.92826306365 0.0174377340062 0.383647798742 0.172077922078 0.0 NC_045512.2:25810-25875 - 25810 25875 22 Maximal AUU NearCognate ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25809;66;0&s=-&p=30&e=30&w=0&f=25810-25875-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25810-25875&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -18.2035318182 1.0 1.81818181818 -10.0119425 -21.7058136364 3.50228181816 NA 0.864958489337 0.833810841608 NA 0.477942373433 0.0883998046557 0.318181818182 0.634615384615 0.0 NC_045512.2:5106-5213 + 5106 5213 36 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5105;108;0&p=30&e=30&w=0&f=5106-5213", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5106-5213&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.2052444444 1.0 1.34259259259 -13.5597682758 -15.6284388889 -2.57680555551 NA 1.0 0.706439850236 NA 0.909757447501 0.70408595149 0.37962962963 0.257142857143 0.0 NC_045512.2:12741-12842 - 12741 12842 34 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12740;102;0&s=-&p=30&e=30&w=0&f=12741-12842-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12741-12842&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -18.2126647059 1.0 1.3137254902 -13.8633716418 -19.4106235294 1.19795882351 NA 0.832462965978 0.0174377340062 NA 0.936021487872 0.0174377340062 0.401960784314 0.485714285714 0.0686274509804 NC_045512.2:13041-13085 + 13041 13085 15 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13040;45;0&p=30&e=30&w=0&f=13041-13085", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13041-13085&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.2192066667 1.0 1.17777777778 -15.4691377359 -16.29362 -1.9255866667 NA 0.789656519616 1.0 NA 1.0 0.789656519616 0.4 0.0 0.0 NC_045512.2:25020-25058 + 25020 25058 13 Maximal AUA NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25019;39;0&p=30&e=30&w=0&f=25020-25058", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25020-25058&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.2215538462 1.0 1.20512820513 -15.120012766 -19.0252 0.8036461538 NA 0.0174377340062 0.881305551034 NA 0.573433175973 0.0 0.230769230769 0.0 0.923076923077 NC_045512.2:1815-1871 - 1815 1871 19 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1814;57;0&s=-&p=30&e=30&w=0&f=1815-1871-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1815-1871&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -18.2271631579 1.0 2.26315789474 -8.0538627907 -20.4286 2.2014368421 0.0894774540127 0.424593846655 0.526114276412 0.0803776656357 0.330125345922 0.0803776656357 0.368421052632 0.0 0.0 NC_045512.2:4155-4202 + 4155 4202 16 Maximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4154;48;0&p=30&e=30&w=0&f=4155-4202", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4155-4202&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.23890625 1.0 1.9375 -9.41362903226 -19.0733375 0.83443125 NA 0.226869607684 0.44354875468 NA 0.094488035162 0.0 0.458333333333 0.0 0.0 NC_045512.2:3495-3536 + 3495 3536 14 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3494;42;0&p=30&e=30&w=0&f=3495-3536", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3495-3536&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.2408571429 0.9997 1.92942055795 -9.45405970083 -10.2764214286 -7.96443571433 NA 0.094488035162 0.993911769494 NA 0.890405339411 0.0883998046557 0.380952380952 0.0 0.0 NC_045512.2:10506-10625 - 10506 10625 40 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10505;120;0&s=-&p=30&e=30&w=0&f=10506-10625-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10506-10625&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -18.2409225 1.0 1.19166666667 -15.3070678322 -13.1656725 -5.07525 NA 1.0 0.876610776494 NA 0.592723425037 0.504834771284 0.391666666667 0.0 0.0166666666667 NC_045512.2:18513-18551 + 18513 18551 13 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18512;39;0&p=30&e=30&w=0&f=18513-18551", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18513-18551&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.2423307692 1.0 1.20512820513 -15.1372531915 -16.4507769231 -1.79155384612 NA 0.997366107765 0.276405664985 NA 1.0 0.276405664985 0.307692307692 1.95 0.0 NC_045512.2:2271-2309 + 2271 2309 13 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2270;39;0&p=30&e=30&w=0&f=2271-2309", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:2271-2309&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.2445923077 1.0 2.38461538462 -7.65095806452 -11.5177307692 -6.72686153847 NA 0.094488035162 0.390053719681 NA 0.829659775354 0.094488035162 0.358974358974 0.0 0.0 NC_045512.2:6647-6697 - 6647 6697 17 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6646;51;0&s=-&p=30&e=30&w=0&f=6647-6697-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6647-6697&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -18.2460764706 1.0 1.86274509804 -9.79526210527 -20.4275470588 2.18147058822 NA 0.0174377340062 1.0 NA 0.518870258831 0.0174377340062 0.411764705882 0.0 0.0 NC_045512.2:4359-4427 + 4359 4427 23 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4358;69;0&p=30&e=30&w=0&f=4359-4427", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4359-4427&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.2497434783 1.0 1.72463768116 -10.5817840336 -16.0308913043 -2.21885217395 NA 0.706439850236 0.464779423734 NA 1.0 0.259107927723 0.376811594203 0.836363636364 0.0 NC_045512.2:1815-1901 - 1815 1901 29 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1814;87;0&s=-&p=30&e=30&w=0&f=1815-1901-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1815-1901&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -18.2613241379 1.0 2.26436781609 -8.06464568527 -20.228137931 1.96681379313 NA 0.424593846655 0.094488035162 NA 0.63088718867 0.0 0.413793103448 0.552380952381 0.0 NC_045512.2:19268-19324 - 19268 19324 19 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19267;57;0&s=-&p=30&e=30&w=0&f=19268-19324-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19268-19324&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -18.2671631579 1.0 1.42105263158 -12.8546703704 -20.8675368421 2.60037368421 NA 0.364759889305 0.768324922676 NA 0.452648543057 0.0174377340062 0.421052631579 0.0 0.0 NC_045512.2:13026-13085 + 13026 13085 20 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13025;60;0&p=30&e=30&w=0&f=13026-13085", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13026-13085&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.27458 1.0 1.21666666667 -15.0202027397 -14.629895 -3.644685 NA 0.789656519616 1.0 NA 0.965902653427 0.776008464919 0.416666666667 0.0 0.0 NC_045512.2:10326-10397 + 10326 10397 24 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10325;72;0&p=30&e=30&w=0&f=10326-10397", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10326-10397&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.275625 1.0 1.16666666667 -15.6648214286 -12.3232125 -5.9524125 NA 0.921299039557 0.877717727495 NA 0.947234250366 0.780644636171 0.388888888889 0.375 0.0 NC_045512.2:24026-24079 - 24026 24079 18 NotMaximal AUC NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24025;54;0&s=-&p=30&e=30&w=0&f=24026-24079-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24026-24079&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -18.2817722222 1.0 1.83333333333 -9.97187575756 -26.28015 7.9983777778 NA 0.454432687612 0.890405339411 NA 0.368347712844 0.094488035162 0.388888888889 0.0 0.111111111111 NC_045512.2:22970-23035 - 22970 23035 22 Maximal AGG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22969;66;0&s=-&p=30&e=30&w=0&f=22970-23035-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22970-23035&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -18.2861909091 0.7788 5.42807833901 -3.36881484884 -15.3287090909 -2.95748181819 NA 0.411456942862 0.394094090835 NA 0.0 0.0 0.393939393939 0.392857142857 0.0 NC_045512.2:18449-18520 + 18449 18520 24 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18448;72;0&p=30&e=30&w=0&f=18449-18520", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18449-18520&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.2938666667 1.0 1.34722222222 -13.5789525773 -12.540425 -5.7534416667 NA 0.817349829074 0.905492430409 NA 1.0 0.729461175322 0.430555555556 0.315789473684 0.0 NC_045512.2:3681-3710 - 3681 3710 10 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3680;30;0&s=-&p=30&e=30&w=0&f=3681-3710-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3681-3710&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -18.29477 1.0 2.33333333333 -7.84061571429 -36.60161 18.30684 NA 0.890405339411 1.0 NA 0.419876281947 0.419876281947 0.4 0.9375 0.0 NC_045512.2:16027-16062 - 16027 16062 12 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16026;36;0&s=-&p=30&e=30&w=0&f=16027-16062-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16027-16062&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -18.3055666667 1.0 1.52777777778 -11.9818254546 -31.3810166667 13.07545 NA 0.845205925444 1.0 NA 0.606993325737 0.55164577568 0.361111111111 0.0 0.0 NC_045512.2:21329-21388 - 21329 21388 20 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21328;60;0&s=-&p=30&e=30&w=0&f=21329-21388-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21329-21388&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -18.307905 1.0 1.35 -13.5614111111 -12.6097 -5.698205 NA 0.468611427641 0.094488035162 NA 0.870874165717 0.094488035162 0.316666666667 0.0 0.0 NC_045512.2:19130-19300 + 19130 19300 57 Maximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19129;171;0&p=30&e=30&w=0&f=19130-19300", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19130-19300&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.3101105263 1.0 1.3918128655 -13.1555836134 -12.9118298246 -5.39828070174 NA 0.768324922676 0.0174377340062 NA 1.0 0.0174377340062 0.368421052632 0.173427991886 0.0 NC_045512.2:5489-5542 - 5489 5542 18 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5488;54;0&s=-&p=30&e=30&w=0&f=5489-5542-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5489-5542&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -18.3101111111 1.0 1.83333333333 -9.98733333333 -22.5727888889 4.26267777779 NA 0.724479895816 0.796679146997 NA 0.094488035162 0.094488035162 0.425925925926 0.45 0.0 NC_045512.2:8646-8684 + 8646 8684 13 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8645;39;0&p=30&e=30&w=0&f=8646-8684", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8646-8684&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.3174307692 1.0 1.92307692308 -9.52506399998 -16.8142076923 -1.50322307689 0.456955884747 0.477405176624 0.706439850236 0.251284388735 0.893042487384 0.271733680612 0.307692307692 0.0 0.0 NC_045512.2:18671-18760 + 18671 18760 30 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18670;90;0&p=30&e=30&w=0&f=18671-18760", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18671-18760&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.3253766667 1.0 1.2 -15.2711472222 -12.9086066667 -5.41677000003 NA 0.99380758587 0.88521243692 NA 0.251398339573 0.251398339573 0.4 0.857142857143 0.0 NC_045512.2:5790-5819 - 5790 5819 10 Maximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5789;30;0&s=-&p=30&e=30&w=0&f=5790-5819-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5790-5819&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -18.34037 1.0 1.46666666667 -12.5047977273 -18.53869 0.19832 NA 0.623988279342 0.912111346248 NA 0.493527592382 0.28785609637 0.366666666667 1.07142857143 0.0 NC_045512.2:3675-3749 + 3675 3749 25 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3674;75;0&p=30&e=30&w=0&f=3675-3749", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3675-3749&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.340836 1.0 2.05333333333 -8.93222532468 -14.407768 -3.933068 NA 0.7689825818 0.912111346248 NA 0.805183135276 0.535409409084 0.36 0.426136363636 0.0 NC_045512.2:14564-14605 + 14564 14605 14 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14563;42;0&p=30&e=30&w=0&f=14564-14605", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14564-14605&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.3414285714 1.0 1.45238095238 -12.6285245901 -14.3488214286 -3.99260714283 NA 0.912111346248 1.0 NA 0.884203158066 0.700237668891 0.5 0.403846153846 0.0 NC_045512.2:2991-3203 + 2991 3203 71 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2990;213;0&p=30&e=30&w=0&f=2991-3203", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:2991-3203&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.3440605634 0.9585 2.42547643999 -7.56307513896 -18.7729971831 0.428936619699 0.964147810516 0.094488035162 0.832873188996 0.085388246785 1.0 0.085388246785 0.399061032864 0.0 0.0 NC_045512.2:13067-13111 - 13067 13111 15 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13066;45;0&s=-&p=30&e=30&w=0&f=13067-13111-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13067-13111&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -18.34728 1.0 1.95555555556 -9.38213181818 -29.7155333333 11.3682533333 NA 0.0174377340062 1.0 NA 0.840680449292 0.0 0.377777777778 0.0 0.0 NC_045512.2:17114-17161 - 17114 17161 16 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17113;48;0&s=-&p=30&e=30&w=0&f=17114-17161-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17114-17161&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -18.3497875 1.0 1.27083333333 -14.4391770492 -12.8569875 -5.4928 NA 0.479749308156 1.0 NA 1.0 0.479749308156 0.479166666667 0.4 0.0 NC_045512.2:25296-25445 + 25296 25445 50 Maximal AGG NearCognate S,ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25295;150;0&p=30&e=30&w=0&f=25296-25445", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25296-25445&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.35742 0.9928 1.57612331073 -11.6471978271 -18.996536 0.639116 NA 0.809659775354 0.468386781703 NA 0.983005046394 0.383600846492 0.393333333333 0.352941176471 0.573333333333 NC_045512.2:10938-10979 + 10938 10979 14 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10937;42;0&p=30&e=30&w=0&f=10938-10979", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10938-10979&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.3715357143 1.0 1.11904761905 -16.4171170213 -15.5951928571 -2.77634285716 0.720485104998 0.094488035162 0.595021976233 0.094488035162 1.0 0.094488035162 0.404761904762 0.0 0.0 NC_045512.2:20054-20083 + 20054 20083 10 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20053;30;0&p=30&e=30&w=0&f=20054-20083", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20054-20083&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.37785 1.0 1.73333333333 -10.6026057692 -24.01852 5.64067 NA 0.0174377340062 0.0174377340062 NA 0.995630799284 0.0174377340062 0.366666666667 0.0 0.0 NC_045512.2:10191-10397 + 10191 10397 69 Maximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10190;207;0&p=30&e=30&w=0&f=10191-10397", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10191-10397&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.380657971 1.0 1.20289855072 -15.2803060241 -11.782684058 -6.59797391303 NA 0.921299039557 0.659684193391 NA 0.457834934071 0.217769819307 0.36231884058 0.294452347084 0.0 NC_045512.2:717-878 + 717 878 54 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;716;162;0&p=30&e=30&w=0&f=717-878", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:717-878&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.3811 1.0 1.46913580247 -12.511505042 -12.4088351852 -5.97226481481 NA 0.0894774540127 0.544821748331 NA 0.983005046394 0.0174377340062 0.456790123457 0.592105263158 0.253086419753 NC_045512.2:10935-10979 + 10935 10979 15 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10934;45;0&p=30&e=30&w=0&f=10935-10979", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10935-10979&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.3955466667 1.0 1.11111111111 -16.555992 -14.6683466667 -3.72720000003 NA 0.094488035162 0.595021976233 NA 0.862435292203 0.0174377340062 0.4 0.0 0.0 NC_045512.2:18434-18520 + 18434 18520 29 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18433;87;0&p=30&e=30&w=0&f=18434-18520", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18434-18520&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.3974724138 1.0 1.33333333333 -13.7981043104 -12.6313103448 -5.76616206897 NA 0.817349829074 0.699820934397 NA 0.264118508872 0.264118508872 0.402298850575 0.295918367347 0.0 NC_045512.2:24728-24814 - 24728 24814 29 NotMaximal AUC NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24727;87;0&s=-&p=30&e=30&w=0&f=24728-24814-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24728-24814&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -18.3996551724 1.0 1.97701149425 -9.30680232557 -26.9292275862 8.52957241381 NA 0.25216343806 0.443317597265 NA 0.454917792609 0.0174377340062 0.448275862069 0.0 0.137931034483 NC_045512.2:6234-6347 + 6234 6347 38 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6233;114;0&p=30&e=30&w=0&f=6234-6347", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6234-6347&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.4079947368 0.9813 1.35874313495 -13.5478106665 -13.1200421053 -5.28795263154 NA 0.363337131695 0.637655868468 NA 0.511492755982 0.0894774540127 0.359649122807 0.814285714286 0.0877192982456 NC_045512.2:25359-25445 + 25359 25445 29 NotMaximal AAG NearCognate S,ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25358;87;0&p=30&e=30&w=0&f=25359-25445", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25359-25445&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.411037931 0.9914 1.67006221377 -11.0241629199 -21.1720241379 2.76098620693 NA 0.809659775354 0.468386781703 NA 1.0 0.383600846492 0.32183908046 0.453125 0.264367816092 NC_045512.2:12534-12578 - 12534 12578 15 Maximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12533;45;0&s=-&p=30&e=30&w=0&f=12534-12578-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12534-12578&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -18.4126 1.0 1.28888888889 -14.285637931 -8.53526666667 -9.87733333333 NA 1.0 1.0 NA 0.878788865375 0.878788865375 0.444444444444 0.0 0.0 NC_045512.2:25841-25879 + 25841 25879 13 NotMaximal AUA NearCognate ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25840;39;0&p=30&e=30&w=0&f=25841-25879", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25841-25879&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.4146923077 1.0 2.02564102564 -9.09079746836 -10.6891384615 -7.72555384616 NA 0.094488035162 1.0 NA 0.858980953931 0.094488035162 0.282051282051 1.3 0.0 NC_045512.2:18999-19037 + 18999 19037 13 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18998;39;0&p=30&e=30&w=0&f=18999-19037", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18999-19037&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.4151769231 1.0 1.30769230769 -14.0821941177 -19.7644615385 1.34928461536 NA 0.343053882468 0.0 NA 0.703705030116 0.0 0.384615384615 0.722222222222 0.0 NC_045512.2:4692-4832 + 4692 4832 47 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4691;141;0&p=30&e=30&w=0&f=4692-4832", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4692-4832&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.4151787234 1.0 1.60992907801 -11.4385030837 -15.4827085106 -2.93247021276 NA 0.912111346248 0.455663356666 NA 0.368347712844 0.094488035162 0.368794326241 0.224880382775 0.0 NC_045512.2:2988-3203 + 2988 3203 72 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2987;216;0&p=30&e=30&w=0&f=2988-3203", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:2988-3203&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.42565 0.9591 2.39641889684 -7.68882686758 -18.4494527778 0.0238027777778 NA 0.094488035162 0.832873188996 NA 0.99225459873 0.085388246785 0.398148148148 0.0 0.0 NC_045512.2:2127-2180 + 2127 2180 18 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2126;54;0&p=30&e=30&w=0&f=2127-2180", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:2127-2180&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.4263611111 1.0 2.87037037037 -6.41950645161 -20.6394444444 2.21308333334 0.094488035162 0.498420966954 0.878993976884 0.094488035162 0.692160182321 0.278469803028 0.407407407407 0.482142857143 0.0 NC_045512.2:1170-1226 + 1170 1226 19 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1169;57;0&p=30&e=30&w=0&f=1170-1226", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1170-1226&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.4316526316 1.0 1.89473684211 -9.72781666668 -16.0092894737 -2.42236315792 NA 1.0 0.586309620706 NA 0.889011883445 0.498420966954 0.438596491228 0.419117647059 0.0 NC_045512.2:4158-4202 + 4158 4202 15 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4157;45;0&p=30&e=30&w=0&f=4158-4202", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4158-4202&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.4320066667 1.0 1.97777777778 -9.3195539326 -19.66784 1.2358333333 NA 0.226869607684 0.44354875468 NA 0.792850398828 0.0 0.444444444444 0.0 0.0 NC_045512.2:705-878 + 705 878 58 Maximal ACG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;704;174;0&p=30&e=30&w=0&f=705-878", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:705-878&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.4439775862 1.0 1.47701149425 -12.4873622568 -12.4769068966 -5.96707068965 NA 0.0894774540127 0.52916815888 NA 0.97661728797 0.0174377340062 0.465517241379 0.636585365854 0.304597701149 NC_045512.2:22394-22423 - 22394 22423 10 NotMaximal AUC NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22393;30;0&s=-&p=30&e=30&w=0&f=22394-22423-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22394-22423&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -18.44763 1.0 3.9 -4.73016153846 -35.34391 16.89628 NA 0.289148624451 0.98648868631 NA 1.0 0.289148624451 0.233333333333 0.0 0.0 NC_045512.2:1053-1094 + 1053 1094 14 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1052;42;0&p=30&e=30&w=0&f=1053-1094", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1053-1094&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.45275 1.0 1.04761904762 -17.6139886364 -17.9826785714 -0.470071428571 NA 0.390053719681 1.0 NA 1.0 0.390053719681 0.380952380952 0.0 0.0 NC_045512.2:18413-18520 + 18413 18520 36 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18412;108;0&p=30&e=30&w=0&f=18413-18520", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18413-18520&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.4562305556 1.0 1.40740740741 -13.1136375 -12.2973361111 -6.15889444449 NA 0.817349829074 0.699820934397 NA 0.994807097509 0.52378967931 0.37962962963 0.27 0.0 NC_045512.2:10545-10583 + 10545 10583 13 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10544;39;0&p=30&e=30&w=0&f=10545-10583", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10545-10583&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.4579769231 1.0 1.41025641026 -13.0883836364 -15.3151153846 -3.14286153848 NA 0.912111346248 1.0 NA 0.58040696728 0.396441478105 0.435897435897 0.0 0.0 NC_045512.2:5121-5213 + 5121 5213 31 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5120;93;0&p=30&e=30&w=0&f=5121-5213", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5121-5213&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.4702483871 1.0 1.34408602151 -13.7418648 -14.8270612903 -3.64318709678 0.27465733355 1.0 0.706439850236 0.27465733355 0.890405339411 0.706439850236 0.408602150538 0.257617728532 0.0 NC_045512.2:28146-28208 - 28146 28208 21 Maximal AUA NearCognate ORF8 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28145;63;0&s=-&p=30&e=30&w=0&f=28146-28208-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28146-28208&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -18.4768666667 0.7013 5.2888086872 -3.49357818736 -29.4232 10.9463333333 NA 0.0174377340062 0.68482500407 NA 0.647429594661 0.0174377340062 0.380952380952 0.881118881119 0.0 NC_045512.2:4065-4100 + 4065 4100 12 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4064;36;0&p=30&e=30&w=0&f=4065-4100", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4065-4100&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.479325 0.9927 2.29651393375 -8.04668533832 -10.6062333333 -7.87309166667 NA 0.424678495849 0.725866840306 NA 0.094488035162 0.094488035162 0.416666666667 0.0 0.0 NC_045512.2:26579-26650 + 26579 26650 24 Maximal AUG Canonical M =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26578;72;0&p=30&e=30&w=0&f=26579-26650", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26579-26650&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.481825 1.0 1.36111111111 -13.5784836735 -24.4886333333 6.00680833333 0.990900211623 0.301699495361 0.637405176624 0.085388246785 1.0 0.094488035162 0.375 0.0 0.0 NC_045512.2:16872-16901 + 16872 16901 10 Maximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16871;30;0&p=30&e=30&w=0&f=16872-16901", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16872-16901&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.48541 1.0 1.0 -18.48541 -19.14715 0.66174 NA 0.844587335178 0.822796679147 NA 1.0 0.759449780238 0.3 0.0 0.0 NC_045512.2:20150-20197 - 20150 20197 16 Maximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20149;48;0&s=-&p=30&e=30&w=0&f=20150-20197-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20150-20197&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -18.49745 1.0 1.47916666667 -12.5053183099 -25.108525 6.611075 NA 1.0 0.0 NA 1.0 0.0 0.291666666667 0.0 0.0 NC_045512.2:25810-25869 - 25810 25869 20 NotMaximal AGG NearCognate ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25809;60;0&s=-&p=30&e=30&w=0&f=25810-25869-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25810-25869&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -18.506225 1.0 1.86666666667 -9.91404910714 -20.09513 1.588905 NA 0.864958489337 0.833810841608 NA 0.448083998047 0.264118508872 0.333333333333 0.625 0.0 NC_045512.2:11794-11844 + 11794 11844 17 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;11793;51;0&p=30&e=30&w=0&f=11794-11844", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:11794-11844&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.5123470588 1.0 1.17647058824 -15.735495 -21.9759352941 3.46358823532 NA 0.825710564871 0.258355852189 NA 0.637799120951 0.258355852189 0.450980392157 0.0 0.0 NC_045512.2:5082-5117 - 5082 5117 12 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5081;36;0&s=-&p=30&e=30&w=0&f=5082-5117-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5082-5117&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -18.5160333333 1.0 1.69444444444 -10.9274950819 -18.6483083333 0.132275000033 0.275301969722 0.617030766726 0.262939931629 0.085388246785 1.0 0.262939931629 0.25 0.0 0.0 NC_045512.2:18677-18760 + 18677 18760 28 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18676;84;0&p=30&e=30&w=0&f=18677-18760", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18677-18760&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.5204321429 1.0 1.15476190476 -16.0383123712 -12.2003428571 -6.32008928576 NA 0.99380758587 0.88521243692 NA 0.881624613381 0.669760703239 0.404761904762 0.6 0.0 NC_045512.2:25344-25445 + 25344 25445 34 NotMaximal CUG NearCognate S,ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25343;102;0&p=30&e=30&w=0&f=25344-25445", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25344-25445&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.5220911765 0.9894 1.63155388832 -11.35242379 -22.0540382353 3.53194705879 NA 0.809659775354 0.468386781703 NA 0.690786260785 0.383600846492 0.362745098039 0.3 0.372549019608 NC_045512.2:17276-17377 - 17276 17377 34 Maximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17275;102;0&s=-&p=30&e=30&w=0&f=17276-17377-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17276-17377&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -18.5258735294 1.0 1.00980392157 -18.3460106796 -15.8747382353 -2.65113529411 NA 1.0 0.0 NA 0.343053882468 0.0 0.352941176471 0.31875 0.0 NC_045512.2:3627-3749 + 3627 3749 41 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3626;123;0&p=30&e=30&w=0&f=3627-3749", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3627-3749&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.5298682927 1.0 1.94308943089 -9.53629205022 -14.2758292683 -4.25403902441 0.094488035162 0.7689825818 0.094488035162 0.094488035162 0.477942373433 0.094488035162 0.341463414634 0.279545454545 0.0 NC_045512.2:9562-9615 + 9562 9615 18 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9561;54;0&p=30&e=30&w=0&f=9562-9615", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9562-9615&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.5326166667 1.0 1.2962962963 -14.29659 -12.6345777778 -5.89803888892 NA 0.916877747029 1.0 NA 0.368347712844 0.368347712844 0.277777777778 0.0 0.722222222222 NC_045512.2:27467-27496 - 27467 27496 10 NotMaximal AAG NearCognate ORF7a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27466;30;0&s=-&p=30&e=30&w=0&f=27467-27496-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27467-27496&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -18.53809 1.0 1.2 -15.4484083333 -19.21236 0.67427 NA 0.974706169624 0.800768354224 NA 1.0 0.775474523848 0.333333333333 0.0 0.0 NC_045512.2:18809-18844 + 18809 18844 12 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18808;36;0&p=30&e=30&w=0&f=18809-18844", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18809-18844&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.5382916667 1.0 1.91666666667 -9.67215217393 -1.566725 -16.9715666667 0.857343317597 0.25216343806 1.0 0.250047208204 1.0 0.25216343806 0.388888888889 0.0 0.0277777777778 NC_045512.2:6970-7029 + 6970 7029 20 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6969;60;0&p=30&e=30&w=0&f=6970-7029", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6970-7029&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.54005 1.0 1.83333333333 -10.1127545455 -21.532015 2.991965 NA 0.764890118834 1.0 NA 0.368347712844 0.094488035162 0.366666666667 0.495867768595 0.0 NC_045512.2:15902-15946 - 15902 15946 15 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;15901;45;0&s=-&p=30&e=30&w=0&f=15902-15946-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:15902-15946&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -18.5477933333 1.0 1.15555555556 -16.050975 -10.98378 -7.5640133333 NA 1.0 0.659374898258 NA 0.597105648706 0.597105648706 0.422222222222 0.0 0.0 NC_045512.2:18299-18364 + 18299 18364 22 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18298;66;0&p=30&e=30&w=0&f=18299-18364", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18299-18364&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.5543045455 1.0 1.28787878788 -14.4068717647 -8.94731818182 -9.60698636368 NA 0.890405339411 0.267455640566 NA 0.880153019697 0.267455640566 0.469696969697 0.564102564103 0.0 NC_045512.2:10226-10261 - 10226 10261 12 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10225;36;0&s=-&p=30&e=30&w=0&f=10226-10261-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10226-10261&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -18.555 1.0 1.63888888889 -11.3216949153 -31.665 13.11 NA 0.368347712844 0.974706169624 NA 1.0 0.343053882468 0.333333333333 1.02857142857 0.0 NC_045512.2:2712-2753 + 2712 2753 14 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2711;42;0&p=30&e=30&w=0&f=2712-2753", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:2712-2753&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.5573142857 1.0 2.21428571429 -8.38072258064 -16.2693285714 -2.28798571427 NA 0.094488035162 0.477942373433 NA 0.993661077649 0.094488035162 0.47619047619 0.4375 0.0 NC_045512.2:18731-18760 + 18731 18760 10 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18730;30;0&p=30&e=30&w=0&f=18731-18760", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18731-18760&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.55806 1.0 0.966666666667 -19.1979931034 -7.55115 -11.00691 NA 0.99380758587 0.88521243692 NA 0.0174377340062 0.0174377340062 0.3 3.0 0.0 NC_045512.2:17771-17854 - 17771 17854 28 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17770;84;0&s=-&p=30&e=30&w=0&f=17771-17854-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17771-17854&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -18.5617142857 1.0 1.25 -14.8493714286 -15.4357714286 -3.12594285713 NA 1.0 0.450678821423 NA 0.249438385154 0.0174377340062 0.404761904762 0.0 0.0 NC_045512.2:23463-23510 + 23463 23510 16 NotMaximal GUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23462;48;0&p=30&e=30&w=0&f=23463-23510", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23463-23510&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.5659875 1.0 2.85416666667 -6.50487153285 -18.57895625 0.01296875 NA 0.460371154159 0.715487546801 NA 0.635757773075 0.343053882468 0.375 0.6 0.0 NC_045512.2:22760-22804 - 22760 22804 15 NotMaximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22759;45;0&s=-&p=30&e=30&w=0&f=22760-22804-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22760-22804&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -18.5673933333 1.0 3.11111111111 -5.96809071428 -22.2423733333 3.67498000003 NA 0.276959140485 0.815874979652 NA 0.745531499267 0.276959140485 0.422222222222 0.535714285714 0.0 NC_045512.2:18416-18520 + 18416 18520 35 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18415;105;0&p=30&e=30&w=0&f=18416-18520", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18416-18520&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.5759057143 1.0 1.4380952381 -12.9170205298 -12.6395142857 -5.93639142859 NA 0.817349829074 0.699820934397 NA 0.0174377340062 0.0174377340062 0.380952380952 0.28 0.0 NC_045512.2:17276-17323 - 17276 17323 16 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17275;48;0&s=-&p=30&e=30&w=0&f=17276-17323-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17276-17323&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -18.57906875 1.0 1.02083333333 -18.1999040816 -16.9364125 -1.64265625 0.519407455641 1.0 0.813872700635 0.500029301644 0.853700146508 0.813872700635 0.291666666667 0.0 0.0 NC_045512.2:14567-14605 + 14567 14605 13 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14566;39;0&p=30&e=30&w=0&f=14567-14605", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14567-14605&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.6031 1.0 1.48717948718 -12.5089810345 -15.4796 -3.1235 NA 0.912111346248 1.0 NA 0.969265831027 0.881377177275 0.487179487179 0.464285714286 0.0 NC_045512.2:4334-4408 - 4334 4408 25 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4333;75;0&s=-&p=30&e=30&w=0&f=4334-4408-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4334-4408&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -18.61052 1.0 1.96 -9.49516326531 -19.73294 1.12242 0.701471593684 0.979550708123 0.0174377340062 0.0174377340062 1.0 0.0174377340062 0.36 0.412087912088 0.0 NC_045512.2:4904-5005 - 4904 5005 34 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4903;102;0&s=-&p=30&e=30&w=0&f=4904-5005-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4904-5005&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -18.6105529412 1.0 1.83333333333 -10.1512106952 -26.4466823529 7.83612941174 NA 0.094488035162 0.292749470943 NA 1.0 0.094488035162 0.372549019608 0.0 0.0 NC_045512.2:25847-25885 - 25847 25885 13 NotMaximal AAG NearCognate ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25846;39;0&s=-&p=30&e=30&w=0&f=25847-25885-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25847-25885&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -18.6151615385 1.0 1.69230769231 -10.9998681818 -20.7340461538 2.11888461535 NA 0.301797167508 0.094488035162 NA 0.792599706984 0.094488035162 0.282051282051 1.3 0.0 NC_045512.2:24288-24326 + 24288 24326 13 NotMaximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24287;39;0&p=30&e=30&w=0&f=24288-24326", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24288-24326&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.6428769231 1.0 1.15384615385 -16.15716 -7.86294615385 -10.7799307693 NA 0.25216343806 0.848933745727 NA 0.890405339411 0.25216343806 0.333333333333 0.0 0.74358974359 NC_045512.2:19549-19617 - 19549 19617 23 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19548;69;0&s=-&p=30&e=30&w=0&f=19549-19617-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19549-19617&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -18.6444086957 1.0 1.63768115942 -11.3846389381 -26.0527173913 7.4083086956 NA 0.452876444734 0.284401758099 NA 0.0174377340062 0.0174377340062 0.36231884058 0.0 0.0 NC_045512.2:25682-25723 + 25682 25723 14 Maximal UUG NearCognate ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25681;42;0&p=30&e=30&w=0&f=25682-25723", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25682-25723&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.6445 1.0 2.19047619048 -8.51161956522 -18.6992285714 0.0547285714286 NA 0.981611590428 0.568845840794 NA 0.473377828423 0.467289597916 0.452380952381 0.0 0.0 NC_045512.2:19175-19300 + 19175 19300 42 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19174;126;0&p=30&e=30&w=0&f=19175-19300", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19175-19300&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.6548880952 1.0 1.42063492063 -13.131373743 -13.1000666667 -5.55482142853 1.0 0.768324922676 0.364759889305 0.0174377340062 1.0 0.0174377340062 0.388888888889 0.221052631579 0.0 NC_045512.2:20656-20697 - 20656 20697 14 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20655;42;0&s=-&p=30&e=30&w=0&f=20656-20697-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20656-20697&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -18.6719214286 1.0 2.11904761905 -8.81146853934 -24.9603857143 6.28846428569 NA 0.887605404525 1.0 NA 0.711277877259 0.623389223506 0.5 0.763636363636 0.0 NC_045512.2:16027-16056 - 16027 16056 10 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16026;30;0&s=-&p=30&e=30&w=0&f=16027-16056-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16027-16056&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -18.67565 1.0 1.66666666667 -11.20539 -32.49855 13.8229 0.753967117044 0.845205925444 1.0 0.698906071952 1.0 0.845205925444 0.366666666667 0.0 0.0 NC_045512.2:720-878 + 720 878 53 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;719;159;0&p=30&e=30&w=0&f=720-878", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:720-878&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.6781264151 1.0 1.49056603774 -12.5308949367 -12.7048245283 -5.9733018868 NA 0.0894774540127 0.544821748331 NA 0.706439850236 0.0174377340062 0.452830188679 0.6138996139 0.238993710692 NC_045512.2:21303-21392 + 21303 21392 30 Maximal ACG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21302;90;0&p=30&e=30&w=0&f=21303-21392", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21303-21392&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.68122 1.0 1.6 -11.6757625 -21.4787833333 2.79756333333 NA 0.847657496337 0.0 NA 0.085388246785 0.0 0.322222222222 0.857142857143 0.0 NC_045512.2:23436-23510 + 23436 23510 25 NotMaximal AUG Canonical S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23435;75;0&p=30&e=30&w=0&f=23436-23510", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23436-23510&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.68556 1.0 2.81333333333 -6.64178672986 -16.817692 -1.867868 0.815204297574 0.460371154159 0.584405013837 0.343053882468 1.0 0.343053882468 0.4 0.669642857143 0.0 NC_045512.2:25335-25445 + 25335 25445 37 NotMaximal AAG NearCognate S,ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25334;111;0&p=30&e=30&w=0&f=25335-25445", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25335-25445&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.7007783784 0.9903 1.64340987936 -11.3792539605 -20.8208351351 2.12005675674 NA 0.809659775354 0.468386781703 NA 1.0 0.383600846492 0.369369369369 0.531100478469 0.423423423423 NC_045512.2:5718-5780 + 5718 5780 21 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5717;63;0&p=30&e=30&w=0&f=5718-5780", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5718-5780&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.7085904762 1.0 1.36507936508 -13.7051302326 -11.5086285714 -7.19996190477 0.390053719681 0.68944489663 1.0 0.094488035162 0.912111346248 0.68944489663 0.365079365079 0.0 0.428571428571 NC_045512.2:27467-27529 - 27467 27529 21 Maximal AUG Canonical ORF7a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27466;63;0&s=-&p=30&e=30&w=0&f=27467-27529-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27467-27529&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -18.7108238095 1.0 1.46031746032 -12.8128467391 -16.7758238095 -1.93499999998 0.706439850236 0.974706169624 0.61680286505 0.591509034674 1.0 0.591509034674 0.412698412698 0.375 0.0 NC_045512.2:19352-19423 - 19352 19423 24 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19351;72;0&s=-&p=30&e=30&w=0&f=19352-19423-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19352-19423&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -18.7188708333 1.0 1.40277777778 -13.3441455445 -21.7125541667 2.99368333337 NA 0.746189158392 0.975972651799 NA 0.907830050464 0.6085398014 0.333333333333 0.0 0.0 NC_045512.2:16223-16276 + 16223 16276 18 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16222;54;0&p=30&e=30&w=0&f=16223-16276", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16223-16276&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.7238944444 1.0 1.12962962963 -16.5752508196 -12.9064888889 -5.81740555551 NA 0.0174377340062 0.0894774540127 NA 0.553267133322 0.0174377340062 0.425925925926 0.0 0.0 NC_045512.2:4674-4832 + 4674 4832 53 Maximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4673;159;0&p=30&e=30&w=0&f=4674-4832", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4674-4832&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.7344698113 1.0 1.61635220126 -11.5905863813 -15.5336716981 -3.20079811319 NA 0.912111346248 0.25216343806 NA 1.0 0.25216343806 0.377358490566 0.186839012926 0.0 NC_045512.2:19002-19037 + 19002 19037 12 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19001;36;0&p=30&e=30&w=0&f=19002-19037", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19002-19037&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.7390166667 1.0 1.30555555556 -14.3532893617 -20.1908833333 1.45186666663 NA 0.343053882468 0.0 NA 0.0174377340062 0.0 0.416666666667 0.666666666667 0.0 NC_045512.2:10221-10397 + 10221 10397 59 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10220;177;0&p=30&e=30&w=0&f=10221-10397", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10221-10397&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.7423949153 1.0 1.22598870056 -15.2875755761 -12.1914491525 -6.55094576276 NA 0.921299039557 0.672046231483 NA 0.75787400293 0.460494872212 0.361581920904 0.345703125 0.0 NC_045512.2:4704-4832 + 4704 4832 43 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4703;129;0&p=30&e=30&w=0&f=4704-4832", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4704-4832&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.7485093023 1.0 1.66666666667 -11.2491055814 -15.4169023256 -3.33160697672 NA 0.912111346248 0.455663356666 NA 0.499042812958 0.0174377340062 0.364341085271 0.247126436782 0.0 NC_045512.2:3830-3925 - 3830 3925 32 Maximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3829;96;0&s=-&p=30&e=30&w=0&f=3830-3925-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3830-3925&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -18.75113125 0.8915 3.55255039596 -5.27821681892 -23.306790625 4.555659375 NA 0.387302620869 0.586478919095 NA 0.254738727006 0.0 0.34375 0.380952380952 0.0 NC_045512.2:21329-21379 - 21329 21379 17 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21328;51;0&s=-&p=30&e=30&w=0&f=21329-21379-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21329-21379&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -18.7520764706 1.0 1.29411764706 -14.4902409091 -13.5717588235 -5.18031764707 NA 0.468611427641 0.094488035162 NA 1.0 0.094488035162 0.313725490196 0.0 0.0 NC_045512.2:27966-27995 - 27966 27995 10 NotMaximal AUC NearCognate ORF8 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27965;30;0&s=-&p=30&e=30&w=0&f=27966-27995-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27966-27995&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -18.75291 0.7056 5.14400061575 -3.64558859939 -9.59854 -9.15437 NA 0.094488035162 0.929988604916 NA 0.094488035162 0.094488035162 0.333333333333 0.0 0.0 NC_045512.2:3302-3343 - 3302 3343 14 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3301;42;0&s=-&p=30&e=30&w=0&f=3302-3343-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3302-3343&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -18.7546857143 0.8011 3.8369586791 -4.88790401013 -12.9197071429 -5.83497857144 NA 0.414628031906 0.397349829074 NA 0.758948396549 0.322738075859 0.380952380952 0.0 0.0 NC_045512.2:10218-10397 + 10218 10397 60 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10217;180;0&p=30&e=30&w=0&f=10218-10397", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10218-10397&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.7592266667 1.0 1.23333333333 -15.2101837838 -11.9934633333 -6.76576333337 NA 0.921299039557 0.672046231483 NA 1.0 0.59334527104 0.361111111111 0.340909090909 0.0 NC_045512.2:16603-16632 - 16603 16632 10 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16602;30;0&s=-&p=30&e=30&w=0&f=16603-16632-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16603-16632&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -18.75983 1.0 1.33333333333 -14.0698725 -17.72688 -1.03295 NA 0.0174377340062 0.890405339411 NA 0.45615497314 0.0174377340062 0.433333333333 0.0 0.0 NC_045512.2:20656-20694 - 20656 20694 13 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20655;39;0&s=-&p=30&e=30&w=0&f=20656-20694-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20656-20694&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -18.7739384615 1.0 2.05128205128 -9.15229499998 -23.6297153846 4.85577692312 NA 0.887605404525 1.0 NA 0.671710890444 0.647204948722 0.538461538462 0.709090909091 0.0 NC_045512.2:1476-1556 + 1476 1556 27 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1475;81;0&p=30&e=30&w=0&f=1476-1556", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1476-1556&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.7931259259 1.0 1.43209876543 -13.1227862069 -8.76484444444 -10.0282814815 NA 0.524489663031 0.986729610939 NA 0.094488035162 0.094488035162 0.481481481481 0.433155080214 0.0987654320988 NC_045512.2:10137-10190 - 10137 10190 18 Maximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10136;54;0&s=-&p=30&e=30&w=0&f=10137-10190-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10137-10190&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -18.7963833333 1.0 1.38888888889 -13.533396 -15.9303555556 -2.86602777774 NA 0.835930327202 0.24482500407 NA 0.923818980954 0.094488035162 0.462962962963 0.692307692308 0.0 NC_045512.2:23801-23848 - 23801 23848 16 Maximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23800;48;0&s=-&p=30&e=30&w=0&f=23801-23848-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23801-23848&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -18.79836875 1.0 2.33333333333 -8.05644375 -27.13335 8.33498125 NA 0.225990558359 0.290844864073 NA 1.0 0.0174377340062 0.354166666667 0.0 0.0 NC_045512.2:6105-6152 + 6105 6152 16 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6104;48;0&p=30&e=30&w=0&f=6105-6152", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6105-6152&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.80245625 0.9813 1.52858602682 -12.3005548396 -16.2311625 -2.57129375 NA 0.981299039557 0.872905746378 NA 0.085388246785 0.0793000162787 0.354166666667 0.0 0.145833333333 NC_045512.2:23307-23354 + 23307 23354 16 NotMaximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23306;48;0&p=30&e=30&w=0&f=23307-23354", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23307-23354&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.8131625 1.0 1.91666666667 -9.81556304348 -22.363825 3.5506625 NA 0.76950024418 0.368347712844 NA 0.706407292854 0.368347712844 0.375 0.0 0.5625 NC_045512.2:13067-13114 - 13067 13114 16 Maximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13066;48;0&s=-&p=30&e=30&w=0&f=13067-13114-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13067-13114&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -18.81421875 1.0 1.91666666667 -9.81611413043 -29.91530625 11.1010875 NA 0.0174377340062 1.0 NA 0.472492267622 0.0174377340062 0.354166666667 0.0 0.0 NC_045512.2:25826-25879 + 25826 25879 18 NotMaximal AUU NearCognate ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25825;54;0&p=30&e=30&w=0&f=25826-25879", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25826-25879&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.8149166667 1.0 1.85185185185 -10.160055 -14.1477777778 -4.66713888892 NA 0.094488035162 1.0 NA 0.480543708286 0.0 0.314814814815 0.75 0.0 NC_045512.2:5958-6086 + 5958 6086 43 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5957;129;0&p=30&e=30&w=0&f=5958-6086", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5958-6086&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.8237837209 0.9843 1.50553606027 -12.5030440769 -13.6209116279 -5.20287209299 NA 0.697821911118 0.705876607521 NA 0.0174377340062 0.0174377340062 0.294573643411 0.732954545455 0.0 NC_045512.2:25669-25716 - 25669 25716 16 NotMaximal AAG NearCognate ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25668;48;0&s=-&p=30&e=30&w=0&f=25669-25716-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25669-25716&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -18.8336625 1.0 2.54166666667 -7.40996557377 -19.19153125 0.35786875 NA 0.698352596451 0.360374409897 NA 0.380953931304 0.0 0.5 0.375 0.0 NC_045512.2:3000-3203 + 3000 3203 68 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2999;204;0&p=30&e=30&w=0&f=3000-3203", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3000-3203&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.8377735294 0.9567 2.47365922411 -7.61534707199 -18.9658617647 0.128088235306 NA 0.094488035162 0.832873188996 NA 0.971076021488 0.085388246785 0.397058823529 0.0 0.0 NC_045512.2:18497-18559 - 18497 18559 21 Maximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18496;63;0&s=-&p=30&e=30&w=0&f=18497-18559-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18497-18559&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -18.8492142857 1.0 1.31746031746 -14.3072349397 -24.8025142857 5.95330000001 NA 0.993381084161 0.0174377340062 NA 0.947901676705 0.0174377340062 0.365079365079 0.5 0.0 NC_045512.2:6973-7029 + 6973 7029 19 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6972;57;0&p=30&e=30&w=0&f=6973-7029", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6973-7029&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.8535578947 1.0 1.89473684211 -9.95048888887 -21.9577105263 3.10415263162 NA 0.764890118834 1.0 NA 0.885437082859 0.559218622823 0.385964912281 0.471074380165 0.0 NC_045512.2:21071-21139 + 21071 21139 23 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21070;69;0&p=30&e=30&w=0&f=21071-21139", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21071-21139&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.8625652174 1.0 1.5652173913 -12.0510833333 -18.2273565217 -0.635208695661 0.880455803353 0.658831189972 0.390053719681 0.094488035162 0.912111346248 0.094488035162 0.304347826087 0.0 0.0 NC_045512.2:2997-3203 + 2997 3203 69 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2996;207;0&p=30&e=30&w=0&f=2997-3203", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:2997-3203&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.8633681159 0.9573 2.45713276192 -7.67698368124 -18.7388028986 -0.124565217349 NA 0.094488035162 0.832873188996 NA 0.845088718867 0.0 0.400966183575 0.0 0.0 NC_045512.2:2247-2309 + 2247 2309 21 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2246;63;0&p=30&e=30&w=0&f=2247-2309", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:2247-2309&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.8644333333 1.0 2.42857142857 -7.76770784312 -10.8412285714 -8.02320476187 NA 0.094488035162 0.390053719681 NA 0.884043626892 0.094488035162 0.396825396825 0.0 0.0 NC_045512.2:12573-12629 + 12573 12629 19 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12572;57;0&p=30&e=30&w=0&f=12573-12629", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12573-12629&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.8646631579 1.0 1.49122807018 -12.6504211765 -15.4122526316 -3.45241052632 0.94439850236 0.26510174182 0.685713820609 0.26510174182 1.0 0.26510174182 0.280701754386 0.0 0.0 NC_045512.2:10506-10607 - 10506 10607 34 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10505;102;0&s=-&p=30&e=30&w=0&f=10506-10607-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10506-10607&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -18.8688323529 1.0 1.27450980392 -14.8047761538 -12.9109647059 -5.95786764702 NA 1.0 0.87861305551 NA 1.0 0.87861305551 0.382352941176 0.0 0.0196078431373 NC_045512.2:20609-20653 - 20609 20653 15 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20608;45;0&s=-&p=30&e=30&w=0&f=20609-20653-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20609-20653&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -18.8770133333 1.0 1.28888888889 -14.6459586207 -17.7247 -1.1523133333 NA 1.0 0.980224645938 NA 0.869301644148 0.849526290086 0.355555555556 0.0 0.0 NC_045512.2:24728-24811 - 24728 24811 28 Maximal AUG Canonical S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24727;84;0&s=-&p=30&e=30&w=0&f=24728-24811-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24728-24811&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -18.8780071429 1.0 2.0 -9.43900357145 -27.7054 8.8273928571 0.875533127137 0.25216343806 0.443317597265 0.0174377340062 1.0 0.0174377340062 0.452380952381 0.0 0.107142857143 NC_045512.2:22970-23023 - 22970 23023 18 NotMaximal AUU NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22969;54;0&s=-&p=30&e=30&w=0&f=22970-23023-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22970-23023&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -18.8823555556 0.7708 5.56605347042 -3.39241361154 -17.7224777778 -1.15987777782 NA 0.411456942862 0.394094090835 NA 0.695627543545 0.220345108253 0.407407407407 0.461538461538 0.0 NC_045512.2:5970-6086 + 5970 6086 39 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5969;117;0&p=30&e=30&w=0&f=5970-6086", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5970-6086&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.8828282051 0.9826 1.53174488696 -12.3276587151 -13.6504435897 -5.23238461536 NA 0.697821911118 0.705876607521 NA 1.0 0.368347712844 0.316239316239 0.709090909091 0.0 NC_045512.2:5964-6086 + 5964 6086 41 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5963;123;0&p=30&e=30&w=0&f=5964-6086", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5964-6086&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.8877439024 0.9835 1.53019635589 -12.3433465448 -13.8521829268 -5.03556097557 NA 0.697821911118 0.705876607521 NA 0.775910792772 0.094488035162 0.308943089431 0.698863636364 0.0 NC_045512.2:19268-19327 - 19268 19327 20 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19267;60;0&s=-&p=30&e=30&w=0&f=19268-19327-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19268-19327&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -18.889805 1.0 1.46666666667 -12.8794125 -20.15464 1.264835 NA 0.364759889305 0.768324922676 NA 0.82780074882 0.0174377340062 0.433333333333 0.0 0.0 NC_045512.2:1320-1397 + 1320 1397 26 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1319;78;0&p=30&e=30&w=0&f=1320-1397", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1320-1397&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.8924884615 1.0 1.78205128205 -10.6015402877 -17.8473961538 -1.04509230765 NA 0.59783818981 0.469790004884 NA 0.994966628683 0.364759889305 0.384615384615 0.0 0.346153846154 NC_045512.2:17771-17806 - 17771 17806 12 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17770;36;0&s=-&p=30&e=30&w=0&f=17771-17806-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17771-17806&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -18.903275 1.0 1.16666666667 -16.2028071429 -14.2958 -4.607475 NA 1.0 0.869939768843 NA 0.734624776168 0.734624776168 0.361111111111 0.0 0.0 NC_045512.2:20960-20989 + 20960 20989 10 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20959;30;0&p=30&e=30&w=0&f=20960-20989", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20960-20989&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.91217 1.0 1.16666666667 -16.2104314286 -18.28527 -0.6269 0.979967442618 1.0 1.0 0.979967442618 1.0 1.0 0.366666666667 0.0 0.0 NC_045512.2:13197-13238 - 13197 13238 14 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13196;42;0&s=-&p=30&e=30&w=0&f=13197-13238-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13197-13238&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -18.9137214286 1.0 0.880952380952 -21.4696297298 -14.7673357143 -4.14638571431 0.0174377340062 0.364759889305 0.937336806121 0.0174377340062 1.0 0.364759889305 0.47619047619 0.424242424242 0.380952380952 NC_045512.2:18992-19021 - 18992 19021 10 Maximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18991;30;0&s=-&p=30&e=30&w=0&f=18992-19021-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18992-19021&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -18.91704 1.0 1.36666666667 -13.8417365854 -17.36098 -1.55606 NA 0.424678495849 0.99225459873 NA 0.890405339411 0.416933094579 0.4 0.0 0.0 NC_045512.2:3930-4100 + 3930 4100 57 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3929;171;0&p=30&e=30&w=0&f=3930-4100", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3930-4100&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.9255245614 0.9868 2.22952170707 -8.48860295972 -14.5994947368 -4.32602982456 NA 0.424678495849 0.0174377340062 NA 0.405013836888 0.0174377340062 0.33918128655 0.0 0.0 NC_045512.2:26618-26650 + 26618 26650 11 NotMaximal UUG NearCognate M =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26617;33;0&p=30&e=30&w=0&f=26618-26650", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26618-26650&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.9263181818 1.0 1.45454545455 -13.01184375 -21.5537090909 2.62739090911 NA 0.301699495361 0.637405176624 NA 0.390053719681 0.094488035162 0.393939393939 0.0 0.0 NC_045512.2:5961-6086 + 5961 6086 42 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5960;126;0&p=30&e=30&w=0&f=5961-6086", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5961-6086&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.9318619048 0.9839 1.51757263313 -12.4750944314 -13.7873071429 -5.14455476194 NA 0.697821911118 0.705876607521 NA 0.916623799447 0.368347712844 0.301587301587 0.715909090909 0.0 NC_045512.2:25669-25704 - 25669 25704 12 NotMaximal AGG NearCognate ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25668;36;0&s=-&p=30&e=30&w=0&f=25669-25704-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25669-25704&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -18.9401 1.0 2.80555555556 -6.75092673267 -19.3466166667 0.406516666667 NA 0.698352596451 0.360374409897 NA 0.856011720658 0.332069021651 0.583333333333 0.346153846154 0.0 NC_045512.2:7785-7835 + 7785 7835 17 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7784;51;0&p=30&e=30&w=0&f=7785-7835", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7785-7835&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.9419588235 1.0 1.41176470588 -13.4172208333 -13.7541705882 -5.18778823526 NA 0.855441966466 0.890405339411 NA 1.0 0.649770470454 0.333333333333 0.0 0.0 NC_045512.2:7374-7466 + 7374 7466 31 Maximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7373;93;0&p=30&e=30&w=0&f=7374-7466", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7374-7466&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.9481290323 1.0 1.32258064516 -14.3266341464 -12.2479870968 -6.70014193553 NA 0.094488035162 0.706439850236 NA 0.477942373433 0.094488035162 0.344086021505 0.369047619048 0.0 NC_045512.2:8865-8972 + 8865 8972 36 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8864;108;0&p=30&e=30&w=0&f=8865-8972", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8865-8972&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.9550666667 1.0 1.38888888889 -13.647648 -13.838625 -5.1164416667 NA 0.582220413479 0.258619566987 NA 0.974706169624 0.0174377340062 0.388888888889 0.494279176201 0.0 NC_045512.2:25669-25719 - 25669 25719 17 Maximal AUA NearCognate ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25668;51;0&s=-&p=30&e=30&w=0&f=25669-25719-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25669-25719&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -18.9594647059 1.0 2.47058823529 -7.67406904763 -19.3245 0.3650352941 NA 0.698352596451 0.360374409897 NA 0.881305551034 0.332069021651 0.470588235294 0.3984375 0.0 NC_045512.2:3639-3749 + 3639 3749 37 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3638;111;0&p=30&e=30&w=0&f=3639-3749", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3639-3749&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.9613567568 1.0 2.0 -9.4806783784 -14.2917351351 -4.66962162166 NA 0.7689825818 0.687813771773 NA 0.706439850236 0.466742633892 0.351351351351 0.293650793651 0.0 NC_045512.2:3996-4100 + 3996 4100 35 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3995;105;0&p=30&e=30&w=0&f=3996-4100", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3996-4100&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.9626685714 0.9975 2.01594763443 -9.40632993017 -15.0799 -3.8827685714 NA 0.424678495849 0.520195344294 NA 1.0 0.094488035162 0.342857142857 0.0 0.0 NC_045512.2:8815-8895 + 8815 8895 27 Maximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8814;81;0&p=30&e=30&w=0&f=8815-8895", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8815-8895&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.9675481481 1.0 1.72839506173 -10.9740814285 -22.9297111111 3.96216296301 NA 0.47565684519 0.612918769331 NA 1.0 0.094488035162 0.481481481481 0.642857142857 0.0 NC_045512.2:8322-8372 + 8322 8372 17 Maximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8321;51;0&p=30&e=30&w=0&f=8322-8372", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8322-8372&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.9712294118 1.0 1.27450980392 -14.8851184616 -9.04341764706 -9.92781176474 NA 0.675650333713 0.837493081556 NA 0.0174377340062 0.0174377340062 0.490196078431 1.0625 0.0 NC_045512.2:25158-25190 + 25158 25190 11 NotMaximal AUC NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25157;33;0&p=30&e=30&w=0&f=25158-25190", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25158-25190&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.9716727273 1.0 1.39393939394 -13.6101130435 -15.1225636364 -3.84910909094 NA 0.271762982256 0.706439850236 NA 0.314478267947 0.0174377340062 0.363636363636 0.0 0.424242424242 NC_045512.2:3615-3749 + 3615 3749 45 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3614;135;0&p=30&e=30&w=0&f=3615-3749", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3615-3749&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.9739155556 1.0 1.85185185185 -10.2459144 -14.0520444444 -4.92187111116 NA 0.7689825818 0.094488035162 NA 0.972840631613 0.094488035162 0.362962962963 0.451505016722 0.0 NC_045512.2:19481-19537 + 19481 19537 19 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19480;57;0&p=30&e=30&w=0&f=19481-19537", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19481-19537&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.9754157895 1.0 1.43859649123 -13.1902280488 -8.2501 -10.7253157895 NA 0.987637961908 0.384258505616 NA 0.959570242552 0.384258505616 0.385964912281 0.475 0.0 NC_045512.2:11628-11681 + 11628 11681 18 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;11627;54;0&p=30&e=30&w=0&f=11628-11681", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:11628-11681&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.9754388889 1.0 1.22222222222 -15.5253590909 -13.0312777778 -5.94416111112 NA 0.343053882468 1.0 NA 1.0 0.343053882468 0.351851851852 0.642857142857 0.0 NC_045512.2:5976-6086 + 5976 6086 37 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5975;111;0&p=30&e=30&w=0&f=5976-6086", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5976-6086&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.9755864865 0.9817 1.55147884482 -12.2306446845 -14.0654 -4.9101864865 NA 0.697821911118 0.705876607521 NA 0.987637961908 0.368347712844 0.315315315315 0.755102040816 0.0 NC_045512.2:1815-1847 - 1815 1847 11 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1814;33;0&s=-&p=30&e=30&w=0&f=1815-1847-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1815-1847&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -18.9782363636 1.0 2.30303030303 -8.24054999998 -23.3962272727 4.41799090913 NA 0.424593846655 0.681933908514 NA 0.867022627381 0.24062835748 0.363636363636 0.0 0.0 NC_045512.2:24728-24799 - 24728 24799 24 NotMaximal AGG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24727;72;0&s=-&p=30&e=30&w=0&f=24728-24799-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24728-24799&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -18.986725 1.0 2.09722222222 -9.05327284768 -28.77325 9.786525 NA 0.25216343806 0.443317597265 NA 0.473377828423 0.0174377340062 0.458333333333 0.0 0.0 NC_045512.2:7425-7466 + 7425 7466 14 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7424;42;0&p=30&e=30&w=0&f=7425-7466", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7425-7466&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -18.9966428571 1.0 1.33333333333 -14.2474821428 -10.6982571429 -8.29838571424 NA 0.094488035162 1.0 NA 0.975103369689 0.094488035162 0.285714285714 0.0 0.0 NC_045512.2:27925-27966 - 27925 27966 14 NotMaximal AUG Canonical ORF8 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27924;42;0&s=-&p=30&e=30&w=0&f=27925-27966-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27925-27966&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -19.0077642857 0.6838 5.38996673164 -3.52650864691 -15.9561571429 -3.05160714284 0.094488035162 0.094488035162 1.0 0.094488035162 0.362243203646 0.094488035162 0.380952380952 0.0 0.119047619048 NC_045512.2:21329-21367 - 21329 21367 13 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21328;39;0&s=-&p=30&e=30&w=0&f=21329-21367-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21329-21367&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -19.0198153846 1.0 1.35897435897 -13.9957132075 -12.5045615385 -6.51525384614 NA 0.468611427641 0.094488035162 NA 0.299791632753 0.094488035162 0.307692307692 0.0 0.0 NC_045512.2:4725-4832 + 4725 4832 36 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4724;108;0&p=30&e=30&w=0&f=4725-4832", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4725-4832&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.0220694444 1.0 1.73148148148 -10.9860080214 -16.8252638889 -2.19680555551 0.912111346248 0.912111346248 0.455663356666 0.455663356666 1.0 0.455663356666 0.351851851852 0.0 0.0 NC_045512.2:20996-21139 + 20996 21139 48 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20995;144;0&p=30&e=30&w=0&f=20996-21139", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20996-21139&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.0308333333 1.0 1.45833333333 -13.0497142857 -14.9549375 -4.0758958333 NA 0.658831189972 0.390053719681 NA 0.0894774540127 0.0894774540127 0.326388888889 0.263736263736 0.0 NC_045512.2:4722-4832 + 4722 4832 37 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4721;111;0&p=30&e=30&w=0&f=4722-4832", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4722-4832&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.0333459459 1.0 1.71171171171 -11.1194810526 -16.5662513514 -2.46709459455 NA 0.912111346248 0.455663356666 NA 0.870672309946 0.455663356666 0.342342342342 0.0 0.0 NC_045512.2:8004-8099 + 8004 8099 32 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8003;96;0&p=30&e=30&w=0&f=8004-8099", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8004-8099&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.035475 1.0 1.46875 -12.9603234043 -17.460096875 -1.575378125 NA 0.292749470943 0.643773400619 NA 0.890405339411 0.283649682566 0.34375 1.42222222222 0.0 NC_045512.2:21475-21543 - 21475 21543 23 Maximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21474;69;0&s=-&p=30&e=30&w=0&f=21475-21543-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21475-21543&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -19.0357608696 1.0 1.88405797101 -10.1035961539 -29.0530086957 10.0172478261 NA 0.0174377340062 0.298639101416 NA 0.612563893863 0.0174377340062 0.289855072464 0.0 0.0 NC_045512.2:3978-4100 + 3978 4100 41 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3977;123;0&p=30&e=30&w=0&f=3978-4100", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3978-4100&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.0405804878 0.9979 1.98109350907 -9.61114677357 -14.7264609756 -4.31411951219 NA 0.424678495849 0.494901513918 NA 0.706439850236 0.0174377340062 0.349593495935 0.0 0.0 NC_045512.2:23442-23510 + 23442 23510 23 NotMaximal AUC NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23441;69;0&p=30&e=30&w=0&f=23442-23510", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23442-23510&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.0481521739 1.0 2.85507246377 -6.67168781725 -17.4875521739 -1.56059999999 NA 0.460371154159 0.584405013837 NA 0.659863258994 0.333954094091 0.391304347826 0.766666666667 0.0 NC_045512.2:24026-24073 - 24026 24073 16 NotMaximal AUA NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24025;48;0&s=-&p=30&e=30&w=0&f=24026-24073-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24026-24073&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -19.05178125 1.0 1.79166666667 -10.6335523256 -27.66388125 8.6121 NA 0.454432687612 0.890405339411 NA 0.89678333062 0.403581312063 0.375 0.0 0.0 NC_045512.2:4998-5033 - 4998 5033 12 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4997;36;0&s=-&p=30&e=30&w=0&f=4998-5033-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4998-5033&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -19.05305 1.0 1.33333333333 -14.2897875 -13.6841916667 -5.36885833333 0.64881653915 0.97632101579 0.292147159368 0.292147159368 1.0 0.292147159368 0.472222222222 0.514285714286 0.0 NC_045512.2:8340-8372 + 8340 8372 11 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8339;33;0&p=30&e=30&w=0&f=8340-8372", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8340-8372&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.0639181818 1.0 1.33333333333 -14.2979386363 -9.52968181818 -9.53423636362 NA 0.675650333713 0.949887677031 NA 0.978368875142 0.603906885886 0.484848484848 1.65 0.0 NC_045512.2:18428-18520 + 18428 18520 31 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18427;93;0&p=30&e=30&w=0&f=18428-18520", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18428-18520&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.0833677419 1.0 1.38709677419 -13.7577767442 -12.3829096774 -6.70045806448 NA 0.817349829074 0.699820934397 NA 0.636027999349 0.364134787563 0.397849462366 0.281818181818 0.0 NC_045512.2:1317-1397 + 1317 1397 27 Maximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1316;81;0&p=30&e=30&w=0&f=1317-1397", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1317-1397&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.0896851852 1.0 1.85185185185 -10.30843 -17.6319333333 -1.45775185187 NA 0.59783818981 0.264118508872 NA 0.86981605079 0.0174377340062 0.382716049383 0.0 0.333333333333 NC_045512.2:5489-5551 - 5489 5551 21 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5488;63;0&s=-&p=30&e=30&w=0&f=5489-5551-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5489-5551&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -19.0965285714 1.0 1.93650793651 -9.86132213113 -25.4719761905 6.37544761908 NA 0.724479895816 0.43524987791 NA 0.472931792284 0.363337131695 0.428571428571 0.35 0.0 NC_045512.2:1506-1556 + 1506 1556 17 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1505;51;0&p=30&e=30&w=0&f=1506-1556", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1506-1556&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.1049882353 1.0 1.39215686275 -13.7233014085 -6.62520588235 -12.4797823529 NA 0.524489663031 0.986729610939 NA 0.894917792609 0.524489663031 0.490196078431 0.653846153846 0.0 NC_045512.2:20993-21139 + 20993 21139 49 Maximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20992;147;0&p=30&e=30&w=0&f=20993-21139", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20993-21139&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.1059326531 1.0 1.43537414966 -13.3107682465 -14.6400428571 -4.46588979596 NA 0.658831189972 0.094488035162 NA 0.706439850236 0.094488035162 0.326530612245 0.259259259259 0.0 NC_045512.2:7923-7979 + 7923 7979 19 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7922;57;0&p=30&e=30&w=0&f=7923-7979", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7923-7979&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.1076947368 1.0 1.70175438596 -11.2282329897 -19.0456842105 -0.0620105262737 NA 0.608637473547 0.526615660101 NA 0.947094253622 0.315077323783 0.40350877193 0.452380952381 0.0 NC_045512.2:1482-1556 + 1482 1556 25 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1481;75;0&p=30&e=30&w=0&f=1482-1556", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1482-1556&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.112576 1.0 1.38666666667 -13.7831076923 -8.005272 -11.107304 NA 0.524489663031 0.986729610939 NA 0.903291551359 0.522135764285 0.48 0.47619047619 0.0266666666667 NC_045512.2:18425-18520 + 18425 18520 32 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18424;96;0&p=30&e=30&w=0&f=18425-18520", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18425-18520&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.11511875 1.0 1.40625 -13.5929733333 -12.608871875 -6.506246875 NA 0.817349829074 0.699820934397 NA 0.62537847957 0.46818818167 0.385416666667 0.290909090909 0.0 NC_045512.2:3636-3749 + 3636 3749 38 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3635;114;0&p=30&e=30&w=0&f=3636-3749", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3636-3749&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.1192763158 1.0 2.0 -9.5596381579 -13.9503421053 -5.16893421054 NA 0.7689825818 0.687813771773 NA 0.319791632753 0.284424548266 0.350877192982 0.285714285714 0.0 NC_045512.2:25669-25713 - 25669 25713 15 NotMaximal AUA NearCognate ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25668;45;0&s=-&p=30&e=30&w=0&f=25669-25713-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25669-25713&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -19.12562 1.0 2.55555555556 -7.48393826087 -20.65872 1.5331 NA 0.698352596451 0.360374409897 NA 0.44354875468 0.0 0.511111111111 0.375 0.0 NC_045512.2:8010-8099 + 8010 8099 30 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8009;90;0&p=30&e=30&w=0&f=8010-8099", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8010-8099&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.12606 1.0 1.5 -12.7507066667 -18.7913666667 -0.334693333333 NA 0.292749470943 0.643773400619 NA 0.974706169624 0.258355852189 0.333333333333 1.6 0.0 NC_045512.2:16027-16059 - 16027 16059 11 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16026;33;0&s=-&p=30&e=30&w=0&f=16027-16059-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16027-16059&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -19.1291909091 1.0 1.57575757576 -12.1396788462 -31.6832636364 12.5540727273 NA 0.845205925444 1.0 NA 0.917548429106 0.845205925444 0.393939393939 0.0 0.0 NC_045512.2:1353-1397 + 1353 1397 15 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1352;45;0&p=30&e=30&w=0&f=1353-1397", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1353-1397&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.1292533333 1.0 2.08888888889 -9.15762127658 -18.5937533333 -0.535499999967 1.0 0.59783818981 0.469790004884 0.364759889305 1.0 0.364759889305 0.333333333333 0.0 0.177777777778 NC_045512.2:11022-11063 - 11022 11063 14 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;11021;42;0&s=-&p=30&e=30&w=0&f=11022-11063-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:11022-11063&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -19.1316285714 1.0 1.40476190476 -13.6191254237 -16.5018357143 -2.62979285711 NA 0.498420966954 0.890405339411 NA 0.094488035162 0.094488035162 0.309523809524 0.0 0.0 NC_045512.2:711-878 + 711 878 56 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;710;168;0&p=30&e=30&w=0&f=711-878", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:711-878&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.1318696429 1.0 1.5 -12.7545797619 -12.5320875 -6.5997821429 NA 0.0894774540127 0.52916815888 NA 0.881894839655 0.0174377340062 0.458333333333 0.566801619433 0.279761904762 NC_045512.2:12600-12629 + 12600 12629 10 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12599;30;0&p=30&e=30&w=0&f=12600-12629", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12600-12629&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.13571 1.0 1.4 -13.6683642857 -16.42588 -2.70983 NA 0.26510174182 0.979273970373 NA 1.0 0.26510174182 0.3 0.0 0.0 NC_045512.2:8901-8972 + 8901 8972 24 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8900;72;0&p=30&e=30&w=0&f=8901-8972", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8901-8972&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.1384916667 1.0 1.13888888889 -16.8045292683 -14.5248541667 -4.61363750003 NA 0.582220413479 0.657278202832 NA 0.979550708123 0.263366433339 0.347222222222 0.0 0.0 NC_045512.2:6954-7013 - 6954 7013 20 Maximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6953;60;0&s=-&p=30&e=30&w=0&f=6954-7013-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6954-7013&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -19.145275 1.0 1.6 -11.965796875 -14.886285 -4.25899 NA 0.0174377340062 0.620664170601 NA 0.953413641543 0.0 0.333333333333 0.606060606061 0.0 NC_045512.2:8007-8099 + 8007 8099 31 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8006;93;0&p=30&e=30&w=0&f=8007-8099", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8007-8099&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.1515387097 1.0 1.50537634409 -12.7220935714 -18.0439677419 -1.10757096776 NA 0.292749470943 0.643773400619 NA 0.699169786749 0.283649682566 0.344086021505 1.45882352941 0.0 NC_045512.2:3594-3749 + 3594 3749 52 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3593;156;0&p=30&e=30&w=0&f=3594-3749", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3594-3749&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.1549942308 1.0 1.80769230769 -10.5963797873 -13.5355269231 -5.61946730772 NA 0.7689825818 0.094488035162 NA 0.632775516848 0.094488035162 0.365384615385 0.387096774194 0.0 NC_045512.2:16603-16683 - 16603 16683 27 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16602;81;0&s=-&p=30&e=30&w=0&f=16603-16683-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16603-16683&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -19.1550111111 1.0 1.17283950617 -16.3321673684 -17.6974407407 -1.45757037036 NA 0.0174377340062 0.0174377340062 NA 0.987712843887 0.0174377340062 0.407407407407 0.3 0.0 NC_045512.2:2564-2827 - 2564 2827 88 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2563;264;0&s=-&p=30&e=30&w=0&f=2564-2827-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:2564-2827&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -19.1651068182 1.0 2.19318181818 -8.73849430053 -25.6372181818 6.47211136362 NA 0.25216343806 0.094488035162 NA 0.87391828097 0.085388246785 0.393939393939 0.295632698768 0.0 NC_045512.2:1904-1933 - 1904 1933 10 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1903;30;0&s=-&p=30&e=30&w=0&f=1904-1933-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1904-1933&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -19.17132 1.0 2.2 -8.71423636364 -30.49948 11.32816 NA 0.84327201693 0.772677844701 NA 0.702099951164 0.545472895979 0.433333333333 1.0 0.0 NC_045512.2:8790-8822 + 8790 8822 11 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8789;33;0&p=30&e=30&w=0&f=8790-8822", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8790-8822&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.1751727273 1.0 1.93939393939 -9.88719843751 -16.8474909091 -2.32768181821 NA 0.548302132509 0.996933094579 NA 0.851583916653 0.545235227088 0.393939393939 0.0 0.0 NC_045512.2:25217-25264 - 25217 25264 16 NotMaximal AAG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25216;48;0&s=-&p=30&e=30&w=0&f=25217-25264-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25217-25264&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -19.17519375 1.0 2.52083333333 -7.60668842975 -36.57178125 17.3965875 NA 0.0174377340062 0.728647240762 NA 0.912111346248 0.0174377340062 0.375 0.0 0.125 NC_045512.2:8364-8396 - 8364 8396 11 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8363;33;0&s=-&p=30&e=30&w=0&f=8364-8396-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8364-8396&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -19.1762909091 1.0 1.48484848485 -12.914644898 -18.8406090909 -0.335681818191 NA 0.949887677031 1.0 NA 0.570421618102 0.544701286017 0.424242424242 0.673469387755 0.0 NC_045512.2:23520-23621 + 23520 23621 34 Maximal CUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23519;102;0&p=30&e=30&w=0&f=23520-23621", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23520-23621&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.1783058824 0.8946 2.05775386166 -9.32001938605 -15.8629529412 -3.31535294122 NA 0.322445059417 0.912111346248 NA 0.878118183298 0.322445059417 0.470588235294 0.708333333333 0.529411764706 NC_045512.2:9783-9860 - 9783 9860 26 Maximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9782;78;0&s=-&p=30&e=30&w=0&f=9783-9860-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9783-9860&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -19.1807307692 1.0 1.42307692308 -13.4783513513 -21.2663076923 2.08557692311 NA 1.0 0.390053719681 NA 0.237340061859 0.0 0.358974358974 0.866666666667 0.0 NC_045512.2:8874-8972 + 8874 8972 33 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8873;99;0&p=30&e=30&w=0&f=8874-8972", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8874-8972&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.2009969697 1.0 1.34343434343 -14.2924714286 -13.4660272727 -5.73496969697 NA 0.582220413479 0.258619566987 NA 0.832462965978 0.0174377340062 0.373737373737 0.589285714286 0.0 NC_045512.2:5133-5213 + 5133 5213 27 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5132;81;0&p=30&e=30&w=0&f=5133-5213", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5133-5213&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.2120777778 1.0 1.3950617284 -13.7714893805 -14.5143259259 -4.69775185187 0.094488035162 1.0 0.706439850236 0.094488035162 0.99225459873 0.698694448966 0.432098765432 0.264705882353 0.0 NC_045512.2:25688-25723 + 25688 25723 12 NotMaximal CUG NearCognate ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25687;36;0&p=30&e=30&w=0&f=25688-25723", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25688-25723&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.2194416667 1.0 2.36111111111 -8.13999882354 -20.412175 1.1927333333 NA 0.981611590428 0.884317108904 NA 0.818346084975 0.588197948885 0.444444444444 0.0 0.0 NC_045512.2:3681-3713 - 3681 3713 11 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3680;33;0&s=-&p=30&e=30&w=0&f=3681-3713-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3681-3713&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -19.2200545455 1.0 2.21212121212 -8.68851780824 -36.2933272727 17.0732727272 NA 0.890405339411 1.0 NA 0.293185739867 0.293185739867 0.363636363636 1.03125 0.0 NC_045512.2:4374-4427 + 4374 4427 18 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4373;54;0&p=30&e=30&w=0&f=4374-4427", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4374-4427&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.2208777778 1.0 1.62962962963 -11.7946295455 -17.8127777778 -1.40810000002 NA 0.706439850236 0.49007325411 NA 0.655910792772 0.094488035162 0.407407407407 0.9 0.0 NC_045512.2:18896-18931 + 18896 18931 12 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18895;36;0&p=30&e=30&w=0&f=18896-18931", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18896-18931&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.2213833333 1.0 1.16666666667 -16.4754714285 -9.30913333333 -9.91224999997 NA 0.0174377340062 0.706439850236 NA 0.997883770145 0.0174377340062 0.361111111111 0.9 0.388888888889 NC_045512.2:8460-8489 + 8460 8489 10 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8459;30;0&p=30&e=30&w=0&f=8460-8489", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8460-8489&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.22764 1.0 1.33333333333 -14.42073 -16.88652 -2.34112 NA 0.755041510663 1.0 NA 0.960397200065 0.752306690542 0.266666666667 0.0 0.0 NC_045512.2:20861-20905 - 20861 20905 15 Maximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20860;45;0&s=-&p=30&e=30&w=0&f=20861-20905-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20861-20905&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -19.22954 1.0 1.66666666667 -11.537724 -23.2004266667 3.97088666667 NA 0.99225459873 1.0 NA 0.674087579359 0.646163112486 0.444444444444 0.0 0.0 NC_045512.2:2564-2803 - 2564 2803 80 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2563;240;0&s=-&p=30&e=30&w=0&f=2564-2803-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:2564-2803&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -19.22978875 1.0 2.23333333333 -8.61035317164 -26.48514125 7.2553525 NA 0.25216343806 0.094488035162 NA 0.970971837864 0.085388246785 0.408333333333 0.301003344482 0.0 NC_045512.2:2564-2824 - 2564 2824 87 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2563;261;0&s=-&p=30&e=30&w=0&f=2564-2824-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:2564-2824&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -19.2500586207 1.0 2.2030651341 -8.73785269566 -25.7320034483 6.48194482758 NA 0.25216343806 0.094488035162 NA 0.890405339411 0.094488035162 0.39846743295 0.292273236282 0.0 NC_045512.2:3298-3333 + 3298 3333 12 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3297;36;0&p=30&e=30&w=0&f=3298-3333", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3298-3333&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.25575 0.7188 4.12876566549 -4.66380307338 -15.8275333333 -3.42821666667 NA 0.094488035162 0.0174377340062 NA 0.475191274622 0.0 0.361111111111 0.0 0.0 NC_045512.2:11979-12083 - 11979 12083 35 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;11978;105;0&s=-&p=30&e=30&w=0&f=11979-12083-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:11979-12083&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -19.2758257143 1.0 1.22857142857 -15.6896255814 -20.7307028571 1.45487714284 NA 0.530216506593 0.0174377340062 NA 0.276405664985 0.0174377340062 0.409523809524 0.0 0.0 NC_045512.2:29007-29081 + 29007 29081 25 NotMaximal CUG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29006;75;0&p=30&e=30&w=0&f=29007-29081", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29007-29081&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.28688 1.0 1.42666666667 -13.5188411215 -14.625524 -4.661356 NA 0.0174377340062 1.0 NA 0.99225459873 0.0174377340062 0.453333333333 0.526315789474 0.0 NC_045512.2:25338-25445 + 25338 25445 36 NotMaximal ACG NearCognate S,ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25337;108;0&p=30&e=30&w=0&f=25338-25445", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25338-25445&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.2940833333 0.99 1.65202311675 -11.679063772 -21.3666777778 2.07259444448 NA 0.809659775354 0.468386781703 NA 0.706439850236 0.383600846492 0.37037037037 0.541353383459 0.407407407407 NC_045512.2:25487-25519 - 25487 25519 11 NotMaximal AAG NearCognate ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25486;33;0&s=-&p=30&e=30&w=0&f=25487-25519-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25487-25519&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -19.2945454545 1.0 1.30303030303 -14.8074418604 -12.8247545455 -6.46979090905 NA 1.0 0.890405339411 NA 1.0 0.890405339411 0.515151515152 1.26923076923 0.909090909091 NC_045512.2:24396-24437 + 24396 24437 14 NotMaximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24395;42;0&p=30&e=30&w=0&f=24396-24437", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24396-24437&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.3015571429 1.0 1.47619047619 -13.0752483871 -10.2302714286 -9.07128571433 NA 0.854488035162 0.616242878073 NA 0.428383525965 0.094488035162 0.380952380952 0.0 0.547619047619 NC_045512.2:18956-19003 + 18956 19003 16 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18955;48;0&p=30&e=30&w=0&f=18956-19003", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18956-19003&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.30996875 1.0 1.39583333333 -13.8340074627 -17.12218125 -2.1877875 0.695588474687 0.225990558359 0.424678495849 0.225990558359 1.0 0.225990558359 0.395833333333 0.571428571429 0.0 NC_045512.2:10958-11005 - 10958 11005 16 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10957;48;0&s=-&p=30&e=30&w=0&f=10958-11005-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10958-11005&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -19.3122 1.0 1.47916666667 -13.0561352113 -21.0934375 1.7812375 NA 0.368347712844 1.0 NA 1.0 0.368347712844 0.416666666667 0.0 0.0 NC_045512.2:6797-6826 - 6797 6826 10 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6796;30;0&s=-&p=30&e=30&w=0&f=6797-6826-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6797-6826&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -19.33478 1.0 1.86666666667 -10.3579178571 -29.28116 9.94638 NA 0.094488035162 0.706439850236 NA 0.777359596288 0.0883998046557 0.266666666667 0.0 0.0 NC_045512.2:12792-12836 + 12792 12836 15 Maximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12791;45;0&p=30&e=30&w=0&f=12792-12836", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12792-12836&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.3421666667 1.0 1.44444444444 -13.3907307693 -12.0906266667 -7.25154000003 NA 0.0174377340062 0.771232296923 NA 0.984346410549 0.0174377340062 0.422222222222 0.576923076923 0.0222222222222 NC_045512.2:21002-21139 + 21002 21139 46 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21001;138;0&p=30&e=30&w=0&f=21002-21139", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21002-21139&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.3429891304 1.0 1.47101449275 -13.1494211822 -15.1733217391 -4.16966739127 NA 0.658831189972 0.390053719681 NA 0.912111346248 0.094488035162 0.326086956522 0.27380952381 0.0 NC_045512.2:1904-1936 - 1904 1936 11 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1903;33;0&s=-&p=30&e=30&w=0&f=1904-1936-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1904-1936&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -19.3477818182 1.0 2.27272727273 -8.51302400001 -32.7651545455 13.4173727273 NA 0.84327201693 0.772677844701 NA 0.993911769494 0.677629822562 0.393939393939 1.1 0.0 NC_045512.2:3963-4100 + 3963 4100 46 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3962;138;0&p=30&e=30&w=0&f=3963-4100", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3963-4100&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.3524565217 0.9981 2.01938044649 -9.58336333075 -14.1646326087 -5.187823913 NA 0.424678495849 0.494901513918 NA 0.706439850236 0.0174377340062 0.355072463768 0.0 0.0 NC_045512.2:24789-24878 - 24789 24878 30 NotMaximal GUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24788;90;0&s=-&p=30&e=30&w=0&f=24789-24878-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24789-24878&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -19.3553433333 1.0 1.58888888889 -12.1816846154 -18.7955733333 -0.559769999967 NA 1.0 0.085388246785 NA 0.863340387433 0.085388246785 0.444444444444 0.227272727273 0.844444444444 NC_045512.2:21475-21537 - 21475 21537 21 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21474;63;0&s=-&p=30&e=30&w=0&f=21475-21537-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21475-21537&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -19.3655 1.0 1.7619047619 -10.9912297297 -29.293247619 9.92774761905 NA 0.0174377340062 0.351544847794 NA 0.954976395898 0.0174377340062 0.285714285714 0.0 0.0 NC_045512.2:20412-20444 + 20412 20444 11 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20411;33;0&p=30&e=30&w=0&f=20412-20444", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20412-20444&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.3728545455 1.0 1.36363636364 -14.20676 -22.6340909091 3.26123636359 NA 0.0174377340062 0.367367735634 NA 0.577805632427 0.0174377340062 0.30303030303 0.0 0.0 NC_045512.2:25817-25879 + 25817 25879 21 NotMaximal AUG Canonical ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25816;63;0&p=30&e=30&w=0&f=25817-25879", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25817-25879&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.3742238095 1.0 1.8253968254 -10.6137052174 -15.1165809524 -4.25764285712 0.910118834446 0.094488035162 1.0 0.094488035162 0.912111346248 0.094488035162 0.333333333333 0.583333333333 0.0 NC_045512.2:25694-25723 + 25694 25723 10 NotMaximal UUG NearCognate ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25693;30;0&p=30&e=30&w=0&f=25694-25723", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25694-25723&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.38278 1.0 2.3 -8.42729565217 -20.78409 1.40131 NA 0.981611590428 0.884317108904 NA 0.445765912421 0.445765912421 0.366666666667 0.0 0.0 NC_045512.2:7893-7979 + 7893 7979 29 Maximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7892;87;0&p=30&e=30&w=0&f=7893-7979", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7893-7979&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.3931586207 1.0 1.67816091954 -11.5561972603 -21.7060413793 2.31288275861 NA 0.608637473547 0.526615660101 NA 1.0 0.315077323783 0.35632183908 0.3625 0.0 NC_045512.2:2115-2180 + 2115 2180 22 Maximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2114;66;0&p=30&e=30&w=0&f=2115-2180", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:2115-2180&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.3937318182 1.0 2.78787878788 -6.95644728262 -19.4132272727 0.0194954545273 NA 0.498420966954 0.609627217972 NA 0.094488035162 0.094488035162 0.409090909091 0.388235294118 0.0 NC_045512.2:19178-19300 + 19178 19300 41 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19177;123;0&p=30&e=30&w=0&f=19178-19300", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19178-19300&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.406604878 1.0 1.45528455285 -13.3352648044 -13.4500756098 -5.95652926824 NA 0.768324922676 0.364759889305 NA 0.706439850236 0.0174377340062 0.390243902439 0.223230490018 0.0 NC_045512.2:9852-9887 + 9852 9887 12 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9851;36;0&p=30&e=30&w=0&f=9852-9887", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9852-9887&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.407 1.0 1.61111111111 -12.0457241379 -14.1801833333 -5.22681666667 0.094488035162 0.094488035162 0.990594172229 0.094488035162 0.094488035162 0.094488035162 0.305555555556 1.28571428571 0.0 NC_045512.2:9003-9080 + 9003 9080 26 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9002;78;0&p=30&e=30&w=0&f=9003-9080", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9003-9080&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.4137692308 1.0 1.25641025641 -15.4517755102 -13.4980807692 -5.91568846157 NA 0.529425362201 0.764278040046 NA 0.566700309295 0.0174377340062 0.358974358974 0.0 0.0 NC_045512.2:21014-21139 + 21014 21139 42 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21013;126;0&p=30&e=30&w=0&f=21014-21139", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21014-21139&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.4160547619 1.0 1.43650793651 -13.5161486188 -14.9641880952 -4.45186666666 NA 0.658831189972 0.390053719681 NA 0.981627869119 0.094488035162 0.309523809524 0.333333333333 0.0 NC_045512.2:8013-8099 + 8013 8099 29 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8012;87;0&p=30&e=30&w=0&f=8013-8099", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8013-8099&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.4164827586 1.0 1.54022988506 -12.6062238806 -18.8162 -0.6002827586 NA 0.292749470943 0.643773400619 NA 0.253840143252 0.085388246785 0.344827586207 1.54666666667 0.0 NC_045512.2:16328-16357 + 16328 16357 10 NotMaximal ACG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16327;30;0&p=30&e=30&w=0&f=16328-16357", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16328-16357&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.42075 1.0 1.4 -13.8719642857 -13.78274 -5.63801 NA 1.0 1.0 NA 1.0 1.0 0.333333333333 1.875 0.233333333333 NC_045512.2:16241-16276 + 16241 16276 12 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16240;36;0&p=30&e=30&w=0&f=16241-16276", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16241-16276&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.42255 1.0 1.16666666667 -16.6479 -13.33205 -6.0905 NA 0.0174377340062 0.0894774540127 NA 0.0174377340062 0.0174377340062 0.416666666667 0.0 0.0 NC_045512.2:2564-2845 - 2564 2845 94 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2563;282;0&s=-&p=30&e=30&w=0&f=2564-2845-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:2564-2845&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -19.4283457447 1.0 2.17375886525 -8.93767292007 -25.3008095745 5.87246382977 NA 0.25216343806 0.094488035162 NA 0.467217971675 0.0894774540127 0.400709219858 0.267552182163 0.0 NC_045512.2:18294-18329 + 18294 18329 12 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18293;36;0&p=30&e=30&w=0&f=18294-18329", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18294-18329&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.438225 1.0 1.16666666667 -16.6613357143 -17.6217333333 -1.81649166667 0.813436431711 0.957056812632 0.417720983233 0.407429594661 1.0 0.407429594661 0.527777777778 0.923076923077 0.0 NC_045512.2:2564-2815 - 2564 2815 84 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2563;252;0&s=-&p=30&e=30&w=0&f=2564-2815-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:2564-2815&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -19.4395809524 1.0 2.23412698413 -8.70119786857 -26.1702714286 6.73069047617 NA 0.25216343806 0.094488035162 NA 0.436128927234 0.094488035162 0.404761904762 0.29347826087 0.0 NC_045512.2:3975-4100 + 3975 4100 42 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3974;126;0&p=30&e=30&w=0&f=3975-4100", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3975-4100&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.4419214286 0.9979 1.99741667949 -9.73353313221 -14.5964309524 -4.84549047622 NA 0.424678495849 0.494901513918 NA 1.0 0.0174377340062 0.349206349206 0.0 0.0 NC_045512.2:21329-21391 - 21329 21391 21 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21328;63;0&s=-&p=30&e=30&w=0&f=21329-21391-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21329-21391&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -19.4435428571 1.0 1.42857142857 -13.61048 -14.0300952381 -5.413447619 NA 0.468611427641 0.094488035162 NA 0.484961745076 0.094488035162 0.301587301587 0.0 0.0 NC_045512.2:3021-3203 + 3021 3203 61 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3020;183;0&p=30&e=30&w=0&f=3021-3203", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3021-3203&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.4532393443 0.9517 2.56080044654 -7.59654637305 -18.6914344262 -0.76180491807 NA 0.094488035162 0.832873188996 NA 0.094488035162 0.085388246785 0.398907103825 0.0 0.0 NC_045512.2:24674-24721 - 24674 24721 16 NotMaximal AGG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24673;48;0&s=-&p=30&e=30&w=0&f=24674-24721-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24674-24721&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -19.4701 1.0 1.77083333333 -10.99488 -27.46525 7.99515 NA 0.619283737587 0.814090835097 NA 0.743591079277 0.453221552987 0.375 0.0 0.4375 NC_045512.2:3951-4100 + 3951 4100 50 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3950;150;0&p=30&e=30&w=0&f=3951-4100", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3951-4100&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.47295 0.9974 2.02630594769 -9.61007394869 -14.18489 -5.28806 NA 0.424678495849 0.494901513918 NA 0.343053882468 0.0174377340062 0.34 0.0 0.0 NC_045512.2:10515-10583 + 10515 10583 23 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10514;69;0&p=30&e=30&w=0&f=10515-10583", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10515-10583&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.4732391304 1.0 1.27536231884 -15.2687897727 -16.390973913 -3.08226521736 1.0 0.912111346248 1.0 0.912111346248 1.0 0.912111346248 0.420289855072 0.0 0.0 NC_045512.2:1815-1904 - 1815 1904 30 Maximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1814;90;0&s=-&p=30&e=30&w=0&f=1815-1904-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1815-1904&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -19.4780233333 1.0 2.24444444444 -8.67832722771 -20.0502066667 0.572183333367 NA 0.424593846655 0.0894774540127 NA 0.89353084812 0.0 0.411111111111 0.535714285714 0.0 NC_045512.2:19611-19640 + 19611 19640 10 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19610;30;0&p=30&e=30&w=0&f=19611-19640", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19611-19640&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.49438 1.0 1.3 -14.9956769231 -23.58844 4.09406 NA 0.444811981117 0.827328666775 NA 0.440198600033 0.0174377340062 0.333333333333 0.0 0.0 NC_045512.2:6243-6347 + 6243 6347 35 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6242;105;0&p=30&e=30&w=0&f=6243-6347", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6243-6347&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.5062 0.9813 1.37815375117 -14.1538634448 -13.6318714286 -5.87432857143 0.477942373433 0.363337131695 0.637655868468 0.363337131695 0.921966465896 0.363337131695 0.352380952381 0.926470588235 0.0952380952381 NC_045512.2:2522-2551 - 2522 2551 10 Maximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2521;30;0&s=-&p=30&e=30&w=0&f=2522-2551-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:2522-2551&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -19.50777 1.0 1.76666666667 -11.0421339623 -15.71979 -3.78798 NA 0.094488035162 0.850402083672 NA 0.237646101253 0.0174377340062 0.4 0.0 0.0 NC_045512.2:24366-24437 + 24366 24437 24 NotMaximal AAG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24365;72;0&p=30&e=30&w=0&f=24366-24437", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24366-24437&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.5128 1.0 1.77777777778 -10.97595 -14.3977875 -5.1150125 NA 0.854488035162 0.590949047697 NA 1.0 0.541071137881 0.416666666667 0.0 0.541666666667 NC_045512.2:1323-1397 + 1323 1397 25 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1322;75;0&p=30&e=30&w=0&f=1323-1397", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1323-1397&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.514728 1.0 1.81333333333 -10.7617985294 -18.474772 -1.039956 NA 0.59783818981 0.469790004884 NA 0.0883998046557 0.0174377340062 0.386666666667 0.0 0.36 NC_045512.2:21008-21139 + 21008 21139 44 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21007;132;0&p=30&e=30&w=0&f=21008-21139", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21008-21139&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.5214727273 1.0 1.47727272727 -13.2145353846 -14.279575 -5.2418977273 NA 0.658831189972 0.390053719681 NA 0.543766889142 0.0174377340062 0.318181818182 0.3 0.0 NC_045512.2:24810-24872 + 24810 24872 21 NotMaximal AUG Canonical S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24809;63;0&p=30&e=30&w=0&f=24810-24872", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24810-24872&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.5253380952 1.0 1.42857142857 -13.6677366666 -9.36949047619 -10.155847619 0.863245971024 0.085388246785 0.890405339411 0.085388246785 0.890405339411 0.085388246785 0.428571428571 0.35 1.0 NC_045512.2:10506-10580 - 10506 10580 25 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10505;75;0&s=-&p=30&e=30&w=0&f=10506-10580-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10506-10580&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -19.529096 1.0 1.4 -13.9493542857 -12.536328 -6.992768 NA 1.0 0.87861305551 NA 0.473895490803 0.289930001628 0.4 0.0 0.0266666666667 NC_045512.2:2564-2800 - 2564 2800 79 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2563;237;0&s=-&p=30&e=30&w=0&f=2564-2800-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:2564-2800&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -19.5309037975 1.0 2.24894514768 -8.68447317075 -26.5583670886 7.02746329111 NA 0.25216343806 0.094488035162 NA 0.912111346248 0.094488035162 0.409282700422 0.303069053708 0.0 NC_045512.2:6613-6654 + 6613 6654 14 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6612;42;0&p=30&e=30&w=0&f=6613-6654", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6613-6654&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.5370714286 1.0 1.7380952381 -11.2405068493 -24.7387857143 5.20171428569 NA 0.813755494058 0.956936350317 NA 0.085388246785 0.085388246785 0.404761904762 0.0 0.0 NC_045512.2:9114-9191 + 9114 9191 26 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9113;78;0&p=30&e=30&w=0&f=9114-9191", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9114-9191&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.5580846154 1.0 1.32051282051 -14.810976699 -18.0798153846 -1.47826923078 NA 0.673065277552 0.415223832004 NA 0.592974116881 0.0174377340062 0.423076923077 0.286764705882 0.0 NC_045512.2:729-878 + 729 878 50 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;728;150;0&p=30&e=30&w=0&f=729-878", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:729-878&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.562896 1.0 1.50666666667 -12.9842230088 -13.042706 -6.52019 NA 0.0894774540127 0.544821748331 NA 1.0 0.0174377340062 0.46 0.63025210084 0.22 NC_045512.2:18722-18760 + 18722 18760 13 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18721;39;0&p=30&e=30&w=0&f=18722-18760", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18722-18760&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.5683538462 1.0 1.07692307692 -18.1706142858 -8.46963076923 -11.098723077 NA 0.99380758587 0.88521243692 NA 0.775048022139 0.557991209507 0.282051282051 2.6 0.0 NC_045512.2:21047-21139 + 21047 21139 31 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21046;93;0&p=30&e=30&w=0&f=21047-21139", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21047-21139&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.587083871 1.0 1.55913978495 -12.5627503448 -17.4303354839 -2.15674838713 NA 0.658831189972 0.390053719681 NA 0.951336480547 0.094488035162 0.311827956989 0.442857142857 0.0 NC_045512.2:8328-8372 + 8328 8372 15 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8327;45;0&p=30&e=30&w=0&f=8328-8372", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8328-8372&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.5908866667 1.0 1.26666666667 -15.4664894737 -8.79745333333 -10.7934333334 NA 0.675650333713 0.837493081556 NA 0.658850724402 0.601032069022 0.466666666667 1.37755102041 0.0 NC_045512.2:17771-17857 - 17771 17857 29 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17770;87;0&s=-&p=30&e=30&w=0&f=17771-17857-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17771-17857&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -19.5909827586 1.0 1.28735632184 -15.2179955357 -15.6838103448 -3.90717241377 NA 1.0 0.450678821423 NA 0.587162624125 0.23981442292 0.390804597701 0.0 0.0 NC_045512.2:21329-21406 - 21329 21406 26 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21328;78;0&s=-&p=30&e=30&w=0&f=21329-21406-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21329-21406&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -19.5952615385 1.0 1.37179487179 -14.2843962617 -17.0028923077 -2.59236923081 NA 0.468611427641 0.094488035162 NA 0.907214715937 0.0174377340062 0.294871794872 0.0 0.0 NC_045512.2:8856-8972 + 8856 8972 39 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8855;117;0&p=30&e=30&w=0&f=8856-8972", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8856-8972&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.6027589744 1.0 1.38461538462 -14.1575481482 -13.9483358974 -5.65442307696 NA 0.582220413479 0.0174377340062 NA 0.094488035162 0.0174377340062 0.401709401709 0.638181818182 0.0 NC_045512.2:1176-1226 + 1176 1226 17 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1175;51;0&p=30&e=30&w=0&f=1176-1226", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1176-1226&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.6056823529 1.0 2.01960784314 -9.70766796114 -16.5090588235 -3.09662352937 NA 1.0 0.586309620706 NA 0.499404199902 0.390053719681 0.43137254902 0.485714285714 0.0 NC_045512.2:3027-3203 + 3027 3203 59 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3026;177;0&p=30&e=30&w=0&f=3027-3203", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3027-3203&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.6067067797 0.9501 2.62500837128 -7.46919781064 -18.5884220339 -1.0182847458 NA 0.094488035162 0.832873188996 NA 0.620429757448 0.0 0.406779661017 0.0 0.0 NC_045512.2:5803-5910 + 5803 5910 36 Maximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5802;108;0&p=30&e=30&w=0&f=5803-5910", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5803-5910&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.6075472222 1.0 1.46296296296 -13.4026272152 -24.2722388889 4.66469166669 NA 0.77236529383 0.0 NA 0.094488035162 0.0 0.351851851852 0.626086956522 0.0 NC_045512.2:4710-4832 + 4710 4832 41 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4709;123;0&p=30&e=30&w=0&f=4710-4832", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4710-4832&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.6082658537 1.0 1.69918699187 -11.539792823 -15.8402682927 -3.76799756102 NA 0.912111346248 0.455663356666 NA 0.734445710565 0.455663356666 0.357723577236 0.274553571429 0.0 NC_045512.2:19352-19441 - 19352 19441 30 Maximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19351;90;0&s=-&p=30&e=30&w=0&f=19352-19441-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19352-19441&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -19.6114066667 1.0 1.43333333333 -13.6823767442 -20.58128 0.9698733333 NA 0.746189158392 0.975972651799 NA 0.884125020348 0.570773237832 0.322222222222 0.0 0.0 NC_045512.2:20999-21139 + 20999 21139 47 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20998;141;0&p=30&e=30&w=0&f=20999-21139", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20999-21139&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.6156808511 1.0 1.47517730496 -13.2971682693 -15.0375744681 -4.57810638301 NA 0.658831189972 0.390053719681 NA 0.334891746704 0.094488035162 0.31914893617 0.279761904762 0.0 NC_045512.2:9534-9563 - 9534 9563 10 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9533;30;0&s=-&p=30&e=30&w=0&f=9534-9563-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9534-9563&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -19.61699 1.0 1.43333333333 -13.686272093 -12.15066 -7.46633 0.368347712844 0.890405339411 0.390053719681 0.094488035162 0.477942373433 0.094488035162 0.366666666667 0.0 0.566666666667 NC_045512.2:8950-8982 + 8950 8982 11 Maximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8949;33;0&p=30&e=30&w=0&f=8950-8982", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8950-8982&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.6242181818 1.0 1.21212121212 -16.18998 -16.9917727273 -2.63244545453 NA 0.884212925281 0.452648543057 NA 1.0 0.343053882468 0.363636363636 0.0 0.0 NC_045512.2:2697-2753 + 2697 2753 19 Maximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2696;57;0&p=30&e=30&w=0&f=2697-2753", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:2697-2753&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.6244842105 1.0 2.10526315789 -9.32162999999 -17.7787210526 -1.84576315787 NA 0.094488035162 0.390053719681 NA 1.0 0.094488035162 0.456140350877 0.339285714286 0.0 NC_045512.2:29325-29360 - 29325 29360 12 Maximal AUG Canonical N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29324;36;0&s=-&p=30&e=30&w=0&f=29325-29360-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29325-29360&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -19.6260416667 1.0 1.08333333333 -18.1163461539 -24.8646416667 5.23859999997 0.986729610939 1.0 0.884951977861 0.8716815888 1.0 0.884951977861 0.305555555556 1.2 0.0 NC_045512.2:21023-21139 + 21023 21139 39 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21022;117;0&p=30&e=30&w=0&f=21023-21139", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21023-21139&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.6307461538 1.0 1.47863247863 -13.2762849711 -14.9272128205 -4.70353333329 NA 0.658831189972 0.390053719681 NA 0.918293993163 0.094488035162 0.307692307692 0.365625 0.0 NC_045512.2:20609-20650 - 20609 20650 14 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20608;42;0&s=-&p=30&e=30&w=0&f=20609-20650-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20609-20650&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -19.6327428571 1.0 1.28571428571 -15.2699111111 -15.6581 -3.9746428571 NA 1.0 0.980224645938 NA 0.870629985349 0.870629985349 0.380952380952 0.0 0.0 NC_045512.2:2564-2917 - 2564 2917 118 Maximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2563;354;0&s=-&p=30&e=30&w=0&f=2564-2917-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:2564-2917&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -19.6403423729 1.0 2.09039548023 -9.39551513514 -24.4660550847 4.82571271185 NA 0.25216343806 0.0 NA 1.0 0.0 0.40395480226 0.35119047619 0.0 NC_045512.2:8019-8099 + 8019 8099 27 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8018;81;0&p=30&e=30&w=0&f=8019-8099", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8019-8099&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.6477444444 1.0 1.53086419753 -12.8344137096 -19.2924111111 -0.355333333289 NA 0.292749470943 0.643773400619 NA 1.0 0.283649682566 0.308641975309 1.57792207792 0.0 NC_045512.2:4731-4832 + 4731 4832 34 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4730;102;0&p=30&e=30&w=0&f=4731-4832", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4731-4832&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.6612794118 1.0 1.78431372549 -11.0189587912 -17.0596294118 -2.60165000004 NA 0.912111346248 0.455663356666 NA 0.560035813121 0.266475663357 0.352941176471 0.0 0.0 NC_045512.2:19484-19537 + 19484 19537 18 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19483;54;0&p=30&e=30&w=0&f=19484-19537", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19484-19537&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.6662666667 1.0 1.46296296296 -13.442764557 -8.64757222222 -11.0186944445 NA 0.987637961908 0.384258505616 NA 0.862311574149 0.35896467524 0.37037037037 0.54 0.0 NC_045512.2:25374-25445 + 25374 25445 24 NotMaximal AUU NearCognate S,ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25373;72;0&p=30&e=30&w=0&f=25374-25445", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25374-25445&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.6667041667 0.9896 1.76799184164 -11.1237527818 -23.1144791667 3.44777499997 NA 0.809659775354 0.468386781703 NA 0.803154810353 0.335868468175 0.319444444444 0.553846153846 0.111111111111 NC_045512.2:21044-21139 + 21044 21139 32 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21043;96;0&p=30&e=30&w=0&f=21044-21139", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21044-21139&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.679196875 1.0 1.5625 -12.594686 -16.80006875 -2.879128125 NA 0.658831189972 0.390053719681 NA 0.610034185252 0.0174377340062 0.322916666667 0.403361344538 0.0 NC_045512.2:24354-24437 + 24354 24437 28 NotMaximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24353;84;0&p=30&e=30&w=0&f=24354-24437", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24354-24437&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.7208964286 1.0 1.77380952381 -11.1178208054 -14.1722392857 -5.54865714289 NA 0.854488035162 0.565577079603 NA 0.094488035162 0.0174377340062 0.404761904762 0.0 0.464285714286 NC_045512.2:1198-1233 + 1198 1233 12 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1197;36;0&p=30&e=30&w=0&f=1198-1233", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1198-1233&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.7224583333 1.0 1.5 -13.1483055555 -23.0036666667 3.28120833337 0.432062510174 0.988604916165 0.532589939769 0.401354387107 1.0 0.521194855934 0.416666666667 0.0 0.0 NC_045512.2:24798-24872 + 24798 24872 25 NotMaximal CUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24797;75;0&p=30&e=30&w=0&f=24798-24872", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24798-24872&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.730544 1.0 1.44 -13.7017666667 -10.676672 -9.053872 NA 0.085388246785 0.890405339411 NA 0.473377828423 0.085388246785 0.44 0.275735294118 0.933333333333 NC_045512.2:24026-24070 - 24026 24070 15 NotMaximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24025;45;0&s=-&p=30&e=30&w=0&f=24026-24070-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24026-24070&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -19.7368466667 1.0 1.77777777778 -11.10197625 -28.7209866667 8.98413999997 NA 0.454432687612 0.890405339411 NA 1.0 0.454432687612 0.4 0.0 0.0 NC_045512.2:5046-5084 + 5046 5084 13 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5045;39;0&p=30&e=30&w=0&f=5046-5084", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5046-5084&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.7379153846 1.0 1.4358974359 -13.7460482143 -11.8602692308 -7.87764615383 NA 0.094488035162 0.883187367736 NA 0.584092462966 0.0174377340062 0.358974358974 0.0 0.0 NC_045512.2:3098-3142 - 3098 3142 15 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3097;45;0&s=-&p=30&e=30&w=0&f=3098-3142-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3098-3142&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -19.74086 0.9808 2.17860281282 -9.06124782537 -17.71636 -2.0245 NA 0.085388246785 0.995135927071 NA 0.571925769168 0.085388246785 0.355555555556 0.0 0.0 NC_045512.2:1815-1850 - 1815 1850 12 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1814;36;0&s=-&p=30&e=30&w=0&f=1815-1850-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1815-1850&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -19.7435916667 1.0 2.41666666667 -8.16976206898 -21.8736583333 2.13006666663 NA 0.424593846655 0.526114276412 NA 0.786557056813 0.0803776656357 0.361111111111 0.0 0.0 NC_045512.2:8847-8972 + 8847 8972 42 Maximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8846;126;0&p=30&e=30&w=0&f=8847-8972", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8847-8972&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.7548880952 1.0 1.42857142857 -13.8284216666 -14.222552381 -5.53233571425 NA 0.582220413479 0.0174377340062 NA 0.477942373433 0.0174377340062 0.404761904762 0.581538461538 0.0 NC_045512.2:3642-3749 + 3642 3749 36 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3641;108;0&p=30&e=30&w=0&f=3642-3749", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3642-3749&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.7632611111 1.0 2.03703703704 -9.70196454545 -14.670625 -5.0926361111 NA 0.7689825818 0.687813771773 NA 1.0 0.466742633892 0.342592592593 0.321428571429 0.0 NC_045512.2:2564-2767 - 2564 2767 68 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2563;204;0&s=-&p=30&e=30&w=0&f=2564-2767-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:2564-2767&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -19.7671455882 1.0 2.37745098039 -8.31442824741 -27.1666058824 7.39946029415 NA 0.25216343806 0.094488035162 NA 1.0 0.094488035162 0.421568627451 0.331168831169 0.0 NC_045512.2:7037-7126 - 7037 7126 30 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7036;90;0&s=-&p=30&e=30&w=0&f=7037-7126-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7037-7126&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -19.8055166667 1.0 1.93333333333 -10.2442327586 -24.2854466667 4.47992999997 NA 0.630349991861 0.520253947583 NA 0.826277063324 0.324470128602 0.411111111111 0.0 0.3 NC_045512.2:7914-7979 + 7914 7979 22 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7913;66;0&p=30&e=30&w=0&f=7914-7979", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7914-7979&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.8064590909 1.0 1.72727272727 -11.4668973684 -20.0009636364 0.194504545464 NA 0.608637473547 0.526615660101 NA 1.0 0.315077323783 0.378787878788 0.44 0.0 NC_045512.2:16034-16102 + 16034 16102 23 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16033;69;0&p=30&e=30&w=0&f=16034-16102", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16034-16102&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.8076956522 1.0 1.13043478261 -17.5221923077 -13.4704 -6.3372956522 0.783311085789 0.0174377340062 1.0 0.0174377340062 1.0 0.0174377340062 0.347826086957 0.0 0.0 NC_045512.2:23329-23376 + 23329 23376 16 Maximal AUG Canonical S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23328;48;0&p=30&e=30&w=0&f=23329-23376", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23329-23376&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.80849375 1.0 1.83333333333 -10.8046329545 -21.3863 1.57780625 0.442900862771 0.343053882468 0.703298062836 0.0174377340062 1.0 0.343053882468 0.375 0.0 0.333333333333 NC_045512.2:13047-13085 + 13047 13085 13 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13046;39;0&p=30&e=30&w=0&f=13047-13085", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13047-13085&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.8256384615 1.0 1.23076923077 -16.10833125 -16.1698076923 -3.65583076919 NA 0.789656519616 1.0 NA 0.833735959629 0.583985023604 0.384615384615 0.0 0.0 NC_045512.2:2564-2896 - 2564 2896 111 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2563;333;0&s=-&p=30&e=30&w=0&f=2564-2896-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:2564-2896&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -19.8306432432 1.0 2.12912912913 -9.31396925245 -25.0991900901 5.26854684689 NA 0.25216343806 0.094488035162 NA 0.390053719681 0.094488035162 0.408408408408 0.366497908871 0.0 NC_045512.2:3969-4100 + 3969 4100 44 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3968;132;0&p=30&e=30&w=0&f=3969-4100", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3969-4100&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.8373068182 0.998 2.02026137587 -9.81917837717 -14.6551295455 -5.18217727275 NA 0.424678495849 0.494901513918 NA 0.473127136578 0.0174377340062 0.356060606061 0.0 0.0 NC_045512.2:27467-27565 - 27467 27565 33 Maximal AAG NearCognate ORF7a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27466;99;0&s=-&p=30&e=30&w=0&f=27467-27565-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27467-27565&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -19.8373242424 1.0 1.37373737374 -14.440405147 -19.2899484848 -0.547375757552 NA 0.974706169624 0.61680286505 NA 1.0 0.591509034674 0.393939393939 0.26902173913 0.0 NC_045512.2:1087-1128 + 1087 1128 14 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1086;42;0&p=30&e=30&w=0&f=1087-1128", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1087-1128&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.8376285714 1.0 1.5 -13.2250857143 -13.8203928571 -6.01723571426 NA 1.0 0.486781702751 NA 0.692554126648 0.486781702751 0.333333333333 0.0 0.619047619048 NC_045512.2:27467-27526 - 27467 27526 20 NotMaximal GUG NearCognate ORF7a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27466;60;0&s=-&p=30&e=30&w=0&f=27467-27526-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27467-27526&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -19.85252 1.0 1.51666666667 -13.0895736264 -17.678345 -2.174175 NA 0.974706169624 0.61680286505 NA 1.0 0.591509034674 0.416666666667 0.384615384615 0.0 NC_045512.2:17771-17842 - 17771 17842 24 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17770;72;0&s=-&p=30&e=30&w=0&f=17771-17842-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17771-17842&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -19.8593458333 1.0 1.27777777778 -15.5420967391 -14.8222833333 -5.03706249997 0.563255738239 1.0 0.450678821423 0.364759889305 1.0 0.450678821423 0.361111111111 0.0 0.0 NC_045512.2:20150-20185 - 20150 20185 12 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20149;36;0&s=-&p=30&e=30&w=0&f=20150-20185-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20150-20185&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -19.86365 1.0 1.55555555556 -12.7694892857 -28.3331166667 8.46946666667 NA 1.0 0.0 NA 0.540810678821 0.0 0.277777777778 0.0 0.0 NC_045512.2:17411-17470 + 17411 17470 20 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17410;60;0&p=30&e=30&w=0&f=17411-17470", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17411-17470&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.868705 1.0 1.46666666667 -13.5468443182 -10.982485 -8.88622 NA 0.783490151392 0.890405339411 NA 0.987712843887 0.565531499267 0.516666666667 0.526315789474 0.0 NC_045512.2:17771-17845 - 17771 17845 25 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17770;75;0&s=-&p=30&e=30&w=0&f=17771-17845-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17771-17845&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -19.868888 1.0 1.29333333333 -15.362542268 -15.621872 -4.247016 NA 1.0 0.450678821423 NA 0.945876607521 0.450678821423 0.373333333333 0.0 0.0 NC_045512.2:27991-28038 + 27991 28038 16 Maximal UUG NearCognate ORF8 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27990;48;0&p=30&e=30&w=0&f=27991-28038", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27991-28038&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.88289375 0.6832 4.3792709841 -4.54022914367 -20.06925625 0.1863625 NA 0.0174377340062 0.697756796354 NA 0.626332410874 0.0174377340062 0.354166666667 0.666666666667 0.0 NC_045512.2:7911-7979 + 7911 7979 23 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7910;69;0&p=30&e=30&w=0&f=7911-7979", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7911-7979&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.8854956522 1.0 1.76811594203 -11.2467147541 -20.2316043478 0.346108695626 NA 0.608637473547 0.526615660101 NA 0.800081393456 0.315077323783 0.391304347826 0.383333333333 0.0 NC_045512.2:11979-12086 - 11979 12086 36 Maximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;11978;108;0&s=-&p=30&e=30&w=0&f=11979-12086-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:11979-12086&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -19.8886416667 1.0 1.26851851852 -15.6786372263 -20.4971388889 0.608497222189 NA 0.530216506593 0.0174377340062 NA 0.452648543057 0.0174377340062 0.416666666667 0.0 0.0 NC_045512.2:1182-1226 + 1182 1226 15 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1181;45;0&p=30&e=30&w=0&f=1182-1226", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1182-1226&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.8967733333 1.0 2.0 -9.94838666665 -17.6082933333 -2.28847999997 NA 1.0 0.586309620706 NA 1.0 0.586309620706 0.422222222222 0.576923076923 0.0 NC_045512.2:24813-24872 + 24813 24872 20 NotMaximal AUG Canonical S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24812;60;0&p=30&e=30&w=0&f=24813-24872", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24813-24872&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.8996 1.0 1.4 -14.214 -9.498405 -10.401195 0.364759889305 0.085388246785 0.890405339411 0.0 1.0 0.085388246785 0.433333333333 0.357142857143 1.0 NC_045512.2:3492-3536 + 3492 3536 15 Maximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3491;45;0&p=30&e=30&w=0&f=3492-3536", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3492-3536&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.9002066667 0.9998 1.93412585409 -10.2889926344 -11.68094 -8.2192666667 NA 0.094488035162 0.993911769494 NA 0.650102555755 0.0883998046557 0.355555555556 0.0 0.0 NC_045512.2:732-878 + 732 878 49 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;731;147;0&p=30&e=30&w=0&f=732-878", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:732-878&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.9084469388 1.0 1.52380952381 -13.0649183036 -13.3926591837 -6.51578775513 NA 0.0894774540127 0.544821748331 NA 0.912111346248 0.0174377340062 0.462585034014 0.636363636364 0.224489795918 NC_045512.2:7788-7835 + 7788 7835 16 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7787;48;0&p=30&e=30&w=0&f=7788-7835", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7788-7835&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.91774375 1.0 1.4375 -13.8558217391 -14.718725 -5.19901875 NA 0.855441966466 0.890405339411 NA 0.975494058278 0.625264528732 0.333333333333 0.0 0.0 NC_045512.2:20867-20911 + 20867 20911 15 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20866;45;0&p=30&e=30&w=0&f=20867-20911", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20867-20911&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.9187866667 1.0 1.62222222222 -12.2787041096 -19.2414133333 -0.677373333367 NA 0.364759889305 0.772121113462 NA 1.0 0.0174377340062 0.466666666667 0.0 0.0 NC_045512.2:3945-4100 + 3945 4100 52 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3944;156;0&p=30&e=30&w=0&f=3945-4100", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3945-4100&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.9229230769 0.9947 2.06020033819 -9.67038142242 -14.3694288462 -5.55349423075 NA 0.424678495849 0.0174377340062 NA 0.569565358945 0.0174377340062 0.339743589744 0.0 0.0 NC_045512.2:4998-5054 - 4998 5054 19 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4997;57;0&s=-&p=30&e=30&w=0&f=4998-5054-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4998-5054&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -19.9232421053 1.0 1.36842105263 -14.5592923077 -15.5269842105 -4.39625789477 NA 0.97632101579 0.266078463292 NA 0.63025883119 0.266078463292 0.456140350877 0.339285714286 0.0 NC_045512.2:20861-20899 - 20861 20899 13 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20860;39;0&s=-&p=30&e=30&w=0&f=20861-20899-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20861-20899&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -19.9233384615 1.0 1.74358974359 -11.4266205882 -20.6749230769 0.751584615423 NA 0.99225459873 1.0 NA 0.541696239622 0.541696239622 0.435897435897 0.0 0.0 NC_045512.2:24834-24872 + 24834 24872 13 NotMaximal GUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24833;39;0&p=30&e=30&w=0&f=24834-24872", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24834-24872&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.9256538462 1.0 1.30769230769 -15.2372647059 -10.3576461538 -9.56800769235 NA 0.085388246785 0.890405339411 NA 0.851779260947 0.085388246785 0.435897435897 0.0 1.0 NC_045512.2:27467-27502 - 27467 27502 12 NotMaximal AAG NearCognate ORF7a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27466;36;0&s=-&p=30&e=30&w=0&f=27467-27502-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27467-27502&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -19.9277333333 1.0 1.41666666667 -14.0666352941 -15.7105 -4.2172333333 NA 0.974706169624 0.800768354224 NA 0.703578056324 0.588647240762 0.361111111111 0.0 0.0 NC_045512.2:3972-4100 + 3972 4100 43 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3971;129;0&p=30&e=30&w=0&f=3972-4100", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3972-4100&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.9281651163 0.998 1.99747675671 -9.97666934015 -14.8843883721 -5.04377674421 NA 0.424678495849 0.494901513918 NA 0.765717076347 0.0174377340062 0.348837209302 0.0 0.0 NC_045512.2:4334-4402 - 4334 4402 23 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4333;69;0&s=-&p=30&e=30&w=0&f=4334-4402-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4334-4402&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -19.9305913043 1.0 2.02898550725 -9.82293428569 -19.1238217391 -0.80676956517 NA 0.979550708123 0.0174377340062 NA 0.886817515872 0.0174377340062 0.347826086957 0.482517482517 0.0 NC_045512.2:2564-2872 - 2564 2872 103 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2563;309;0&s=-&p=30&e=30&w=0&f=2564-2872-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:2564-2872&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -19.9309242718 1.0 2.1715210356 -9.17832429208 -25.7304174757 5.79949320393 NA 0.25216343806 0.094488035162 NA 0.249363503174 0.0174377340062 0.398058252427 0.330481283422 0.0 NC_045512.2:4334-4387 - 4334 4387 18 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4333;54;0&s=-&p=30&e=30&w=0&f=4334-4387-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4334-4387&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -19.9328055556 1.0 2.11111111111 -9.44185526318 -21.4412 1.5083944444 NA 0.979550708123 0.0174377340062 NA 0.851346247762 0.0174377340062 0.333333333333 0.0 0.0 NC_045512.2:20919-20957 + 20919 20957 13 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20918;39;0&p=30&e=30&w=0&f=20919-20957", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20919-20957&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.9459615385 1.0 1.5641025641 -12.7523360656 -19.5322923077 -0.413669230808 NA 0.67340061859 0.667550056975 NA 1.0 0.461878560964 0.538461538462 1.08333333333 0.0 NC_045512.2:9126-9191 + 9126 9191 22 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9125;66;0&p=30&e=30&w=0&f=9126-9191", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9126-9191&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.9558136364 1.0 1.36363636364 -14.6342633334 -20.1711409091 0.215327272691 1.0 0.673065277552 0.415223832004 0.28767051929 1.0 0.28767051929 0.409090909091 0.0 0.0 NC_045512.2:24178-24273 + 24178 24273 32 Maximal AUA NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24177;96;0&p=30&e=30&w=0&f=24178-24273", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24178-24273&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.96349375 1.0 1.95833333333 -10.1941244681 -21.6181875 1.65469375 NA 0.893739215367 0.648950024418 NA 0.498762819469 0.281679960931 0.4375 0.21768707483 0.0520833333333 NC_045512.2:4368-4427 + 4368 4427 20 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4367;60;0&p=30&e=30&w=0&f=4368-4427", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4368-4427&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.977295 1.0 1.66666666667 -11.986377 -17.658575 -2.31872 NA 0.706439850236 0.464779423734 NA 0.323187367736 0.259107927723 0.4 0.857142857143 0.0 NC_045512.2:5136-5213 + 5136 5213 26 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5135;78;0&p=30&e=30&w=0&f=5136-5213", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5136-5213&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.9869 1.0 1.42307692308 -14.0448486486 -15.2516038462 -4.73529615385 0.976900537197 1.0 0.706439850236 0.683340387433 1.0 0.706439850236 0.435897435897 0.269896193772 0.0 NC_045512.2:24138-24167 + 24138 24167 10 NotMaximal CUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24137;30;0&p=30&e=30&w=0&f=24138-24167", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24138-24167&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -19.99238 1.0 2.63333333333 -7.59204303797 -16.35159 -3.64079 NA 0.997883770145 1.0 NA 0.545437082859 0.543320853003 0.433333333333 0.0 0.0 NC_045512.2:2564-2785 - 2564 2785 74 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2563;222;0&s=-&p=30&e=30&w=0&f=2564-2785-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:2564-2785&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -20.0182040541 1.0 2.33333333333 -8.5792303089 -26.5495472973 6.5313432432 NA 0.25216343806 0.094488035162 NA 0.0174377340062 0.0174377340062 0.418918918919 0.30976744186 0.0 NC_045512.2:16620-16658 + 16620 16658 13 Maximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16619;39;0&p=30&e=30&w=0&f=16620-16658", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16620-16658&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -20.0200692308 1.0 1.41025641026 -14.1960490909 -17.2955076923 -2.72456153849 NA 0.983005046394 0.526895653589 NA 0.246439850236 0.0174377340062 0.435897435897 0.557142857143 0.0 NC_045512.2:8821-8895 + 8821 8895 25 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8820;75;0&p=30&e=30&w=0&f=8821-8895", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8821-8895&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -20.026212 1.0 1.8 -11.1256733333 -23.754592 3.72838 NA 0.47565684519 0.612918769331 NA 0.094488035162 0.094488035162 0.466666666667 0.75 0.0 NC_045512.2:25847-25888 - 25847 25888 14 NotMaximal AAG NearCognate ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25846;42;0&s=-&p=30&e=30&w=0&f=25847-25888-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25847-25888&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -20.0298 1.0 1.7380952381 -11.5239945205 -23.1358571429 3.10605714286 NA 0.301797167508 0.094488035162 NA 0.094488035162 0.094488035162 0.285714285714 1.2 0.0 NC_045512.2:18239-18277 + 18239 18277 13 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18238;39;0&p=30&e=30&w=0&f=18239-18277", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18239-18277&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -20.0315692308 1.0 1.30769230769 -15.3182588236 -14.6549769231 -5.37659230772 0.890405339411 0.0174377340062 0.890405339411 0.0174377340062 1.0 0.0174377340062 0.435897435897 1.11428571429 0.0 NC_045512.2:19478-19537 + 19478 19537 20 Maximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19477;60;0&p=30&e=30&w=0&f=19478-19537", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19478-19537&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -20.033385 1.0 1.5 -13.35559 -7.78484 -12.248545 NA 0.987637961908 0.384258505616 NA 0.730105811493 0.319540940908 0.4 0.428571428571 0.0 NC_045512.2:2826-2882 - 2826 2882 19 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2825;57;0&s=-&p=30&e=30&w=0&f=2826-2882-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:2826-2882&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -20.0555789474 1.0 1.9649122807 -10.2068571429 -21.8311 1.7755210526 NA 1.0 0.523936187531 NA 1.0 0.523936187531 0.438596491228 0.74025974026 0.0 NC_045512.2:3591-3749 + 3591 3749 53 Maximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3590;159;0&p=30&e=30&w=0&f=3591-3749", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3591-3749&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -20.0582811321 1.0 1.85534591195 -10.8110735593 -13.5048698113 -6.55341132078 NA 0.7689825818 0.094488035162 NA 0.557906560313 0.0174377340062 0.364779874214 0.382211538462 0.0 NC_045512.2:2826-2864 - 2826 2864 13 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2825;39;0&s=-&p=30&e=30&w=0&f=2826-2864-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:2826-2864&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -20.0587153846 1.0 1.92307692308 -10.430532 -15.4237923077 -4.63492307691 NA 1.0 0.877717727495 NA 0.445176623799 0.410783005046 0.461538461538 0.4875 0.0 NC_045512.2:21117-21191 + 21117 21191 25 Maximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21116;75;0&p=30&e=30&w=0&f=21117-21191", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21117-21191&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -20.067148 1.0 1.58666666667 -12.6473621849 -26.154788 6.08764 NA 0.58774540127 0.52256877747 NA 1.0 0.482874816865 0.4 0.347222222222 0.0 NC_045512.2:8496-8525 + 8496 8525 10 Maximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8495;30;0&p=30&e=30&w=0&f=8496-8525", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8496-8525&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -20.07217 1.0 1.13333333333 -17.7107382353 -11.51763 -8.55454 NA 0.974706169624 0.907077974931 NA 1.0 0.881784144555 0.366666666667 0.0 0.0 NC_045512.2:17771-17824 - 17771 17824 18 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17770;54;0&s=-&p=30&e=30&w=0&f=17771-17824-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17771-17824&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -20.0754333333 1.0 1.18518518519 -16.938646875 -15.6785 -4.3969333333 NA 1.0 0.450678821423 NA 0.0894774540127 0.0894774540127 0.37037037037 0.0 0.0 NC_045512.2:25810-25860 - 25810 25860 17 NotMaximal AUA NearCognate ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25809;51;0&s=-&p=30&e=30&w=0&f=25810-25860-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25810-25860&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -20.0866176471 1.0 2.05882352941 -9.75635714288 -22.6407411765 2.55412352937 NA 0.864958489337 0.833810841608 NA 0.477942373433 0.0883998046557 0.333333333333 0.728571428571 0.0 NC_045512.2:12804-12836 + 12804 12836 11 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12803;33;0&p=30&e=30&w=0&f=12804-12836", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12804-12836&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -20.0932090909 1.0 1.69696969697 -11.8406410714 -12.8902727273 -7.20293636363 NA 0.0174377340062 0.771232296923 NA 0.972840631613 0.0174377340062 0.363636363636 0.916666666667 0.030303030303 NC_045512.2:23801-23830 - 23801 23830 10 NotMaximal AUA NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23800;30;0&s=-&p=30&e=30&w=0&f=23801-23830-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23801-23830&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -20.10479 1.0 2.66666666667 -7.53929625 -26.79149 6.6867 NA 0.225990558359 0.290844864073 NA 0.954250366271 0.0174377340062 0.333333333333 0.0 0.0 NC_045512.2:5982-6086 + 5982 6086 35 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5981;105;0&p=30&e=30&w=0&f=5982-6086", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5982-6086&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -20.1059514286 0.9813 1.63049176194 -12.3312192664 -14.2139371429 -5.89201428574 NA 0.697821911118 0.747250529057 NA 0.480328829562 0.094488035162 0.32380952381 0.75 0.0 NC_045512.2:4605-4667 - 4605 4667 21 Maximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4604;63;0&s=-&p=30&e=30&w=0&f=4605-4667-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4605-4667&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -20.1265619048 1.0 1.47619047619 -13.6341225807 -15.6313857143 -4.49517619051 NA 1.0 0.094488035162 NA 0.0174377340062 0.0174377340062 0.412698412698 0.381818181818 0.0 NC_045512.2:18504-18551 + 18504 18551 16 Maximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18503;48;0&p=30&e=30&w=0&f=18504-18551", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18504-18551&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -20.14566875 1.0 1.35416666667 -14.8768015385 -16.02896875 -4.1167 NA 0.997366107765 0.276405664985 NA 0.811893211786 0.276405664985 0.354166666667 0.8 0.0 NC_045512.2:4998-5057 - 4998 5057 20 Maximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4997;60;0&s=-&p=30&e=30&w=0&f=4998-5057-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4998-5057&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -20.152725 1.0 1.41666666667 -14.2254529412 -15.474225 -4.6785 NA 0.97632101579 0.266078463292 NA 0.994989418851 0.266078463292 0.45 0.333333333333 0.0 NC_045512.2:22760-22789 - 22760 22789 10 NotMaximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22759;30;0&s=-&p=30&e=30&w=0&f=22760-22789-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22760-22789&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -20.1571 1.0 3.1 -6.50229032258 -26.07652 5.91942 NA 0.276959140485 0.815874979652 NA 1.0 0.276959140485 0.333333333333 0.0 0.0 NC_045512.2:6114-6152 + 6114 6152 13 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6113;39;0&p=30&e=30&w=0&f=6114-6152", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6114-6152&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -20.1639769231 0.9813 1.67229924302 -12.0576368179 -17.0191846154 -3.14479230772 NA 0.981299039557 0.872905746378 NA 0.390053719681 0.383965489175 0.384615384615 0.0 0.179487179487 NC_045512.2:23469-23510 + 23469 23510 14 NotMaximal AUU NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23468;42;0&p=30&e=30&w=0&f=23469-23510", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23469-23510&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -20.1805857143 1.0 2.80952380952 -7.18292033899 -21.11895 0.9383642857 NA 0.460371154159 0.715487546801 NA 0.772026697054 0.333954094091 0.380952380952 0.65625 0.0 NC_045512.2:21053-21139 + 21053 21139 29 NotMaximal ACG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21052;87;0&p=30&e=30&w=0&f=21053-21139", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21053-21139&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -20.1991413793 1.0 1.62068965517 -12.4633 -18.2026586207 -1.99648275861 NA 0.658831189972 0.390053719681 NA 1.0 0.094488035162 0.32183908046 0.44387755102 0.0 NC_045512.2:6797-6868 - 6797 6868 24 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6796;72;0&s=-&p=30&e=30&w=0&f=6797-6868-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6797-6868&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -20.2014083333 1.0 1.58333333333 -12.7587842105 -26.4095291667 6.20812083337 NA 0.094488035162 0.262939931629 NA 1.0 0.094488035162 0.305555555556 0.6 0.208333333333 NC_045512.2:19241-19300 + 19241 19300 20 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19240;60;0&p=30&e=30&w=0&f=19241-19300", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19241-19300&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -20.21121 1.0 1.8 -11.22845 -14.923725 -5.287485 NA 0.768324922676 0.364759889305 NA 0.919892560638 0.0174377340062 0.433333333333 0.0 0.0 NC_045512.2:7410-7490 - 7410 7490 27 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7409;81;0&s=-&p=30&e=30&w=0&f=7410-7490-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7410-7490&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -20.2126592593 1.0 1.58024691358 -12.7908234375 -15.6803185185 -4.53234074078 NA 1.0 0.094488035162 NA 1.0 0.094488035162 0.308641975309 0.54 0.0 NC_045512.2:16011-16049 + 16011 16049 13 Maximal ACG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;16010;39;0&p=30&e=30&w=0&f=16011-16049", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:16011-16049&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -20.2184923077 1.0 1.69230769231 -11.9472909091 -22.0805076923 1.86201538461 NA 0.784463617125 0.452648543057 NA 0.762825980791 0.364759889305 0.435897435897 1.11428571429 0.0 NC_045512.2:843-878 + 843 878 12 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;842;36;0&p=30&e=30&w=0&f=843-878", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:843-878&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -20.2219666667 1.0 1.69444444444 -11.9342754099 -12.8543833333 -7.36758333337 NA 0.0894774540127 0.912111346248 NA 0.522220413479 0.0174377340062 0.472222222222 0.0 0.0 NC_045512.2:20886-20957 + 20886 20957 24 Maximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20885;72;0&p=30&e=30&w=0&f=20886-20957", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20886-20957&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -20.2321375 1.0 1.56944444444 -12.8912734513 -19.572075 -0.6600625 NA 0.67340061859 0.64493569917 NA 0.87713495035 0.439264203158 0.5 0.685714285714 0.0 NC_045512.2:6006-6086 + 6006 6086 27 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6005;81;0&p=30&e=30&w=0&f=6006-6086", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6006-6086&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -20.2389814815 0.9813 1.73617178355 -11.6572459438 -14.1066259259 -6.13235555557 NA 0.697821911118 0.928744912909 NA 0.889959303272 0.596412176461 0.308641975309 1.05194805195 0.0 NC_045512.2:20870-20911 + 20870 20911 14 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20869;42;0&p=30&e=30&w=0&f=20870-20911", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20870-20911&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -20.2497785714 1.0 1.7380952381 -11.6505575342 -20.2769142857 0.0271357143143 NA 0.364759889305 0.772121113462 NA 0.960426501709 0.0174377340062 0.47619047619 0.0 0.0 NC_045512.2:7779-7835 + 7779 7835 19 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7778;57;0&p=30&e=30&w=0&f=7779-7835", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7779-7835&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -20.2529736842 1.0 1.43859649123 -14.0782865854 -13.2982894737 -6.95468421052 NA 0.855441966466 0.890405339411 NA 0.706439850236 0.649770470454 0.315789473684 0.0 0.0 NC_045512.2:6030-6086 + 6030 6086 19 NotMaximal ACG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6029;57;0&p=30&e=30&w=0&f=6030-6086", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6030-6086&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -20.2559473684 0.9813 1.6626725204 -12.1827642665 -15.4413105263 -4.81463684208 NA 0.697821911118 0.928744912909 NA 0.981299039557 0.626566824027 0.280701754386 1.9 0.0 NC_045512.2:19202-19300 + 19202 19300 33 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19201;99;0&p=30&e=30&w=0&f=19202-19300", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19202-19300&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -20.2909484848 1.0 1.58585858586 -12.7949292993 -13.5898151515 -6.70113333328 0.237646101253 0.768324922676 0.364759889305 0.0174377340062 1.0 0.0174377340062 0.393939393939 0.26902173913 0.0 NC_045512.2:24213-24326 + 24213 24326 38 Maximal CUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24212;114;0&p=30&e=30&w=0&f=24213-24326", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24213-24326&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -20.3014921053 1.0 1.35964912281 -14.93142 -15.1255631579 -5.17592894741 NA 0.25216343806 0.848933745727 NA 0.800693472245 0.094488035162 0.385964912281 0.0 0.421052631579 NC_045512.2:18464-18520 + 18464 18520 19 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18463;57;0&p=30&e=30&w=0&f=18464-18520", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18464-18520&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -20.3051105263 1.0 1.45614035088 -13.944473494 -11.8163 -8.4888105263 NA 0.817349829074 0.905492430409 NA 0.53419501872 0.446306364968 0.385964912281 0.0 0.0 NC_045512.2:4904-4942 - 4904 4942 13 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4903;39;0&s=-&p=30&e=30&w=0&f=4904-4942-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4904-4942&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -20.3057923077 1.0 2.30769230769 -8.79917666667 -19.6155384615 -0.690253846162 NA 0.094488035162 0.3371902979 NA 0.587595637311 0.0883998046557 0.358974358974 0.0 0.0 NC_045512.2:8292-8336 - 8292 8336 15 Maximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8291;45;0&s=-&p=30&e=30&w=0&f=8292-8336-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8292-8336&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -20.3195533333 1.0 1.15555555556 -17.5842288461 -21.8288066667 1.50925333337 NA 1.0 0.359619078626 NA 1.0 0.359619078626 0.444444444444 0.46875 0.0 NC_045512.2:9186-9230 - 9186 9230 15 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9185;45;0&s=-&p=30&e=30&w=0&f=9186-9230-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9186-9230&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -20.3273533333 1.0 1.17777777778 -17.2590735849 -12.0521066667 -8.27524666663 NA 0.912111346248 0.673065277552 NA 1.0 0.489099788377 0.444444444444 0.46875 0.0 NC_045512.2:8022-8099 + 8022 8099 26 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8021;78;0&p=30&e=30&w=0&f=8022-8099", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8022-8099&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -20.3325538462 1.0 1.55128205128 -13.1069355372 -20.0768153846 -0.255738461585 NA 0.292749470943 0.643773400619 NA 0.390053719681 0.085388246785 0.307692307692 1.67142857143 0.0 NC_045512.2:23652-23681 - 23652 23681 10 Maximal AAG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23651;30;0&s=-&p=30&e=30&w=0&f=23652-23681-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23652-23681&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -20.33362 1.0 1.93333333333 -10.5173896552 -24.43572 4.1021 NA 0.706439850236 0.740146508221 NA 0.907377502849 0.551447175647 0.4 0.0 0.0 NC_045512.2:19208-19300 + 19208 19300 31 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19207;93;0&p=30&e=30&w=0&f=19208-19300", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19208-19300&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -20.3408064516 1.0 1.60215053763 -12.6959395973 -14.2779225806 -6.06288387095 NA 0.768324922676 0.364759889305 NA 1.0 0.0174377340062 0.387096774194 0.0 0.0 NC_045512.2:1372-1404 + 1372 1404 11 Maximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1371;33;0&p=30&e=30&w=0&f=1372-1404", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1372-1404&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -20.3428545455 1.0 2.54545454545 -7.9918357143 -31.9593818182 11.6165272727 NA 0.640673937815 0.888487709588 NA 0.999036301481 0.523542243204 0.454545454545 0.0 0.0 NC_045512.2:2564-2629 - 2564 2629 22 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2563;66;0&s=-&p=30&e=30&w=0&f=2564-2629-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:2564-2629&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -20.3542181818 1.0 2.5303030303 -8.04418203592 -27.9761545455 7.62193636365 NA 0.25216343806 0.909757447501 NA 0.220345108253 0.0 0.439393939394 0.317307692308 0.0 NC_045512.2:6003-6086 + 6003 6086 28 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6002;84;0&p=30&e=30&w=0&f=6003-6086", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6003-6086&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -20.3635571429 0.9813 1.72269218896 -11.8207752223 -14.7696464286 -5.59391071433 NA 0.697821911118 0.928744912909 NA 0.362204134788 0.094488035162 0.309523809524 1.01818181818 0.0 NC_045512.2:20656-20700 - 20656 20700 15 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20655;45;0&s=-&p=30&e=30&w=0&f=20656-20700-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20656-20700&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -20.3679133333 1.0 2.13333333333 -9.54745937498 -26.5121333333 6.14422000003 NA 0.887605404525 0.88521243692 NA 0.0803776656357 0.0803776656357 0.488888888889 0.743801652893 0.0 NC_045512.2:8913-8972 + 8913 8972 20 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8912;60;0&p=30&e=30&w=0&f=8913-8972", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8913-8972&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -20.368975 1.0 1.23333333333 -16.5153851351 -14.98509 -5.383885 NA 0.582220413479 0.657278202832 NA 0.975350805795 0.263366433339 0.333333333333 0.0 0.0 NC_045512.2:8364-8402 - 8364 8402 13 Maximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8363;39;0&s=-&p=30&e=30&w=0&f=8364-8402-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8364-8402&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -20.3754692308 1.0 1.5641025641 -13.0269393443 -20.9623769231 0.586907692277 NA 0.949887677031 0.555542894351 NA 0.364759889305 0.0174377340062 0.384615384615 0.696428571429 0.0 NC_045512.2:8211-8252 + 8211 8252 14 Maximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8210;42;0&p=30&e=30&w=0&f=8211-8252", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8211-8252&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -20.3906357143 1.0 1.52380952381 -13.3813546875 -17.9896285714 -2.40100714287 NA 0.678339573498 1.0 NA 1.0 0.678339573498 0.309523809524 0.0 0.0 NC_045512.2:27467-27559 - 27467 27559 31 NotMaximal GUG NearCognate ORF7a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27466;93;0&s=-&p=30&e=30&w=0&f=27467-27559-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27467-27559&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -20.4018290323 1.0 1.43010752688 -14.2659406015 -19.5045193548 -0.897309677461 NA 0.974706169624 0.61680286505 NA 0.706439850236 0.591509034674 0.397849462366 0.281818181818 0.0 NC_045512.2:6000-6086 + 6000 6086 29 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5999;87;0&p=30&e=30&w=0&f=6000-6086", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6000-6086&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -20.4073655172 0.9813 1.67500231291 -12.1834849778 -14.266837931 -6.14052758617 NA 0.697821911118 0.747250529057 NA 0.705876607521 0.368347712844 0.310344827586 0.966666666667 0.0 NC_045512.2:1997-2032 - 1997 2032 12 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1996;36;0&s=-&p=30&e=30&w=0&f=1997-2032-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1997-2032&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -20.4082 1.0 2.72222222222 -7.49688979592 -40.619275 20.211075 NA 0.70035161973 0.368347712844 NA 0.374494546638 0.0883998046557 0.388888888889 0.0 0.0 NC_045512.2:3717-3749 + 3717 3749 11 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3716;33;0&p=30&e=30&w=0&f=3717-3749", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3717-3749&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -20.4210727273 1.0 2.0 -10.2105363637 -8.47124545455 -11.9498272728 NA 0.7689825818 0.912111346248 NA 0.66136741006 0.599234901514 0.393939393939 0.0 0.0 NC_045512.2:8585-8629 - 8585 8629 15 Maximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8584;45;0&s=-&p=30&e=30&w=0&f=8585-8629-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8585-8629&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -20.42592 1.0 2.71111111111 -7.53415081967 -23.3553666667 2.92944666667 NA 0.452648543057 0.481022301807 NA 0.581494383852 0.343053882468 0.288888888889 0.0 0.0 NC_045512.2:738-878 + 738 878 47 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;737;141;0&p=30&e=30&w=0&f=738-878", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:738-878&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -20.4273553191 1.0 1.52482269504 -13.3965446511 -13.5497276596 -6.87762765953 NA 0.0894774540127 0.544821748331 NA 0.094488035162 0.0174377340062 0.475177304965 0.628342245989 0.22695035461 NC_045512.2:7782-7835 + 7782 7835 18 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7781;54;0&p=30&e=30&w=0&f=7782-7835", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7782-7835&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -20.4634833333 1.0 1.48148148148 -13.81285125 -14.3185111111 -6.14497222219 NA 0.855441966466 0.890405339411 NA 0.519137229367 0.474829887677 0.314814814815 0.0 0.0 NC_045512.2:25201-25284 + 25201 25284 28 NotMaximal AUG Canonical S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25200;84;0&p=30&e=30&w=0&f=25201-25284", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25201-25284&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -20.489525 1.0 2.10714285714 -9.72384237288 -18.42145 -2.068075 0.306804492919 0.424925931955 0.866342178089 0.0 1.0 0.333954094091 0.404761904762 0.0 0.309523809524 NC_045512.2:7410-7487 - 7410 7487 26 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7409;78;0&s=-&p=30&e=30&w=0&f=7410-7487-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7410-7487&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -20.4928692308 1.0 1.58974358974 -12.8906758065 -13.7102461538 -6.78262307695 NA 1.0 0.094488035162 NA 0.404707797493 0.094488035162 0.307692307692 0.577777777778 0.0 NC_045512.2:846-878 + 846 878 11 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;845;33;0&p=30&e=30&w=0&f=846-878", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:846-878&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -20.5091181818 1.0 1.63636363636 -12.53335 -14.4390727273 -6.07004545453 0.989483965489 0.0894774540127 0.912111346248 0.0894774540127 1.0 0.0894774540127 0.454545454545 0.0 0.0 NC_045512.2:24819-24872 + 24819 24872 18 NotMaximal AAG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24818;54;0&p=30&e=30&w=0&f=24819-24872", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24819-24872&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -20.52335 1.0 1.46296296296 -14.0286189873 -8.7325 -11.79085 NA 0.085388246785 0.890405339411 NA 1.0 0.085388246785 0.444444444444 0.375 1.0 NC_045512.2:8256-8312 + 8256 8312 19 Maximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8255;57;0&p=30&e=30&w=0&f=8256-8312", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8256-8312&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -20.5557789474 1.0 1.17543859649 -17.4877522388 -8.78116842105 -11.7746105263 NA 1.0 0.43524987791 NA 0.912111346248 0.251284388735 0.315789473684 0.703703703704 0.0 NC_045512.2:27994-28038 + 27994 28038 15 Maximal AUG Canonical ORF8 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27993;45;0&p=30&e=30&w=0&f=27994-28038", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27994-28038&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -20.5653466667 0.6816 4.48248255856 -4.58793679574 -21.5861866667 1.02083999997 0.094488035162 0.0174377340062 0.697756796354 0.0174377340062 0.605039882793 0.0174377340062 0.355555555556 0.714285714286 0.0 NC_045512.2:12658-12687 + 12658 12687 10 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12657;30;0&p=30&e=30&w=0&f=12658-12687", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12658-12687&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -20.57603 1.0 1.03333333333 -19.9122870968 -11.03418 -9.54185 NA 0.957711216018 0.917157740518 NA 0.706439850236 0.587397037278 0.4 0.0 0.0 NC_045512.2:2256-2309 + 2256 2309 18 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2255;54;0&p=30&e=30&w=0&f=2256-2309", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:2256-2309&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -20.5818722222 1.0 2.55555555556 -8.05377608695 -10.7500277778 -9.83184444442 NA 0.094488035162 0.390053719681 NA 0.094488035162 0.094488035162 0.388888888889 0.0 0.0 NC_045512.2:14157-14210 + 14157 14210 18 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14156;54;0&p=30&e=30&w=0&f=14157-14210", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14157-14210&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -20.5834 1.0 1.72222222222 -11.9516516129 -26.5598777778 5.97647777778 NA 0.0174377340062 0.400856259157 NA 0.888233762006 0.0 0.388888888889 0.0 0.0 NC_045512.2:21032-21139 + 21032 21139 36 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21031;108;0&p=30&e=30&w=0&f=21032-21139", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21032-21139&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -20.5869583333 1.0 1.56481481481 -13.1561627219 -15.7758361111 -4.81112222219 NA 0.658831189972 0.390053719681 NA 0.853127136578 0.094488035162 0.305555555556 0.397058823529 0.0 NC_045512.2:7918-7998 + 7918 7998 27 Maximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7917;81;0&p=30&e=30&w=0&f=7918-7998", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7918-7998&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -20.614162963 1.0 1.82716049383 -11.2820756757 -25.4918148148 4.87765185181 NA 0.368347712844 0.0174377340062 NA 0.50251342992 0.0174377340062 0.395061728395 0.321428571429 0.0 NC_045512.2:11772-11828 + 11772 11828 19 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;11771;57;0&p=30&e=30&w=0&f=11772-11828", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:11772-11828&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -20.6215842105 1.0 1.24561403509 -16.555356338 -20.1237631579 -0.497821052605 0.929135601498 0.0174377340062 0.905254761517 0.0174377340062 1.0 0.0174377340062 0.385964912281 0.0 0.0 NC_045512.2:3830-3859 - 3830 3859 10 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3829;30;0&s=-&p=30&e=30&w=0&f=3830-3859-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3830-3859&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -20.62214 0.905 3.01232375826 -6.84592416185 -28.49587 7.87373 NA 0.387302620869 0.802445059417 NA 0.094488035162 0.0 0.333333333333 0.0 0.0 NC_045512.2:7410-7538 - 7410 7538 43 Maximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7409;129;0&s=-&p=30&e=30&w=0&f=7410-7538-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7410-7538&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -20.6271046512 1.0 1.45736434109 -14.1537047873 -18.1207116279 -2.50639302329 NA 1.0 0.094488035162 NA 0.706439850236 0.094488035162 0.325581395349 0.930288461538 0.0 NC_045512.2:24606-24740 + 24606 24740 45 Maximal CUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24605;135;0&p=30&e=30&w=0&f=24606-24740", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24606-24740&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -20.63586 1.0 1.31111111111 -15.7392152542 -13.1489266667 -7.48693333333 NA 0.343053882468 0.542353898747 NA 0.905007325411 0.0174377340062 0.422222222222 0.0 0.659259259259 NC_045512.2:25847-25891 - 25847 25891 15 Maximal UUG NearCognate ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25846;45;0&s=-&p=30&e=30&w=0&f=25847-25891-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25847-25891&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -20.6451133333 1.0 1.73333333333 -11.9106423077 -23.09822 2.4531066667 NA 0.301797167508 0.094488035162 NA 0.688067719355 0.094488035162 0.288888888889 1.125 0.0 NC_045512.2:3009-3263 - 3009 3263 85 Maximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3008;255;0&s=-&p=30&e=30&w=0&f=3009-3263-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3009-3263&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -20.6500105882 0.8607 2.62468505869 -7.86761463811 -23.2543011765 2.60429058827 NA 0.094488035162 0.0 NA 0.0174377340062 0.0 0.403921568627 0.100314712825 0.0 NC_045512.2:6954-7004 - 6954 7004 17 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6953;51;0&s=-&p=30&e=30&w=0&f=6954-7004-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6954-7004&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -20.6697647059 1.0 1.52941176471 -13.5148461539 -15.7583882353 -4.91137647061 NA 0.0174377340062 0.620664170601 NA 0.368347712844 0.0174377340062 0.274509803922 0.0 0.0 NC_045512.2:1846-1920 + 1846 1920 25 Maximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1845;75;0&p=30&e=30&w=0&f=1846-1920", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1846-1920&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -20.677312 1.0 2.18666666667 -9.45608780488 -18.497432 -2.17988 NA 0.54092462966 0.658219111183 NA 0.867022627381 0.402086928211 0.44 0.865384615385 0.0 NC_045512.2:489-530 + 489 530 14 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;488;42;0&p=30&e=30&w=0&f=489-530", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:489-530&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -20.7170928571 1.0 2.90476190476 -7.13211393441 -14.2593785714 -6.45771428567 0.754022464594 0.27465733355 0.612954582452 0.0174377340062 1.0 0.0174377340062 0.5 0.388888888889 0.0 NC_045512.2:22724-22756 - 22724 22756 11 Maximal AUC NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22723;33;0&s=-&p=30&e=30&w=0&f=22724-22756-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22724-22756&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -20.7272818182 1.0 2.18181818182 -9.50000416668 -22.3381 1.6108181818 NA 0.0174377340062 0.793495034999 NA 0.875461500895 0.0 0.333333333333 0.0 0.0 NC_045512.2:25487-25525 - 25487 25525 13 Maximal AUC NearCognate ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25486;39;0&s=-&p=30&e=30&w=0&f=25487-25525-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25487-25525&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -20.7348076923 1.0 1.25641025641 -16.5032142857 -13.6158769231 -7.11893076922 NA 1.0 0.860459059092 NA 1.0 0.860459059092 0.512820512821 1.39285714286 0.923076923077 NC_045512.2:19223-19300 + 19223 19300 26 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19222;78;0&p=30&e=30&w=0&f=19223-19300", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19223-19300&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -20.7370884615 1.0 1.67948717949 -12.3472740458 -14.6199653846 -6.11712307688 NA 0.768324922676 0.364759889305 NA 1.0 0.0174377340062 0.397435897436 0.0 0.0 NC_045512.2:7410-7523 - 7410 7523 38 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7409;114;0&s=-&p=30&e=30&w=0&f=7410-7523-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7410-7523&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -20.7414947368 1.0 1.4649122807 -14.1588646706 -17.9811631579 -2.76033157891 NA 1.0 0.094488035162 NA 0.994966628683 0.094488035162 0.315789473684 0.74025974026 0.0 NC_045512.2:7410-7532 - 7410 7532 41 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7409;123;0&s=-&p=30&e=30&w=0&f=7410-7532-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7410-7532&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -20.7528658537 1.0 1.49593495935 -13.8728396739 -18.8621536585 -1.89071219516 NA 1.0 0.094488035162 NA 0.548012371805 0.094488035162 0.325203252033 0.984 0.0 NC_045512.2:13596-13625 + 13596 13625 10 Maximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13595;30;0&p=30&e=30&w=0&f=13596-13625", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13596-13625&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -20.75735 1.0 1.26666666667 -16.3873815789 -22.25463 1.49728 NA 0.0174377340062 0.24889142113 NA 1.0 0.0174377340062 0.433333333333 1.5 0.133333333333 NC_045512.2:1404-1442 + 1404 1442 13 Maximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1403;39;0&p=30&e=30&w=0&f=1404-1442", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1404-1442&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -20.8112769231 1.0 1.71794871795 -12.1140268657 -9.56203846154 -11.2492384616 NA 0.094488035162 1.0 NA 0.640673937815 0.094488035162 0.435897435897 0.541666666667 0.25641025641 NC_045512.2:27326-27373 - 27326 27373 16 Maximal UUG NearCognate ORF6 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27325;48;0&s=-&p=30&e=30&w=0&f=27326-27373-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27326-27373&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -20.82404375 0.9945 1.46761167925 -14.1890692507 -16.06894375 -4.7551 NA 0.912111346248 0.094488035162 NA 0.094488035162 0.094488035162 0.3125 0.0 0.0 NC_045512.2:5148-5213 + 5148 5213 22 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5147;66;0&p=30&e=30&w=0&f=5148-5213", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5148-5213&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -20.8339045455 1.0 1.42424242424 -14.6280606383 -16.4223090909 -4.41159545459 NA 1.0 0.706439850236 NA 0.094488035162 0.094488035162 0.439393939394 0.0 0.0 NC_045512.2:7036-7086 + 7036 7086 17 Maximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7035;51;0&p=30&e=30&w=0&f=7036-7086", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7036-7086&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -20.8882529412 1.0 2.05882352941 -10.1457228572 -17.2104705882 -3.67778235296 NA 1.0 0.094488035162 NA 0.630349991861 0.094488035162 0.43137254902 0.0 0.529411764706 NC_045512.2:19229-19300 + 19229 19300 24 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19228;72;0&p=30&e=30&w=0&f=19229-19300", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19229-19300&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -20.9022583333 1.0 1.69444444444 -12.3357590164 -14.540525 -6.3617333333 NA 0.768324922676 0.364759889305 NA 0.986674263389 0.0174377340062 0.402777777778 0.0 0.0 NC_045512.2:10506-10553 - 10506 10553 16 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10505;48;0&s=-&p=30&e=30&w=0&f=10506-10553-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10506-10553&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -20.9080625 1.0 1.5 -13.9387083333 -14.163925 -6.7441375 NA 1.0 1.0 NA 0.364759889305 0.364759889305 0.333333333333 0.0 0.0416666666667 NC_045512.2:25616-25654 + 25616 25654 13 Maximal AGG NearCognate ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25615;39;0&p=30&e=30&w=0&f=25616-25654", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25616-25654&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -20.9206230769 1.0 2.89743589744 -7.22039203539 -17.2632230769 -3.65739999998 NA 0.769923490151 0.873009930002 NA 0.706439850236 0.568562591568 0.410256410256 0.0 0.0 NC_045512.2:27925-27984 - 27925 27984 20 Maximal AUG Canonical ORF8 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27924;60;0&s=-&p=30&e=30&w=0&f=27925-27984-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27925-27984&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -20.939 0.6906 5.30648778598 -3.94592446916 -18.914085 -2.024915 0.33694937327 0.094488035162 0.829744424548 0.0174377340062 0.618186553801 0.094488035162 0.383333333333 0.0 0.0833333333333 NC_045512.2:8982-9080 + 8982 9080 33 Maximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8981;99;0&p=30&e=30&w=0&f=8982-9080", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8982-9080&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -20.9457454545 1.0 1.30303030303 -16.0746418604 -14.3692030303 -6.5765424242 NA 0.529425362201 0.764278040046 NA 0.884212925281 0.497939117695 0.373737373737 0.0 0.0 NC_045512.2:23814-23849 + 23814 23849 12 NotMaximal AUC NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23813;36;0&p=30&e=30&w=0&f=23814-23849", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23814-23849&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -20.9559916667 1.0 2.41666666667 -8.6714448276 -15.1039333333 -5.85205833337 NA 0.778987465408 1.0 NA 0.624951977861 0.515357317272 0.305555555556 0.0 0.0 NC_045512.2:19196-19300 + 19196 19300 35 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19195;105;0&p=30&e=30&w=0&f=19196-19300", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19196-19300&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -20.9670142857 1.0 1.57142857143 -13.3426454545 -13.2342914286 -7.73272285713 NA 0.768324922676 0.364759889305 NA 0.638176786586 0.0174377340062 0.390476190476 0.257352941176 0.0 NC_045512.2:17999-18055 - 17999 18055 19 Maximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17998;57;0&s=-&p=30&e=30&w=0&f=17999-18055-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17999-18055&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -20.9752736842 1.0 1.22807017544 -17.0798657143 -21.0986736842 0.123400000011 NA 0.890405339411 0.0174377340062 NA 0.364759889305 0.0174377340062 0.385964912281 0.475 0.0 NC_045512.2:24210-24254 - 24210 24254 15 Maximal AUG Canonical S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24209;45;0&s=-&p=30&e=30&w=0&f=24210-24254-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24210-24254&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -20.9796 1.0 1.88888888889 -11.1068470588 -19.28972 -1.68988 0.452642031581 0.813797818655 0.912111346248 0.427348201205 1.0 0.725909164903 0.466666666667 0.0 0.0 NC_045512.2:1876-1920 + 1876 1920 15 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1875;45;0&p=30&e=30&w=0&f=1876-1920", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1876-1920&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -20.9947 1.0 2.06666666667 -10.1587258065 -13.31682 -7.67788 NA 0.54092462966 0.658219111183 NA 0.621927397037 0.275852189484 0.488888888889 1.15384615385 0.0 NC_045512.2:27467-27553 - 27467 27553 29 NotMaximal AUU NearCognate ORF7a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27466;87;0&s=-&p=30&e=30&w=0&f=27467-27553-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27467-27553&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -20.9948 1.0 1.47126436782 -14.269903125 -20.6738724138 -0.320927586207 NA 0.974706169624 0.61680286505 NA 0.706439850236 0.591509034674 0.390804597701 0.310714285714 0.0 NC_045512.2:10420-10461 + 10420 10461 14 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10419;42;0&p=30&e=30&w=0&f=10420-10461", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10420-10461&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -20.9977714286 1.0 1.7380952381 -12.0809095891 -27.6997714286 6.70199999997 NA 0.905577079603 0.421305551034 NA 0.67105323132 0.216890769982 0.404761904762 0.0 0.0 NC_045512.2:5988-6035 - 5988 6035 16 Maximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5987;48;0&s=-&p=30&e=30&w=0&f=5988-6035-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5988-6035&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -21.0004875 0.9813 1.44366458089 -14.5466528569 -20.23290625 -0.76758125 NA 0.094488035162 0.594969884421 NA 0.545723587824 0.094488035162 0.416666666667 0.64 0.0 NC_045512.2:6024-6086 + 6024 6086 21 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6023;63;0&p=30&e=30&w=0&f=6024-6086", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6024-6086&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -21.0086095238 0.9813 1.69842891869 -12.3694370089 -15.123447619 -5.88516190475 NA 0.697821911118 0.928744912909 NA 0.0174377340062 0.0174377340062 0.285714285714 1.575 0.0 NC_045512.2:3369-3419 + 3369 3419 17 Maximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3368;51;0&p=30&e=30&w=0&f=3369-3419", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3369-3419&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -21.0161058824 1.0 1.72549019608 -12.1797886364 -16.0812 -4.9349058824 NA 0.094488035162 0.592114601986 NA 0.706439850236 0.0174377340062 0.333333333333 0.0 0.0 NC_045512.2:10512-10583 + 10512 10583 24 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10511;72;0&p=30&e=30&w=0&f=10512-10583", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10512-10583&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -21.0185208333 1.0 1.34722222222 -15.6013762886 -15.9740208333 -5.04449999997 NA 0.912111346248 1.0 NA 0.43277226111 0.43277226111 0.402777777778 0.0 0.0 NC_045512.2:20913-20957 + 20913 20957 15 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20912;45;0&p=30&e=30&w=0&f=20913-20957", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20913-20957&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -21.0240733333 1.0 1.6 -13.1400458333 -19.8901666667 -1.13390666663 NA 0.67340061859 0.64493569917 NA 0.0174377340062 0.0174377340062 0.511111111111 1.03846153846 0.0 NC_045512.2:1699-1752 + 1699 1752 18 Maximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1698;54;0&p=30&e=30&w=0&f=1699-1752", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1699-1752&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -21.0516444444 1.0 1.98148148148 -10.6241943925 -22.6675166667 1.61587222227 NA 0.637584242227 0.094488035162 NA 0.620071626241 0.0174377340062 0.37037037037 0.0 0.0 NC_045512.2:19887-19934 + 19887 19934 16 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19886;48;0&p=30&e=30&w=0&f=19887-19934", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19887-19934&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -21.05190625 1.0 1.77083333333 -11.8881352941 -32.873425 11.82151875 NA 0.950799283738 0.890405339411 NA 0.670542080417 0.670542080417 0.375 0.0 0.0 NC_045512.2:5451-5495 - 5451 5495 15 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5450;45;0&s=-&p=30&e=30&w=0&f=5451-5495-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5451-5495&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -21.06036 1.0 1.51111111111 -13.9370029412 -17.72188 -3.33848 NA 0.706439850236 0.556500081393 NA 0.330971837864 0.094488035162 0.311111111111 0.0 0.0 NC_045512.2:2564-2746 - 2564 2746 61 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2563;183;0&s=-&p=30&e=30&w=0&f=2564-2746-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:2564-2746&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -21.1034163934 1.0 2.40983606557 -8.75719999998 -26.932557377 5.82914098365 NA 0.25216343806 0.094488035162 NA 0.262939931629 0.094488035162 0.420765027322 0.37044534413 0.0 NC_045512.2:24792-24872 + 24792 24872 27 NotMaximal CUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24791;81;0&p=30&e=30&w=0&f=24792-24872", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24792-24872&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -21.1474259259 1.0 1.54320987654 -13.703532 -11.2517851852 -9.89564074071 NA 0.085388246785 0.890405339411 NA 0.621797167508 0.0 0.456790123457 0.236842105263 0.864197530864 NC_045512.2:23117-23182 - 23117 23182 22 NotMaximal AUU NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23116;66;0&s=-&p=30&e=30&w=0&f=23117-23182-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23117-23182&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -21.1644590909 1.0 2.45454545455 -8.6225574074 -27.8195772727 6.65511818183 NA 0.803724564545 0.575311736936 NA 0.611144391991 0.369640240925 0.348484848485 0.0 0.0 NC_045512.2:1809-1853 + 1809 1853 15 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1808;45;0&p=30&e=30&w=0&f=1809-1853", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1809-1853&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -21.1653866667 1.0 2.77777777778 -7.61953920001 -17.03636 -4.1290266667 NA 0.706439850236 0.585293830376 NA 0.268679798144 0.0894774540127 0.355555555556 0.0 0.0 NC_045512.2:27503-27538 + 27503 27538 12 NotMaximal CUG NearCognate ORF7a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27502;36;0&p=30&e=30&w=0&f=27503-27538", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27503-27538&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -21.1708416667 1.0 1.41666666667 -14.9441235294 -14.6939083333 -6.47693333337 NA 0.094488035162 1.0 NA 0.428289109556 0.0174377340062 0.472222222222 0.545454545455 0.0 NC_045512.2:7410-7520 - 7410 7520 37 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7409;111;0&s=-&p=30&e=30&w=0&f=7410-7520-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7410-7520&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -21.1735189189 1.0 1.47747747748 -14.3308573171 -16.9399810811 -4.23353783782 NA 1.0 0.094488035162 NA 0.438417711216 0.094488035162 0.315315315315 0.776223776224 0.0 NC_045512.2:1575-1736 + 1575 1736 54 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1574;162;0&p=30&e=30&w=0&f=1575-1736", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1575-1736&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -21.1827259259 1.0 1.93209876543 -10.9635833866 -14.7162388889 -6.46648703701 NA 0.706439850236 0.0174377340062 NA 0.390053719681 0.0174377340062 0.37037037037 0.363636363636 0.0 NC_045512.2:4755-4832 + 4755 4832 26 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4754;78;0&p=30&e=30&w=0&f=4755-4832", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4755-4832&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -21.1833730769 1.0 1.85897435897 -11.3951937931 -17.0593153846 -4.12405769228 NA 0.912111346248 0.455663356666 NA 1.0 0.455663356666 0.371794871795 0.0 0.0 NC_045512.2:25210-25284 + 25210 25284 25 NotMaximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25209;75;0&p=30&e=30&w=0&f=25210-25284", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25210-25284&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -21.185744 1.0 2.08 -10.1854538462 -18.79476 -2.390984 NA 0.424925931955 0.866342178089 NA 1.0 0.333954094091 0.413333333333 0.0 0.346666666667 NC_045512.2:24633-24740 + 24633 24740 36 NotMaximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24632;108;0&p=30&e=30&w=0&f=24633-24740", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24633-24740&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -21.1972555556 1.0 1.39814814815 -15.1609509934 -14.9732472222 -6.22400833338 NA 0.343053882468 0.542353898747 NA 0.99726517988 0.0174377340062 0.416666666667 0.0 0.574074074074 NC_045512.2:8262-8312 + 8262 8312 17 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8261;51;0&p=30&e=30&w=0&f=8262-8312", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8262-8312&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -21.2018176471 1.0 1.17647058824 -18.021545 -8.55849411765 -12.6433235295 NA 1.0 0.811704378968 NA 0.229158391665 0.229158391665 0.333333333333 0.708333333333 0.0 NC_045512.2:2564-2698 - 2564 2698 45 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2563;135;0&s=-&p=30&e=30&w=0&f=2564-2698-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:2564-2698&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -21.2154533333 1.0 2.47407407407 -8.57510838322 -29.3633977778 8.14794444448 NA 0.25216343806 0.094488035162 NA 0.912111346248 0.094488035162 0.407407407407 0.357142857143 0.0 NC_045512.2:7921-7998 + 7921 7998 26 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7920;78;0&p=30&e=30&w=0&f=7921-7998", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7921-7998&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -21.2302269231 1.0 1.84615384615 -11.49970625 -26.2420769231 5.01184999998 NA 0.368347712844 0.0174377340062 NA 0.094488035162 0.0174377340062 0.397435897436 0.327731092437 0.0 NC_045512.2:1569-1736 + 1569 1736 56 Maximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1568;168;0&p=30&e=30&w=0&f=1569-1736", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1569-1736&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -21.2319321429 1.0 1.91071428571 -11.1120392524 -14.6538642857 -6.57806785719 NA 0.706439850236 0.0174377340062 NA 0.974706169624 0.0174377340062 0.369047619048 0.352941176471 0.0 NC_045512.2:19979-20020 - 19979 20020 14 Maximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19978;42;0&s=-&p=30&e=30&w=0&f=19979-20020-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19979-20020&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -21.2407428571 1.0 1.54761904762 -13.7247876923 -23.13065 1.8899071429 NA 1.0 0.990900211623 NA 0.549682565522 0.549682565522 0.357142857143 0.0 0.0 NC_045512.2:3830-3868 - 3830 3868 13 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3829;39;0&s=-&p=30&e=30&w=0&f=3830-3868-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3830-3868&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -21.2416153846 0.9264 3.13982609049 -6.76522035693 -27.1555692308 5.91395384617 NA 0.387302620869 0.618479570243 NA 0.750372782028 0.0 0.333333333333 0.0 0.0 NC_045512.2:7051-7086 + 7051 7086 12 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7050;36;0&p=30&e=30&w=0&f=7051-7086", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7051-7086&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -21.2537416667 1.0 2.25 -9.44610740742 -17.191125 -4.0626166667 NA 1.0 0.094488035162 NA 1.0 0.094488035162 0.416666666667 0.0 0.527777777778 NC_045512.2:10521-10583 + 10521 10583 21 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10520;63;0&p=30&e=30&w=0&f=10521-10583", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10521-10583&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -21.2687857143 1.0 1.38095238095 -15.4015344828 -17.4978666667 -3.77091904763 NA 0.912111346248 1.0 NA 0.390053719681 0.390053719681 0.428571428571 0.0 0.0 NC_045512.2:20898-20957 + 20898 20957 20 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20897;60;0&p=30&e=30&w=0&f=20898-20957", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20898-20957&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -21.27621 1.0 1.65 -12.8946727273 -18.960325 -2.315885 NA 0.67340061859 0.64493569917 NA 0.541696239622 0.357730750448 0.483333333333 0.882352941176 0.0 NC_045512.2:22838-22906 - 22838 22906 23 NotMaximal AUU NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22837;69;0&s=-&p=30&e=30&w=0&f=22838-22906-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22838-22906&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -21.2848391304 0.9164 4.5202107812 -4.7088156196 -30.5698826087 9.2850434783 NA 0.434598730262 0.445173368061 NA 0.620081393456 0.254738727006 0.376811594203 0.43125 0.0 NC_045512.2:3830-3886 - 3830 3886 19 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3829;57;0&s=-&p=30&e=30&w=0&f=3830-3886-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3830-3886&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -21.2957473684 0.9398 3.23514810398 -6.58261899731 -24.3692157895 3.07346842107 NA 0.387302620869 0.586478919095 NA 0.368347712844 0.0 0.368421052632 0.581632653061 0.0 NC_045512.2:8842-8895 + 8842 8895 18 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8841;54;0&p=30&e=30&w=0&f=8842-8895", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8842-8895&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -21.2973222222 1.0 1.98148148148 -10.7481813084 -22.5266333333 1.22931111113 NA 0.47565684519 0.612918769331 NA 0.612918769331 0.094488035162 0.5 0.920454545455 0.0 NC_045512.2:7143-7172 - 7143 7172 10 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7142;30;0&s=-&p=30&e=30&w=0&f=7143-7172-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7143-7172&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -21.29857 1.0 2.03333333333 -10.4747065574 -13.75428 -7.54429 NA 0.390053719681 1.0 NA 0.783447826795 0.094488035162 0.366666666667 0.0 0.0 NC_045512.2:4998-5027 - 4998 5027 10 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4997;30;0&s=-&p=30&e=30&w=0&f=4998-5027-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4998-5027&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -21.32211 1.0 1.5 -14.21474 -14.74408 -6.57803 NA 0.97632101579 0.292147159368 NA 0.229158391665 0.229158391665 0.5 0.555555555556 0.0 NC_045512.2:22838-22909 - 22838 22909 24 NotMaximal AUA NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22837;72;0&s=-&p=30&e=30&w=0&f=22838-22909-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22838-22909&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -21.32635 0.9111 4.55698767237 -4.67992268869 -29.6639708333 8.33762083333 NA 0.434598730262 0.646576591242 NA 0.307038906072 0.085388246785 0.361111111111 0.45 0.0 NC_045512.2:24837-24872 + 24837 24872 12 NotMaximal AAG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24836;36;0&p=30&e=30&w=0&f=24837-24872", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24837-24872&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -21.3416583333 1.0 1.33333333333 -16.00624375 -11.5983333333 -9.74332499997 NA 0.085388246785 0.890405339411 NA 1.0 0.085388246785 0.416666666667 0.0 1.0 NC_045512.2:9639-9668 + 9639 9668 10 Maximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9638;30;0&p=30&e=30&w=0&f=9639-9668", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9639-9668&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -21.35222 1.0 1.36666666667 -15.6235756098 -15.99145 -5.36077 NA 0.477942373433 0.912111346248 NA 0.380986488686 0.094488035162 0.366666666667 0.0 0.0 NC_045512.2:2564-2680 - 2564 2680 39 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2563;117;0&s=-&p=30&e=30&w=0&f=2564-2680-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:2564-2680&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -21.3574 1.0 2.58974358974 -8.24691683168 -28.3518102564 6.99441025641 NA 0.25216343806 0.499921862282 NA 0.094488035162 0.094488035162 0.42735042735 0.3744 0.0 NC_045512.2:6687-6731 + 6687 6731 15 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6686;45;0&p=30&e=30&w=0&f=6687-6731", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6687-6731&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -21.37396 1.0 3.02222222222 -7.07226617647 -14.22662 -7.14734 1.0 0.094488035162 0.368347712844 0.094488035162 1.0 0.094488035162 0.311111111111 0.0 0.0 NC_045512.2:12579-12629 + 12579 12629 17 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12578;51;0&p=30&e=30&w=0&f=12579-12629", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12579-12629&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -21.3867352941 1.0 1.50980392157 -14.1652402597 -16.1490352941 -5.23769999998 NA 0.26510174182 0.685713820609 NA 0.962279016767 0.26510174182 0.254901960784 0.0 0.0 NC_045512.2:27925-28002 - 27925 28002 26 Maximal ACG NearCognate ORF8 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27924;78;0&s=-&p=30&e=30&w=0&f=27925-28002-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27925-28002&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -21.3869923077 0.6928 5.21323478086 -4.10244180566 -18.3517538462 -3.03523846155 NA 0.094488035162 0.829744424548 NA 0.694077812144 0.094488035162 0.397435897436 0.333333333333 0.0641025641026 NC_045512.2:23427-23510 + 23427 23510 28 NotMaximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23426;84;0&p=30&e=30&w=0&f=23427-23510", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23427-23510&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -21.3898214286 1.0 3.03571428571 -7.04605882354 -21.2792678571 -0.110553571457 NA 0.460371154159 0.445095230343 NA 0.266404037115 0.0174377340062 0.392857142857 0.622222222222 0.0 NC_045512.2:2826-2894 - 2826 2894 23 Maximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2825;69;0&s=-&p=30&e=30&w=0&f=2826-2894-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:2826-2894&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -21.3940652174 1.0 1.86956521739 -11.4433372093 -19.0895434783 -2.30452173914 NA 1.0 0.523936187531 NA 0.785144066417 0.355660100928 0.463768115942 0.575 0.0 NC_045512.2:21914-22042 - 21914 22042 43 NotMaximal AUA NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21913;129;0&s=-&p=30&e=30&w=0&f=21914-22042-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21914-22042&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -21.4027 0.8849 4.89311233837 -4.37404631653 -35.6983348837 14.2956348837 NA 0.0174377340062 0.73356666124 NA 0.779622334364 0.0 0.286821705426 0.400621118012 0.0 NC_045512.2:1815-1880 - 1815 1880 22 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1814;66;0&s=-&p=30&e=30&w=0&f=1815-1880-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1815-1880&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -21.4036136364 1.0 2.39393939394 -8.94075000002 -21.6610045455 0.257390909055 NA 0.424593846655 0.526114276412 NA 0.887605404525 0.0803776656357 0.378787878788 0.0 0.0 NC_045512.2:5277-5306 + 5277 5306 10 Maximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5276;30;0&p=30&e=30&w=0&f=5277-5306", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5277-5306&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -21.4043 1.0 1.46666666667 -14.5938409091 -13.25261 -8.15169 NA 0.673322480873 1.0 NA 0.777535406153 0.593569916979 0.366666666667 0.0 0.0 NC_045512.2:25985-26047 + 25985 26047 21 Maximal AAG NearCognate ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25984;63;0&p=30&e=30&w=0&f=25985-26047", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25985-26047&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -21.4056095238 1.0 1.92063492063 -11.1450694215 -12.3184047619 -9.0872047619 NA 0.094488035162 0.739768842585 NA 1.0 0.094488035162 0.365079365079 0.0 0.0 NC_045512.2:24210-24242 - 24210 24242 11 NotMaximal AUG Canonical S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24209;33;0&s=-&p=30&e=30&w=0&f=24210-24242-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24210-24242&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -21.4066363636 1.0 2.15151515152 -9.94956338026 -19.3985272727 -2.00810909087 0.0 0.813797818655 0.912111346248 0.0 0.364759889305 0.364759889305 0.545454545455 0.0 0.0 NC_045512.2:24636-24740 + 24636 24740 35 NotMaximal CUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24635;105;0&p=30&e=30&w=0&f=24636-24740", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24636-24740&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -21.4098314286 1.0 1.42857142857 -14.986882 -15.4718342857 -5.93799714289 NA 0.343053882468 0.542353898747 NA 1.0 0.0174377340062 0.419047619048 0.0 0.561904761905 NC_045512.2:20864-20911 + 20864 20911 16 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20863;48;0&p=30&e=30&w=0&f=20864-20911", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20864-20911&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -21.41221875 1.0 1.64583333333 -13.0099556962 -18.42030625 -2.9919125 NA 0.364759889305 0.772121113462 NA 0.718023766889 0.0174377340062 0.4375 0.0 0.0 NC_045512.2:20417-20458 + 20417 20458 14 Maximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20416;42;0&p=30&e=30&w=0&f=20417-20458", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20417-20458&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -21.46385 1.0 1.30952380952 -16.3905763636 -8.93592857143 -12.5279214286 NA 1.0 0.0174377340062 NA 0.997766563568 0.0174377340062 0.261904761905 0.0 0.0 NC_045512.2:2105-2191 - 2105 2191 29 Maximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2104;87;0&s=-&p=30&e=30&w=0&f=2105-2191-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:2105-2191&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -21.4652793103 1.0 2.86206896552 -7.49991686745 -23.1916896552 1.72641034487 NA 0.413120625102 0.47036952629 NA 0.718967930978 0.094488035162 0.379310344828 0.327067669173 0.0 NC_045512.2:21150-21191 + 21150 21191 14 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21149;42;0&p=30&e=30&w=0&f=21150-21191", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21150-21191&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -21.4832071429 1.0 1.54761904762 -13.8814569231 -25.4465928571 3.96338571424 NA 0.58774540127 0.864115253134 NA 0.691616474035 0.39301318574 0.404761904762 0.6 0.0 NC_045512.2:8988-9080 + 8988 9080 31 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8987;93;0&p=30&e=30&w=0&f=8988-9080", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8988-9080&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -21.4867483871 1.0 1.32258064516 -16.2460780488 -15.2684096774 -6.21833870968 NA 0.529425362201 0.764278040046 NA 0.960559986977 0.469884421293 0.365591397849 0.0 0.0 NC_045512.2:4788-4832 + 4788 4832 15 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4787;45;0&p=30&e=30&w=0&f=4788-4832", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4788-4832&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -21.5017066667 1.0 1.95555555556 -10.9951909091 -15.28238 -6.2193266667 NA 0.912111346248 1.0 NA 0.520195344294 0.520195344294 0.4 0.0 0.0 NC_045512.2:3757-3798 + 3757 3798 14 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3756;42;0&p=30&e=30&w=0&f=3757-3798", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3757-3798&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -21.5017928571 1.0 2.33333333333 -9.21505408161 -27.3154285714 5.81363571433 NA 0.867156112649 0.544701286017 NA 1.0 0.520195344294 0.380952380952 0.65625 0.0 NC_045512.2:24963-25004 - 24963 25004 14 Maximal AUG Canonical S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24962;42;0&s=-&p=30&e=30&w=0&f=24963-25004-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24963-25004&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -21.5076285714 1.0 1.5 -14.3384190476 -21.6502428571 0.142614285743 0.855500569754 1.0 1.0 0.855500569754 1.0 1.0 0.357142857143 0.0 0.785714285714 NC_045512.2:8102-8134 - 8102 8134 11 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8101;33;0&s=-&p=30&e=30&w=0&f=8102-8134-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8102-8134&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -21.5104636364 1.0 2.27272727273 -9.46460400002 -41.2763 19.7658363636 NA 0.292749470943 0.80545336155 NA 0.094488035162 0.094488035162 0.424242424242 0.0 0.0 NC_045512.2:24447-24491 + 24447 24491 15 Maximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24446;45;0&p=30&e=30&w=0&f=24447-24491", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24447-24491&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -21.5177733333 1.0 1.4 -15.3698380952 -13.31062 -8.2071533333 NA 1.0 0.635184763145 NA 0.912111346248 0.635184763145 0.311111111111 0.0 0.511111111111 NC_045512.2:6777-6857 + 6777 6857 27 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6776;81;0&p=30&e=30&w=0&f=6777-6857", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6777-6857&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -21.525662963 1.0 1.92592592593 -11.1767865385 -20.5415925926 -0.984070370407 NA 0.54829887677 0.648028650497 NA 0.912111346248 0.22944489663 0.283950617284 0.642857142857 0.0493827160494 NC_045512.2:1578-1736 + 1578 1736 53 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1577;159;0&p=30&e=30&w=0&f=1578-1736", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1578-1736&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -21.526454717 1.0 1.94968553459 -11.0409880645 -14.9015113208 -6.62494339625 NA 0.706439850236 0.0174377340062 NA 0.458622822725 0.0174377340062 0.364779874214 0.379928315412 0.0 NC_045512.2:2564-2671 - 2564 2671 36 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2563;108;0&s=-&p=30&e=30&w=0&f=2564-2671-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:2564-2671&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -21.5371361111 1.0 2.59259259259 -8.30718107142 -28.6481472222 7.11101111112 NA 0.25216343806 0.499921862282 NA 0.094488035162 0.094488035162 0.425925925926 0.409090909091 0.0 NC_045512.2:24348-24437 + 24348 24437 30 NotMaximal GUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24347;90;0&p=30&e=30&w=0&f=24348-24437", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24348-24437&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -21.5422933333 1.0 1.83333333333 -11.7503418182 -17.30519 -4.2371033333 NA 0.854488035162 0.565577079603 NA 1.0 0.541071137881 0.411111111111 0.0 0.433333333333 NC_045512.2:19610-19639 - 19610 19639 10 Maximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19609;30;0&s=-&p=30&e=30&w=0&f=19610-19639-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19610-19639&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -21.55492 1.0 1.26666666667 -17.0170421053 -25.08955 3.53463 NA 1.0 0.827328666775 NA 1.0 0.827328666775 0.366666666667 0.0 0.0 NC_045512.2:8214-8252 + 8214 8252 13 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8213;39;0&p=30&e=30&w=0&f=8214-8252", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8214-8252&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -21.5756692308 1.0 1.61538461538 -13.3563666667 -19.5901384615 -1.98553076926 0.900553475501 0.678339573498 1.0 0.578893048999 1.0 0.678339573498 0.307692307692 0.0 0.0 NC_045512.2:22838-22912 - 22838 22912 25 NotMaximal AUU NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22837;75;0&s=-&p=30&e=30&w=0&f=22838-22912-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22838-22912&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -21.584144 0.9135 4.71960438364 -4.5732951844 -28.702276 7.118132 NA 0.434598730262 0.830542080417 NA 0.722389711867 0.220345108253 0.346666666667 0.46875 0.0 NC_045512.2:22331-22369 - 22331 22369 13 NotMaximal AUA NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22330;39;0&s=-&p=30&e=30&w=0&f=22331-22369-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22331-22369&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -21.5891 0.9887 4.36794832527 -4.94261799644 -27.9721538462 6.38305384615 NA 0.0174377340062 0.0174377340062 NA 0.926133810842 0.0174377340062 0.487179487179 0.0 0.0 NC_045512.2:24630-24740 + 24630 24740 37 NotMaximal AUC NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24629;111;0&p=30&e=30&w=0&f=24630-24740", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24630-24740&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -21.6072162162 1.0 1.41441441441 -15.2764394904 -14.5292432432 -7.07797297296 NA 0.343053882468 0.542353898747 NA 0.832690867654 0.0174377340062 0.414414414414 0.0 0.585585585586 NC_045512.2:14172-14210 + 14172 14210 13 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14171;39;0&p=30&e=30&w=0&f=14172-14210", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14172-14210&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -21.6157923077 1.0 2.0 -10.8078961539 -28.2776 6.6618076923 NA 0.0174377340062 0.400856259157 NA 0.0 0.0 0.435897435897 0.0 0.0 NC_045512.2:2564-2677 - 2564 2677 38 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2563;114;0&s=-&p=30&e=30&w=0&f=2564-2677-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:2564-2677&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -21.6172684211 1.0 2.5701754386 -8.41081433449 -28.3898473684 6.77257894732 NA 0.25216343806 0.499921862282 NA 0.723145043139 0.094488035162 0.438596491228 0.3648 0.0 NC_045512.2:19055-19120 - 19055 19120 22 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19054;66;0&s=-&p=30&e=30&w=0&f=19055-19120-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19055-19120&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -21.6174181818 1.0 1.54545454545 -13.9877411765 -23.9812545455 2.36383636365 NA 0.706439850236 1.0 NA 1.0 0.706439850236 0.424242424242 0.0 0.0 NC_045512.2:7710-7751 + 7710 7751 14 Maximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7709;42;0&p=30&e=30&w=0&f=7710-7751", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7710-7751&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -21.6174714286 1.0 1.45238095238 -14.8841606558 -8.85523571429 -12.7622357143 NA 0.907624938955 0.890405339411 NA 0.749272342504 0.639677681914 0.404761904762 0.6 0.0 NC_045512.2:17417-17467 - 17417 17467 17 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17416;51;0&s=-&p=30&e=30&w=0&f=17417-17467-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17417-17467&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -21.6263823529 1.0 1.66666666667 -12.9758294117 -24.0739647059 2.44758235298 0.979866514732 0.343053882468 1.0 0.343053882468 1.0 0.343053882468 0.509803921569 0.666666666667 0.0 NC_045512.2:24624-24740 + 24624 24740 39 NotMaximal CUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24623;117;0&p=30&e=30&w=0&f=24624-24740", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24624-24740&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -21.6375076923 1.0 1.38461538462 -15.6270888889 -14.1042794872 -7.53322820512 NA 0.343053882468 0.542353898747 NA 1.0 0.0174377340062 0.418803418803 0.0 0.606837606838 NC_045512.2:19214-19300 + 19214 19300 29 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19213;87;0&p=30&e=30&w=0&f=19214-19300", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19214-19300&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -21.6375137931 1.0 1.67816091954 -12.8935869863 -14.5788 -7.0587137931 NA 0.768324922676 0.364759889305 NA 0.259566986814 0.0174377340062 0.402298850575 0.0 0.0 NC_045512.2:4485-4556 + 4485 4556 24 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4484;72;0&p=30&e=30&w=0&f=4485-4556", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4485-4556&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -21.6599958333 1.0 1.84722222222 -11.7257120301 -11.8103791667 -9.84961666663 NA 0.656181019046 0.706439850236 NA 1.0 0.656181019046 0.347222222222 0.0 0.0 NC_045512.2:24555-24596 - 24555 24596 14 Maximal AUU NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24554;42;0&s=-&p=30&e=30&w=0&f=24555-24596-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24555-24596&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -21.6612 1.0 1.40476190476 -15.4198372881 -18.5773714286 -3.08382857143 NA 0.869233273645 0.706439850236 NA 0.30142275761 0.30142275761 0.404761904762 0.0 0.666666666667 NC_045512.2:12588-12629 + 12588 12629 14 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12587;42;0&p=30&e=30&w=0&f=12588-12629", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12588-12629&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -21.6703214286 1.0 1.45238095238 -14.9205491803 -16.1428071429 -5.52751428574 NA 0.26510174182 0.685713820609 NA 0.850402083672 0.26510174182 0.285714285714 0.0 0.0 NC_045512.2:26743-26784 + 26743 26784 14 Maximal AUU NearCognate M =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26742;42;0&p=30&e=30&w=0&f=26743-26784", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26743-26784&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -21.6855 1.0 1.33333333333 -16.264125 -12.5073357143 -9.17816428571 NA 0.693169461175 0.094488035162 NA 0.649503499919 0.0174377340062 0.47619047619 0.875 0.0 NC_045512.2:20609-20659 - 20609 20659 17 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20608;51;0&s=-&p=30&e=30&w=0&f=20609-20659-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20609-20659&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -21.6939117647 1.0 1.39215686275 -15.5829507042 -17.6842294118 -4.00968235294 NA 1.0 0.980224645938 NA 0.094488035162 0.094488035162 0.333333333333 0.0 0.0 NC_045512.2:21914-21976 - 21914 21976 21 NotMaximal AUC NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21913;63;0&s=-&p=30&e=30&w=0&f=21914-21976-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21914-21976&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -21.6945380952 1.0 4.11111111111 -5.27704980694 -41.3083619048 19.6138238096 NA 0.0174377340062 0.77317922839 NA 0.660172554127 0.0174377340062 0.238095238095 1.16666666667 0.0 NC_045512.2:21914-22072 - 21914 22072 53 NotMaximal AUA NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21913;159;0&s=-&p=30&e=30&w=0&f=21914-22072-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21914-22072&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -21.7293754717 0.9065 4.92758125184 -4.409744733 -34.7077698113 12.9783943396 NA 0.0174377340062 0.641650659287 NA 0.559638613056 0.0174377340062 0.289308176101 0.630952380952 0.0 NC_045512.2:18233-18277 + 18233 18277 15 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18232;45;0&p=30&e=30&w=0&f=18233-18277", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18233-18277&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -21.7387666667 1.0 1.33333333333 -16.304075 -16.0906866667 -5.64808000003 NA 0.0174377340062 0.87203320853 NA 1.0 0.0174377340062 0.4 1.125 0.0 NC_045512.2:7037-7090 - 7037 7090 18 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7036;54;0&s=-&p=30&e=30&w=0&f=7037-7090-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7037-7090&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -21.7399888889 1.0 2.01851851852 -10.7702697248 -27.9962833333 6.25629444443 NA 0.630349991861 0.704219436757 NA 0.900390688589 0.318381898095 0.407407407407 0.0 0.5 NC_045512.2:5151-5213 + 5151 5213 21 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5150;63;0&p=30&e=30&w=0&f=5151-5213", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5151-5213&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -21.7410761905 1.0 1.47619047619 -14.7278258065 -16.2089047619 -5.5321714286 NA 1.0 0.706439850236 NA 0.865111509035 0.68114601986 0.428571428571 0.0 0.0 NC_045512.2:29022-29081 + 29022 29081 20 NotMaximal CUG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29021;60;0&p=30&e=30&w=0&f=29022-29081", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29022-29081&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -21.741245 1.0 1.65 -13.1765121212 -16.3371 -5.404145 NA 0.0174377340062 1.0 NA 0.704206413804 0.0174377340062 0.483333333333 0.576923076923 0.0 NC_045512.2:1581-1736 + 1581 1736 52 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1580;156;0&p=30&e=30&w=0&f=1581-1736", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1581-1736&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -21.7546961538 1.0 1.95512820513 -11.1269921311 -14.9872423077 -6.76745384611 NA 0.706439850236 0.0174377340062 NA 0.688552824353 0.0174377340062 0.365384615385 0.385185185185 0.0 NC_045512.2:21914-22057 - 21914 22057 48 NotMaximal AUU NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21913;144;0&s=-&p=30&e=30&w=0&f=21914-22057-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21914-22057&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -21.7564291667 0.8967 4.98253763224 -4.36653584429 -35.3218208333 13.5653916666 NA 0.0174377340062 0.641650659287 NA 0.966641706007 0.0174377340062 0.291666666667 0.692307692308 0.0 NC_045512.2:23201-23296 - 23201 23296 32 NotMaximal AUC NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23200;96;0&s=-&p=30&e=30&w=0&f=23201-23296-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23201-23296&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -21.762215625 1.0 3.375 -6.44806388889 -35.36675625 13.604540625 NA 0.364759889305 0.244076184275 NA 0.638749796516 0.0 0.4375 0.218181818182 0.0 NC_045512.2:19217-19300 + 19217 19300 28 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19216;84;0&p=30&e=30&w=0&f=19217-19300", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19217-19300&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -21.770775 1.0 1.70238095238 -12.7884272727 -13.8854464286 -7.88532857143 NA 0.768324922676 0.364759889305 NA 0.533579684193 0.0174377340062 0.404761904762 0.0 0.0 NC_045512.2:11727-11756 - 11727 11756 10 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;11726;30;0&s=-&p=30&e=30&w=0&f=11727-11756-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:11727-11756&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -21.78194 1.0 1.4 -15.5585285714 -17.31841 -4.46353 NA 1.0 1.0 NA 0.586885886375 0.586885886375 0.433333333333 0.0 0.0 NC_045512.2:19496-19537 + 19496 19537 14 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19495;42;0&p=30&e=30&w=0&f=19496-19537", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19496-19537&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -21.8005857143 1.0 1.66666666667 -13.0803514286 -10.1025142857 -11.6980714286 NA 0.987637961908 0.384258505616 NA 0.869005371968 0.358616311249 0.333333333333 0.857142857143 0.0 NC_045512.2:759-878 + 759 878 40 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;758;120;0&p=30&e=30&w=0&f=759-878", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:759-878&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -21.8117725 1.0 1.65833333333 -13.1528276382 -14.4616425 -7.35013 NA 0.0894774540127 0.544821748331 NA 1.0 0.0174377340062 0.5 0.666666666667 0.0916666666667 NC_045512.2:23424-23510 + 23424 23510 29 NotMaximal CUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23423;87;0&p=30&e=30&w=0&f=23424-23510", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23424-23510&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -21.8211413793 1.0 3.08045977011 -7.08372873134 -23.2729551724 1.45181379311 NA 0.460371154159 0.445095230343 NA 0.276959140485 0.0174377340062 0.402298850575 0.572368421053 0.0 NC_045512.2:1356-1397 + 1356 1397 14 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1355;42;0&p=30&e=30&w=0&f=1356-1397", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1356-1397&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -21.8272571429 1.0 2.2380952381 -9.75260425534 -19.9514071429 -1.87585000004 NA 0.59783818981 0.469790004884 NA 1.0 0.364759889305 0.333333333333 0.0 0.119047619048 NC_045512.2:18788-18841 - 18788 18841 18 Maximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18787;54;0&s=-&p=30&e=30&w=0&f=18788-18841-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18788-18841&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -21.8532611111 1.0 1.53703703704 -14.2177843373 -20.2486833333 -1.60457777777 NA 1.0 1.0 NA 0.647771447176 0.647771447176 0.425925925926 0.0 0.0 NC_045512.2:25755-25814 + 25755 25814 20 Maximal AAG NearCognate ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25754;60;0&p=30&e=30&w=0&f=25755-25814", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25755-25814&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -21.853885 1.0 2.03333333333 -10.7478122951 -17.23935 -4.614535 NA 0.978368875142 0.743975256389 NA 0.0174377340062 0.0174377340062 0.366666666667 0.495867768595 0.0 NC_045512.2:23388-23510 + 23388 23510 41 NotMaximal CUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23387;123;0&p=30&e=30&w=0&f=23388-23510", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23388-23510&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -21.8621707317 1.0 2.68292682927 -8.14862727272 -23.2752756098 1.41310487806 NA 0.460371154159 0.445095230343 NA 0.987712843887 0.343053882468 0.406504065041 0.3961352657 0.0 NC_045512.2:21914-22054 - 21914 22054 47 NotMaximal AUU NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21913;141;0&s=-&p=30&e=30&w=0&f=21914-22054-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21914-22054&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -21.9047212766 0.8945 5.08145687264 -4.31071675419 -34.721312766 12.8165914894 NA 0.0174377340062 0.641650659287 NA 0.344844538499 0.0174377340062 0.297872340426 0.677884615385 0.0 NC_045512.2:21914-21973 - 21914 21973 20 NotMaximal AUU NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21913;60;0&s=-&p=30&e=30&w=0&f=21914-21973-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21914-21973&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -21.91488 1.0 4.06666666667 -5.38890491803 -42.029865 20.114985 NA 0.0174377340062 0.77317922839 NA 0.383965489175 0.0174377340062 0.233333333333 1.25 0.0 NC_045512.2:28665-28697 - 28665 28697 11 NotMaximal GUG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28664;33;0&s=-&p=30&e=30&w=0&f=28665-28697-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28665-28697&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -21.9197454545 1.0 1.24242424242 -17.6427219512 -20.7368090909 -1.18293636359 NA 0.332615985675 0.912111346248 NA 0.912111346248 0.332615985675 0.484848484848 0.0 0.0 NC_045512.2:20873-20911 + 20873 20911 13 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20872;39;0&p=30&e=30&w=0&f=20873-20911", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20873-20911&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -21.9234769231 1.0 1.82051282051 -12.0424732394 -18.0974076923 -3.82606923079 NA 0.364759889305 0.772121113462 NA 0.696933094579 0.0174377340062 0.461538461538 0.0 0.0 NC_045512.2:8380-8409 + 8380 8409 10 Maximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8379;30;0&p=30&e=30&w=0&f=8380-8409", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8380-8409&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -21.92505 1.0 1.56666666667 -13.994712766 -16.91531 -5.00974 NA 0.094488035162 0.974706169624 NA 0.880641380433 0.0174377340062 0.366666666667 1.0 0.0 NC_045512.2:10716-10757 + 10716 10757 14 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10715;42;0&p=30&e=30&w=0&f=10716-10757", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10716-10757&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -21.9257214286 1.0 1.33333333333 -16.4442910714 -13.0945142857 -8.83120714289 NA 1.0 0.262562265994 NA 0.946306364968 0.262562265994 0.357142857143 0.84 0.0 NC_045512.2:24957-24995 + 24957 24995 13 Maximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24956;39;0&p=30&e=30&w=0&f=24957-24995", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24957-24995&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -21.9359307692 1.0 1.58974358974 -13.7984080645 -12.7801076923 -9.15582307689 NA 0.424111997395 1.0 NA 0.343053882468 0.333954094091 0.358974358974 0.0 0.769230769231 NC_045512.2:22454-22504 - 22454 22504 17 NotMaximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22453;51;0&s=-&p=30&e=30&w=0&f=22454-22504-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22454-22504&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -21.9374882353 1.0 3.21568627451 -6.82202378049 -29.0670294118 7.12954117646 NA 0.343053882468 0.509024906398 NA 1.0 0.333954094091 0.333333333333 0.708333333333 0.0 NC_045512.2:23316-23354 + 23316 23354 13 NotMaximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23315;39;0&p=30&e=30&w=0&f=23316-23354", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23316-23354&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -21.9437769231 1.0 1.4358974359 -15.2822732143 -22.4801615385 0.536384615362 NA 0.76950024418 0.485762656682 NA 0.760283249227 0.368347712844 0.384615384615 0.0 0.692307692308 NC_045512.2:5154-5213 + 5154 5213 20 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5153;60;0&p=30&e=30&w=0&f=5154-5213", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5154-5213&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -21.94933 1.0 1.41666666667 -15.4936447059 -16.99933 -4.95 NA 1.0 0.706439850236 NA 1.0 0.706439850236 0.433333333333 0.0 0.0 NC_045512.2:18470-18520 + 18470 18520 17 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18469;51;0&p=30&e=30&w=0&f=18470-18520", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18470-18520&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -21.9495941176 1.0 1.50980392157 -14.5380428571 -12.9659117647 -8.98368235289 NA 0.817349829074 0.905492430409 NA 0.612742959466 0.554331759727 0.352941176471 0.0 0.0 NC_045512.2:23418-23510 + 23418 23510 31 NotMaximal AAG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23417;93;0&p=30&e=30&w=0&f=23418-23510", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23418-23510&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -21.9597032258 1.0 3.04301075269 -7.21643957597 -24.385683871 2.42598064517 NA 0.460371154159 0.445095230343 NA 1.0 0.343053882468 0.408602150538 0.521008403361 0.0 NC_045512.2:1692-1724 - 1692 1724 11 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1691;33;0&s=-&p=30&e=30&w=0&f=1692-1724-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1692-1724&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -21.9773818182 1.0 2.21212121212 -9.93498082193 -21.4636454545 -0.513736363655 NA 0.895116392642 0.0 NA 0.967872375061 0.0 0.393939393939 0.0 0.0 NC_045512.2:4904-4945 - 4904 4945 14 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4903;42;0&s=-&p=30&e=30&w=0&f=4904-4945-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4904-4945&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -22.0125571429 1.0 2.33333333333 -9.43395306124 -23.1274142857 1.11485714281 NA 0.094488035162 0.292749470943 NA 0.0 0.0 0.357142857143 0.0 0.0 NC_045512.2:4784-4813 - 4784 4813 10 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4783;30;0&s=-&p=30&e=30&w=0&f=4784-4813-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4784-4813&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -22.04669 1.0 2.13333333333 -10.3343859375 -32.21208 10.16539 NA 0.094488035162 0.553892235064 NA 0.740413478756 0.094488035162 0.4 0.0 0.0 NC_045512.2:2793-2867 + 2793 2867 25 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2792;75;0&p=30&e=30&w=0&f=2793-2867", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:2793-2867&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -22.047624 1.0 1.76 -12.5270590909 -19.322512 -2.725112 NA 0.094488035162 0.697971675077 NA 0.835357317272 0.094488035162 0.373333333333 0.416666666667 0.0 NC_045512.2:25974-26066 + 25974 26066 31 NotMaximal AUC NearCognate ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25973;93;0&p=30&e=30&w=0&f=25974-26066", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25974-26066&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -22.047983871 1.0 2.01075268817 -10.965040107 -23.4874258065 1.43944193545 NA 0.909412339248 0.0174377340062 NA 0.333954094091 0.0 0.387096774194 0.0 0.0860215053763 NC_045512.2:24789-24863 - 24789 24863 25 NotMaximal GUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24788;75;0&s=-&p=30&e=30&w=0&f=24789-24863-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24789-24863&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -22.05636 1.0 1.56 -14.1386923077 -18.914628 -3.141732 NA 1.0 0.273768517011 NA 0.943330620218 0.094488035162 0.453333333333 0.263157894737 0.813333333333 NC_045512.2:22398-22427 + 22398 22427 10 Maximal AUA NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22397;30;0&p=30&e=30&w=0&f=22398-22427", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22398-22427&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -22.07814 1.0 3.36666666667 -6.55786336634 -15.29754 -6.7806 NA 0.483718053069 0.972209018395 NA 0.672176461013 0.343053882468 0.333333333333 0.0 0.0 NC_045512.2:2235-2309 + 2235 2309 25 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2234;75;0&p=30&e=30&w=0&f=2235-2309", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:2235-2309&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -22.09274 1.0 2.45333333333 -9.00519293478 -13.793092 -8.299648 NA 0.094488035162 0.0894774540127 NA 0.890405339411 0.0894774540127 0.4 0.375 0.0 NC_045512.2:21323-21397 + 21323 21397 25 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21322;75;0&p=30&e=30&w=0&f=21323-21397", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21323-21397&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -22.116412 1.0 1.37333333333 -16.1041834951 -12.753236 -9.363176 0.094488035162 1.0 1.0 0.094488035162 0.949161647404 0.949161647404 0.306666666667 0.0 0.0 NC_045512.2:1596-1736 + 1596 1736 47 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1595;141;0&p=30&e=30&w=0&f=1596-1736", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1596-1736&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -22.1258595745 1.0 1.94326241135 -11.3859350365 -15.4576340426 -6.66822553195 NA 0.706439850236 0.0174377340062 NA 0.267455640566 0.0174377340062 0.347517730496 0.235 0.0 NC_045512.2:7143-7175 - 7143 7175 11 Maximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7142;33;0&s=-&p=30&e=30&w=0&f=7143-7175-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7143-7175&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -22.1295 1.0 2.0303030303 -10.8996044776 -14.1610363636 -7.96846363636 NA 0.390053719681 1.0 NA 0.623685495686 0.390053719681 0.363636363636 0.0 0.0 NC_045512.2:1717-1752 + 1717 1752 12 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1716;36;0&p=30&e=30&w=0&f=1717-1752", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1717-1752&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -22.1452083333 1.0 1.91666666667 -11.5540217391 -19.271375 -2.8738333333 NA 0.637584242227 0.094488035162 NA 0.719117694937 0.0174377340062 0.361111111111 0.0 0.0 NC_045512.2:24129-24167 + 24129 24167 13 NotMaximal ACG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24128;39;0&p=30&e=30&w=0&f=24129-24167", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24129-24167&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -22.1566307692 1.0 2.53846153846 -8.72836969696 -16.6918153846 -5.46481538458 NA 0.997883770145 0.947237506105 NA 1.0 0.945121276249 0.461538461538 0.506493506494 0.0 NC_045512.2:23295-23354 + 23295 23354 20 NotMaximal AUC NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23294;60;0&p=30&e=30&w=0&f=23295-23354", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23295-23354&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -22.165605 1.0 2.38333333333 -9.30025384615 -24.852435 2.68683 NA 0.76950024418 0.368347712844 NA 0.638749796516 0.094488035162 0.4 0.0 0.45 NC_045512.2:2229-2309 + 2229 2309 27 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2228;81;0&p=30&e=30&w=0&f=2229-2309", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:2229-2309&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -22.1742 1.0 2.40740740741 -9.21082153846 -13.8097851852 -8.36441481481 NA 0.094488035162 0.0894774540127 NA 0.573133648055 0.0894774540127 0.407407407407 0.334710743802 0.0 NC_045512.2:9186-9260 - 9186 9260 25 Maximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9185;75;0&s=-&p=30&e=30&w=0&f=9186-9260-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9186-9260&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -22.1858 1.0 1.49333333333 -14.8565625 -16.439856 -5.745944 NA 0.912111346248 0.673065277552 NA 0.576379619079 0.489099788377 0.426666666667 0.340909090909 0.0 NC_045512.2:1965-1997 - 1965 1997 11 Maximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1964;33;0&s=-&p=30&e=30&w=0&f=1965-1997-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1965-1997&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -22.1865 1.0 2.24242424242 -9.89397972973 -25.4326636364 3.24616363636 NA 0.432615985675 0.300569754192 NA 0.70035161973 0.0174377340062 0.30303030303 0.0 0.0 NC_045512.2:23201-23284 - 23201 23284 28 NotMaximal AUC NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23200;84;0&s=-&p=30&e=30&w=0&f=23201-23284-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23201-23284&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -22.1894 1.0 3.33333333333 -6.65682 -34.5024 12.313 NA 0.364759889305 0.379397688426 NA 0.597633078301 0.0 0.416666666667 0.0 0.0 NC_045512.2:4758-4832 + 4758 4832 25 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4757;75;0&p=30&e=30&w=0&f=4758-4832", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4758-4832&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -22.197216 1.0 1.90666666667 -11.6418965035 -17.131784 -5.065432 NA 0.912111346248 0.455663356666 NA 1.0 0.455663356666 0.36 0.0 0.0 NC_045512.2:3390-3419 + 3390 3419 10 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3389;30;0&p=30&e=30&w=0&f=3390-3419", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3390-3419&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -22.22018 1.0 2.03333333333 -10.927957377 -16.19183 -6.02835 0.094488035162 0.094488035162 0.811056487058 0.0174377340062 0.966882630636 0.0174377340062 0.4 0.0 0.0 NC_045512.2:4482-4556 + 4482 4556 25 Maximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4481;75;0&p=30&e=30&w=0&f=4482-4556", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4482-4556&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -22.221516 1.0 1.84 -12.0769108696 -12.119168 -10.102348 NA 0.656181019046 0.706439850236 NA 0.688770958815 0.395210809051 0.333333333333 0.0 0.0 NC_045512.2:1155-1190 - 1155 1190 12 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1154;36;0&s=-&p=30&e=30&w=0&f=1155-1190-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1155-1190&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -22.2271333333 1.0 1.66666666667 -13.33628 -18.7550583333 -3.47207499997 NA 0.912111346248 0.958665147322 NA 0.477942373433 0.390053719681 0.472222222222 1.0 0.0 NC_045512.2:27659-27691 - 27659 27691 11 Maximal UUG NearCognate ORF7a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27658;33;0&s=-&p=30&e=30&w=0&f=27659-27691-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27659-27691&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -22.2282363636 1.0 2.15151515152 -10.3314338028 -16.8849090909 -5.34332727269 NA 0.643301318574 0.706439850236 NA 0.52356828911 0.503118997233 0.393939393939 0.0 0.0 NC_045512.2:26594-26650 + 26594 26650 19 NotMaximal AGG NearCognate M =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26593;57;0&p=30&e=30&w=0&f=26594-26650", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26594-26650&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -22.2289578947 1.0 1.59649122807 -13.923632967 -26.5676263158 4.33866842109 NA 0.301699495361 0.637405176624 NA 1.0 0.094488035162 0.385964912281 0.0 0.0 NC_045512.2:19559-19588 - 19559 19588 10 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19558;30;0&s=-&p=30&e=30&w=0&f=19559-19588-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19559-19588&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -22.23531 1.0 1.16666666667 -19.0588371429 -18.91346 -3.32185 NA 1.0 1.0 NA 1.0 1.0 0.333333333333 0.0 0.0 NC_045512.2:26812-26907 + 26812 26907 32 Maximal UUG NearCognate M =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26811;96;0&p=30&e=30&w=0&f=26812-26907", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26812-26907&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -22.23906875 1.0 1.40625 -15.8144488889 -14.30699375 -7.932075 NA 1.0 0.865111509035 NA 0.912111346248 0.68114601986 0.458333333333 1.07142857143 0.0 NC_045512.2:23400-23510 + 23400 23510 37 NotMaximal AGG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23399;111;0&p=30&e=30&w=0&f=23400-23510", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23400-23510&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -22.2582918919 1.0 2.81981981982 -7.89351565495 -23.2945702703 1.03627837837 NA 0.460371154159 0.445095230343 NA 1.0 0.343053882468 0.414414414414 0.420454545455 0.0 NC_045512.2:5511-5558 + 5511 5558 16 Maximal ACG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5510;48;0&p=30&e=30&w=0&f=5511-5558", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5511-5558&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -22.25955625 1.0 1.8125 -12.2811344828 -16.207925 -6.05163125 NA 0.860446036139 0.368347712844 NA 1.0 0.094488035162 0.479166666667 0.380952380952 0.0 NC_045512.2:777-878 + 777 878 34 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;776;102;0&p=30&e=30&w=0&f=777-878", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:777-878&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -22.2650647059 1.0 1.57843137255 -14.1058173913 -13.2797 -8.9853647059 NA 0.0894774540127 0.544821748331 NA 0.684808725378 0.0174377340062 0.5 0.627692307692 0.0 NC_045512.2:23201-23302 - 23201 23302 34 NotMaximal CUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23200;102;0&s=-&p=30&e=30&w=0&f=23201-23302-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23201-23302&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -22.2875558824 1.0 3.43137254902 -6.49523057144 -36.5367970588 14.2492411764 NA 0.364759889305 0.244076184275 NA 0.577786097998 0.0 0.450980392157 0.194285714286 0.0 NC_045512.2:23632-23685 + 23632 23685 18 Maximal AUC NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23631;54;0&p=30&e=30&w=0&f=23632-23685", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23632-23685&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -22.2914111111 1.0 1.83333333333 -12.1589515151 -24.5657166667 2.27430555557 NA 1.0 0.415158717239 NA 0.846657984698 0.415158717239 0.407407407407 0.0 0.037037037037 NC_045512.2:10695-10757 + 10695 10757 21 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10694;63;0&p=30&e=30&w=0&f=10695-10757", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10695-10757&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -22.3057238095 1.0 1.26984126984 -17.5657575 -13.3651190476 -8.94060476188 0.942057626567 1.0 0.0174377340062 0.0174377340062 1.0 0.0174377340062 0.396825396825 0.403846153846 0.0 NC_045512.2:24297-24326 - 24297 24326 10 NotMaximal AUU NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24296;30;0&s=-&p=30&e=30&w=0&f=24297-24326-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24297-24326&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -22.31425 1.0 1.3 -17.1648076923 -19.58273 -2.73152 NA 0.848933745727 1.0 NA 0.094488035162 0.094488035162 0.333333333333 0.0 0.666666666667 NC_045512.2:1587-1736 + 1587 1736 50 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1586;150;0&p=30&e=30&w=0&f=1587-1736", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1587-1736&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -22.317508 1.0 1.98 -11.2714686869 -15.506784 -6.810724 NA 0.706439850236 0.0174377340062 NA 0.550916490314 0.0174377340062 0.36 0.411522633745 0.0 NC_045512.2:26603-26650 + 26603 26650 16 NotMaximal AUU NearCognate M =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26602;48;0&p=30&e=30&w=0&f=26603-26650", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26603-26650&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -22.31838125 1.0 1.6875 -13.2257074074 -24.46569375 2.1473125 NA 0.301699495361 0.637405176624 NA 0.364776167996 0.0174377340062 0.375 0.0 0.0 NC_045512.2:18227-18277 + 18227 18277 17 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18226;51;0&p=30&e=30&w=0&f=18227-18277", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18227-18277&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -22.3229764706 1.0 1.33333333333 -16.742232353 -15.7908294118 -6.53214705884 NA 0.0174377340062 0.87203320853 NA 0.809210483477 0.0174377340062 0.372549019608 1.15909090909 0.0 NC_045512.2:19596-19640 + 19596 19640 15 Maximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19595;45;0&p=30&e=30&w=0&f=19596-19640", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19596-19640&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -22.33586 1.0 1.51111111111 -14.7810838235 -22.2176066667 -0.118253333333 NA 0.444811981117 0.827328666775 NA 1.0 0.411694611753 0.355555555556 0.0 0.0 NC_045512.2:8805-8834 - 8805 8834 10 Maximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8804;30;0&s=-&p=30&e=30&w=0&f=8805-8834-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8805-8834&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -22.3382 1.0 1.7 -13.1401176471 -19.01655 -3.32165 NA 0.094488035162 0.352739703728 NA 0.0174377340062 0.0174377340062 0.466666666667 0.0 0.0 NC_045512.2:25810-25848 - 25810 25848 13 NotMaximal AUU NearCognate ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25809;39;0&s=-&p=30&e=30&w=0&f=25810-25848-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25810-25848&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -22.3515076923 1.0 2.05128205128 -10.89636 -26.5421230769 4.19061538462 NA 0.864958489337 0.833810841608 NA 1.0 0.602692495523 0.333333333333 0.0 0.0 NC_045512.2:6768-6857 + 6768 6857 30 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6767;90;0&p=30&e=30&w=0&f=6768-6857", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6768-6857&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -22.3628933333 1.0 1.9 -11.7699438596 -20.9058033333 -1.45708999997 NA 0.54829887677 0.648028650497 NA 0.894344782679 0.22944489663 0.288888888889 0.5625 0.0444444444444 NC_045512.2:24345-24437 + 24345 24437 31 NotMaximal AUA NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24344;93;0&p=30&e=30&w=0&f=24345-24437", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24345-24437&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -22.3698677419 1.0 1.84946236559 -12.0953354651 -17.681883871 -4.68798387093 NA 0.854488035162 0.565577079603 NA 0.786335666612 0.370284877096 0.397849462366 0.0 0.41935483871 NC_045512.2:5988-6023 - 5988 6023 12 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5987;36;0&s=-&p=30&e=30&w=0&f=5988-6023-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5988-6023&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -22.381775 0.9813 1.52858602682 -14.6421428741 -18.9881083333 -3.39366666667 0.40905746378 0.094488035162 0.594969884421 0.0 0.981299039557 0.094488035162 0.416666666667 0.0 0.0 NC_045512.2:20684-20722 + 20684 20722 13 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20683;39;0&p=30&e=30&w=0&f=20684-20722", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20684-20722&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -22.3846538462 1.0 1.51282051282 -14.7966355933 -15.7831384615 -6.60151538466 NA 0.0174377340062 0.859671170438 NA 0.667960279993 0.0174377340062 0.307692307692 0.0 0.0 NC_045512.2:18230-18277 + 18230 18277 16 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;18229;48;0&p=30&e=30&w=0&f=18230-18277", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:18230-18277&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -22.38580625 1.0 1.35416666667 -16.5310569231 -15.5720375 -6.81376875 NA 0.0174377340062 0.87203320853 NA 0.402926908677 0.0 0.395833333333 1.09090909091 0.0 NC_045512.2:26489-26551 + 26489 26551 21 NotMaximal AUU NearCognate M =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26488;63;0&p=30&e=30&w=0&f=26489-26551", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26489-26551&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -22.391247619 0.9701 1.6852047943 -13.2869593623 -22.1338666667 -0.257380952333 NA 0.703805958001 0.0 NA 0.094488035162 0.0 0.349206349206 1.04132231405 0.0 NC_045512.2:1692-1760 - 1692 1760 23 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1691;69;0&s=-&p=30&e=30&w=0&f=1692-1760-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1692-1760&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -22.3961869565 1.0 2.13043478261 -10.5124959184 -25.410473913 3.01428695654 0.292114601986 0.895116392642 0.0 0.0 0.890405339411 0.0 0.36231884058 0.0 0.0 NC_045512.2:23201-23404 - 23201 23404 68 NotMaximal AUC NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23200;204;0&s=-&p=30&e=30&w=0&f=23201-23404-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23201-23404&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -22.4110970588 1.0 2.79901960784 -8.00676672504 -30.1148455882 7.70374852944 NA 0.364759889305 0.0 NA 0.890405339411 0.0 0.416666666667 0.113333333333 0.132352941176 NC_045512.2:23201-23371 - 23201 23371 57 NotMaximal AUU NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23200;171;0&s=-&p=30&e=30&w=0&f=23201-23371-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23201-23371&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -22.4237368421 1.0 2.87134502924 -7.80948879837 -30.2513035088 7.82756666667 NA 0.364759889305 0.0 NA 0.759710239297 0.0 0.421052631579 0.132352941176 0.157894736842 NC_045512.2:25619-25654 + 25619 25654 12 NotMaximal GUG NearCognate ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25618;36;0&p=30&e=30&w=0&f=25619-25654", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25619-25654&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -22.4433916667 1.0 2.97222222222 -7.55104766356 -18.4684 -3.9749916667 NA 0.769923490151 0.873009930002 NA 0.085388246785 0.085388246785 0.388888888889 0.0 0.0 NC_045512.2:8037-8099 + 8037 8099 21 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8036;63;0&p=30&e=30&w=0&f=8037-8099", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8037-8099&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -22.4532666667 1.0 1.61904761905 -13.8681941177 -20.772947619 -1.68031904765 NA 0.292749470943 0.643773400619 NA 0.925381735308 0.283649682566 0.31746031746 2.07692307692 0.0 NC_045512.2:3375-3419 + 3375 3419 15 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3374;45;0&p=30&e=30&w=0&f=3375-3419", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3375-3419&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -22.45518 1.0 1.88888888889 -11.8880364706 -17.4269 -5.02828 0.923991535081 0.094488035162 0.592114601986 0.0174377340062 0.995031743448 0.0174377340062 0.311111111111 0.0 0.0 NC_045512.2:2196-2309 + 2196 2309 38 Maximal ACG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2195;114;0&p=30&e=30&w=0&f=2196-2309", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:2196-2309&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -22.4697763158 1.0 2.25438596491 -9.9671381323 -13.8412210526 -8.62855526317 NA 0.094488035162 0.0894774540127 NA 1.0 0.0894774540127 0.385964912281 0.508928571429 0.0 NC_045512.2:26830-26907 + 26830 26907 26 NotMaximal UUG NearCognate M =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26829;78;0&p=30&e=30&w=0&f=26830-26907", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26830-26907&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -22.4744192308 1.0 1.52564102564 -14.7311319328 -13.1035346154 -9.37088461542 NA 1.0 0.865111509035 NA 0.909376526127 0.67841119974 0.474358974359 1.25 0.0 NC_045512.2:8040-8099 + 8040 8099 20 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8039;60;0&p=30&e=30&w=0&f=8040-8099", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8040-8099&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -22.479815 1.0 1.63333333333 -13.7631520408 -22.26066 -0.219155 1.0 0.292749470943 0.643773400619 0.283649682566 1.0 0.283649682566 0.316666666667 2.30769230769 0.0 NC_045512.2:23201-23293 - 23201 23293 31 NotMaximal ACG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23200;93;0&s=-&p=30&e=30&w=0&f=23201-23293-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23201-23293&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -22.4978225806 1.0 3.39784946237 -6.62119462024 -35.6053387097 13.1075161291 NA 0.364759889305 0.244076184275 NA 0.518469803028 0.0 0.440860215054 0.222488038278 0.0 NC_045512.2:2241-2309 + 2241 2309 23 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2240;69;0&p=30&e=30&w=0&f=2241-2309", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:2241-2309&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -22.514173913 1.0 2.50724637681 -8.97964161848 -13.1171434783 -9.39703043474 NA 0.094488035162 0.0894774540127 NA 0.610190460687 0.0894774540127 0.405797101449 0.383333333333 0.0 NC_045512.2:3751-3798 + 3751 3798 16 Maximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3750;48;0&p=30&e=30&w=0&f=3751-3798", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3751-3798&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -22.547275 1.0 2.41666666667 -9.32990689655 -27.70425625 5.15698125 NA 0.867156112649 0.544701286017 NA 0.094488035162 0.094488035162 0.375 0.6 0.0 NC_045512.2:1818-1853 + 1818 1853 12 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1817;36;0&p=30&e=30&w=0&f=1818-1853", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1818-1853&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -22.566975 1.0 2.27777777778 -9.90745243902 -13.6721 -8.894875 NA 0.706439850236 0.877414943839 NA 0.966882630636 0.6603320853 0.388888888889 0.0 0.0 NC_045512.2:13053-13085 + 13053 13085 11 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13052;33;0&p=30&e=30&w=0&f=13053-13085", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13053-13085&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -22.5715454545 1.0 1.39393939394 -16.1926304348 -18.5899 -3.9816454545 NA 0.789656519616 1.0 NA 0.920247436106 0.763936187531 0.333333333333 0.0 0.0 NC_045512.2:23292-23354 + 23292 23354 21 NotMaximal GUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23291;63;0&p=30&e=30&w=0&f=23292-23354", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23292-23354&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -22.610747619 1.0 2.42857142857 -9.31030784312 -23.6422952381 1.0315476191 NA 0.76950024418 0.368347712844 NA 0.518469803028 0.094488035162 0.412698412698 0.0 0.428571428571 NC_045512.2:21914-21964 - 21914 21964 17 NotMaximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21913;51;0&s=-&p=30&e=30&w=0&f=21914-21964-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21914-21964&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -22.6118294118 1.0 4.03921568627 -5.59807427185 -45.0390117647 22.4271823529 NA 0.0174377340062 0.881354387107 NA 0.72933420153 0.0174377340062 0.254901960784 1.21428571429 0.0 NC_045512.2:24114-24167 + 24114 24167 18 NotMaximal GUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24113;54;0&p=30&e=30&w=0&f=24114-24167", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24114-24167&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -22.6129 1.0 2.35185185185 -9.61493385827 -16.7974555556 -5.81544444444 NA 0.997883770145 0.947237506105 NA 1.0 0.945121276249 0.425925925926 0.415384615385 0.037037037037 NC_045512.2:1815-1877 - 1815 1877 21 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1814;63;0&s=-&p=30&e=30&w=0&f=1815-1877-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1815-1877&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -22.6137619048 1.0 2.46031746032 -9.19140000002 -21.9348761905 -0.678885714324 0.621927397037 0.424593846655 0.526114276412 0.0803776656357 1.0 0.0803776656357 0.365079365079 0.0 0.0 NC_045512.2:2799-2867 + 2799 2867 23 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2798;69;0&p=30&e=30&w=0&f=2799-2867", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:2799-2867&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -22.6158304348 1.0 1.8115942029 -12.4839384 -20.8845652174 -1.73126521741 NA 0.094488035162 0.697971675077 NA 0.912111346248 0.094488035162 0.376811594203 0.450980392157 0.0 NC_045512.2:25991-26047 + 25991 26047 19 NotMaximal GUG NearCognate ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25990;57;0&p=30&e=30&w=0&f=25991-26047", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25991-26047&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -22.6158526316 1.0 2.05263157895 -11.0179794872 -12.8689526316 -9.74690000002 NA 0.094488035162 0.739768842585 NA 1.0 0.094488035162 0.368421052632 0.0 0.0 NC_045512.2:6753-6857 + 6753 6857 35 Maximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6752;105;0&p=30&e=30&w=0&f=6753-6857", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6753-6857&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -22.6179371429 1.0 2.02857142857 -11.149687324 -19.0816285714 -3.53630857147 NA 0.54829887677 0.648028650497 NA 0.75547126811 0.22944489663 0.285714285714 0.475113122172 0.0380952380952 NC_045512.2:1870-1920 + 1870 1920 17 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1869;51;0&p=30&e=30&w=0&f=1870-1920", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1870-1920&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -22.6338647059 1.0 2.21568627451 -10.2152840708 -19.0843411765 -3.54952352943 NA 0.54092462966 0.658219111183 NA 0.325114764773 0.0894774540127 0.470588235294 1.09285714286 0.0 NC_045512.2:23201-23317 - 23201 23317 39 NotMaximal AAG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23200;117;0&s=-&p=30&e=30&w=0&f=23201-23317-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23201-23317&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -22.6429076923 1.0 3.48717948718 -6.4931867647 -32.4001128205 9.75720512821 NA 0.364759889305 0.0 NA 0.760283249227 0.0 0.435897435897 0.181677018634 0.0 NC_045512.2:24774-24872 + 24774 24872 33 NotMaximal AAG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24773;99;0&p=30&e=30&w=0&f=24774-24872", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24774-24872&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -22.6435666667 1.0 1.66666666667 -13.58614 -14.0612515152 -8.58231515155 NA 0.085388246785 0.890405339411 NA 0.890405339411 0.085388246785 0.424242424242 0.225 0.707070707071 NC_045512.2:7803-7835 + 7803 7835 11 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7802;33;0&p=30&e=30&w=0&f=7803-7835", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7803-7835&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -22.6472363636 1.0 1.48484848485 -15.2522204081 -17.9331727273 -4.71406363633 0.925111509035 0.855441966466 0.890405339411 0.589161647404 1.0 0.649770470454 0.30303030303 0.0 0.0 NC_045512.2:24408-24437 + 24408 24437 10 NotMaximal AAG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24407;30;0&p=30&e=30&w=0&f=24408-24437", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24408-24437&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -22.65278 1.0 1.63333333333 -13.8690489796 -13.49668 -9.1561 NA 0.854488035162 0.623988279342 NA 1.0 0.566364968257 0.4 0.0 0.366666666667 NC_045512.2:5907-5936 - 5907 5936 10 Maximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5906;30;0&s=-&p=30&e=30&w=0&f=5907-5936-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5907-5936&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -22.65334 1.0 1.6 -14.1583375 -17.44017 -5.21317 NA 0.390053719681 0.368347712844 NA 0.978368875142 0.094488035162 0.333333333333 0.0 0.633333333333 NC_045512.2:3858-3908 + 3858 3908 17 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3857;51;0&p=30&e=30&w=0&f=3858-3908", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3858-3908&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -22.6590470588 0.9877 3.90902567808 -5.79659713823 -19.8578941176 -2.80115294115 NA 0.220345108253 0.885625915676 NA 0.487797493082 0.0 0.352941176471 0.662337662338 0.0 NC_045512.2:1803-1853 + 1803 1853 17 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1802;51;0&p=30&e=30&w=0&f=1803-1853", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1803-1853&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -22.6594294118 1.0 2.8431372549 -7.96986827587 -17.9515294118 -4.70790000004 NA 0.706439850236 0.585293830376 NA 0.972840631613 0.374168972815 0.352941176471 0.0 0.0 NC_045512.2:2925-2954 + 2925 2954 10 Maximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2924;30;0&p=30&e=30&w=0&f=2925-2954", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:2925-2954&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -22.67709 1.0 1.93333333333 -11.7295293103 -19.91912 -2.75797 NA 0.340371154159 0.701429269087 NA 0.840146508221 0.0894774540127 0.4 0.0 0.0 NC_045512.2:25155-25202 - 25155 25202 16 Maximal AUG Canonical S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25154;48;0&s=-&p=30&e=30&w=0&f=25155-25202-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25155-25202&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -22.680625 1.0 1.5 -15.1204166667 -20.6041875 -2.0764375 0.306804492919 1.0 0.271762982256 0.271762982256 1.0 0.271762982256 0.375 0.6 0.354166666667 NC_045512.2:19499-19537 + 19499 19537 13 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19498;39;0&p=30&e=30&w=0&f=19499-19537", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19499-19537&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -22.7206923077 1.0 1.69230769231 -13.4258636364 -11.0969 -11.6237923077 0.969031417874 0.987637961908 0.384258505616 0.384258505616 1.0 0.384258505616 0.333333333333 0.928571428571 0.0 NC_045512.2:23382-23510 + 23382 23510 43 NotMaximal AGG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23381;129;0&p=30&e=30&w=0&f=23382-23510", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23382-23510&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -22.7245697674 1.0 2.6976744186 -8.42376293102 -22.9248860465 0.200316279112 NA 0.460371154159 0.445095230343 NA 0.628139345597 0.0174377340062 0.410852713178 0.367521367521 0.0 NC_045512.2:26554-26586 + 26554 26586 11 NotMaximal AAG NearCognate M =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26553;33;0&p=30&e=30&w=0&f=26554-26586", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26554-26586&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -22.7374727273 1.0 1.72727272727 -13.1638 -11.0696727273 -11.6678 NA 0.972840631613 0.846075207553 NA 0.912111346248 0.818915839167 0.393939393939 0.0 0.0 NC_045512.2:25216-25284 + 25216 25284 23 NotMaximal AGG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25215;69;0&p=30&e=30&w=0&f=25216-25284", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25216-25284&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -22.7386521739 1.0 2.21739130435 -10.2546862745 -19.2910826087 -3.4475695652 NA 0.424925931955 0.866342178089 NA 0.0174377340062 0.0 0.405797101449 0.0 0.376811594203 NC_045512.2:22725-22763 + 22725 22763 13 Maximal AUG Canonical S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22724;39;0&p=30&e=30&w=0&f=22725-22763", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22725-22763&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -22.7483461538 1.0 2.38461538462 -9.53962903224 -22.5766230769 -0.171723076877 0.539830701612 0.68114601986 0.978368875142 0.3341592056 0.978368875142 0.659514895002 0.333333333333 0.0 0.0 NC_045512.2:5451-5528 - 5451 5528 26 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5450;78;0&s=-&p=30&e=30&w=0&f=5451-5528-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5451-5528&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -22.7564538462 1.0 1.51282051282 -15.0424016949 -21.3756461538 -1.38080769235 NA 0.706439850236 0.094488035162 NA 0.254738727006 0.094488035162 0.346153846154 0.443181818182 0.0 NC_045512.2:21914-22129 - 21914 22129 72 NotMaximal AAG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21913;216;0&s=-&p=30&e=30&w=0&f=21914-22129-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21914-22129&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -22.7694458333 0.9263 5.32742595195 -4.27400512718 -35.2949222222 12.5254763889 NA 0.0174377340062 0.440817190298 NA 0.296903792935 0.0174377340062 0.310185185185 0.392014519056 0.0 NC_045512.2:22728-22763 + 22728 22763 12 NotMaximal AUC NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22727;36;0&p=30&e=30&w=0&f=22728-22763", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22728-22763&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -22.7723333333 1.0 2.41666666667 -9.42303448274 -24.6662 1.8938666667 NA 0.68114601986 1.0 NA 0.813537359596 0.604278040046 0.333333333333 0.0 0.0 NC_045512.2:4527-4565 - 4527 4565 13 Maximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4526;39;0&s=-&p=30&e=30&w=0&f=4527-4565-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4527-4565&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -22.7775 1.0 1.48717948718 -15.3159051724 -16.0581384615 -6.71936153846 NA 0.44785609637 0.364759889305 NA 0.094488035162 0.0 0.358974358974 0.866666666667 0.0 NC_045512.2:5181-5213 + 5181 5213 11 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5180;33;0&p=30&e=30&w=0&f=5181-5213", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5181-5213&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -22.7836272727 1.0 1.39393939394 -16.3447760869 -15.5879545455 -7.19567272725 NA 1.0 0.890405339411 NA 0.993911769494 0.884317108904 0.424242424242 0.0 0.0 NC_045512.2:20666-20722 + 20666 20722 19 Maximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20665;57;0&p=30&e=30&w=0&f=20666-20722", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20666-20722&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -22.7916894737 1.0 1.77192982456 -12.8626366337 -21.5018526316 -1.28983684212 NA 0.0174377340062 0.859671170438 NA 0.912111346248 0.0174377340062 0.421052631579 0.797202797203 0.0 NC_045512.2:2802-2867 + 2802 2867 22 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2801;66;0&p=30&e=30&w=0&f=2802-2867", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:2802-2867&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -22.8059954545 1.0 1.87878787879 -12.138675 -21.9940090909 -0.811986363591 0.970971837864 0.094488035162 0.697971675077 0.085388246785 1.0 0.094488035162 0.378787878788 0.458333333333 0.0 NC_045512.2:23397-23510 + 23397 23510 38 NotMaximal AUC NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23396;114;0&p=30&e=30&w=0&f=23397-23510", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23397-23510&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -22.8187947368 1.0 2.80701754386 -8.12919562499 -22.8686947368 0.0499000000421 NA 0.460371154159 0.445095230343 NA 0.636389386293 0.343053882468 0.412280701754 0.414545454545 0.0 NC_045512.2:8283-8312 + 8283 8312 10 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8282;30;0&p=30&e=30&w=0&f=8283-8312", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8283-8312&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -22.82061 1.0 1.1 -20.7460090909 -8.34907 -14.47154 NA 1.0 0.811704378968 NA 0.0174377340062 0.0174377340062 0.3 0.0 0.0 NC_045512.2:23201-23401 - 23201 23401 67 NotMaximal CUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23200;201;0&s=-&p=30&e=30&w=0&f=23201-23401-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23201-23401&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -22.8296402985 1.0 2.83582089552 -8.05045210526 -30.6346298507 7.80498955225 NA 0.364759889305 0.0 NA 1.0 0.0 0.417910447761 0.11452991453 0.134328358209 NC_045512.2:21914-22126 - 21914 22126 71 NotMaximal AUU NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21913;213;0&s=-&p=30&e=30&w=0&f=21914-22126-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21914-22126&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -22.8448084507 0.9253 5.31795307803 -4.2957897739 -35.5245788732 12.6797704225 NA 0.0174377340062 0.586517987954 NA 0.798639101416 0.0174377340062 0.30985915493 0.40037593985 0.0 NC_045512.2:765-878 + 765 878 38 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;764;114;0&p=30&e=30&w=0&f=765-878", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:765-878&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -22.8648973684 1.0 1.71929824561 -13.2989709184 -15.1767552632 -7.68814210524 NA 0.0894774540127 0.544821748331 NA 0.943330620218 0.0174377340062 0.508771929825 0.677764565993 0.0438596491228 NC_045512.2:23201-23425 - 23201 23425 75 NotMaximal AGG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23200;225;0&s=-&p=30&e=30&w=0&f=23201-23425-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23201-23425&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -22.892328 1.0 2.76444444444 -8.28098681672 -29.8547266667 6.96239866667 NA 0.364759889305 0.0 NA 0.576366596126 0.0 0.422222222222 0.100267379679 0.12 NC_045512.2:7930-7998 + 7930 7998 23 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7929;69;0&p=30&e=30&w=0&f=7930-7998", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7930-7998&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -22.9225782609 1.0 1.79710144928 -12.7553056452 -26.5210913043 3.59851304345 NA 0.368347712844 0.331880188833 NA 0.716050789517 0.0174377340062 0.405797101449 0.353846153846 0.0 NC_045512.2:27487-27522 - 27487 27522 12 Maximal AUU NearCognate ORF7a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27486;36;0&s=-&p=30&e=30&w=0&f=27487-27522-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27487-27522&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -22.92475 1.0 1.80555555556 -12.6967846154 -20.7753916667 -2.14935833333 NA 0.986729610939 0.731649031418 NA 0.89048022139 0.630489988605 0.444444444444 0.5625 0.0 NC_045512.2:23772-23849 + 23772 23849 26 Maximal AUU NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23771;78;0&p=30&e=30&w=0&f=23772-23849", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23772-23849&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -22.9263423077 1.0 2.07692307692 -11.0386092593 -16.4659384615 -6.46040384616 NA 0.778987465408 0.910291388572 NA 0.972528080742 0.718811655543 0.333333333333 0.0 0.0 NC_045512.2:23201-23395 - 23201 23395 65 NotMaximal AAG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23200;195;0&s=-&p=30&e=30&w=0&f=23201-23395-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23201-23395&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -22.9373553846 1.0 2.87692307692 -7.9728775401 -30.3987430769 7.46138769232 NA 0.364759889305 0.0 NA 0.528337945629 0.0 0.420512820513 0.116626794258 0.138461538462 NC_045512.2:1997-2047 - 1997 2047 17 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1996;51;0&s=-&p=30&e=30&w=0&f=1997-2047-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1997-2047&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -22.9412411765 1.0 2.58823529412 -8.86366136365 -43.8210647059 20.8798235294 NA 0.70035161973 0.094488035162 NA 0.094488035162 0.0883998046557 0.372549019608 0.0 0.0 NC_045512.2:2713-2742 + 2713 2742 10 Maximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2712;30;0&p=30&e=30&w=0&f=2713-2742", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:2713-2742&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -22.94142 1.0 2.36666666667 -9.69355774648 -21.76264 -1.17878 NA 0.477942373433 0.446905420804 NA 0.754728959792 0.368347712844 0.5 0.555555555556 0.0 NC_045512.2:29025-29081 + 29025 29081 19 NotMaximal CUG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29024;57;0&p=30&e=30&w=0&f=29025-29081", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29025-29081&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -22.9494315789 1.0 1.70175438596 -13.4857484536 -17.4591421053 -5.49028947364 NA 0.0174377340062 1.0 NA 0.821448803516 0.0174377340062 0.473684210526 0.633333333333 0.0 NC_045512.2:20948-20989 + 20948 20989 14 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20947;42;0&p=30&e=30&w=0&f=20948-20989", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20948-20989&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -22.9581214286 1.0 1.40476190476 -16.3430694915 -17.2335785714 -5.72454285717 NA 1.0 0.67340061859 NA 0.98892723425 0.662327852841 0.333333333333 0.0 0.0 NC_045512.2:21914-22000 - 21914 22000 29 NotMaximal GUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21913;87;0&s=-&p=30&e=30&w=0&f=21914-22000-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21914-22000&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -22.9776586207 0.9843 4.80323567633 -4.78378746518 -41.0946172414 18.1169586207 NA 0.0174377340062 0.77317922839 NA 0.305762656682 0.0174377340062 0.275862068966 0.608391608392 0.0 NC_045512.2:24688-24810 + 24688 24810 41 Maximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24687;123;0&p=30&e=30&w=0&f=24688-24810", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24688-24810&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -22.9802243902 1.0 2.11382113821 -10.8714138461 -28.2288219512 5.24859756102 NA 0.863245971024 0.992895979163 NA 1.0 0.856141950187 0.455284552846 0.0 0.121951219512 NC_045512.2:21914-22081 - 21914 22081 56 NotMaximal CUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21913;168;0&s=-&p=30&e=30&w=0&f=21914-22081-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21914-22081&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -22.9891321429 0.9062 5.18872162796 -4.43059654983 -34.9832267857 11.9940946428 NA 0.0174377340062 0.626843561778 NA 0.775930327202 0.0174377340062 0.303571428571 0.533333333333 0.0 NC_045512.2:5302-5334 + 5302 5334 11 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5301;33;0&p=30&e=30&w=0&f=5302-5334", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5302-5334&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -22.9909818182 1.0 1.72727272727 -13.3105684211 -23.8459454545 0.854963636345 NA 0.854071300667 0.094488035162 NA 0.094488035162 0.094488035162 0.30303030303 0.0 0.0 NC_045512.2:2814-2867 + 2814 2867 18 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2813;54;0&p=30&e=30&w=0&f=2814-2867", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:2814-2867&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -23.0038777778 1.0 1.77777777778 -12.93968125 -21.4561722222 -1.54770555558 NA 0.094488035162 0.899824190135 NA 0.436128927234 0.094488035162 0.388888888889 0.5 0.0 NC_045512.2:23201-23308 - 23201 23308 36 NotMaximal AAG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23200;108;0&s=-&p=30&e=30&w=0&f=23201-23308-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23201-23308&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -23.0384333333 1.0 3.5 -6.5824095238 -34.9690666667 11.9306333334 NA 0.364759889305 0.0 NA 0.514553149927 0.0 0.444444444444 0.190476190476 0.0 NC_045512.2:23201-23383 - 23201 23383 61 NotMaximal CUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23200;183;0&s=-&p=30&e=30&w=0&f=23201-23383-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23201-23383&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -23.0518360656 1.0 2.95628415301 -7.79757116452 -31.1688983607 8.11706229506 NA 0.364759889305 0.0 NA 0.0174377340062 0.0 0.420765027322 0.124489795918 0.147540983607 NC_045512.2:22331-22372 - 22331 22372 14 NotMaximal AAG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22330;42;0&s=-&p=30&e=30&w=0&f=22331-22372-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22331-22372&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -23.06055 0.9895 4.31785677823 -5.3407399051 -25.9132571429 2.85270714286 NA 0.0174377340062 0.0174377340062 NA 0.456467524011 0.0174377340062 0.47619047619 0.0 0.0 NC_045512.2:21914-22156 - 21914 22156 81 NotMaximal AUC NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21913;243;0&s=-&p=30&e=30&w=0&f=21914-22156-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21914-22156&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -23.0633864198 0.9345 5.15524282149 -4.47377305365 -35.5396 12.4762135802 NA 0.0174377340062 0.440817190298 NA 0.887292853655 0.0174377340062 0.304526748971 0.372413793103 0.0 NC_045512.2:23385-23510 + 23385 23510 42 NotMaximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23384;126;0&p=30&e=30&w=0&f=23385-23510", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23385-23510&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -23.0664452381 1.0 2.69841269841 -8.5481532353 -22.6771761905 -0.389269047624 NA 0.460371154159 0.445095230343 NA 0.542685984047 0.0174377340062 0.404761904762 0.388888888889 0.0 NC_045512.2:1155-1187 - 1155 1187 11 NotMaximal ACG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1154;33;0&s=-&p=30&e=30&w=0&f=1155-1187-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1155-1187&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -23.0667909091 1.0 1.72727272727 -13.3544578947 -17.0773454545 -5.98944545455 NA 0.912111346248 0.958665147322 NA 0.809337457268 0.721448803516 0.454545454545 1.22222222222 0.0 NC_045512.2:25989-26066 + 25989 26066 26 NotMaximal CUG NearCognate ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25988;78;0&p=30&e=30&w=0&f=25989-26066", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25989-26066&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -23.0700076923 1.0 2.16666666667 -10.647695858 -25.5291269231 2.45911923078 NA 0.909412339248 0.0174377340062 NA 0.094488035162 0.0174377340062 0.397435897436 0.0 0.102564102564 NC_045512.2:23201-23398 - 23201 23398 66 NotMaximal AUA NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23200;198;0&s=-&p=30&e=30&w=0&f=23201-23398-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23201-23398&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -23.0719424242 1.0 2.86868686869 -8.04268415491 -30.4488984848 7.37695606065 NA 0.364759889305 0.0 NA 0.636389386293 0.0 0.414141414141 0.118421052632 0.136363636364 NC_045512.2:17423-17470 + 17423 17470 16 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17422;48;0&p=30&e=30&w=0&f=17423-17470", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17423-17470&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -23.0737 1.0 1.6875 -13.6733037037 -10.6653 -12.4084 0.633931303923 0.783490151392 0.890405339411 0.378013999674 1.0 0.57781865538 0.520833333333 0.666666666667 0.0 NC_045512.2:19444-19473 - 19444 19473 10 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19443;30;0&s=-&p=30&e=30&w=0&f=19444-19473-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19444-19473&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -23.08005 1.0 1.93333333333 -11.9379568966 -39.01549 15.93544 NA 0.523649682566 0.982197623311 NA 0.467742145531 0.0174377340062 0.4 1.66666666667 0.0 NC_045512.2:25726-25794 - 25726 25794 23 Maximal ACG NearCognate ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25725;69;0&s=-&p=30&e=30&w=0&f=25726-25794-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25726-25794&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -23.0875565217 1.0 2.79710144928 -8.25410051812 -24.3022565217 1.21470000004 NA 0.484610125346 0.526755656845 NA 0.0883998046557 0.0883998046557 0.376811594203 0.43125 0.0 NC_045512.2:21914-22084 - 21914 22084 57 NotMaximal AGG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21913;171;0&s=-&p=30&e=30&w=0&f=21914-22084-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21914-22084&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -23.1009245614 0.9079 5.24389025437 -4.40530282687 -35.1834105263 12.0824859649 NA 0.0174377340062 0.626843561778 NA 0.266195669868 0.0174377340062 0.309941520468 0.495652173913 0.0 NC_045512.2:19643-19690 - 19643 19690 16 Maximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19642;48;0&s=-&p=30&e=30&w=0&f=19643-19690-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19643-19690&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -23.1080625 1.0 2.0 -11.55403125 -32.02793125 8.91986875 NA 0.0174377340062 0.454999186065 NA 0.452648543057 0.0174377340062 0.416666666667 0.0 0.0 NC_045512.2:2784-2867 + 2784 2867 28 Maximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2783;84;0&p=30&e=30&w=0&f=2784-2867", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:2784-2867&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -23.1212035714 1.0 1.75 -13.2121163265 -19.4594964286 -3.66170714283 NA 0.094488035162 0.697971675077 NA 0.0174377340062 0.0174377340062 0.357142857143 0.388888888889 0.0 NC_045512.2:3861-3908 + 3861 3908 16 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3860;48;0&p=30&e=30&w=0&f=3861-3908", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3861-3908&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -23.12199375 0.9869 3.98667311629 -5.79982182525 -19.9136375 -3.20835625 NA 0.220345108253 0.903998046557 NA 0.634660589289 0.0 0.354166666667 0.685714285714 0.0 NC_045512.2:19875-19934 + 19875 19934 20 Maximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19874;60;0&p=30&e=30&w=0&f=19875-19934", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19875-19934&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -23.143095 1.0 1.73333333333 -13.3517855769 -32.745065 9.60197 NA 0.950799283738 0.657151229041 NA 1.0 0.612202506918 0.4 0.0 0.0 NC_045512.2:1410-1442 + 1410 1442 11 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1409;33;0&p=30&e=30&w=0&f=1410-1442", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1410-1442&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -23.1903727273 1.0 1.84848484848 -12.5456114754 -12.0506272727 -11.1397454546 NA 0.094488035162 1.0 NA 0.890405339411 0.094488035162 0.393939393939 0.785714285714 0.30303030303 NC_045512.2:21914-22090 - 21914 22090 59 NotMaximal AAG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21913;177;0&s=-&p=30&e=30&w=0&f=21914-22090-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21914-22090&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -23.1999949153 0.911 5.21867363558 -4.44557305847 -35.5901694915 12.3901745762 NA 0.0174377340062 0.626843561778 NA 0.742855282435 0.0174377340062 0.305084745763 0.491666666667 0.0 NC_045512.2:8220-8252 + 8220 8252 11 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8219;33;0&p=30&e=30&w=0&f=8220-8252", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8220-8252&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -23.2024636364 1.0 1.66666666667 -13.9214781818 -22.1765636364 -1.02590000004 NA 0.678339573498 1.0 NA 0.694077812144 0.460306039394 0.30303030303 0.0 0.0 NC_045512.2:21548-21577 - 21548 21577 10 Maximal AAG NearCognate orf1ab,S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21547;30;0&s=-&p=30&e=30&w=0&f=21548-21577-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21548-21577&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -23.20493 0.9925 3.93612094744 -5.89538032746 -27.76598 4.56105 NA 0.912111346248 0.510636496826 NA 0.313729448152 0.280371154159 0.266666666667 2.0 0.0 NC_045512.2:5160-5213 + 5160 5213 18 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5159;54;0&p=30&e=30&w=0&f=5160-5213", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5160-5213&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -23.2079666667 1.0 1.48148148148 -15.6653775 -17.3779777778 -5.82998888892 NA 1.0 0.706439850236 NA 0.886719843725 0.593159693961 0.425925925926 0.0 0.0 NC_045512.2:1904-1945 - 1904 1945 14 Maximal ACG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1903;42;0&s=-&p=30&e=30&w=0&f=1904-1945-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1904-1945&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -23.2300357143 1.0 2.33333333333 -9.95572959184 -32.4008714286 9.17083571427 NA 0.84327201693 0.3202213902 NA 0.752235064301 0.262562265994 0.428571428571 1.16666666667 0.0 NC_045512.2:23201-23500 - 23201 23500 100 Maximal ACG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23200;300;0&s=-&p=30&e=30&w=0&f=23201-23500-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23201-23500&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -23.234606 1.0 2.88 -8.06757152778 -28.153971 4.919365 NA 0.364759889305 0.0 NA 1.0 0.0 0.41 0.23987206823 0.09 NC_045512.2:25726-25779 - 25726 25779 18 NotMaximal AAG NearCognate ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25725;54;0&s=-&p=30&e=30&w=0&f=25726-25779-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25726-25779&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -23.254 1.0 3.18518518519 -7.3006744186 -25.2540777778 2.00007777778 NA 0.484610125346 0.526755656845 NA 0.723818980954 0.0174377340062 0.333333333333 0.0 0.0 NC_045512.2:2817-2867 + 2817 2867 17 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2816;51;0&p=30&e=30&w=0&f=2817-2867", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:2817-2867&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -23.2624882353 1.0 1.8431372549 -12.621137234 -20.5890294118 -2.67345882354 NA 0.094488035162 0.899824190135 NA 0.975494058278 0.094488035162 0.411764705882 0.472222222222 0.0 NC_045512.2:25810-25842 - 25810 25842 11 Maximal AUG Canonical ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25809;33;0&s=-&p=30&e=30&w=0&f=25810-25842-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25810-25842&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -23.2625454545 1.0 1.90909090909 -12.1851428571 -22.2484727273 -1.01407272723 0.858980953931 0.864958489337 0.833810841608 0.464450594172 1.0 0.602692495523 0.363636363636 0.0 0.0 NC_045512.2:22838-22921 - 22838 22921 28 NotMaximal AUA NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22837;84;0&s=-&p=30&e=30&w=0&f=22838-22921-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22838-22921&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -23.2648071429 0.9149 4.63005172663 -5.02474022246 -31.3640142857 8.09920714281 NA 0.434598730262 0.830542080417 NA 0.554654077812 0.346094741983 0.345238095238 0.411764705882 0.0 NC_045512.2:5988-6029 - 5988 6029 14 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5987;42;0&s=-&p=30&e=30&w=0&f=5988-6029-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5988-6029&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -23.2683214286 0.9813 1.60137583762 -14.53020639 -20.5877428571 -2.68057857146 NA 0.094488035162 0.594969884421 NA 0.63497314016 0.0 0.404761904762 0.0 0.0 NC_045512.2:9138-9191 + 9138 9191 18 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9137;54;0&p=30&e=30&w=0&f=9138-9191", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9138-9191&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -23.2817666667 1.0 1.48148148148 -15.7151925 -22.0151 -1.2666666667 0.935884746866 0.673065277552 0.415223832004 0.28767051929 1.0 0.28767051929 0.388888888889 0.0 0.0 NC_045512.2:24657-24740 + 24657 24740 28 NotMaximal GUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24656;84;0&p=30&e=30&w=0&f=24657-24740", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24657-24740&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -23.2930535714 1.0 1.66666666667 -13.9758321428 -16.3797642857 -6.91328928569 NA 0.343053882468 0.542353898747 NA 0.971248575615 0.0174377340062 0.428571428571 0.0 0.452380952381 NC_045512.2:23201-23470 - 23201 23470 90 NotMaximal AUA NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23200;270;0&s=-&p=30&e=30&w=0&f=23201-23470-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23201-23470&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -23.2933744444 1.0 2.85185185185 -8.16780662336 -28.8454977778 5.55212333338 NA 0.364759889305 0.0 NA 0.665723587824 0.0 0.418518518519 0.170239596469 0.1 NC_045512.2:9690-9746 + 9690 9746 19 Maximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9689;57;0&p=30&e=30&w=0&f=9690-9746", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9690-9746&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -23.3148210526 1.0 1.47368421053 -15.8207714285 -11.9211894737 -11.3936315789 NA 0.094488035162 0.368347712844 NA 0.094488035162 0.094488035162 0.280701754386 0.0 0.0 NC_045512.2:10506-10559 - 10506 10559 18 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10505;54;0&s=-&p=30&e=30&w=0&f=10506-10559-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10506-10559&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -23.3254722222 1.0 1.5 -15.5503148148 -14.5686333333 -8.75683888887 NA 1.0 0.87861305551 NA 0.86024092463 0.86024092463 0.333333333333 0.0 0.037037037037 NC_045512.2:21914-22162 - 21914 22162 83 NotMaximal AUA NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21913;249;0&s=-&p=30&e=30&w=0&f=21914-22162-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21914-22162&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -23.3549325301 0.9361 5.11937351655 -4.5620684747 -35.018160241 11.6632277109 NA 0.0174377340062 0.440817190298 NA 0.094488035162 0.0174377340062 0.305220883534 0.365370506236 0.0 NC_045512.2:24768-24872 + 24768 24872 35 NotMaximal CUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24767;105;0&p=30&e=30&w=0&f=24768-24872", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24768-24872&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -23.3585114286 1.0 1.73333333333 -13.4760642857 -14.4167342857 -8.94177714289 NA 0.085388246785 0.890405339411 NA 0.0174377340062 0.0 0.438095238095 0.2 0.666666666667 NC_045512.2:8934-8972 + 8934 8972 13 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8933;39;0&p=30&e=30&w=0&f=8934-8972", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8934-8972&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -23.3705230769 1.0 1.28205128205 -18.229008 -17.2248230769 -6.14569999998 NA 0.582220413479 0.657278202832 NA 0.912111346248 0.263366433339 0.384615384615 0.0 0.0 NC_045512.2:21914-22117 - 21914 22117 68 NotMaximal AUU NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21913;204;0&s=-&p=30&e=30&w=0&f=21914-22117-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21914-22117&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -23.3925455882 0.922 5.37609806677 -4.35121258907 -35.6321602941 12.2396147059 NA 0.0174377340062 0.586517987954 NA 0.614976395898 0.0174377340062 0.31862745098 0.397660818713 0.0 NC_045512.2:24045-24167 + 24045 24167 41 Maximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24044;123;0&p=30&e=30&w=0&f=24045-24167", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24045-24167&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -23.4095853659 1.0 2.08943089431 -11.2038093385 -14.7470731707 -8.66251219517 NA 0.997883770145 0.0174377340062 NA 0.568608171903 0.0174377340062 0.422764227642 0.181952662722 0.341463414634 NC_045512.2:21914-22150 - 21914 22150 79 NotMaximal AUU NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21913;237;0&s=-&p=30&e=30&w=0&f=21914-22150-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21914-22150&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -23.4225582278 0.9329 5.14229538237 -4.55488385753 -35.5933493671 12.1707911393 NA 0.0174377340062 0.440817190298 NA 0.942135764285 0.0174377340062 0.308016877637 0.371473354232 0.0 NC_045512.2:24054-24167 + 24054 24167 38 NotMaximal CUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24053;114;0&p=30&e=30&w=0&f=24054-24167", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24054-24167&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -23.4261710526 1.0 2.12280701754 -11.0354690082 -15.1205868421 -8.30558421049 NA 0.997883770145 0.0174377340062 NA 0.857919583266 0.0174377340062 0.421052631579 0.198260869565 0.368421052632 NC_045512.2:23793-23849 + 23793 23849 19 NotMaximal GUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23792;57;0&p=30&e=30&w=0&f=23793-23849", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23793-23849&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -23.4363263158 1.0 2.36842105263 -9.89533777778 -18.1534947368 -5.28283157896 NA 0.778987465408 0.910291388572 NA 0.944642682728 0.69833631776 0.350877192982 0.0 0.0 NC_045512.2:24072-24167 + 24072 24167 32 NotMaximal AUG Canonical S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24071;96;0&p=30&e=30&w=0&f=24072-24167", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24072-24167&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -23.4863875 1.0 2.1875 -10.7366342857 -15.1611375 -8.32525 0.89678333062 0.997883770145 0.299153508058 0.250060231157 1.0 0.299153508058 0.427083333333 0.228571428571 0.4375 NC_045512.2:21362-21397 + 21362 21397 12 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21361;36;0&p=30&e=30&w=0&f=21362-21397", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21362-21397&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -23.5099833333 1.0 1.66666666667 -14.10599 -12.5944416667 -10.9155416666 NA 1.0 1.0 NA 0.759736285203 0.759736285203 0.305555555556 0.0 0.0 NC_045512.2:8217-8252 + 8217 8252 12 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8216;36;0&p=30&e=30&w=0&f=8217-8252", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8217-8252&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -23.5218083333 1.0 1.69444444444 -13.8817229508 -20.3734916667 -3.14831666663 NA 0.678339573498 1.0 NA 0.390053719681 0.390053719681 0.305555555556 0.0 0.0 NC_045512.2:23201-23494 - 23201 23494 98 NotMaximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23200;294;0&s=-&p=30&e=30&w=0&f=23201-23494-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23201-23494&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -23.5236234694 1.0 2.8843537415 -8.15559587265 -28.2750989796 4.75147551019 NA 0.364759889305 0.0 NA 1.0 0.0 0.408163265306 0.164475524476 0.0918367346939 NC_045512.2:23117-23158 - 23117 23158 14 NotMaximal AUU NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23116;42;0&s=-&p=30&e=30&w=0&f=23117-23158-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23117-23158&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -23.5352785714 1.0 2.57142857143 -9.15260833332 -24.2436928571 0.708414285743 NA 0.803724564545 0.688494221065 NA 0.414152694123 0.294572684356 0.404761904762 0.0 0.0 NC_045512.2:768-878 + 768 878 37 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;767;111;0&p=30&e=30&w=0&f=768-878", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:768-878&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -23.5401297297 1.0 1.75675675676 -13.3997661538 -15.4612756757 -8.07885405402 NA 0.0894774540127 0.544821748331 NA 0.706439850236 0.0174377340062 0.504504504505 0.708812260536 0.018018018018 NC_045512.2:5529-5558 + 5529 5558 10 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5528;30;0&p=30&e=30&w=0&f=5529-5558", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5529-5558&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -23.55996 1.0 2.13333333333 -11.04373125 -18.17243 -5.38753 NA 0.860446036139 0.368347712844 NA 0.579983721309 0.094488035162 0.533333333333 0.0 0.0 NC_045512.2:20954-20989 + 20954 20989 12 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20953;36;0&p=30&e=30&w=0&f=20954-20989", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20954-20989&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -23.5646333333 1.0 1.41666666667 -16.6338588235 -17.5369333333 -6.02769999997 NA 1.0 0.67340061859 NA 0.555122904119 0.522083672473 0.333333333333 0.0 0.0 NC_045512.2:1573-1602 + 1573 1602 10 Maximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1572;30;0&p=30&e=30&w=0&f=1573-1602", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1573-1602&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -23.56637 1.0 2.1 -11.2220809524 -23.2618 -0.30457 NA 0.30057300993 0.291105323132 NA 0.390053719681 0.0 0.5 0.833333333333 0.0 NC_045512.2:10137-10172 - 10137 10172 12 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;10136;36;0&s=-&p=30&e=30&w=0&f=10137-10172-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:10137-10172&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -23.567825 1.0 1.63888888889 -14.3803677966 -18.0684666667 -5.49935833333 NA 0.835930327202 0.706439850236 NA 0.68944489663 0.63025883119 0.444444444444 1.14285714286 0.0 NC_045512.2:21914-22099 - 21914 22099 62 NotMaximal AAG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21913;186;0&s=-&p=30&e=30&w=0&f=21914-22099-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21914-22099&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -23.6038564516 0.9144 5.31034411624 -4.44488265448 -35.9319032258 12.3280467742 NA 0.0174377340062 0.626843561778 NA 0.494172228553 0.0174377340062 0.311827956989 0.447115384615 0.0 NC_045512.2:26551-26586 + 26551 26586 12 NotMaximal UUG NearCognate M =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26550;36;0&p=30&e=30&w=0&f=26551-26586", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26551-26586&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -23.6054083333 1.0 1.66666666667 -14.163245 -11.040875 -12.5645333333 NA 0.972840631613 0.846075207553 NA 0.703805958001 0.61061045092 0.388888888889 0.0 0.0 NC_045512.2:19055-19168 - 19055 19168 38 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19054;114;0&s=-&p=30&e=30&w=0&f=19055-19168-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19055-19168&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -23.6164447368 1.0 1.52631578947 -15.4728431034 -23.3737894737 -0.242655263116 NA 0.706439850236 0.615048022139 NA 0.89440013023 0.265222204135 0.350877192982 0.0 0.0 NC_045512.2:498-530 + 498 530 11 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;497;33;0&p=30&e=30&w=0&f=498-530", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:498-530&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -23.6180636364 1.0 2.57575757576 -9.16936588237 -18.7629727273 -4.85509090913 NA 0.27465733355 0.878489337457 NA 0.477942373433 0.0174377340062 0.515151515152 0.0 0.0 NC_045512.2:4527-4562 - 4527 4562 12 NotMaximal ACG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4526;36;0&s=-&p=30&e=30&w=0&f=4527-4562-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4527-4562&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -23.6249 1.0 1.44444444444 -16.3557 -15.8987583333 -7.72614166667 NA 0.44785609637 0.364759889305 NA 0.912111346248 0.355660100928 0.333333333333 1.02857142857 0.0 NC_045512.2:4194-4298 - 4194 4298 35 Maximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4193;105;0&s=-&p=30&e=30&w=0&f=4194-4298-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4194-4298&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -23.6277885714 1.0 1.79047619048 -13.1963712766 -18.5074085714 -5.12037999997 NA 0.706439850236 0.299651636008 NA 0.368347712844 0.0174377340062 0.428571428571 0.425101214575 0.0 NC_045512.2:3020-3070 - 3020 3070 17 Maximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3019;51;0&s=-&p=30&e=30&w=0&f=3020-3070-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3020-3070&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -23.6281882353 0.9792 2.48201510594 -9.51976004447 -27.5198941176 3.89170588235 NA 0.903662705518 1.0 NA 0.559104671984 0.48439850236 0.392156862745 0.0 0.0 NC_045512.2:20420-20458 + 20420 20458 13 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20419;39;0&p=30&e=30&w=0&f=20420-20458", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20420-20458&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -23.6358384615 1.0 1.30769230769 -18.0744647059 -9.67904615385 -13.9567923077 NA 1.0 0.0174377340062 NA 0.971893211786 0.0174377340062 0.25641025641 0.0 0.0 NC_045512.2:26755-26784 + 26755 26784 10 NotMaximal GUG NearCognate M =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26754;30;0&p=30&e=30&w=0&f=26755-26784", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26755-26784&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -23.64109 1.0 1.4 -16.8864928571 -12.73948 -10.90161 NA 0.693169461175 0.582962721797 NA 0.318573986651 0.276415432199 0.466666666667 0.666666666667 0.0 NC_045512.2:17417-17449 - 17417 17449 11 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17416;33;0&s=-&p=30&e=30&w=0&f=17417-17449-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17417-17449&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -23.6472454545 1.0 1.78787878788 -13.2264254237 -31.5215272727 7.87428181823 NA 0.343053882468 1.0 NA 0.787914699658 0.343053882468 0.484848484848 0.52380952381 0.0 NC_045512.2:4770-4823 - 4770 4823 18 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4769;54;0&s=-&p=30&e=30&w=0&f=4770-4823-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4770-4823&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -23.6659444444 1.0 1.98148148148 -11.9435607476 -21.8863 -1.7796444444 NA 0.668126322644 0.924004558034 NA 0.0 0.0 0.388888888889 0.0 0.0 NC_045512.2:22638-22691 - 22638 22691 18 Maximal AAG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22637;54;0&s=-&p=30&e=30&w=0&f=22638-22691-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22638-22691&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -23.6820666667 1.0 2.0 -11.8410333333 -21.0970944444 -2.58497222226 NA 0.452648543057 0.78657984698 NA 1.0 0.355660100928 0.37037037037 0.593406593407 0.0 NC_045512.2:23724-23753 + 23724 23753 10 NotMaximal GUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23723;30;0&p=30&e=30&w=0&f=23724-23753", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23724-23753&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -23.68804 1.0 1.56666666667 -15.1200255319 -19.84901 -3.83903 NA 0.54 0.359247924467 NA 0.878661891584 0.333954094091 0.4 0.0 0.0 NC_045512.2:819-878 + 819 878 20 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;818;60;0&p=30&e=30&w=0&f=819-878", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:819-878&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -23.701745 1.0 1.58333333333 -14.9695231579 -14.238055 -9.46369 1.0 0.0894774540127 0.68114601986 0.0174377340062 1.0 0.0174377340062 0.466666666667 0.3125 0.0 NC_045512.2:3849-3908 + 3849 3908 20 Maximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3848;60;0&p=30&e=30&w=0&f=3849-3908", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3849-3908&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -23.70662 0.9767 3.79498176318 -6.24683370814 -22.022975 -1.683645 NA 0.220345108253 0.776031255087 NA 0.094488035162 0.0 0.366666666667 0.535714285714 0.0 NC_045512.2:23201-23449 - 23201 23449 83 NotMaximal AAG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23200;249;0&s=-&p=30&e=30&w=0&f=23201-23449-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23201-23449&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -23.7253421687 1.0 2.86746987952 -8.27396386556 -29.7661855422 6.04084337347 NA 0.364759889305 0.0 NA 0.0174377340062 0.0 0.417670682731 0.0926339285714 0.10843373494 NC_045512.2:23790-23849 + 23790 23849 20 NotMaximal GUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23789;60;0&p=30&e=30&w=0&f=23790-23849", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23790-23849&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -23.741725 1.0 2.4 -9.89238541667 -16.88867 -6.853055 NA 0.778987465408 0.910291388572 NA 0.745336154973 0.413084811981 0.366666666667 0.0 0.0 NC_045512.2:23201-23485 - 23201 23485 95 NotMaximal AUU NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23200;285;0&s=-&p=30&e=30&w=0&f=23201-23485-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23201-23485&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -23.7526378947 1.0 2.92280701754 -8.12665282112 -28.5020726316 4.74943473688 NA 0.364759889305 0.0 NA 0.972280644636 0.0 0.414035087719 0.164930555556 0.0947368421053 NC_045512.2:6045-6086 + 6045 6086 14 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6044;42;0&p=30&e=30&w=0&f=6045-6086", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6045-6086&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -23.7528214286 0.9813 1.91679835109 -12.3919250113 -18.7922357143 -4.96058571431 NA 0.697821911118 0.928744912909 NA 0.981299039557 0.626566824027 0.214285714286 0.0 0.0 NC_045512.2:24075-24167 + 24075 24167 31 NotMaximal GUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24074;93;0&p=30&e=30&w=0&f=24075-24167", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24075-24167&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -23.7543870968 1.0 2.1935483871 -10.8292058824 -15.3250129032 -8.42937419357 NA 0.997883770145 0.299153508058 NA 0.47153508058 0.0174377340062 0.430107526882 0.2325 0.440860215054 NC_045512.2:2105-2158 - 2105 2158 18 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2104;54;0&s=-&p=30&e=30&w=0&f=2105-2158-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:2105-2158&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -23.7592388889 1.0 3.09259259259 -7.68262814372 -27.1288 3.3695611111 NA 0.413120625102 0.47036952629 NA 0.551916001953 0.0 0.388888888889 0.519230769231 0.0 NC_045512.2:1359-1397 + 1359 1397 13 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1358;39;0&p=30&e=30&w=0&f=1359-1397", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1359-1397&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -23.7686846154 1.0 2.41025641026 -9.86147553192 -21.5548769231 -2.21380769232 NA 0.59783818981 0.469790004884 NA 0.390053719681 0.364759889305 0.307692307692 0.0 0.0512820512821 NC_045512.2:21914-22174 - 21914 22174 87 NotMaximal AUA NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21913;261;0&s=-&p=30&e=30&w=0&f=21914-22174-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21914-22174&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -23.7870218391 0.939 5.13304216713 -4.63409827245 -35.5678275862 11.7808057471 NA 0.0174377340062 0.256851701123 NA 0.764134787563 0.0174377340062 0.291187739464 0.382978723404 0.0 NC_045512.2:5571-5600 - 5571 5600 10 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5570;30;0&s=-&p=30&e=30&w=0&f=5571-5600-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5571-5600&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -23.78864 1.0 1.5 -15.8590933333 -20.7125 -3.07614 NA 0.477942373433 1.0 NA 0.0 0.0 0.366666666667 0.0 0.0 NC_045512.2:7770-7835 + 7770 7835 22 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7769;66;0&p=30&e=30&w=0&f=7770-7835", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7770-7835&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -23.7892681818 1.0 1.59090909091 -14.9532542857 -14.1996045455 -9.58966363635 NA 0.855441966466 0.890405339411 NA 0.487025883119 0.440341852515 0.30303030303 0.0 0.0 NC_045512.2:8268-8312 + 8268 8312 15 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8267;45;0&p=30&e=30&w=0&f=8268-8312", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8268-8312&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -23.7916733333 1.0 1.15555555556 -20.5889480769 -10.14256 -13.6491133333 NA 1.0 0.811704378968 NA 0.302516685658 0.302516685658 0.266666666667 0.0 0.0 NC_045512.2:21914-21994 - 21914 21994 27 NotMaximal AUA NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21913;81;0&s=-&p=30&e=30&w=0&f=21914-21994-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21914-21994&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -23.7964259259 1.0 4.37037037037 -5.44494491525 -42.688262963 18.8918370371 NA 0.0174377340062 0.77317922839 NA 0.343053882468 0.0174377340062 0.259259259259 0.778846153846 0.0 NC_045512.2:23201-23464 - 23201 23464 88 NotMaximal ACG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23200;264;0&s=-&p=30&e=30&w=0&f=23201-23464-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23201-23464&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -23.8060852273 1.0 2.84848484848 -8.35745545214 -29.3338352273 5.52774999997 NA 0.364759889305 0.0 NA 0.682122741332 0.0 0.424242424242 0.169720347155 0.102272727273 NC_045512.2:23117-23194 - 23117 23194 26 Maximal AUU NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23116;78;0&s=-&p=30&e=30&w=0&f=23117-23194-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23117-23194&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -23.8213269231 1.0 2.51282051282 -9.47991581634 -32.7480923077 8.92676538459 NA 0.803724564545 0.575311736936 NA 0.883884095719 0.575311736936 0.333333333333 0.0 0.0 NC_045512.2:24711-24761 - 24711 24761 17 NotMaximal AAG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24710;51;0&s=-&p=30&e=30&w=0&f=24711-24761-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24711-24761&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -23.8225176471 1.0 1.94117647059 -12.2722060606 -23.5032529412 -0.319264705924 NA 0.542353898747 0.094488035162 NA 1.0 0.0174377340062 0.490196078431 0.0 0.0 NC_045512.2:17417-17458 - 17417 17458 14 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17416;42;0&s=-&p=30&e=30&w=0&f=17417-17458-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17417-17458&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -23.8227357143 1.0 1.71428571429 -13.8965958333 -28.3208357143 4.49809999999 NA 0.343053882468 1.0 NA 0.624193390851 0.343053882468 0.5 0.403846153846 0.0 NC_045512.2:19055-19156 - 19055 19156 34 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19054;102;0&s=-&p=30&e=30&w=0&f=19055-19156-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19055-19156&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -23.8381823529 1.0 1.56862745098 -15.19684125 -23.5269852941 -0.311197058782 NA 0.706439850236 0.615048022139 NA 0.874758261436 0.25001790656 0.362745098039 0.0 0.0 NC_045512.2:19055-19105 - 19055 19105 17 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19054;51;0&s=-&p=30&e=30&w=0&f=19055-19105-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19055-19105&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -23.8398529412 1.0 1.64705882353 -14.4741964286 -23.1783176471 -0.661535294141 NA 0.706439850236 1.0 NA 1.0 0.706439850236 0.43137254902 0.0 0.0 NC_045512.2:1617-1736 + 1617 1736 40 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1616;120;0&p=30&e=30&w=0&f=1617-1736", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1617-1736&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -23.8426325 1.0 1.95 -12.2269910256 -15.26205 -8.5805825 NA 0.706439850236 0.0174377340062 NA 0.521924141299 0.0174377340062 0.341666666667 0.285714285714 0.0 NC_045512.2:21332-21397 + 21332 21397 22 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21331;66;0&p=30&e=30&w=0&f=21332-21397", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21332-21397&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -23.8456363636 1.0 1.45454545455 -16.393875 -13.5622681818 -10.2833681818 0.930880677194 1.0 1.0 0.930880677194 1.0 1.0 0.287878787879 0.0 0.0 NC_045512.2:8052-8099 + 8052 8099 16 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8051;48;0&p=30&e=30&w=0&f=8052-8099", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8052-8099&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -23.8853875 1.0 1.6875 -14.1543037037 -25.881825 1.9964375 NA 0.292749470943 0.882562265994 NA 0.493075044766 0.085388246785 0.3125 2.18181818182 0.0 NC_045512.2:4785-4832 + 4785 4832 16 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4784;48;0&p=30&e=30&w=0&f=4785-4832", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4785-4832&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -23.9021125 1.0 1.95833333333 -12.2053340426 -15.9401625 -7.96195 NA 0.912111346248 0.596955884747 NA 0.407683542243 0.407683542243 0.395833333333 0.0 0.0 NC_045512.2:4764-4832 + 4764 4832 23 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4763;69;0&p=30&e=30&w=0&f=4764-4832", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4764-4832&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -23.913526087 1.0 1.97101449275 -12.1325977941 -17.8715565217 -6.04196956526 NA 0.912111346248 0.455663356666 NA 0.262562265994 0.226869607684 0.36231884058 0.0 0.0 NC_045512.2:21914-22111 - 21914 22111 66 NotMaximal CUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21913;198;0&s=-&p=30&e=30&w=0&f=21914-22111-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21914-22111&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -23.934080303 0.9196 5.42789901829 -4.40945570696 -36.1733469697 12.2392666667 NA 0.0174377340062 0.586517987954 NA 0.43621032069 0.0174377340062 0.318181818182 0.407407407407 0.0 NC_045512.2:27467-27511 - 27467 27511 15 NotMaximal AUG Canonical ORF7a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27466;45;0&s=-&p=30&e=30&w=0&f=27467-27511-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27467-27511&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -23.95352 1.0 1.77777777778 -13.473855 -17.3832 -6.57032 0.455243366433 0.974706169624 0.61680286505 0.389946280319 1.0 0.591509034674 0.377777777778 0.0 0.0 NC_045512.2:20067-20099 + 20067 20099 11 Maximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20066;33;0&p=30&e=30&w=0&f=20067-20099", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20067-20099&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -23.9614636364 1.0 2.54545454545 -9.41343214287 -27.1356 3.1741363636 NA 0.932778772587 0.652042975745 NA 0.872856910304 0.531056487058 0.454545454545 0.0 0.0606060606061 NC_045512.2:4908-4949 + 4908 4949 14 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4907;42;0&p=30&e=30&w=0&f=4908-4949", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4908-4949&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -23.9723714286 1.0 2.30952380952 -10.3797896907 -26.2392642857 2.26689285711 NA 0.368347712844 0.3371902979 NA 0.898404688263 0.094488035162 0.333333333333 0.0 0.0 NC_045512.2:24840-24872 + 24840 24872 11 NotMaximal GUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24839;33;0&p=30&e=30&w=0&f=24840-24872", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24840-24872&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -23.9806181818 1.0 1.45454545455 -16.486675 -12.6094545455 -11.3711636363 NA 0.085388246785 0.890405339411 NA 0.912111346248 0.085388246785 0.424242424242 0.0 1.0 NC_045512.2:19055-19147 - 19055 19147 31 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19054;93;0&s=-&p=30&e=30&w=0&f=19055-19147-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19055-19147&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -23.9999290323 1.0 1.61290322581 -14.879956 -25.1853645161 1.18543548383 NA 0.706439850236 1.0 NA 1.0 0.706439850236 0.344086021505 0.0 0.0 NC_045512.2:4315-4347 + 4315 4347 11 Maximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4314;33;0&p=30&e=30&w=0&f=4315-4347", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4315-4347&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -24.0080454545 1.0 2.54545454545 -9.43173214284 -23.5589454545 -0.449099999955 NA 0.87713495035 0.978368875142 NA 0.955044766401 0.810548591893 0.333333333333 0.0 0.0 NC_045512.2:22838-22942 - 22838 22942 35 NotMaximal AUU NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22837;105;0&s=-&p=30&e=30&w=0&f=22838-22942-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22838-22942&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -24.0127457143 0.9308 5.11120858233 -4.69805630655 -34.0742085714 10.0614628571 NA 0.434598730262 0.743447826795 NA 0.0174377340062 0.0174377340062 0.333333333333 0.367132867133 0.0 NC_045512.2:23201-23455 - 23201 23455 85 NotMaximal AGG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23200;255;0&s=-&p=30&e=30&w=0&f=23201-23455-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23201-23455&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -24.0193364706 1.0 2.87450980392 -8.35597653479 -29.5837 5.5643635294 NA 0.364759889305 0.0 NA 0.683822236692 0.0 0.419607843137 0.0900423728814 0.105882352941 NC_045512.2:6765-6857 + 6765 6857 31 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6764;93;0&p=30&e=30&w=0&f=6765-6857", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6765-6857&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -24.0315677419 1.0 1.95698924731 -12.2798670329 -20.438516129 -3.59305161287 NA 0.54829887677 0.648028650497 NA 0.719856747517 0.0174377340062 0.279569892473 0.58125 0.0430107526882 NC_045512.2:22454-22501 - 22454 22501 16 NotMaximal AUA NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22453;48;0&s=-&p=30&e=30&w=0&f=22454-22501-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22454-22501&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -24.04160625 1.0 3.3125 -7.25784339623 -27.1889875 3.14738125 NA 0.343053882468 0.509024906398 NA 0.682399479082 0.333954094091 0.333333333333 0.761904761905 0.0 NC_045512.2:28096-28149 - 28096 28149 18 Maximal AAG NearCognate ORF8 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28095;54;0&s=-&p=30&e=30&w=0&f=28096-28149-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28096-28149&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -24.0579777778 0.6839 6.376298382 -3.77303199074 -22.1176944444 -1.94028333336 NA 0.094488035162 0.583838515383 NA 0.515734982907 0.094488035162 0.351851851852 1.38461538462 0.0 NC_045512.2:23874-24038 + 23874 24038 55 Maximal CUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23873;165;0&p=30&e=30&w=0&f=23874-24038", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23874-24038&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -24.0619218182 1.0 2.07272727273 -11.6088219298 -17.4034836364 -6.65843818184 NA 0.652410874166 0.390053719681 NA 0.732524825004 0.0174377340062 0.315151515152 0.0 0.0 NC_045512.2:4305-4337 - 4305 4337 11 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4304;33;0&s=-&p=30&e=30&w=0&f=4305-4337-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4305-4337&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -24.0627454545 1.0 2.33333333333 -10.3126051948 -24.2218272727 0.159081818227 0.366091486245 1.0 1.0 0.366091486245 1.0 1.0 0.30303030303 0.0 0.0 NC_045512.2:24711-24773 - 24711 24773 21 Maximal GUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24710;63;0&s=-&p=30&e=30&w=0&f=24711-24773-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24711-24773&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -24.0629 1.0 2.01587301587 -11.9367141732 -22.3299571429 -1.73294285714 NA 0.542353898747 0.094488035162 NA 0.36630310923 0.0174377340062 0.507936507937 0.0 0.0 NC_045512.2:5337-5372 - 5337 5372 12 Maximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5336;36;0&s=-&p=30&e=30&w=0&f=5337-5372-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5337-5372&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -24.072375 1.0 1.77777777778 -13.5407109375 -13.8769 -10.195475 NA 1.0 1.0 NA 0.390053719681 0.390053719681 0.416666666667 0.0 0.0 NC_045512.2:24078-24167 + 24078 24167 30 NotMaximal AUU NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24077;90;0&p=30&e=30&w=0&f=24078-24167", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24078-24167&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -24.0791066667 1.0 2.17777777778 -11.0567326531 -15.37579 -8.7033166667 NA 0.997883770145 0.299153508058 NA 0.368347712844 0.0174377340062 0.422222222222 0.25 0.422222222222 NC_045512.2:3792-3842 + 3792 3842 17 Maximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3791;51;0&p=30&e=30&w=0&f=3792-3842", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3792-3842&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -24.0797882353 0.957 2.5324353049 -9.50855020411 -12.5735941176 -11.5061941177 NA 0.094488035162 0.497037278203 NA 0.477942373433 0.0 0.294117647059 0.0 0.0 NC_045512.2:8046-8099 + 8046 8099 18 NotMaximal ACG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8045;54;0&p=30&e=30&w=0&f=8046-8099", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8046-8099&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -24.0876722222 1.0 1.72222222222 -13.9863903226 -23.8150722222 -0.272599999978 NA 0.292749470943 0.643773400619 NA 0.987637961908 0.271287644473 0.314814814815 2.7 0.0 NC_045512.2:22454-22654 - 22454 22654 67 NotMaximal AUC NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22453;201;0&s=-&p=30&e=30&w=0&f=22454-22654-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22454-22654&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -24.1007402985 1.0 3.13930348259 -7.67709793978 -30.7132671642 6.61252686568 NA 0.343053882468 0.333954094091 NA 0.793628520267 0.0 0.363184079602 0.301801801802 0.0 NC_045512.2:4905-4949 + 4905 4949 15 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4904;45;0&p=30&e=30&w=0&f=4905-4949", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4905-4949&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -24.1018266667 1.0 2.28888888889 -10.5299242719 -24.8321733333 0.730346666633 0.743340387433 0.368347712844 0.3371902979 0.094488035162 1.0 0.094488035162 0.333333333333 0.0 0.0 NC_045512.2:21914-22195 - 21914 22195 94 Maximal AUU NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21913;282;0&s=-&p=30&e=30&w=0&f=21914-22195-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21914-22195&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -24.1061659574 0.9436 5.23660994901 -4.60339154379 -35.682856383 11.5766904256 NA 0.0174377340062 0.237646101253 NA 0.788350968582 0.0174377340062 0.297872340426 0.493294460641 0.0 NC_045512.2:6684-6731 + 6684 6731 16 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6683;48;0&p=30&e=30&w=0&f=6684-6731", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6684-6731&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -24.1155 1.0 3.10416666667 -7.76875167785 -14.263525 -9.851975 NA 0.094488035162 0.368347712844 NA 0.094488035162 0.094488035162 0.291666666667 0.0 0.0 NC_045512.2:2208-2309 + 2208 2309 34 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2207;102;0&p=30&e=30&w=0&f=2208-2309", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:2208-2309&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -24.1162470588 1.0 2.39215686275 -10.0813819672 -14.5938794118 -9.52236764704 NA 0.094488035162 0.0894774540127 NA 0.094488035162 0.0894774540127 0.372549019608 0.295652173913 0.0 NC_045512.2:25155-25196 - 25155 25196 14 NotMaximal AUU NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25154;42;0&s=-&p=30&e=30&w=0&f=25155-25196-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25155-25196&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -24.1236857143 1.0 1.40476190476 -17.1727932203 -23.9547785714 -0.168907142871 NA 1.0 0.271762982256 NA 0.935240110695 0.271762982256 0.333333333333 0.875 0.404761904762 NC_045512.2:21914-22183 - 21914 22183 90 NotMaximal GUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21913;270;0&s=-&p=30&e=30&w=0&f=21914-22183-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21914-22183&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -24.1259388889 0.9411 5.17675557638 -4.66043616179 -35.7825177778 11.6565788889 NA 0.0174377340062 0.237646101253 NA 0.880830213251 0.0174377340062 0.296296296296 0.3515625 0.0 NC_045512.2:3798-3842 + 3798 3842 15 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3797;45;0&p=30&e=30&w=0&f=3798-3842", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3798-3842&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -24.1334266667 0.9513 2.67009334555 -9.03842058814 -13.09648 -11.0369466667 NA 0.094488035162 0.510307667264 NA 1.0 0.0 0.266666666667 0.0 0.0 NC_045512.2:23201-23254 - 23201 23254 18 NotMaximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23200;54;0&s=-&p=30&e=30&w=0&f=23201-23254-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23201-23254&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -24.1335222222 1.0 3.05555555556 -7.89824363636 -28.8368055556 4.70328333336 NA 0.364759889305 0.563363177601 NA 1.0 0.0 0.407407407407 0.0 0.0 NC_045512.2:22970-22999 - 22970 22999 10 NotMaximal AGG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22969;30;0&s=-&p=30&e=30&w=0&f=22970-22999-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22970-22999&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -24.1337 0.8292 6.21776834938 -3.88140867332 -18.22758 -5.90612 NA 0.411456942862 0.468793748983 NA 0.454943838515 0.0174377340062 0.5 0.555555555556 0.0 NC_045512.2:19455-19490 + 19455 19490 12 Maximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19454;36;0&p=30&e=30&w=0&f=19455-19490", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19455-19490&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -24.1434916667 1.0 1.83333333333 -13.1691772727 -22.6306 -1.5128916667 NA 0.25216343806 0.865899397688 NA 1.0 0.25216343806 0.444444444444 0.654545454545 0.0 NC_045512.2:22331-22378 - 22331 22378 16 Maximal AGG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22330;48;0&s=-&p=30&e=30&w=0&f=22331-22378-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22331-22378&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -24.17641875 0.9908 4.40312468095 -5.49074134889 -26.55635625 2.3799375 NA 0.0174377340062 0.0174377340062 NA 0.846674263389 0.0 0.479166666667 0.0 0.0 NC_045512.2:25998-26066 + 25998 26066 23 NotMaximal AUU NearCognate ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25997;69;0&p=30&e=30&w=0&f=25998-26066", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25998-26066&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -24.1849565217 1.0 2.27536231884 -10.6290573248 -24.7891695652 0.604213043517 NA 0.909412339248 0.0174377340062 NA 0.094488035162 0.0174377340062 0.391304347826 0.0 0.115942028986 NC_045512.2:26860-26907 + 26860 26907 16 NotMaximal AUC NearCognate M =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26859;48;0&p=30&e=30&w=0&f=26860-26907", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26860-26907&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -24.197575 1.0 1.70833333333 -14.1644341463 -12.52148125 -11.67609375 NA 1.0 0.865111509035 NA 0.42881653915 0.42881653915 0.4375 0.6 0.0 NC_045512.2:22454-22657 - 22454 22657 68 Maximal AUA NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22453;204;0&s=-&p=30&e=30&w=0&f=22454-22657-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22454-22657&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -24.2025617647 1.0 3.10784313725 -7.78757507886 -30.9495514706 6.74698970589 NA 0.343053882468 0.333954094091 NA 0.298264691519 0.0 0.357843137255 0.306306306306 0.0 NC_045512.2:23802-23849 + 23802 23849 16 NotMaximal CUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23801;48;0&p=30&e=30&w=0&f=23802-23849", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23802-23849&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -24.21738125 1.0 2.39583333333 -10.1081243478 -15.28021875 -8.9371625 NA 0.778987465408 0.910291388572 NA 0.649116067068 0.649116067068 0.354166666667 0.0 0.0 NC_045512.2:22838-22963 - 22838 22963 42 Maximal AUC NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22837;126;0&s=-&p=30&e=30&w=0&f=22838-22963-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22838-22963&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -24.2414380952 0.9421 4.83179882696 -5.01706278828 -33.8594452381 9.6180071429 NA 0.434598730262 0.61271691356 NA 0.711958326551 0.2486504965 0.34126984127 0.285067873303 0.0 NC_045512.2:26563-26604 - 26563 26604 14 Maximal AUA NearCognate M =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26562;42;0&s=-&p=30&e=30&w=0&f=26563-26604-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26563-26604&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -24.2435571429 1.0 1.54761904762 -15.6650676923 -22.7294071429 -1.51415000004 NA 0.871369037929 0.598616311249 NA 0.364776167996 0.355676379619 0.357142857143 0.0 0.0 NC_045512.2:1632-1736 + 1632 1736 35 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1631;105;0&p=30&e=30&w=0&f=1632-1736", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1632-1736&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -24.2594057143 1.0 1.91428571429 -12.6728238806 -15.5988742857 -8.66053142859 NA 0.706439850236 0.226869607684 NA 0.819332573661 0.219124206414 0.352380952381 0.308823529412 0.0 NC_045512.2:789-878 + 789 878 30 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;788;90;0&p=30&e=30&w=0&f=789-878", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:789-878&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -24.2606033333 1.0 1.62222222222 -14.9551664383 -14.7579833333 -9.50261999997 NA 0.0894774540127 0.544821748331 NA 0.704437571219 0.0174377340062 0.5 0.533596837945 0.0 NC_045512.2:3009-3161 - 3009 3161 51 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3008;153;0&s=-&p=30&e=30&w=0&f=3009-3161-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3009-3161&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -24.2626823529 0.9649 2.45728248601 -9.87378638438 -25.4371764706 1.17449411769 NA 0.094488035162 0.664489663031 NA 0.706439850236 0.0174377340062 0.385620915033 0.0 0.0 NC_045512.2:17999-18034 - 17999 18034 12 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17998;36;0&s=-&p=30&e=30&w=0&f=17999-18034-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17999-18034&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -24.265125 1.0 1.47222222222 -16.4819716981 -25.400475 1.13535 NA 0.890405339411 0.0174377340062 NA 0.878043301319 0.0174377340062 0.416666666667 0.642857142857 0.0 NC_045512.2:22838-22888 - 22838 22888 17 NotMaximal AUC NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22837;51;0&s=-&p=30&e=30&w=0&f=22838-22888-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22838-22888&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -24.2653588235 0.9531 3.66779188121 -6.61579490042 -33.8278882353 9.56252941179 NA 0.434598730262 0.693120625102 NA 0.655165228716 0.250281621358 0.372549019608 0.566666666667 0.0 NC_045512.2:3807-3842 + 3807 3842 12 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3806;36;0&p=30&e=30&w=0&f=3807-3842", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3807-3842&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -24.2757416667 0.9391 2.50428334861 -9.69368808852 -13.25415 -11.0215916667 NA 0.094488035162 0.510307667264 NA 0.254738727006 0.0 0.305555555556 0.0 0.0 NC_045512.2:7887-7934 - 7887 7934 16 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7886;48;0&s=-&p=30&e=30&w=0&f=7887-7934-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7887-7934&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -24.28413125 1.0 1.79166666667 -13.5539337209 -21.46848125 -2.81565 NA 1.0 0.293524336643 NA 0.094488035162 0.0174377340062 0.291666666667 0.0 0.0 NC_045512.2:25224-25256 - 25224 25256 11 Maximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25223;33;0&s=-&p=30&e=30&w=0&f=25224-25256-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25224-25256&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -24.2910818182 1.0 2.69696969697 -9.00680561798 -26.7170181818 2.42593636362 NA 0.890405339411 0.0 NA 0.609343968745 0.0 0.424242424242 0.0 0.0 NC_045512.2:4770-4832 + 4770 4832 21 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4769;63;0&p=30&e=30&w=0&f=4770-4832", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4770-4832&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -24.2920047619 1.0 2.03174603175 -11.9562210937 -17.4201714286 -6.87183333333 NA 0.912111346248 0.455663356666 NA 0.471854142927 0.0883998046557 0.396825396825 0.0 0.0 NC_045512.2:7887-7928 - 7887 7928 14 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7886;42;0&s=-&p=30&e=30&w=0&f=7887-7928-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7887-7928&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -24.3001071429 1.0 1.57142857143 -15.4637045455 -24.2041214286 -0.0959857143286 NA 1.0 0.293524336643 NA 0.22944489663 0.22944489663 0.285714285714 0.0 0.0 NC_045512.2:9186-9242 - 9186 9242 19 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9185;57;0&s=-&p=30&e=30&w=0&f=9186-9242-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9186-9242&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -24.3012210526 1.0 1.43859649123 -16.8923121951 -15.4109 -8.8903210526 NA 0.912111346248 0.673065277552 NA 0.890405339411 0.489099788377 0.438596491228 0.395833333333 0.0 NC_045512.2:4194-4292 - 4194 4292 33 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4193;99;0&s=-&p=30&e=30&w=0&f=4194-4292-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4194-4292&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -24.3017454545 1.0 1.78787878788 -13.5925016949 -18.9157272727 -5.38601818177 NA 0.706439850236 0.299651636008 NA 0.387302620869 0.262275761029 0.424242424242 0.458333333333 0.0 NC_045512.2:20504-20542 - 20504 20542 13 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20503;39;0&s=-&p=30&e=30&w=0&f=20504-20542-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20504-20542&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -24.3251384615 1.0 1.58974358974 -15.3012967742 -28.5103307692 4.18519230773 NA 0.986114276412 1.0 NA 0.343053882468 0.343053882468 0.153846153846 0.0 0.0 NC_045512.2:23201-23446 - 23201 23446 82 NotMaximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23200;246;0&s=-&p=30&e=30&w=0&f=23201-23446-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23201-23446&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -24.3296731707 1.0 2.83739837398 -8.57464126073 -30.5819414634 6.25226829271 NA 0.364759889305 0.0 NA 1.0 0.0 0.418699186992 0.0931818181818 0.109756097561 NC_045512.2:22638-22679 - 22638 22679 14 NotMaximal AUG Canonical S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22637;42;0&s=-&p=30&e=30&w=0&f=22638-22679-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22638-22679&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -24.3397357143 1.0 1.97619047619 -12.3164927711 -18.7106357143 -5.62910000001 0.325059417223 0.452648543057 0.820973465733 0.0 1.0 0.364759889305 0.380952380952 0.666666666667 0.0 NC_045512.2:19892-19930 + 19892 19930 13 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19891;39;0&p=30&e=30&w=0&f=19892-19930", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19892-19930&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -24.3472307692 1.0 1.92307692308 -12.66056 -15.6371461538 -8.71008461535 0.0174377340062 1.0 0.0174377340062 0.0174377340062 0.912111346248 0.0174377340062 0.358974358974 0.0 0.0 NC_045512.2:24519-24548 + 24519 24548 10 NotMaximal AAG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24518;30;0&p=30&e=30&w=0&f=24519-24548", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24519-24548&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -24.36715 1.0 1.76666666667 -13.7927264151 -19.38889 -4.97826 NA 0.706439850236 0.706439850236 NA 1.0 0.706439850236 0.4 0.0 0.0 NC_045512.2:29028-29081 + 29028 29081 18 NotMaximal CUG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29027;54;0&p=30&e=30&w=0&f=29028-29081", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29028-29081&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -24.3707611111 1.0 1.74074074074 -14.0002244681 -17.4642 -6.9065611111 NA 0.0174377340062 1.0 NA 0.934230831841 0.0 0.462962962963 0.701298701299 0.0 NC_045512.2:25994-26047 + 25994 26047 18 NotMaximal UUG NearCognate ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25993;54;0&p=30&e=30&w=0&f=25994-26047", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25994-26047&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -24.3944666667 1.0 2.12962962963 -11.4547930435 -11.0188555556 -13.3756111111 NA 0.094488035162 0.739768842585 NA 0.094488035162 0.094488035162 0.351851851852 0.0 0.0 NC_045512.2:22331-22375 - 22331 22375 15 NotMaximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22330;45;0&s=-&p=30&e=30&w=0&f=22331-22375-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22331-22375&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -24.4053066667 0.9902 4.20777743746 -5.80004694389 -30.4210333333 6.01572666663 NA 0.0174377340062 0.0174377340062 NA 0.0174377340062 0.0174377340062 0.466666666667 0.0 0.0 NC_045512.2:1707-1736 + 1707 1736 10 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1706;30;0&p=30&e=30&w=0&f=1707-1736", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1707-1736&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -24.41103 1.0 1.93333333333 -12.6263948276 -15.60785 -8.80318 NA 0.706439850236 0.68114601986 NA 0.631443919909 0.606150089533 0.466666666667 0.0 0.0 NC_045512.2:23370-23510 + 23370 23510 47 Maximal AUA NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23369;141;0&p=30&e=30&w=0&f=23370-23510", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23370-23510&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -24.4326361702 1.0 2.80141843972 -8.72152329113 -23.6915191489 -0.741117021264 NA 0.460371154159 0.445095230343 NA 0.786811004395 0.343053882468 0.404255319149 0.349875930521 0.0 NC_045512.2:22454-22573 - 22454 22573 40 NotMaximal AGG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22453;120;0&s=-&p=30&e=30&w=0&f=22454-22573-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22454-22573&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -24.434265 1.0 3.24166666667 -7.53756246787 -33.3429675 8.9087025 NA 0.343053882468 0.42630310923 NA 0.888764447338 0.333954094091 0.333333333333 0.3125 0.0 NC_045512.2:24963-24995 - 24963 24995 11 NotMaximal AUU NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24962;33;0&s=-&p=30&e=30&w=0&f=24963-24995-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24963-24995&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -24.4446909091 1.0 1.60606060606 -15.2202792453 -23.6653181818 -0.779372727282 NA 1.0 1.0 NA 0.0 0.0 0.363636363636 0.0 0.727272727273 NC_045512.2:22682-22714 - 22682 22714 11 Maximal AGG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22681;33;0&s=-&p=30&e=30&w=0&f=22682-22714-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22682-22714&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -24.4676090909 1.0 2.0 -12.2338045455 -27.5077363636 3.04012727274 NA 0.318326550545 0.550144880352 NA 0.737493081556 0.0174377340062 0.363636363636 0.0 0.0 NC_045512.2:23201-23443 - 23201 23443 81 NotMaximal AUC NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23200;243;0&s=-&p=30&e=30&w=0&f=23201-23443-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23201-23443&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -24.5285123457 1.0 2.86008230453 -8.57615611512 -30.1272506173 5.59873827158 NA 0.364759889305 0.0 NA 0.659863258994 0.0 0.41975308642 0.09375 0.111111111111 NC_045512.2:5451-5546 - 5451 5546 32 Maximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5450;96;0&s=-&p=30&e=30&w=0&f=5451-5546-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5451-5546&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -24.5342375 1.0 1.625 -15.0979923077 -19.875559375 -4.658678125 NA 0.706439850236 0.085388246785 NA 0.494087579359 0.085388246785 0.375 0.304761904762 0.0 NC_045512.2:24087-24167 + 24087 24167 27 NotMaximal GUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24086;81;0&p=30&e=30&w=0&f=24087-24167", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24087-24167&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -24.5462555556 1.0 2.1975308642 -11.1699252809 -15.6668740741 -8.87938148153 NA 0.997883770145 0.812349015139 NA 0.831453687124 0.677053556894 0.41975308642 0.28125 0.358024691358 NC_045512.2:3813-3842 + 3813 3842 10 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3812;30;0&p=30&e=30&w=0&f=3813-3842", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3813-3842&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -24.54752 0.9269 2.471806685 -9.93100316015 -12.39203 -12.15549 0.621227413316 0.094488035162 0.510307667264 0.0 0.890405339411 0.0 0.3 0.0 0.0 NC_045512.2:8838-8894 - 8838 8894 19 Maximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8837;57;0&s=-&p=30&e=30&w=0&f=8838-8894-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8838-8894&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -24.5788263158 1.0 1.87719298246 -13.0933934579 -20.6445 -3.9343263158 NA 1.0 0.0174377340062 NA 0.963206902165 0.0174377340062 0.473684210526 0.971590909091 0.0 NC_045512.2:825-878 + 825 878 18 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;824;54;0&p=30&e=30&w=0&f=825-878", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:825-878&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -24.5955611111 1.0 1.66666666667 -14.7573366667 -14.4481166667 -10.1474444444 NA 0.0894774540127 0.912111346248 NA 0.632375061045 0.0174377340062 0.462962962963 0.0 0.0 NC_045512.2:19055-19099 - 19055 19099 15 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19054;45;0&s=-&p=30&e=30&w=0&f=19055-19099-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19055-19099&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -24.6034533333 1.0 1.71111111111 -14.3786415584 -25.19342 0.5899666667 NA 0.706439850236 1.0 NA 0.0174377340062 0.0174377340062 0.422222222222 0.0 0.0 NC_045512.2:19703-19744 - 19703 19744 14 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19702;42;0&s=-&p=30&e=30&w=0&f=19703-19744-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19703-19744&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -24.6091 1.0 1.57142857143 -15.6603363636 -25.3395142857 0.730414285714 NA 1.0 0.753140159531 NA 0.0 0.0 0.309523809524 0.0 0.0 NC_045512.2:24090-24167 + 24090 24167 26 NotMaximal AUA NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24089;78;0&p=30&e=30&w=0&f=24090-24167", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24090-24167&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -24.6096961538 1.0 2.17948717949 -11.291507647 -15.4174269231 -9.19226923072 NA 0.997883770145 0.812349015139 NA 0.807094253622 0.741917629823 0.410256410256 0.309523809524 0.333333333333 NC_045512.2:1650-1736 + 1650 1736 29 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1649;87;0&p=30&e=30&w=0&f=1650-1736", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1650-1736&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -24.6261482759 1.0 1.90804597701 -12.9064753012 -17.4452068966 -7.18094137935 NA 0.706439850236 0.226869607684 NA 0.094488035162 0.0174377340062 0.35632183908 0.365546218487 0.0 NC_045512.2:7960-7998 + 7960 7998 13 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7959;39;0&p=30&e=30&w=0&f=7960-7998", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7960-7998&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -24.6307923077 1.0 1.82051282051 -13.5295901408 -31.0787615385 6.44796923076 NA 0.368347712844 0.659876281947 NA 1.0 0.368347712844 0.410256410256 0.0 0.0 NC_045512.2:6825-6857 + 6825 6857 11 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6824;33;0&p=30&e=30&w=0&f=6825-6857", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6825-6857&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -24.6311363636 1.0 1.63636363636 -15.0523611111 -23.8986181818 -0.732518181782 NA 0.54829887677 0.648028650497 NA 0.777359596288 0.22944489663 0.333333333333 1.17857142857 0.121212121212 NC_045512.2:23286-23354 + 23286 23354 23 NotMaximal CUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23285;69;0&p=30&e=30&w=0&f=23286-23354", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23286-23354&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -24.6329391304 1.0 2.57971014493 -9.54872359549 -23.6253391304 -1.00759999997 NA 0.76950024418 0.368347712844 NA 0.492863421781 0.0 0.434782608696 0.306666666667 0.391304347826 NC_045512.2:21914-22189 - 21914 22189 92 NotMaximal AGG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21913;276;0&s=-&p=30&e=30&w=0&f=21914-22189-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21914-22189&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -24.6387282609 0.9423 5.22363770153 -4.71677586937 -35.3845576087 10.7458293478 NA 0.0174377340062 0.237646101253 NA 0.485831027185 0.0174377340062 0.304347826087 0.482798833819 0.0 NC_045512.2:28159-28188 + 28159 28188 10 NotMaximal AUU NearCognate ORF8 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28158;30;0&p=30&e=30&w=0&f=28159-28188", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28159-28188&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -24.64797 0.7064 5.04879030462 -4.88195558002 -15.17001 -9.47796 NA 0.465492430409 0.744095718704 NA 0.543480384177 0.249363503174 0.433333333333 0.0 0.0 NC_045512.2:8838-8885 - 8838 8885 16 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8837;48;0&s=-&p=30&e=30&w=0&f=8838-8885-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8838-8885&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -24.6533 1.0 1.8125 -13.6018206897 -20.1886875 -4.4646125 NA 1.0 0.0174377340062 NA 0.094488035162 0.0174377340062 0.479166666667 0.8 0.0 NC_045512.2:20681-20722 + 20681 20722 14 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20680;42;0&p=30&e=30&w=0&f=20681-20722", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20681-20722&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -24.6633928571 1.0 1.64285714286 -15.0125 -16.3658142857 -8.29757857139 NA 0.0174377340062 0.859671170438 NA 0.727442617614 0.0174377340062 0.333333333333 0.0 0.0 NC_045512.2:4518-4556 + 4518 4556 13 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4517;39;0&p=30&e=30&w=0&f=4518-4556", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4518-4556&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -24.6669846154 1.0 1.74358974359 -14.1472411765 -16.0503153846 -8.61666923078 0.673322480873 0.656181019046 0.912111346248 0.623063649683 1.0 0.656181019046 0.333333333333 0.0 0.0 NC_045512.2:23877-24038 + 23877 24038 54 NotMaximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23876;162;0&p=30&e=30&w=0&f=23877-24038", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23877-24038&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -24.6758962963 1.0 2.02469135802 -12.1874853659 -17.1467740741 -7.52912222223 NA 0.652410874166 0.390053719681 NA 0.49765261273 0.0174377340062 0.308641975309 0.0 0.0 NC_045512.2:1656-1736 + 1656 1736 27 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1655;81;0&p=30&e=30&w=0&f=1656-1736", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1656-1736&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -24.6987518519 1.0 1.98765432099 -12.4260801242 -18.0045222222 -6.69422962968 NA 0.706439850236 0.226869607684 NA 0.976815888003 0.226869607684 0.37037037037 0.361607142857 0.0 NC_045512.2:21338-21397 + 21338 21397 20 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21337;60;0&p=30&e=30&w=0&f=21338-21397", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21338-21397&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -24.714385 1.0 1.51666666667 -16.2951989011 -14.500315 -10.21407 NA 1.0 1.0 NA 0.49508383526 0.49508383526 0.283333333333 0.0 0.0 NC_045512.2:1821-1853 + 1821 1853 11 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1820;33;0&p=30&e=30&w=0&f=1821-1853", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1821-1853&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -24.7172 1.0 2.36363636364 -10.4572769231 -14.9633090909 -9.75389090909 NA 0.706439850236 0.877414943839 NA 0.70149763959 0.504541754843 0.393939393939 0.0 0.0 NC_045512.2:17417-17461 - 17417 17461 15 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17416;45;0&s=-&p=30&e=30&w=0&f=17417-17461-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17417-17461&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -24.77208 1.0 1.82222222222 -13.5944341463 -28.1722933333 3.40021333333 NA 0.343053882468 1.0 NA 0.71511964838 0.343053882468 0.511111111111 0.375 0.0 NC_045512.2:19841-19870 + 19841 19870 10 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19840;30;0&p=30&e=30&w=0&f=19841-19870", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19841-19870&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -24.78216 1.0 1.66666666667 -14.869296 -11.74365 -13.03851 NA 0.443083184112 1.0 NA 0.922825980791 0.386999837213 0.433333333333 0.0 0.0 NC_045512.2:23796-23849 + 23796 23849 18 NotMaximal AUU NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23795;54;0&p=30&e=30&w=0&f=23796-23849", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23796-23849&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -24.7931944444 1.0 2.44444444444 -10.1426704545 -19.2577055556 -5.53548888884 NA 0.778987465408 0.910291388572 NA 0.804779423734 0.49288295621 0.333333333333 0.0 0.0 NC_045512.2:24789-24854 - 24789 24854 22 NotMaximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24788;66;0&s=-&p=30&e=30&w=0&f=24789-24854-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24789-24854&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -24.8012181818 1.0 1.72727272727 -14.3586 -20.7008318182 -4.10038636362 NA 1.0 0.273768517011 NA 0.343053882468 0.0174377340062 0.439393939394 0.317307692308 0.787878787879 NC_045512.2:8589-8630 + 8589 8630 14 Maximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8588;42;0&p=30&e=30&w=0&f=8589-8630", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8589-8630&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -24.8026357143 1.0 2.80952380952 -8.82805677967 -20.11675 -4.6858857143 NA 0.094488035162 0.660908350969 NA 0.706439850236 0.094488035162 0.309523809524 0.0 0.0 NC_045512.2:24084-24167 + 24084 24167 28 NotMaximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24083;84;0&p=30&e=30&w=0&f=24084-24167", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24084-24167&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -24.818125 1.0 2.16666666667 -11.4545192308 -15.50145 -9.316675 NA 0.997883770145 0.299153508058 NA 0.0174377340062 0.0174377340062 0.416666666667 0.274509803922 0.380952380952 NC_045512.2:13063-13095 + 13063 13095 11 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13062;33;0&p=30&e=30&w=0&f=13063-13095", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13063-13095&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -24.8271363636 1.0 1.78787878788 -13.8863644068 -16.7295272727 -8.09760909087 NA 0.979550708123 0.916793097835 NA 0.0 0.0 0.393939393939 0.0 0.0 NC_045512.2:7971-8027 - 7971 8027 19 Maximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7970;57;0&s=-&p=30&e=30&w=0&f=7971-8027-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7971-8027&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -24.8652 1.0 1.59649122807 -15.5749054945 -23.6497526316 -1.21544736842 NA 0.912625752889 0.677278202832 NA 0.094488035162 0.094488035162 0.438596491228 0.452380952381 0.0 NC_045512.2:23907-24038 + 23907 24038 44 NotMaximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23906;132;0&p=30&e=30&w=0&f=23907-24038", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23907-24038&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -24.8863454545 1.0 1.93939393939 -12.832021875 -18.2575227273 -6.62882272723 NA 0.652410874166 0.390053719681 NA 0.923011557871 0.0174377340062 0.30303030303 0.0 0.0 NC_045512.2:22454-22555 - 22454 22555 34 NotMaximal AUU NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22453;102;0&s=-&p=30&e=30&w=0&f=22454-22555-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22454-22555&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -24.8903911765 1.0 3.37254901961 -7.38029040699 -32.9175294118 8.02713823526 NA 0.343053882468 0.42630310923 NA 0.527107276575 0.0 0.323529411765 0.383458646617 0.0 NC_045512.2:22638-22667 - 22638 22667 10 NotMaximal AUA NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22637;30;0&s=-&p=30&e=30&w=0&f=22638-22667-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22638-22667&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -24.89405 1.0 2.06666666667 -12.0455080645 -16.57245 -8.3216 NA 0.452648543057 0.839345596614 NA 0.0174377340062 0.0174377340062 0.4 0.0 0.0 NC_045512.2:1659-1736 + 1659 1736 26 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1658;78;0&p=30&e=30&w=0&f=1659-1736", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1659-1736&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -24.9226538462 1.0 2.03846153846 -12.2262075472 -18.4316884615 -6.49096538466 NA 0.706439850236 0.226869607684 NA 0.325069184438 0.226869607684 0.371794871795 0.371428571429 0.0 NC_045512.2:3009-3104 - 3009 3104 32 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3008;96;0&s=-&p=30&e=30&w=0&f=3009-3104-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3009-3104&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -24.93185 0.9458 2.7758586822 -8.98167120679 -28.715009375 3.783159375 NA 0.094488035162 0.70207064952 NA 0.094488035162 0.094488035162 0.385416666667 0.0 0.0 NC_045512.2:22454-22615 - 22454 22615 54 NotMaximal AUA NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22453;162;0&s=-&p=30&e=30&w=0&f=22454-22615-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22454-22615&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -24.932487037 1.0 3.27777777778 -7.60652146892 -32.82945 7.896962963 NA 0.343053882468 0.42630310923 NA 0.889490476966 0.0 0.33950617284 0.435483870968 0.0 NC_045512.2:23201-23437 - 23201 23437 79 Maximal AUG Canonical S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23200;237;0&s=-&p=30&e=30&w=0&f=23201-23437-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23201-23437&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -24.9397139241 1.0 2.85654008439 -8.73074180209 -30.5027025316 5.56298860755 0.796832166694 0.364759889305 0.0 0.0 1.0 0.0 0.417721518987 0.097210828548 0.113924050633 NC_045512.2:2484-2561 - 2484 2561 26 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2483;78;0&s=-&p=30&e=30&w=0&f=2484-2561-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:2484-2561&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -24.9502961538 1.0 2.08974358974 -11.9394055215 -25.8659769231 0.915680769277 0.094488035162 0.692554126648 0.085388246785 0.085388246785 0.883164577568 0.085388246785 0.397435897436 0.0 0.0 NC_045512.2:22314-22391 + 22314 22391 26 Maximal CUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22313;78;0&p=30&e=30&w=0&f=22314-22391", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22314-22391&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -24.9791 0.7997 3.98846200475 -6.26284015499 -21.5128076923 -3.46629230769 NA 0.094488035162 0.094488035162 NA 0.0174377340062 0.0174377340062 0.435897435897 0.0 0.0 NC_045512.2:20504-20554 - 20504 20554 17 Maximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20503;51;0&s=-&p=30&e=30&w=0&f=20504-20554-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20504-20554&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -24.9824647059 1.0 1.6862745098 -14.8151825581 -26.7517235294 1.76925882351 NA 0.986114276412 1.0 NA 0.378082370177 0.378082370177 0.196078431373 0.0 0.0 NC_045512.2:23898-24038 + 23898 24038 47 NotMaximal AAG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23897;141;0&p=30&e=30&w=0&f=23898-24038", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23898-24038&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -25.0061957447 1.0 2.00709219858 -12.4589173145 -18.7355212766 -6.2706744681 NA 0.652410874166 0.390053719681 NA 0.706439850236 0.0174377340062 0.297872340426 0.0 0.0 NC_045512.2:24096-24167 + 24096 24167 24 NotMaximal CUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24095;72;0&p=30&e=30&w=0&f=24096-24167", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24096-24167&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -25.0209833333 1.0 2.22222222222 -11.2594425 -15.3703458333 -9.65063749997 NA 0.997883770145 0.921943675728 NA 1.0 0.919827445873 0.430555555556 0.307692307692 0.277777777778 NC_045512.2:17999-18031 - 17999 18031 11 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;17998;33;0&s=-&p=30&e=30&w=0&f=17999-18031-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:17999-18031&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -25.0270181818 1.0 1.42424242424 -17.5721617021 -27.1634272727 2.13640909093 NA 0.890405339411 0.0174377340062 NA 0.0174377340062 0.0174377340062 0.424242424242 0.6875 0.0 NC_045512.2:20465-20533 + 20465 20533 23 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20464;69;0&p=30&e=30&w=0&f=20465-20533", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20465-20533&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -25.0272608696 1.0 1.69565217391 -14.7596666667 -14.9974304348 -10.0298304348 0.914335015465 1.0 0.814631287644 0.728966303109 1.0 0.814631287644 0.31884057971 0.657142857143 0.0 NC_045512.2:22454-22552 - 22454 22552 33 NotMaximal AGG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22453;99;0&s=-&p=30&e=30&w=0&f=22454-22552-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22454-22552&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -25.0678030303 1.0 3.41414141414 -7.34234467456 -31.9405575758 6.87275454546 NA 0.343053882468 0.42630310923 NA 0.763070161159 0.333954094091 0.333333333333 0.372180451128 0.0 NC_045512.2:23883-24038 + 23883 24038 52 NotMaximal AAG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23882;156;0&p=30&e=30&w=0&f=23883-24038", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23883-24038&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -25.0683384615 1.0 2.02564102564 -12.3755088607 -18.07215 -6.9961884615 NA 0.652410874166 0.390053719681 NA 1.0 0.0174377340062 0.307692307692 0.0 0.0 NC_045512.2:4515-4556 + 4515 4556 14 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4514;42;0&p=30&e=30&w=0&f=4515-4556", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4515-4556&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -25.0687785714 1.0 1.71428571429 -14.6234541667 -15.2996714286 -9.76910714283 NA 0.656181019046 0.912111346248 NA 0.617209832329 0.323649682566 0.309523809524 0.0 0.0 NC_045512.2:22970-23005 - 22970 23005 12 NotMaximal AUU NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22969;36;0&s=-&p=30&e=30&w=0&f=22970-23005-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22970-23005&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -25.0740166667 0.8213 5.93934353427 -4.22168149089 -21.5701333333 -3.50388333337 NA 0.411456942862 0.323906885886 NA 0.0174377340062 0.0174377340062 0.444444444444 0.571428571429 0.0 NC_045512.2:1653-1736 + 1653 1736 28 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1652;84;0&p=30&e=30&w=0&f=1653-1736", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1653-1736&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -25.0855821429 1.0 1.96428571429 -12.7708418182 -17.3689714286 -7.71661071433 NA 0.706439850236 0.226869607684 NA 0.831873677356 0.226869607684 0.369047619048 0.352941176471 0.0 NC_045512.2:8155-8190 + 8155 8190 12 Maximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8154;36;0&p=30&e=30&w=0&f=8155-8190", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8155-8190&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -25.0899416667 1.0 2.16666666667 -11.5799730769 -34.94765 9.8577083333 NA 0.65132996907 0.890405339411 NA 0.485336154973 0.485336154973 0.416666666667 0.642857142857 0.0 NC_045512.2:19055-19135 - 19055 19135 27 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19054;81;0&s=-&p=30&e=30&w=0&f=19055-19135-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19055-19135&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -25.1082555556 1.0 1.58024691358 -15.8888179688 -24.9289555556 -0.179300000044 NA 0.706439850236 1.0 NA 0.0174377340062 0.0174377340062 0.37037037037 0.0 0.0 NC_045512.2:23913-24038 + 23913 24038 42 NotMaximal AAG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23912;126;0&p=30&e=30&w=0&f=23913-24038", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23913-24038&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -25.1143238095 1.0 1.98412698413 -12.6576192 -19.4408571429 -5.67346666664 NA 0.652410874166 0.390053719681 NA 0.706439850236 0.0174377340062 0.293650793651 0.0 0.0 NC_045512.2:21356-21397 + 21356 21397 14 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21355;42;0&p=30&e=30&w=0&f=21356-21397", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21356-21397&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -25.1151357143 1.0 1.61904761905 -15.5122897059 -11.7252428571 -13.3898928572 NA 1.0 1.0 NA 0.628712355527 0.628712355527 0.285714285714 0.0 0.0 NC_045512.2:3020-3049 - 3020 3049 10 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3019;30;0&s=-&p=30&e=30&w=0&f=3020-3049-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3020-3049&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -25.11714 0.9975 1.97531673687 -12.7155000164 -35.28716 10.17002 NA 0.903662705518 1.0 NA 0.645759400944 0.549422106463 0.366666666667 0.0 0.0 NC_045512.2:28066-28188 + 28066 28188 41 Maximal UUG NearCognate ORF8 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28065;123;0&p=30&e=30&w=0&f=28066-28188", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28066-28188&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -25.1251926829 0.6961 6.1653861345 -4.0752018016 -20.1986634146 -4.92652926827 NA 0.465492430409 0.552593195507 NA 0.094488035162 0.0174377340062 0.382113821138 0.670909090909 0.0 NC_045512.2:22590-22619 - 22590 22619 10 Maximal AAG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22589;30;0&s=-&p=30&e=30&w=0&f=22590-22619-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22590-22619&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -25.15206 1.0 3.76666666667 -6.6775380531 -22.25623 -2.89583 NA 1.0 0.653032720169 NA 1.0 0.653032720169 0.433333333333 0.75 0.0 NC_045512.2:22638-22682 - 22638 22682 15 Maximal AUG Canonical S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22637;45;0&s=-&p=30&e=30&w=0&f=22638-22682-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22638-22682&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -25.1557133333 1.0 2.04444444444 -12.304425 -19.46866 -5.6870533333 0.313957349829 0.452648543057 0.820973465733 0.0174377340062 0.986114276412 0.364759889305 0.377777777778 0.642857142857 0.0 NC_045512.2:19505-19537 + 19505 19537 11 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19504;33;0&p=30&e=30&w=0&f=19505-19537", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19505-19537&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -25.1610636364 1.0 1.75757575758 -14.3157775862 -11.0782272727 -14.0828363637 0.658463291551 0.987637961908 0.384258505616 0.35896467524 1.0 0.384258505616 0.333333333333 1.1 0.0 NC_045512.2:2484-2525 - 2484 2525 14 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2483;42;0&s=-&p=30&e=30&w=0&f=2484-2525-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:2484-2525&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -25.1881071429 1.0 2.33333333333 -10.7949030612 -28.7524857143 3.56437857139 NA 0.692554126648 0.717053556894 NA 0.460123718053 0.245352433664 0.428571428571 0.0 0.0 NC_045512.2:19055-19138 - 19055 19138 28 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19054;84;0&s=-&p=30&e=30&w=0&f=19055-19138-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19055-19138&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -25.1955 1.0 1.65476190476 -15.226057554 -24.6369428571 -0.558557142857 NA 0.706439850236 1.0 NA 0.0174377340062 0.0174377340062 0.357142857143 0.0 0.0 NC_045512.2:1365-1424 - 1365 1424 20 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1364;60;0&s=-&p=30&e=30&w=0&f=1365-1424-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1365-1424&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -25.207695 1.0 2.03333333333 -12.3972270492 -20.381265 -4.82643 NA 0.494295946606 1.0 NA 0.094488035162 0.0174377340062 0.4 0.416666666667 0.0 NC_045512.2:13066-13095 + 13066 13095 10 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13065;30;0&p=30&e=30&w=0&f=13066-13095", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13066-13095&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -25.21959 1.0 1.86666666667 -13.5104946429 -17.30253 -7.91706 NA 0.979550708123 0.916793097835 NA 0.0174377340062 0.0174377340062 0.433333333333 0.0 0.0 NC_045512.2:24663-24740 + 24663 24740 26 NotMaximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24662;78;0&p=30&e=30&w=0&f=24663-24740", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24663-24740&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -25.2452076923 1.0 1.73076923077 -14.58612 -16.8968423077 -8.34836538461 NA 0.343053882468 0.542353898747 NA 0.960413478756 0.0 0.423076923077 0.0 0.410256410256 NC_045512.2:6042-6086 + 6042 6086 15 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6041;45;0&p=30&e=30&w=0&f=6042-6086", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6042-6086&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -25.25226 0.9813 1.94753182676 -12.966288742 -18.0741666667 -7.17809333333 NA 0.697821911118 0.928744912909 NA 0.462132508546 0.297405176624 0.2 0.0 0.0 NC_045512.2:24093-24167 + 24093 24167 25 NotMaximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24092;75;0&p=30&e=30&w=0&f=24093-24167", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24093-24167&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -25.268248 1.0 2.17333333333 -11.6264944785 -16.1528 -9.115448 NA 0.997883770145 0.812349015139 NA 0.0174377340062 0.0174377340062 0.426666666667 0.297619047619 0.306666666667 NC_045512.2:7209-7256 - 7209 7256 16 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7208;48;0&s=-&p=30&e=30&w=0&f=7209-7256-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7209-7256&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -25.2758375 1.0 1.95833333333 -12.9068106383 -28.06406875 2.78823125 1.0 0.094488035162 0.797082858538 0.094488035162 1.0 0.094488035162 0.395833333333 0.0 0.0 NC_045512.2:798-878 + 798 878 27 NotMaximal ACG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;797;81;0&p=30&e=30&w=0&f=798-878", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:798-878&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -25.2781037037 1.0 1.71604938272 -14.7304057554 -15.4167851852 -9.86131851851 NA 0.0894774540127 0.544821748331 NA 1.0 0.0174377340062 0.506172839506 0.581339712919 0.0 NC_045512.2:22644-22721 + 22644 22721 26 NotMaximal GUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22643;78;0&p=30&e=30&w=0&f=22644-22721", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22644-22721&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -25.2954576923 1.0 2.02564102564 -12.4876310127 -22.44635 -2.8491076923 NA 0.706439850236 1.0 NA 0.865111509035 0.68114601986 0.346153846154 0.433333333333 0.0 NC_045512.2:1638-1736 + 1638 1736 33 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1637;99;0&p=30&e=30&w=0&f=1638-1736", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1638-1736&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -25.3266787879 1.0 1.88888888889 -13.4082417112 -16.2944151515 -9.03226363638 NA 0.706439850236 0.226869607684 NA 0.975494058278 0.226869607684 0.353535353535 0.323529411765 0.0 NC_045512.2:23901-24038 + 23901 24038 46 NotMaximal AAG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23900;138;0&p=30&e=30&w=0&f=23901-24038", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23901-24038&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -25.3323152174 1.0 1.99275362319 -12.7122163636 -18.2284173913 -7.1038978261 NA 0.652410874166 0.390053719681 NA 1.0 0.0174377340062 0.297101449275 0.0 0.0 NC_045512.2:3876-3908 + 3876 3908 11 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3875;33;0&p=30&e=30&w=0&f=3876-3908", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3876-3908&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -25.3364636364 0.9918 4.06303719654 -6.23584338779 -18.9816 -6.3548636364 NA 0.220345108253 0.929291876933 NA 0.865899397688 0.0 0.363636363636 0.0 0.0 NC_045512.2:8277-8312 + 8277 8312 12 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8276;36;0&p=30&e=30&w=0&f=8277-8312", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8277-8312&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -25.3404666667 1.0 1.25 -20.2723733334 -10.4089416667 -14.931525 NA 1.0 0.811704378968 NA 0.634562917141 0.42889142113 0.277777777778 0.0 0.0 NC_045512.2:4911-4949 + 4911 4949 13 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4910;39;0&p=30&e=30&w=0&f=4911-4949", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4911-4949&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -25.3641153846 1.0 2.35897435897 -10.7521793478 -26.7846769231 1.42056153848 NA 0.368347712844 0.3371902979 NA 0.885394758261 0.0894774540127 0.307692307692 0.0 0.0 NC_045512.2:1770-1853 + 1770 1853 28 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1769;84;0&p=30&e=30&w=0&f=1770-1853", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1770-1853&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -25.3920678571 1.0 2.38095238095 -10.6646685 -19.9037928571 -5.48827499996 NA 0.706439850236 0.401328341201 NA 0.912111346248 0.401328341201 0.321428571429 0.0 0.0 NC_045512.2:19838-19870 + 19838 19870 11 Maximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19837;33;0&p=30&e=30&w=0&f=19838-19870", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19838-19870&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -25.3969545455 1.0 1.66666666667 -15.2381727273 -11.7135181818 -13.6834363637 NA 0.443083184112 1.0 NA 0.848090509523 0.436744261761 0.393939393939 0.0 0.0 NC_045512.2:19550-19624 + 19550 19624 25 Maximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19549;75;0&p=30&e=30&w=0&f=19550-19624", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19550-19624&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -25.448024 1.0 1.76 -14.4591045455 -17.003404 -8.44462 NA 1.0 1.0 NA 0.894094090835 0.894094090835 0.36 0.0 0.0 NC_045512.2:29031-29081 + 29031 29081 17 NotMaximal AGG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;29030;51;0&p=30&e=30&w=0&f=29031-29081", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:29031-29081&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -25.4914117647 1.0 1.80392156863 -14.1311086956 -18.1858647059 -7.30554705882 NA 0.0174377340062 1.0 NA 1.0 0.0174377340062 0.450980392157 0.784615384615 0.0 NC_045512.2:2484-2513 - 2484 2513 10 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2483;30;0&s=-&p=30&e=30&w=0&f=2484-2513-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:2484-2513&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -25.5028 1.0 2.2 -11.5921818182 -28.18174 2.67894 NA 0.692554126648 0.975246622172 NA 0.885196158229 0.5686504965 0.466666666667 0.0 0.0 NC_045512.2:3009-3149 - 3009 3149 47 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3008;141;0&s=-&p=30&e=30&w=0&f=3009-3149-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3009-3149&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -25.5138638298 0.9619 2.56002993162 -9.96623653288 -27.0883085106 1.57444468084 NA 0.094488035162 0.873748982582 NA 0.915673123881 0.0174377340062 0.375886524823 0.0 0.0 NC_045512.2:3009-3143 - 3009 3143 45 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3008;135;0&s=-&p=30&e=30&w=0&f=3009-3143-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3009-3143&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -25.5175222222 0.9602 2.60714237303 -9.78754458758 -27.2094755556 1.69195333336 NA 0.094488035162 0.873748982582 NA 0.6139378154 0.094488035162 0.377777777778 0.0 0.0 NC_045512.2:9186-9239 - 9186 9239 18 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;9185;54;0&s=-&p=30&e=30&w=0&f=9186-9239-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:9186-9239&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -25.5374444444 1.0 1.5 -17.0249629629 -16.1683555556 -9.36908888884 NA 0.912111346248 0.673065277552 NA 0.613742471105 0.374175484291 0.425925925926 0.45 0.0 NC_045512.2:2826-2867 + 2826 2867 14 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2825;42;0&p=30&e=30&w=0&f=2826-2867", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:2826-2867&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -25.5383 1.0 1.95238095238 -13.0805926829 -23.76475 -1.77355 0.87391828097 0.094488035162 0.899824190135 0.085388246785 1.0 0.094488035162 0.452380952381 0.477272727273 0.0 NC_045512.2:1782-1853 + 1782 1853 24 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1781;72;0&p=30&e=30&w=0&f=1782-1853", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1782-1853&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -25.54645 1.0 2.58333333333 -9.8889483871 -19.8209708333 -5.72547916667 NA 0.706439850236 0.401328341201 NA 0.637118671659 0.338547940746 0.319444444444 0.0 0.0 NC_045512.2:3020-3055 - 3020 3055 12 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3019;36;0&s=-&p=30&e=30&w=0&f=3020-3055-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3020-3055&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -25.55725 0.9979 2.09054172517 -12.2251805321 -32.4123583333 6.85510833333 NA 0.903662705518 1.0 NA 0.390053719681 0.390053719681 0.388888888889 0.0 0.0 NC_045512.2:4512-4556 + 4512 4556 15 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4511;45;0&p=30&e=30&w=0&f=4512-4556", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4512-4556&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -25.59992 1.0 1.66666666667 -15.359952 -14.1641933333 -11.4357266667 NA 0.656181019046 0.912111346248 NA 0.854488035162 0.59855770796 0.311111111111 0.0 0.0 NC_045512.2:25726-25773 - 25726 25773 16 NotMaximal AAG NearCognate ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25725;48;0&s=-&p=30&e=30&w=0&f=25726-25773-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25726-25773&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -25.6015375 1.0 3.39583333333 -7.53910306748 -26.59376875 0.99223125 NA 0.484610125346 0.526755656845 NA 0.0174377340062 0.0174377340062 0.3125 0.0 0.0 NC_045512.2:1926-1964 + 1926 1964 13 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1925;39;0&p=30&e=30&w=0&f=1926-1964", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1926-1964&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -25.6032384615 1.0 2.38461538462 -10.7368419355 -19.4730923077 -6.13014615381 NA 0.548012371805 0.912111346248 NA 0.094488035162 0.094488035162 0.461538461538 0.962962962963 0.0 NC_045512.2:4770-4811 - 4770 4811 14 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4769;42;0&s=-&p=30&e=30&w=0&f=4770-4811-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4770-4811&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -25.6195928571 1.0 2.07142857143 -12.3680793103 -23.9327928571 -1.68679999996 NA 0.668126322644 0.924004558034 NA 0.99356666124 0.612378316783 0.404761904762 0.0 0.0 NC_045512.2:23201-23251 - 23201 23251 17 NotMaximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23200;51;0&s=-&p=30&e=30&w=0&f=23201-23251-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23201-23251&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -25.6208941176 1.0 3.17647058824 -8.06583703702 -30.6939823529 5.07308823534 NA 0.364759889305 0.563363177601 NA 1.0 0.0 0.411764705882 0.0 0.0 NC_045512.2:1155-1193 - 1155 1193 13 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1154;39;0&s=-&p=30&e=30&w=0&f=1155-1193-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1155-1193&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -25.6296923077 1.0 1.94871794872 -13.1520789474 -17.7567307692 -7.87296153847 NA 0.912111346248 0.958665147322 NA 0.744505941722 0.726133810842 0.461538461538 0.962962962963 0.0 NC_045512.2:23754-23846 - 23754 23846 31 NotMaximal GUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23753;93;0&s=-&p=30&e=30&w=0&f=23754-23846-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23754-23846&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -25.6358064516 1.0 2.01075268817 -12.7493582888 -27.2675032258 1.63169677421 NA 0.589034673612 0.0174377340062 NA 0.715106625427 0.0174377340062 0.365591397849 0.0 0.0 NC_045512.2:23754-23849 - 23754 23849 32 NotMaximal AUU NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23753;96;0&s=-&p=30&e=30&w=0&f=23754-23849-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23754-23849&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -25.686296875 1.0 2.07291666667 -12.391379397 -26.948309375 1.2620125 NA 0.589034673612 0.0174377340062 NA 0.458818167019 0.0174377340062 0.354166666667 0.0 0.0 NC_045512.2:22838-22951 - 22838 22951 38 NotMaximal AGG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22837;114;0&s=-&p=30&e=30&w=0&f=22838-22951-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22838-22951&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -25.6945894737 0.936 5.04216361577 -5.09594519967 -34.0562710526 8.36168157893 NA 0.434598730262 0.61271691356 NA 0.785173368061 0.220345108253 0.342105263158 0.304812834225 0.0 NC_045512.2:28665-28700 - 28665 28700 12 Maximal UUG NearCognate N =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28664;36;0&s=-&p=30&e=30&w=0&f=28665-28700-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28665-28700&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -25.6953583333 1.0 1.55555555556 -16.5184446428 -19.1864166667 -6.50894166663 NA 0.332615985675 0.611193228064 NA 0.489539313039 0.249441640892 0.472222222222 0.0 0.0 NC_045512.2:7210-7269 + 7210 7269 20 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7209;60;0&p=30&e=30&w=0&f=7210-7269", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7210-7269&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -25.727475 1.0 1.91666666667 -13.4230304348 -22.424575 -3.3029 0.094488035162 0.368347712844 0.094488035162 0.094488035162 0.094488035162 0.094488035162 0.366666666667 0.0 0.0 NC_045512.2:24354-24395 - 24354 24395 14 Maximal GUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24353;42;0&s=-&p=30&e=30&w=0&f=24354-24395-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24354-24395&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -25.7300357143 1.0 2.07142857143 -12.4213965517 -25.5492857143 -0.180750000014 NA 0.668520266971 0.0 NA 0.987637961908 0.0 0.428571428571 0.0 0.380952380952 NC_045512.2:24891-24947 + 24891 24947 19 Maximal AUG Canonical S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24890;57;0&p=30&e=30&w=0&f=24891-24947", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24891-24947&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -25.7750789474 1.0 1.9298245614 -13.3561772727 -17.4483157895 -8.32676315793 0.0883998046557 0.575549405828 0.590656031255 0.0174377340062 0.614930815562 0.297095881491 0.368421052632 0.0 0.280701754386 NC_045512.2:23280-23354 + 23280 23354 25 NotMaximal CUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23279;75;0&p=30&e=30&w=0&f=23280-23354", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23280-23354&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -25.792972 1.0 2.6 -9.92037384615 -23.09816 -2.694812 NA 0.76950024418 0.368347712844 NA 0.797665635683 0.094488035162 0.44 0.275735294118 0.36 NC_045512.2:28084-28188 + 28084 28188 35 NotMaximal AGG NearCognate ORF8 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28083;105;0&p=30&e=30&w=0&f=28084-28188", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28084-28188&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -25.8012857143 0.6943 6.15727760519 -4.19037233153 -19.7379971429 -6.06328857144 NA 0.465492430409 0.619925118021 NA 0.330633241087 0.0174377340062 0.371428571429 0.555555555556 0.0 NC_045512.2:23283-23354 + 23283 23354 24 Maximal AUG Canonical S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23282;72;0&p=30&e=30&w=0&f=23283-23354", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23283-23354&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -25.8021458333 1.0 2.59722222222 -9.93451604277 -24.0810458333 -1.72109999997 0.0174377340062 0.76950024418 0.368347712844 0.0174377340062 0.597633078301 0.094488035162 0.430555555556 0.3 0.375 NC_045512.2:2389-2427 + 2389 2427 13 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2388;39;0&p=30&e=30&w=0&f=2389-2427", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:2389-2427&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -25.8021461538 1.0 2.20512820513 -11.7009732558 -29.3978615385 3.59571538466 NA 0.094488035162 0.862933420153 NA 0.094488035162 0.085388246785 0.410256410256 0.65 0.0 NC_045512.2:1773-1853 + 1773 1853 27 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1772;81;0&p=30&e=30&w=0&f=1773-1853", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1773-1853&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -25.804037037 1.0 2.44444444444 -10.5561969697 -21.052962963 -4.75107407404 NA 0.706439850236 0.401328341201 NA 1.0 0.401328341201 0.320987654321 0.0 0.0 NC_045512.2:13197-13226 - 13197 13226 10 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;13196;30;0&s=-&p=30&e=30&w=0&f=13197-13226-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:13197-13226&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -25.80842 1.0 1.13333333333 -22.7721352941 -21.55514 -4.25328 NA 0.364759889305 0.937336806121 NA 1.0 0.364759889305 0.466666666667 0.625 0.133333333333 NC_045512.2:1794-1853 + 1794 1853 20 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1793;60;0&p=30&e=30&w=0&f=1794-1853", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1794-1853&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -25.818015 1.0 2.75 -9.38836909091 -21.216615 -4.6014 NA 0.706439850236 0.401328341201 NA 0.976900537197 0.35036952629 0.333333333333 0.0 0.0 NC_045512.2:21979-22026 + 21979 22026 16 Maximal AUU NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21978;48;0&p=30&e=30&w=0&f=21979-22026", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21979-22026&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -25.851925 0.6907 5.75440607603 -4.49254443611 -32.69131875 6.83939375 NA 0.593032720169 0.460084649194 NA 0.309510011395 0.0174377340062 0.3125 0.0 0.0 NC_045512.2:24330-24437 + 24330 24437 36 Maximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24329;108;0&p=30&e=30&w=0&f=24330-24437", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24330-24437&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -25.866375 1.0 1.89814814815 -13.6271634146 -17.0118888889 -8.85448611111 NA 0.854488035162 0.565577079603 NA 0.724942210646 0.348930489989 0.388888888889 0.0 0.361111111111 NC_045512.2:22331-22360 - 22331 22360 10 NotMaximal AUA NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22330;30;0&s=-&p=30&e=30&w=0&f=22331-22360-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22331-22360&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -25.87076 0.9853 4.67833282285 -5.52991011534 -24.03788 -1.83288 NA 0.0174377340062 0.0174377340062 NA 0.527068207716 0.0174377340062 0.5 0.0 0.0 NC_045512.2:22454-22525 - 22454 22525 24 NotMaximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22453;72;0&s=-&p=30&e=30&w=0&f=22454-22525-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22454-22525&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -25.918825 1.0 3.19444444444 -8.11371913043 -33.0673625 7.1485375 NA 0.343053882468 0.465710564871 NA 0.352697379131 0.0 0.333333333333 0.503496503497 0.0 NC_045512.2:22656-22721 + 22656 22721 22 NotMaximal AUU NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22655;66;0&p=30&e=30&w=0&f=22656-22721", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22656-22721&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -25.94675 1.0 2.10606060606 -12.3200395683 -24.2658818182 -1.68086818182 NA 0.706439850236 1.0 NA 0.503936187531 0.298264691519 0.333333333333 0.589285714286 0.0 NC_045512.2:28129-28188 + 28129 28188 20 NotMaximal AUA NearCognate ORF8 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28128;60;0&p=30&e=30&w=0&f=28129-28188", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28129-28188&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -25.96267 0.6862 5.40837385097 -4.80045771898 -19.375055 -6.587615 NA 0.465492430409 0.688100276738 NA 0.419534429432 0.271762982256 0.35 0.0 0.0 NC_045512.2:3801-3842 + 3801 3842 14 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3800;42;0&p=30&e=30&w=0&f=3801-3842", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3801-3842&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -25.9891571429 0.9478 2.76557620357 -9.39737516882 -14.0041285714 -11.9850285715 NA 0.094488035162 0.510307667264 NA 0.67075695914 0.0 0.261904761905 0.0 0.0 NC_045512.2:2811-2867 + 2811 2867 19 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2810;57;0&p=30&e=30&w=0&f=2811-2867", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:2811-2867&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -25.9911684211 1.0 1.94736842105 -13.3468162162 -20.2457684211 -5.74540000005 NA 0.094488035162 0.697971675077 NA 0.551912746215 0.094488035162 0.385964912281 0.487179487179 0.0 NC_045512.2:3009-3098 - 3009 3098 30 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3008;90;0&s=-&p=30&e=30&w=0&f=3009-3098-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3009-3098&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -26.00428 0.9489 2.81137167951 -9.24967701338 -29.2980233333 3.29374333333 NA 0.094488035162 0.70207064952 NA 0.912111346248 0.094488035162 0.388888888889 0.0 0.0 NC_045512.2:22317-22391 + 22317 22391 25 NotMaximal GUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22316;75;0&p=30&e=30&w=0&f=22317-22391", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22317-22391&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -26.011248 0.8279 4.00688914412 -6.49163155367 -22.288856 -3.722392 NA 0.094488035162 0.094488035162 NA 0.094488035162 0.094488035162 0.426666666667 0.0 0.0 NC_045512.2:6954-6992 - 6954 6992 13 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6953;39;0&s=-&p=30&e=30&w=0&f=6954-6992-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6954-6992&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -26.0188769231 1.0 1.66666666667 -15.6113261539 -16.4829615385 -9.53591538464 NA 0.0174377340062 0.620664170601 NA 0.849435129416 0.0174377340062 0.282051282051 0.0 0.0 NC_045512.2:1788-1853 + 1788 1853 22 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1787;66;0&p=30&e=30&w=0&f=1788-1853", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1788-1853&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -26.0258772727 1.0 2.69696969697 -9.65004438201 -21.0264136364 -4.99946363634 NA 0.706439850236 0.401328341201 NA 0.423757121927 0.0 0.30303030303 0.0 0.0 NC_045512.2:1155-1220 - 1155 1220 22 Maximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1154;66;0&s=-&p=30&e=30&w=0&f=1155-1220-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1155-1220&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -26.0556681818 1.0 1.86363636364 -13.9810902439 -21.7446181818 -4.31104999998 NA 0.912111346248 0.498420966954 NA 0.390053719681 0.390053719681 0.424242424242 0.676923076923 0.0 NC_045512.2:7887-7931 - 7887 7931 15 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7886;45;0&s=-&p=30&e=30&w=0&f=7887-7931-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7887-7931&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -26.0695466667 1.0 1.86666666667 -13.9658285714 -22.6343733333 -3.43517333337 NA 1.0 0.293524336643 NA 0.716050789517 0.253175972652 0.266666666667 0.0 0.0 NC_045512.2:28087-28188 + 28087 28188 34 NotMaximal CUG NearCognate ORF8 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28086;102;0&p=30&e=30&w=0&f=28087-28188", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28087-28188&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -26.1153823529 0.694 6.10244922475 -4.27949195333 -19.9636529412 -6.15172941172 NA 0.465492430409 0.619925118021 NA 0.628624450594 0.296890769982 0.362745098039 0.607142857143 0.0 NC_045512.2:22838-22885 - 22838 22885 16 NotMaximal AAG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22837;48;0&s=-&p=30&e=30&w=0&f=22838-22885-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22838-22885&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -26.1379125 0.9619 3.74327120968 -6.98263925746 -34.69194375 8.55403125 NA 0.434598730262 0.693120625102 NA 0.427790981605 0.27890932769 0.375 0.592592592593 0.0 NC_045512.2:1155-1199 - 1155 1199 15 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1154;45;0&s=-&p=30&e=30&w=0&f=1155-1199-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1155-1199&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -26.1527866667 1.0 2.0 -13.0763933333 -19.69214 -6.4606466667 NA 0.912111346248 0.958665147322 NA 0.432062510174 0.432062510174 0.422222222222 1.0 0.0 NC_045512.2:5178-5213 + 5178 5213 12 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;5177;36;0&p=30&e=30&w=0&f=5178-5213", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:5178-5213&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -26.1706416667 1.0 1.52777777778 -17.1298745455 -14.0853166667 -12.085325 NA 1.0 0.706439850236 NA 0.536552173205 0.536552173205 0.444444444444 0.0 0.0 NC_045512.2:1740-1853 + 1740 1853 38 Maximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1739;114;0&p=30&e=30&w=0&f=1740-1853", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1740-1853&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -26.19925 1.0 2.39473684211 -10.9403461538 -17.9610026316 -8.23824736842 NA 0.706439850236 0.401328341201 NA 0.42911281133 0.376822399479 0.30701754386 0.0 0.0 NC_045512.2:28126-28188 + 28126 28188 21 NotMaximal AUU NearCognate ORF8 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28125;63;0&p=30&e=30&w=0&f=28126-28188", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28126-28188&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -26.2332714286 0.6871 5.39799153297 -4.85982078119 -19.8845666667 -6.34870476193 NA 0.465492430409 0.688100276738 NA 0.523897118672 0.0174377340062 0.333333333333 0.0 0.0 NC_045512.2:24388-24450 + 24388 24450 21 Maximal AAG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24387;63;0&p=30&e=30&w=0&f=24388-24450", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24388-24450&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -26.2677857143 1.0 1.66666666667 -15.7606714286 -22.3849285714 -3.88285714287 NA 0.764727331923 0.597011232297 NA 0.221676705193 0.0174377340062 0.396825396825 0.403846153846 0.619047619048 NC_045512.2:24354-24386 - 24354 24386 11 NotMaximal CUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24353;33;0&s=-&p=30&e=30&w=0&f=24354-24386-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24354-24386&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -26.2841545455 1.0 2.0 -13.1420772728 -26.0527363636 -0.231418181864 NA 0.668520266971 0.0 NA 0.878993976884 0.0 0.393939393939 0.0 0.212121212121 NC_045512.2:2577-2612 - 2577 2612 12 Maximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2576;36;0&s=-&p=30&e=30&w=0&f=2577-2612-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:2577-2612&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -26.3245666667 1.0 2.36111111111 -11.1492282353 -18.2840416667 -8.04052500003 NA 0.477942373433 0.390053719681 NA 0.59462152043 0.094488035162 0.5 0.0 0.0 NC_045512.2:19505-19549 - 19505 19549 15 Maximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19504;45;0&s=-&p=30&e=30&w=0&f=19505-19549-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19505-19549&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -26.34566 1.0 1.42222222222 -18.5242921875 -26.5325466667 0.186886666667 NA 0.0174377340062 0.987637961908 NA 0.452876444734 0.0174377340062 0.355555555556 0.714285714286 0.0 NC_045512.2:2105-2149 - 2105 2149 15 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2104;45;0&s=-&p=30&e=30&w=0&f=2105-2149-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:2105-2149&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -26.3522066667 1.0 3.17777777778 -8.29265244756 -31.0695266667 4.71731999997 NA 0.413120625102 0.47036952629 NA 0.094488035162 0.094488035162 0.377777777778 0.75 0.0 NC_045512.2:4350-4427 - 4350 4427 26 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4349;78;0&s=-&p=30&e=30&w=0&f=4350-4427-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4350-4427&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -26.3623 1.0 1.76923076923 -14.9004304348 -24.2131846154 -2.14911538462 NA 0.87713495035 0.424678495849 NA 0.656640078138 0.362008790493 0.384615384615 0.722222222222 0.0 NC_045512.2:22434-22469 + 22434 22469 12 Maximal GUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22433;36;0&p=30&e=30&w=0&f=22434-22469", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22434-22469&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -26.373425 1.0 3.22222222222 -8.18485603448 -26.3975333333 0.0241083333333 NA 0.268679798144 0.500104183624 NA 0.292554126648 0.094488035162 0.472222222222 0.514285714286 0.0 NC_045512.2:19028-19075 + 19028 19075 16 Maximal ACG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19027;48;0&p=30&e=30&w=0&f=19028-19075", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19028-19075&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -26.3978875 1.0 1.5 -17.5985916667 -17.35100625 -9.04688125 NA 0.755943350155 0.638600032557 NA 1.0 0.488653752238 0.416666666667 0.48 0.0 NC_045512.2:2105-2152 - 2105 2152 16 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2104;48;0&s=-&p=30&e=30&w=0&f=2105-2152-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:2105-2152&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -26.44549375 1.0 3.3125 -7.98354528302 -30.174725 3.72923125 NA 0.413120625102 0.47036952629 NA 0.094488035162 0.094488035162 0.375 0.666666666667 0.0 NC_045512.2:3009-3095 - 3009 3095 29 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3008;87;0&s=-&p=30&e=30&w=0&f=3009-3095-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3009-3095&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -26.4555344828 0.9502 2.87051010385 -9.21631818935 -29.0852482759 2.62971379306 0.085388246785 0.094488035162 0.70207064952 0.085388246785 0.373351782517 0.094488035162 0.390804597701 0.0 0.0 NC_045512.2:22440-22469 + 22440 22469 10 NotMaximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22439;30;0&p=30&e=30&w=0&f=22440-22469", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22440-22469&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -26.47778 1.0 3.36666666667 -7.86468712871 -28.4891 2.01132 NA 0.268679798144 0.500104183624 NA 0.739540940908 0.094488035162 0.433333333333 0.75 0.0 NC_045512.2:1674-1736 + 1674 1736 21 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1673;63;0&p=30&e=30&w=0&f=1674-1736", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1674-1736&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -26.4870761905 1.0 2.15873015873 -12.2697485294 -18.6121190476 -7.87495714288 0.812029952792 0.706439850236 0.52878072603 0.478958163764 1.0 0.52878072603 0.396825396825 0.403846153846 0.0 NC_045512.2:20074-20109 - 20074 20109 12 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20073;36;0&s=-&p=30&e=30&w=0&f=20074-20109-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20074-20109&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -26.491425 1.0 2.38888888889 -11.0894337209 -27.2236416667 0.732216666667 NA 0.972840631613 0.526576591242 NA 0.974706169624 0.501282760866 0.416666666667 0.0 0.333333333333 NC_045512.2:22647-22721 + 22647 22721 25 NotMaximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22646;75;0&p=30&e=30&w=0&f=22647-22721", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22647-22721&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -26.493788 1.0 2.06666666667 -12.8195748387 -23.787644 -2.706144 NA 0.706439850236 1.0 NA 1.0 0.706439850236 0.333333333333 0.5 0.0 NC_045512.2:4500-4556 + 4500 4556 19 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4499;57;0&p=30&e=30&w=0&f=4500-4556", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4500-4556&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -26.5439631579 1.0 1.84210526316 -14.40958 -14.4088526316 -12.1351105263 NA 0.656181019046 0.912111346248 NA 0.890405339411 0.656181019046 0.368421052632 0.0 0.0 NC_045512.2:22785-22841 - 22785 22841 19 Maximal CUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22784;57;0&s=-&p=30&e=30&w=0&f=22785-22841-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22785-22841&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -26.5463105263 1.0 2.19298245614 -12.1051176 -25.8512473684 -0.695063157879 NA 0.606576591242 0.343053882468 NA 0.521022301807 0.0174377340062 0.368421052632 0.518181818182 0.0 NC_045512.2:22462-22509 + 22462 22509 16 Maximal GUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22461;48;0&p=30&e=30&w=0&f=22462-22509", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22462-22509&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -26.55683125 1.0 3.29166666667 -8.06789810127 -32.76169375 6.2048625 NA 0.645085463129 0.0793000162787 NA 1.0 0.0793000162787 0.354166666667 0.666666666667 0.0 NC_045512.2:23764-23793 + 23764 23793 10 Maximal AUC NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23763;30;0&p=30&e=30&w=0&f=23764-23793", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23764-23793&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -26.58027 1.0 1.66666666667 -15.948162 -25.48557 -1.0947 NA 0.944642682728 0.651082532964 NA 0.623672472733 0.623672472733 0.333333333333 0.0 0.0 NC_045512.2:1755-1853 + 1755 1853 33 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1754;99;0&p=30&e=30&w=0&f=1755-1853", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1755-1853&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -26.6197636364 1.0 2.44444444444 -10.8899033058 -19.6026636364 -7.01710000004 NA 0.706439850236 0.401328341201 NA 0.0 0.0 0.313131313131 0.0 0.0 NC_045512.2:7887-7922 - 7887 7922 12 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7886;36;0&s=-&p=30&e=30&w=0&f=7887-7922-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7887-7922&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -26.6224083333 1.0 1.63888888889 -16.2441813559 -26.5321416667 -0.0902666666333 0.094488035162 1.0 0.893739215367 0.094488035162 0.369545824516 0.369545824516 0.25 0.0 0.0 NC_045512.2:22773-22862 + 22773 22862 30 Maximal GUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22772;90;0&p=30&e=30&w=0&f=22773-22862", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22773-22862&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -26.6225133333 1.0 2.63333333333 -10.1098151899 -23.74872 -2.8737933333 NA 0.844873840143 0.329734657334 NA 0.452648543057 0.0174377340062 0.377777777778 0.642857142857 0.0 NC_045512.2:20942-20989 + 20942 20989 16 Maximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20941;48;0&p=30&e=30&w=0&f=20942-20989", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20942-20989&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -26.63485 1.0 1.47916666667 -18.0066591549 -17.163225 -9.471625 NA 1.0 0.67340061859 NA 0.694077812144 0.661038580498 0.354166666667 0.666666666667 0.0 NC_045512.2:24159-24206 - 24159 24206 16 Maximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24158;48;0&s=-&p=30&e=30&w=0&f=24159-24206-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24159-24206&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -26.65736875 1.0 2.35416666667 -11.3234840708 -25.49154375 -1.165825 NA 1.0 0.343053882468 NA 0.364759889305 0.0174377340062 0.416666666667 0.48 0.0 NC_045512.2:19046-19075 + 19046 19075 10 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19045;30;0&p=30&e=30&w=0&f=19046-19075", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19046-19075&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -26.66716 1.0 1.56666666667 -17.0215914894 -20.11003 -6.55713 NA 0.755943350155 0.706439850236 NA 1.0 0.57197786098 0.4 0.0 0.0 NC_045512.2:2431-2547 + 2431 2547 39 Maximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2430;117;0&p=30&e=30&w=0&f=2431-2547", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:2431-2547&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -26.7018820513 1.0 1.94017094017 -13.7626440529 -25.838674359 -0.863207692326 NA 0.640986488686 0.094488035162 NA 0.085388246785 0.0 0.418803418803 0.0 0.0 NC_045512.2:2622-2681 + 2622 2681 20 NotMaximal ACG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2621;60;0&p=30&e=30&w=0&f=2622-2681", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:2622-2681&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -26.768195 1.0 2.5 -10.707278 -22.30218 -4.466015 NA 0.094488035162 0.567107276575 NA 1.0 0.094488035162 0.433333333333 0.714285714286 0.0 NC_045512.2:22785-22835 - 22785 22835 17 NotMaximal AUU NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22784;51;0&s=-&p=30&e=30&w=0&f=22785-22835-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22785-22835&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -26.7775352941 1.0 2.25490196078 -11.8752547826 -25.0749 -1.7026352941 NA 0.606576591242 0.343053882468 NA 0.705205925444 0.0 0.352941176471 0.6375 0.0 NC_045512.2:4521-4556 + 4521 4556 12 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4520;36;0&p=30&e=30&w=0&f=4521-4556", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4521-4556&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -26.7802333333 1.0 1.83333333333 -14.6074 -17.1158833333 -9.66434999997 NA 0.656181019046 0.912111346248 NA 0.793856421944 0.559632101579 0.333333333333 0.0 0.0 NC_045512.2:22653-22721 + 22653 22721 23 NotMaximal AUU NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22652;69;0&p=30&e=30&w=0&f=22653-22721", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22653-22721&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -26.784673913 1.0 2.11594202899 -12.658510274 -24.1691652174 -2.61550869561 NA 0.706439850236 1.0 NA 0.793628520267 0.587957024255 0.31884057971 0.616071428571 0.0 NC_045512.2:20355-20384 + 20355 20384 10 Maximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20354;30;0&p=30&e=30&w=0&f=20355-20384", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20355-20384&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -26.78616 1.0 2.0 -13.39308 -31.83993 5.05377 NA 0.513078300505 1.0 NA 0.573947582614 0.364759889305 0.433333333333 0.0 0.0 NC_045512.2:22474-22509 + 22474 22509 12 NotMaximal AUC NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22473;36;0&p=30&e=30&w=0&f=22474-22509", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22474-22509&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -26.81385 1.0 3.22222222222 -8.32153965517 -35.05935 8.2455 NA 0.645085463129 0.249370014651 NA 0.6060621846 0.0793000162787 0.333333333333 0.0 0.0 NC_045512.2:19034-19075 + 19034 19075 14 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19033;42;0&p=30&e=30&w=0&f=19034-19075", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19034-19075&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -26.8223 1.0 1.5 -17.8815333333 -17.1186785714 -9.70362142857 NA 0.755943350155 0.638600032557 NA 0.822565521732 0.488653752238 0.404761904762 0.0 0.0 NC_045512.2:12773-12811 - 12773 12811 13 Maximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;12772;39;0&s=-&p=30&e=30&w=0&f=12773-12811-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:12773-12811&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -26.8273230769 1.0 1.82051282051 -14.7361352113 -28.6121692308 1.78484615387 NA 0.0174377340062 0.83009278854 NA 0.502780400456 0.0174377340062 0.410256410256 0.0 0.0 NC_045512.2:23532-23573 - 23532 23573 14 Maximal AUA NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23531;42;0&s=-&p=30&e=30&w=0&f=23532-23573-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23532-23573&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -26.85865 1.0 1.80952380952 -14.8429381579 -23.34945 -3.5092 NA 0.651082532964 0.402171577405 NA 0.0174377340062 0.0 0.404761904762 0.0 0.809523809524 NC_045512.2:22578-22721 + 22578 22721 48 NotMaximal GUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22577;144;0&p=30&e=30&w=0&f=22578-22721", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22578-22721&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -26.8599541667 1.0 2.59722222222 -10.3418005348 -24.5007833333 -2.35917083337 NA 0.706439850236 0.912111346248 NA 0.465625915676 0.281660426502 0.375 0.395061728395 0.0 NC_045512.2:22668-22721 + 22668 22721 18 NotMaximal AUA NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22667;54;0&p=30&e=30&w=0&f=22668-22721", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22668-22721&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -26.9218666667 1.0 2.03703703704 -13.2161890909 -24.4996444444 -2.42222222226 NA 0.706439850236 1.0 NA 0.364759889305 0.0174377340062 0.333333333333 0.701298701299 0.0 NC_045512.2:7749-7802 - 7749 7802 18 Maximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7748;54;0&s=-&p=30&e=30&w=0&f=7749-7802-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7749-7802&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -26.9284055556 1.0 1.96296296296 -13.7182443396 -26.0835555556 -0.844850000044 NA 0.480022790168 0.614064789191 NA 1.0 0.25216343806 0.37037037037 0.0 0.0 NC_045512.2:28117-28188 + 28117 28188 24 NotMaximal AUA NearCognate ORF8 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28116;72;0&p=30&e=30&w=0&f=28117-28188", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28117-28188&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -26.9496125 0.6895 5.4506773315 -4.94426854884 -18.7777041667 -8.17190833333 NA 0.465492430409 0.688100276738 NA 0.0174377340062 0.0174377340062 0.333333333333 0.5 0.0 NC_045512.2:24885-24947 + 24885 24947 21 Maximal AUU NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24884;63;0&p=30&e=30&w=0&f=24885-24947", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24885-24947&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -26.9648047619 1.0 1.92063492063 -14.0395264463 -18.4942190476 -8.47058571428 NA 0.575549405828 0.590656031255 NA 0.866075207553 0.271762982256 0.333333333333 0.0 0.253968253968 NC_045512.2:22779-22862 + 22779 22862 28 NotMaximal AAG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22778;84;0&p=30&e=30&w=0&f=22779-22862", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22779-22862&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -26.9737178571 1.0 2.47619047619 -10.8932322115 -24.739725 -2.2339928571 NA 0.844873840143 0.329734657334 NA 1.0 0.329734657334 0.369047619048 0.705882352941 0.0 NC_045512.2:1365-1436 - 1365 1436 24 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1364;72;0&s=-&p=30&e=30&w=0&f=1365-1436-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1365-1436&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -26.9888041667 1.0 2.06944444444 -13.0415697987 -23.2144125 -3.7743916667 NA 0.494295946606 1.0 NA 0.0174377340062 0.0174377340062 0.375 0.395604395604 0.0555555555556 NC_045512.2:23754-23861 - 23754 23861 36 NotMaximal AAG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23753;108;0&s=-&p=30&e=30&w=0&f=23754-23861-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23754-23861&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -27.0065611111 1.0 2.05555555556 -13.138327027 -27.8591555556 0.852594444456 NA 0.589034673612 0.0174377340062 NA 0.607569591405 0.0174377340062 0.361111111111 0.285714285714 0.0 NC_045512.2:8109-8141 + 8109 8141 11 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8108;33;0&p=30&e=30&w=0&f=8109-8141", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8109-8141&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -27.0822090909 1.0 2.09090909091 -12.9523608696 -22.0183727273 -5.06383636363 NA 0.673788051441 0.542861793912 NA 0.42848445385 0.304538499105 0.454545454545 0.0 0.0 NC_045512.2:22320-22391 + 22320 22391 24 NotMaximal AUU NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22319;72;0&p=30&e=30&w=0&f=22320-22391", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22320-22391&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -27.1069125 0.8585 3.87986089841 -6.98656812957 -23.3116541667 -3.79525833333 NA 0.094488035162 0.094488035162 NA 0.0174377340062 0.0174377340062 0.416666666667 0.0 0.0 NC_045512.2:27326-27355 - 27326 27355 10 NotMaximal AUU NearCognate ORF6 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27325;30;0&s=-&p=30&e=30&w=0&f=27326-27355-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27326-27355&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -27.10835 0.9912 2.0481786868 -13.2353442474 -21.55794 -5.55041 NA 0.912111346248 0.094488035162 NA 0.094488035162 0.094488035162 0.266666666667 0.0 0.0 NC_045512.2:22575-22721 + 22575 22721 49 NotMaximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22574;147;0&p=30&e=30&w=0&f=22575-22721", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22575-22721&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -27.111444898 1.0 2.59183673469 -10.4603212599 -24.0989571429 -3.01248775514 NA 0.706439850236 0.912111346248 NA 0.853716425199 0.648044929188 0.374149659864 0.388888888889 0.0 NC_045512.2:1749-1853 + 1749 1853 35 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1748;105;0&p=30&e=30&w=0&f=1749-1853", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1749-1853&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -27.1192657143 1.0 2.4 -11.2996940476 -19.8485085714 -7.27075714287 NA 0.706439850236 0.401328341201 NA 0.887273319225 0.287104020837 0.295238095238 0.0 0.0 NC_045512.2:4350-4421 - 4350 4421 24 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4349;72;0&s=-&p=30&e=30&w=0&f=4350-4421-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4350-4421&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -27.1215041667 1.0 1.80555555556 -15.0211407692 -24.7605958333 -2.36090833337 NA 0.87713495035 0.424678495849 NA 0.697340061859 0.415578707472 0.388888888889 0.385026737968 0.0 NC_045512.2:22650-22721 + 22650 22721 24 NotMaximal CUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22649;72;0&p=30&e=30&w=0&f=22650-22721", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22650-22721&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -27.12295 1.0 2.15277777778 -12.5990477419 -23.1420416667 -3.98090833333 NA 0.706439850236 1.0 NA 0.519348852352 0.519348852352 0.333333333333 0.533333333333 0.0 NC_045512.2:1752-1853 + 1752 1853 34 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1751;102;0&p=30&e=30&w=0&f=1752-1853", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1752-1853&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -27.1231676471 1.0 2.43137254902 -11.155496371 -19.5378382353 -7.58532941181 NA 0.706439850236 0.401328341201 NA 0.549695588475 0.271762982256 0.303921568627 0.0 0.0 NC_045512.2:23754-23807 - 23754 23807 18 NotMaximal AUU NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23753;54;0&s=-&p=30&e=30&w=0&f=23754-23807-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23754-23807&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -27.1330333333 1.0 1.87037037037 -14.506770297 -27.1460166667 0.0129833333667 NA 0.589034673612 0.0174377340062 NA 0.465710564871 0.0 0.351851851852 0.0 0.0 NC_045512.2:22608-22721 + 22608 22721 38 NotMaximal CUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22607;114;0&p=30&e=30&w=0&f=22608-22721", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22608-22721&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -27.1463578947 1.0 2.35964912281 -11.504404461 -23.0288236842 -4.11753421049 NA 0.706439850236 1.0 NA 0.63672798307 0.63672798307 0.368421052632 0.258503401361 0.0 NC_045512.2:22330-22377 + 22330 22377 16 Maximal AGG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22329;48;0&p=30&e=30&w=0&f=22330-22377", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22330-22377&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -27.1517625 0.9908 4.36145801428 -6.22538665077 -30.37365 3.2218875 NA 0.296392642032 0.290844864073 NA 0.0174377340062 0.0 0.479166666667 0.0 0.0 NC_045512.2:8940-8972 + 8940 8972 11 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8939;33;0&p=30&e=30&w=0&f=8940-8972", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8940-8972&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -27.2188272727 1.0 1.39393939394 -19.52655 -17.3081181818 -9.91070909088 NA 0.582220413479 0.657278202832 NA 0.950838352596 0.263366433339 0.333333333333 0.0 0.0 NC_045512.2:22659-22721 + 22659 22721 21 NotMaximal CUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22658;63;0&p=30&e=30&w=0&f=22659-22721", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22659-22721&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -27.2293619048 1.0 2.07936507937 -13.0950366412 -23.2231428571 -4.00621904766 NA 0.706439850236 1.0 NA 0.618818167019 0.618818167019 0.349206349206 0.5625 0.0 NC_045512.2:19865-19900 - 19865 19900 12 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19864;36;0&s=-&p=30&e=30&w=0&f=19865-19900-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19865-19900&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -27.2312333333 1.0 1.97222222222 -13.8073859155 -25.5058166667 -1.72541666663 NA 0.869451408107 0.494901513918 NA 0.882936675891 0.460654403386 0.444444444444 0.0 0.0 NC_045512.2:1920-1964 + 1920 1964 15 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1919;45;0&p=30&e=30&w=0&f=1920-1964", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1920-1964&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -27.23452 1.0 2.42222222222 -11.2436091743 -17.14458 -10.08994 NA 0.548012371805 0.807654240599 NA 0.740543708286 0.0894774540127 0.422222222222 1.0 0.0 NC_045512.2:21278-21313 + 21278 21313 12 Maximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21277;36;0&p=30&e=30&w=0&f=21278-21313", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21278-21313&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -27.2410083333 1.0 2.13888888889 -12.7360558441 -15.4098666667 -11.8311416666 NA 0.390053719681 0.671772749471 NA 0.706439850236 0.094488035162 0.388888888889 1.4693877551 0.0 NC_045512.2:4194-4250 - 4194 4250 19 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4193;57;0&s=-&p=30&e=30&w=0&f=4194-4250-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4194-4250&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -27.2618052632 1.0 2.0350877193 -13.395887069 -20.8946526316 -6.36715263162 NA 0.706439850236 0.559215367084 NA 1.0 0.559215367084 0.368421052632 0.518181818182 0.0 NC_045512.2:6054-6086 + 6054 6086 11 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;6053;33;0&p=30&e=30&w=0&f=6054-6086", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:6054-6086&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -27.2922727273 0.9813 2.13075627981 -12.8087257027 -19.3657636364 -7.92650909094 NA 0.697821911118 0.928744912909 NA 0.477942373433 0.368347712844 0.242424242424 0.0 0.0 NC_045512.2:2601-2681 + 2601 2681 27 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2600;81;0&p=30&e=30&w=0&f=2601-2681", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:2601-2681&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -27.3032037037 1.0 2.50617283951 -10.8943817734 -22.6435407407 -4.65966296296 NA 0.094488035162 0.094488035162 NA 0.719400944164 0.094488035162 0.407407407407 0.595588235294 0.0 NC_045512.2:22971-23090 + 22971 23090 40 NotMaximal CUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22970;120;0&p=30&e=30&w=0&f=22971-23090", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22971-23090&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -27.3216025 0.866 5.29417974818 -5.16068660294 -23.8167225 -3.50488 NA 0.331828097021 0.69465733355 NA 0.840455803353 0.0 0.4 0.208695652174 0.0 NC_045512.2:22581-22721 + 22581 22721 47 NotMaximal AAG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22580;141;0&p=30&e=30&w=0&f=22581-22721", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22581-22721&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -27.3341191489 1.0 2.53191489362 -10.7958285714 -24.1745404255 -3.15957872337 NA 0.706439850236 0.912111346248 NA 0.913003418525 0.619443268761 0.368794326241 0.417777777778 0.0 NC_045512.2:19559-19606 - 19559 19606 16 Maximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19558;48;0&s=-&p=30&e=30&w=0&f=19559-19606-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19559-19606&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -27.350625 1.0 1.45833333333 -18.7547142857 -22.54149375 -4.80913125 NA 1.0 1.0 NA 1.0 1.0 0.354166666667 0.0 0.0 NC_045512.2:22671-22721 + 22671 22721 17 NotMaximal AUU NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22670;51;0&p=30&e=30&w=0&f=22671-22721", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22671-22721&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -27.3614470588 1.0 2.11764705882 -12.9206833333 -25.4099882353 -1.95145882351 NA 0.706439850236 1.0 NA 0.583871072766 0.290310923002 0.352941176471 0.662337662338 0.0 NC_045512.2:21417-21461 + 21417 21461 15 Maximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21416;45;0&p=30&e=30&w=0&f=21417-21461", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21417-21461&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -27.38308 1.0 1.95555555556 -14.0027113636 -28.0172733333 0.634193333333 NA 0.886397525639 0.670923001791 NA 0.815907537034 0.541341364154 0.333333333333 0.0 0.0 NC_045512.2:23946-24038 + 23946 24038 31 NotMaximal AAG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23945;93;0&p=30&e=30&w=0&f=23946-24038", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23946-24038&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -27.3974064516 1.0 1.98924731183 -13.7727502703 -19.2424612903 -8.15494516128 NA 0.652410874166 0.866342178089 NA 0.907813771773 0.540384177112 0.301075268817 0.0 0.0 NC_045512.2:23661-23753 + 23661 23753 31 NotMaximal GUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23660;93;0&p=30&e=30&w=0&f=23661-23753", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23661-23753&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -27.4461774194 1.0 1.67741935484 -16.3621442308 -19.2082870968 -8.23789032263 NA 0.54 0.0 NA 1.0 0.0 0.344086021505 0.0 0.387096774194 NC_045512.2:4350-4412 - 4350 4412 21 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4349;63;0&s=-&p=30&e=30&w=0&f=4350-4412-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4350-4412&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -27.4515666667 1.0 1.92063492063 -14.2929644628 -25.2073285714 -2.24423809527 NA 0.87713495035 0.630349991861 NA 0.368009116067 0.368009116067 0.396825396825 0.4375 0.0 NC_045512.2:23640-23753 + 23640 23753 38 Maximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23639;114;0&p=30&e=30&w=0&f=23640-23753", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23640-23753&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -27.4686710526 1.0 1.63157894737 -16.8356370968 -18.2902236842 -9.17844736839 NA 0.54 0.0 NA 0.301009278854 0.0 0.359649122807 0.0 0.315789473684 NC_045512.2:22602-22721 + 22602 22721 40 NotMaximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22601;120;0&p=30&e=30&w=0&f=22602-22721", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22602-22721&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -27.47615 1.0 2.4 -11.4483958333 -24.6515675 -2.8245825 NA 0.706439850236 1.0 NA 0.0 0.0 0.366666666667 0.247933884298 0.0 NC_045512.2:21731-21802 - 21731 21802 24 NotMaximal AUC NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21730;72;0&s=-&p=30&e=30&w=0&f=21731-21802-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21731-21802&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -27.48665 0.9279 6.37586527341 -4.31104623786 -39.0175375 11.5308875 NA 0.419817678659 0.374728959792 NA 0.601009278854 0.0 0.402777777778 0.0 0.0 NC_045512.2:2577-2609 - 2577 2609 11 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2576;33;0&s=-&p=30&e=30&w=0&f=2577-2609-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:2577-2609&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -27.4898727273 1.0 2.45454545455 -11.1995777778 -19.1938727273 -8.29600000003 NA 0.477942373433 0.390053719681 NA 0.628139345597 0.094488035162 0.484848484848 0.0 0.0 NC_045512.2:28096-28140 - 28096 28140 15 NotMaximal AGG NearCognate ORF8 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28095;45;0&s=-&p=30&e=30&w=0&f=28096-28140-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28096-28140&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -27.5662933333 0.6987 6.63784107622 -4.15290047122 -26.8262733333 -0.740019999967 NA 0.094488035162 0.583838515383 NA 0.557095881491 0.094488035162 0.355555555556 1.63636363636 0.0 NC_045512.2:7887-7937 - 7887 7937 17 Maximal ACG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7886;51;0&s=-&p=30&e=30&w=0&f=7887-7937-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7887-7937&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -27.5787117647 1.0 1.98039215686 -13.9258841584 -20.4144294118 -7.16428235294 NA 1.0 0.293524336643 NA 1.0 0.293524336643 0.313725490196 0.85 0.0 NC_045512.2:23754-23801 - 23754 23801 16 NotMaximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23753;48;0&s=-&p=30&e=30&w=0&f=23754-23801-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23754-23801&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -27.58916875 1.0 1.75 -15.7652392857 -24.78566875 -2.8035 NA 0.589034673612 0.0174377340062 NA 0.420358131206 0.0174377340062 0.354166666667 0.0 0.0 NC_045512.2:19703-19765 - 19703 19765 21 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19702;63;0&s=-&p=30&e=30&w=0&f=19703-19765-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19703-19765&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -27.5969809524 1.0 1.61904761905 -17.0451941177 -31.2660666667 3.66908571427 0.0174377340062 1.0 0.753140159531 0.0174377340062 0.981982744587 0.753140159531 0.269841269841 0.0 0.0 NC_045512.2:3546-3578 + 3546 3578 11 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3545;33;0&p=30&e=30&w=0&f=3546-3578", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3546-3578&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -27.6384727273 1.0 2.48484848485 -11.1228 -20.8731545455 -6.76531818185 0.927133322481 0.094488035162 0.424724076184 0.0174377340062 1.0 0.0174377340062 0.424242424242 0.0 0.0 NC_045512.2:23697-23753 + 23697 23753 19 NotMaximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23696;57;0&p=30&e=30&w=0&f=23697-23753", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23697-23753&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -27.6538894737 1.0 1.49122807018 -18.5443729412 -19.3225578947 -8.33133157896 NA 0.54 0.0 NA 0.865111509035 0.0 0.350877192982 0.0 0.40350877193 NC_045512.2:22333-22377 + 22333 22377 15 NotMaximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22332;45;0&p=30&e=30&w=0&f=22333-22377", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22333-22377&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -27.6574466667 0.9902 4.22999965968 -6.53840399335 -30.80214 3.1446933333 NA 0.296392642032 0.333573172717 NA 0.359453035976 0.0 0.466666666667 0.0 0.0 NC_045512.2:4194-4229 - 4194 4229 12 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4193;36;0&s=-&p=30&e=30&w=0&f=4194-4229-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4194-4229&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -27.7312416667 1.0 2.19444444444 -12.637021519 -21.578875 -6.1523666667 NA 0.706439850236 0.664151066254 NA 0.983005046394 0.664151066254 0.416666666667 0.666666666667 0.0 NC_045512.2:2646-2681 + 2646 2681 12 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2645;36;0&p=30&e=30&w=0&f=2646-2681", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:2646-2681&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -27.766825 1.0 2.77777777778 -9.996057 -21.8427 -5.924125 NA 0.094488035162 1.0 NA 0.966882630636 0.094488035162 0.416666666667 0.0 0.0 NC_045512.2:23949-24038 + 23949 24038 30 NotMaximal AUU NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23948;90;0&p=30&e=30&w=0&f=23949-24038", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23949-24038&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -27.8033666667 1.0 1.93333333333 -14.3810517242 -20.1099633333 -7.69340333337 NA 0.652410874166 0.866342178089 NA 0.882659938141 0.532638775842 0.3 0.0 0.0 NC_045512.2:23106-23198 + 23106 23198 31 Maximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23105;93;0&p=30&e=30&w=0&f=23106-23198", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23106-23198&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -27.849583871 1.0 2.54838709677 -10.9283177215 -23.7339709677 -4.11561290326 NA 0.364759889305 0.258355852189 NA 0.993661077649 0.0 0.333333333333 0.0 0.0 NC_045512.2:22838-22882 - 22838 22882 15 NotMaximal AUU NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22837;45;0&s=-&p=30&e=30&w=0&f=22838-22882-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22838-22882&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -27.88672 0.9712 3.42374281907 -8.14509776981 -35.6536266667 7.76690666667 NA 0.434598730262 0.718414455478 NA 0.30475012209 0.254650822074 0.377777777778 0.625 0.0 NC_045512.2:23201-23245 - 23201 23245 15 NotMaximal AGG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23200;45;0&s=-&p=30&e=30&w=0&f=23201-23245-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23201-23245&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -27.9026866667 1.0 3.42222222222 -8.15338246754 -29.9023933333 1.99970666663 NA 0.364759889305 0.563363177601 NA 0.343053882468 0.0 0.422222222222 0.0 0.0 NC_045512.2:24690-24740 + 24690 24740 17 NotMaximal GUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24689;51;0&p=30&e=30&w=0&f=24690-24740", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24690-24740&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -27.9081529412 1.0 2.1568627451 -12.9392345455 -19.8000529412 -8.10810000002 NA 0.343053882468 0.542353898747 NA 0.980713006674 0.0174377340062 0.509803921569 0.0 0.0980392156863 NC_045512.2:22554-22721 + 22554 22721 56 NotMaximal AUA NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22553;168;0&p=30&e=30&w=0&f=22554-22721", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22554-22721&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -27.951625 1.0 2.57142857143 -10.8700763889 -23.7786428571 -4.17298214286 NA 0.706439850236 0.706439850236 NA 0.527107276575 0.527107276575 0.369047619048 0.35 0.0 NC_045512.2:20074-20106 - 20074 20106 11 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20073;33;0&s=-&p=30&e=30&w=0&f=20074-20106-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20074-20106&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -27.9641727273 1.0 2.57575757576 -10.8566788235 -27.5484363636 -0.415736363664 NA 0.972840631613 0.526576591242 NA 0.452648543057 0.343053882468 0.454545454545 0.0 0.272727272727 NC_045512.2:1935-1964 + 1935 1964 10 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1934;30;0&p=30&e=30&w=0&f=1935-1964", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1935-1964&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -27.98312 1.0 2.5 -11.193248 -21.94366 -6.03946 NA 0.548012371805 0.912111346248 NA 0.700953931304 0.248363991535 0.466666666667 1.25 0.0 NC_045512.2:21420-21461 + 21420 21461 14 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21419;42;0&p=30&e=30&w=0&f=21420-21461", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21420-21461&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -27.9887714286 1.0 1.88095238095 -14.8801063291 -27.7410571429 -0.247714285743 NA 0.886397525639 0.670923001791 NA 0.706439850236 0.643164577568 0.357142857143 0.0 0.0 NC_045512.2:27269-27298 + 27269 27298 10 Maximal AAG NearCognate ORF6 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;27268;30;0&p=30&e=30&w=0&f=27269-27298", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:27269-27298&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -28.00744 0.9959 2.81339817037 -9.95502175803 -12.6356 -15.37184 NA 0.978368875142 0.368347712844 NA 0.094488035162 0.094488035162 0.3 0.0 0.0 NC_045512.2:1881-1964 + 1881 1964 28 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1880;84;0&p=30&e=30&w=0&f=1881-1964", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1881-1964&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -28.0124892857 1.0 2.22619047619 -12.5831502674 -17.7792214286 -10.2332678571 NA 0.548012371805 0.807654240599 NA 0.987712843887 0.385043138532 0.464285714286 1.11111111111 0.0 NC_045512.2:1677-1736 + 1677 1736 20 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1676;60;0&p=30&e=30&w=0&f=1677-1736", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1677-1736&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -28.01611 1.0 2.1 -13.3410047619 -18.89909 -9.11702 NA 0.706439850236 0.52878072603 NA 1.0 0.52878072603 0.4 0.416666666667 0.0 NC_045512.2:22980-23090 + 22980 23090 37 NotMaximal AUC NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22979;111;0&p=30&e=30&w=0&f=22980-23090", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22980-23090&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -28.0860756757 0.8664 5.233014153 -5.36709339102 -24.6577216216 -3.42835405408 NA 0.331828097021 0.571378805144 NA 0.460100927885 0.0 0.405405405405 0.219367588933 0.0 NC_045512.2:26015-26047 - 26015 26047 11 NotMaximal AUU NearCognate ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26014;33;0&s=-&p=30&e=30&w=0&f=26015-26047-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26015-26047&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -28.1017272727 1.0 2.09090909091 -13.4399565217 -21.2281636364 -6.87356363634 NA 0.982445059417 0.432296923327 NA 0.368989093277 0.363796190786 0.393939393939 0.0 0.0 NC_045512.2:28096-28134 - 28096 28134 13 NotMaximal CUG NearCognate ORF8 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28095;39;0&s=-&p=30&e=30&w=0&f=28096-28134-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28096-28134&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -28.1182 0.7054 6.65783878718 -4.22332244724 -28.7850307692 0.666830769231 NA 0.094488035162 0.583838515383 NA 0.416558684682 0.094488035162 0.358974358974 1.73333333333 0.0 NC_045512.2:3741-3830 - 3741 3830 30 Maximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3740;90;0&s=-&p=30&e=30&w=0&f=3741-3830-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3741-3830&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -28.1327366667 0.9903 2.5454714243 -11.0520732616 -27.05459 -1.0781466667 NA 0.333954094091 0.094488035162 NA 0.094488035162 0.0 0.311111111111 0.461538461538 0.0 NC_045512.2:22838-22873 - 22838 22873 12 NotMaximal AUU NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22837;36;0&s=-&p=30&e=30&w=0&f=22838-22873-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22838-22873&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -28.1397 1.0 2.69444444444 -10.4436 -35.210925 7.071225 NA 0.434598730262 0.880153019697 NA 0.759407455641 0.28382549243 0.416666666667 0.666666666667 0.0 NC_045512.2:22590-22721 + 22590 22721 44 NotMaximal ACG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22589;132;0&p=30&e=30&w=0&f=22590-22721", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22590-22721&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -28.1490931818 1.0 2.57575757576 -10.9284714706 -25.4255 -2.7235931818 NA 0.706439850236 0.912111346248 NA 1.0 0.706439850236 0.386363636364 0.407407407407 0.0 NC_045512.2:23952-24038 + 23952 24038 29 NotMaximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23951;87;0&p=30&e=30&w=0&f=23952-24038", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23952-24038&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -28.199537931 1.0 1.97701149425 -14.2637197674 -20.5196034483 -7.67993448272 NA 0.652410874166 0.866342178089 NA 0.995940094416 0.540384177112 0.310344827586 0.0 0.0 NC_045512.2:22953-23090 + 22953 23090 46 NotMaximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22952;138;0&p=30&e=30&w=0&f=22953-23090", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22953-23090&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -28.2112434783 0.8835 5.08914181001 -5.54341862174 -24.2274217391 -3.98382173917 NA 0.331828097021 0.681745075696 NA 0.966641706007 0.220058603288 0.384057971014 0.196581196581 0.0 NC_045512.2:4503-4556 + 4503 4556 18 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4502;54;0&p=30&e=30&w=0&f=4503-4556", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4503-4556&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -28.25615 1.0 1.88888888889 -14.9591382353 -14.8497277778 -13.4064222222 NA 0.656181019046 0.912111346248 NA 1.0 0.656181019046 0.37037037037 0.0 0.0 NC_045512.2:22983-23090 + 22983 23090 36 NotMaximal AGG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22982;108;0&p=30&e=30&w=0&f=22983-23090", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22983-23090&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -28.29435 0.8691 5.14901545906 -5.49509905825 -24.2789472222 -4.01540277778 NA 0.331828097021 0.669363503174 NA 0.642562265994 0.0 0.407407407407 0.223140495868 0.0 NC_045512.2:1884-1964 + 1884 1964 27 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1883;81;0&p=30&e=30&w=0&f=1884-1964", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1884-1964&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -28.3222740741 1.0 2.27160493827 -12.4679576087 -18.301537037 -10.0207370371 NA 0.548012371805 0.807654240599 NA 0.94974116881 0.385043138532 0.456790123457 1.20535714286 0.0 NC_045512.2:4194-4232 - 4194 4232 13 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4193;39;0&s=-&p=30&e=30&w=0&f=4194-4232-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4194-4232&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -28.3787615385 1.0 2.23076923077 -12.7215137931 -20.1727461538 -8.20601538465 NA 0.706439850236 0.624811981117 NA 0.368347712844 0.0174377340062 0.435897435897 0.557142857143 0.0 NC_045512.2:23688-23753 + 23688 23753 22 NotMaximal AUA NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23687;66;0&p=30&e=30&w=0&f=23688-23753", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23688-23753&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -28.4027454545 1.0 1.59090909091 -17.8531542857 -18.9420727273 -9.46067272723 NA 0.54 0.0 NA 0.87116392642 0.0 0.333333333333 0.0 0.484848484848 NC_045512.2:7887-7919 - 7887 7919 11 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7886;33;0&s=-&p=30&e=30&w=0&f=7887-7919-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7887-7919&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -28.4039272727 1.0 1.63636363636 -17.3579555555 -28.4459909091 0.0420636363909 NA 1.0 0.893739215367 NA 0.50251342992 0.48414129904 0.242424242424 0.0 0.0 NC_045512.2:22962-23090 + 22962 23090 43 NotMaximal AUA NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22961;129;0&p=30&e=30&w=0&f=22962-23090", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22962-23090&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -28.4070860465 0.8753 5.26590364172 -5.39453206501 -25.7604395349 -2.64664651162 NA 0.331828097021 0.681745075696 NA 0.711958326551 0.220058603288 0.37984496124 0.215719063545 0.0 NC_045512.2:23658-23753 + 23658 23753 32 NotMaximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23657;96;0&p=30&e=30&w=0&f=23658-23753", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23658-23753&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -28.446528125 1.0 1.67708333333 -16.9619049689 -18.530965625 -9.9155625 NA 0.54 0.0 NA 0.595259645125 0.0 0.34375 0.0 0.375 NC_045512.2:14171-14233 - 14171 14233 21 Maximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14170;63;0&s=-&p=30&e=30&w=0&f=14171-14233-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14171-14233&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -28.4627238095 1.0 1.88888888889 -15.0685008403 -22.491352381 -5.97137142855 NA 0.667009604428 0.220058603288 NA 0.706439850236 0.0 0.412698412698 0.0 0.0 NC_045512.2:22047-22085 - 22047 22085 13 Maximal AAG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22046;39;0&s=-&p=30&e=30&w=0&f=22047-22085-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22047-22085&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -28.4795230769 0.9767 6.11522414996 -4.65715113274 -34.8932153846 6.41369230772 NA 0.546736122416 0.553592707146 NA 0.541585544522 0.0174377340062 0.384615384615 0.696428571429 0.0 NC_045512.2:2577-2681 + 2577 2681 35 Maximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2576;105;0&p=30&e=30&w=0&f=2577-2681", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:2577-2681&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -28.4875257143 1.0 2.55238095238 -11.1611574627 -22.2294971429 -6.25802857144 NA 0.094488035162 0.0174377340062 NA 0.82299527918 0.0174377340062 0.428571428571 0.416666666667 0.0 NC_045512.2:870-908 - 870 908 13 Maximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;869;39;0&s=-&p=30&e=30&w=0&f=870-908-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:870-908&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -28.4994307692 1.0 2.17948717949 -13.0762094118 -30.6144230769 2.11499230772 NA 0.912111346248 0.827022627381 NA 0.390053719681 0.094488035162 0.461538461538 0.4875 0.0 NC_045512.2:2589-2681 + 2589 2681 31 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2588;93;0&p=30&e=30&w=0&f=2589-2681", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:2589-2681&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -28.508 1.0 2.5376344086 -11.2340847458 -22.4966645161 -6.01133548387 NA 0.094488035162 0.0174377340062 NA 1.0 0.0174377340062 0.41935483871 0.489473684211 0.0 NC_045512.2:2580-2681 + 2580 2681 34 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2579;102;0&p=30&e=30&w=0&f=2580-2681", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:2580-2681&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -28.5549529412 1.0 2.54901960784 -11.2023276923 -22.5045676471 -6.05038529414 NA 0.094488035162 0.0174377340062 NA 0.368347712844 0.0174377340062 0.421568627451 0.441558441558 0.0 NC_045512.2:19703-19762 - 19703 19762 20 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19702;60;0&s=-&p=30&e=30&w=0&f=19703-19762-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19703-19762&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -28.59317 1.0 1.61666666667 -17.6864969072 -32.31721 3.72404 NA 1.0 0.753140159531 NA 0.681933908514 0.569174670357 0.266666666667 0.0 0.0 NC_045512.2:23712-23753 + 23712 23753 14 NotMaximal AUU NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23711;42;0&p=30&e=30&w=0&f=23712-23753", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23712-23753&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -28.6039928571 1.0 1.64285714286 -17.4111260869 -21.2714857143 -7.33250714281 NA 0.54 0.359247924467 NA 0.969034673612 0.333954094091 0.309523809524 0.0 0.190476190476 NC_045512.2:23676-23753 + 23676 23753 26 NotMaximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23675;78;0&p=30&e=30&w=0&f=23676-23753", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23676-23753&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -28.6056076923 1.0 1.57692307692 -18.1401414634 -18.1186846154 -10.4869230769 NA 0.54 0.0 NA 0.896239622334 0.0 0.333333333333 0.0 0.461538461538 NC_045512.2:23955-24038 + 23955 24038 28 NotMaximal GUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23954;84;0&p=30&e=30&w=0&f=23955-24038", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23955-24038&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -28.6463464286 1.0 2.03571428571 -14.0718894737 -20.9850392857 -7.66130714289 NA 0.652410874166 0.866342178089 NA 0.852625752889 0.400113950838 0.309523809524 0.0 0.0 NC_045512.2:2331-2372 + 2331 2372 14 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2330;42;0&p=30&e=30&w=0&f=2331-2372", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:2331-2372&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -28.7589428571 1.0 2.54761904762 -11.2885570093 -11.1448214286 -17.6141214285 NA 0.477942373433 0.640540452548 NA 0.094488035162 0.094488035162 0.404761904762 0.0 0.0 NC_045512.2:23964-24038 + 23964 24038 25 NotMaximal AUU NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23963;75;0&p=30&e=30&w=0&f=23964-24038", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23964-24038&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -28.770976 1.0 2.08 -13.8322 -21.145928 -7.625048 NA 0.652410874166 0.866342178089 NA 0.972840631613 0.513224808725 0.306666666667 0.0 0.0 NC_045512.2:24354-24389 - 24354 24389 12 NotMaximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24353;36;0&s=-&p=30&e=30&w=0&f=24354-24389-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24354-24389&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -28.8034333333 1.0 2.08333333333 -13.825648 -26.1410583333 -2.66237499997 NA 0.668520266971 0.0 NA 0.55219925118 0.0 0.388888888889 0.0 0.277777777778 NC_045512.2:23754-23912 - 23754 23912 53 Maximal GUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23753;159;0&s=-&p=30&e=30&w=0&f=23754-23912-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23754-23912&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -28.8459339623 1.0 2.21383647799 -13.0298394887 -29.6075358491 0.761601886757 NA 0.589034673612 0.0174377340062 NA 0.44354875468 0.0 0.364779874214 0.189285714286 0.0 NC_045512.2:24159-24191 - 24159 24191 11 NotMaximal GUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24158;33;0&s=-&p=30&e=30&w=0&f=24159-24191-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24159-24191&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -28.8650727273 1.0 2.24242424242 -12.8722621622 -23.2930090909 -5.57206363639 NA 1.0 1.0 NA 0.659651636008 0.659651636008 0.393939393939 0.0 0.0 NC_045512.2:19865-19903 - 19865 19903 13 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19864;39;0&s=-&p=30&e=30&w=0&f=19865-19903-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19865-19903&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -28.8908384615 1.0 2.15384615385 -13.4136035714 -23.6209615385 -5.26987692304 NA 0.869451408107 0.494901513918 NA 0.891004395247 0.440644636171 0.461538461538 0.0 0.0 NC_045512.2:28174-28203 - 28174 28203 10 Maximal ACG NearCognate ORF8 =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;28173;30;0&s=-&p=30&e=30&w=0&f=28174-28203-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:28174-28203&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -28.9254 0.7064 5.47345490968 -5.28466945966 -28.6797 -0.2457 NA 0.094488035162 0.800791144392 NA 0.519189321179 0.094488035162 0.433333333333 2.0 0.0 NC_045512.2:23410-23481 + 23410 23481 24 Maximal CUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23409;72;0&p=30&e=30&w=0&f=23410-23481", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23410-23481&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -28.9983333333 1.0 3.34722222222 -8.66340248962 -38.8016 9.8032666667 NA 0.486218460036 0.286013348527 NA 1.0 0.0174377340062 0.444444444444 0.291497975709 0.0 NC_045512.2:23532-23567 - 23532 23567 12 NotMaximal CUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23531;36;0&s=-&p=30&e=30&w=0&f=23532-23567-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23532-23567&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -29.0117583333 1.0 1.94444444444 -14.9203328571 -24.1141083333 -4.89764999997 NA 0.651082532964 0.402171577405 NA 0.304945466385 0.240146508221 0.444444444444 0.0 0.777777777778 NC_045512.2:22947-23000 - 22947 23000 18 Maximal AAG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22946;54;0&s=-&p=30&e=30&w=0&f=22947-23000-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22947-23000&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -29.0127388889 0.9016 5.10098695802 -5.68767164623 -35.4102888889 6.39754999999 NA 0.830421618102 0.714211297412 NA 0.627719355364 0.364759889305 0.407407407407 0.45 0.0 NC_045512.2:23271-23354 + 23271 23354 28 NotMaximal CUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23270;84;0&p=30&e=30&w=0&f=23271-23354", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23271-23354&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -29.0200357143 1.0 2.66666666667 -10.8825133929 -23.9633321429 -5.05670357144 NA 0.76950024418 0.368347712844 NA 0.593075044766 0.085388246785 0.440476190476 0.245614035088 0.321428571429 NC_045512.2:2586-2681 + 2586 2681 32 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2585;96;0&p=30&e=30&w=0&f=2586-2681", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:2586-2681&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -29.056715625 1.0 2.58333333333 -11.2477608871 -22.446771875 -6.60994375 NA 0.094488035162 0.0174377340062 NA 0.094488035162 0.0174377340062 0.416666666667 0.48 0.0 NC_045512.2:23754-23828 - 23754 23828 25 NotMaximal AUU NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23753;75;0&s=-&p=30&e=30&w=0&f=23754-23828-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23754-23828&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -29.095616 1.0 2.06666666667 -14.078523871 -28.612828 -0.482788 NA 0.589034673612 0.0174377340062 NA 0.340065114765 0.0174377340062 0.36 0.0 0.0 NC_045512.2:2583-2681 + 2583 2681 33 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2582;99;0&p=30&e=30&w=0&f=2583-2681", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:2583-2681&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -29.1117848485 1.0 2.55555555556 -11.3915679842 -22.8594606061 -6.25232424244 NA 0.094488035162 0.0174377340062 NA 0.390053719681 0.0174377340062 0.424242424242 0.448979591837 0.0 NC_045512.2:20285-20314 - 20285 20314 10 Maximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20284;30;0&s=-&p=30&e=30&w=0&f=20285-20314-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20285-20314&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -29.18634 1.0 1.96666666667 -14.8405118644 -19.05803 -10.12831 NA 1.0 1.0 NA 1.0 1.0 0.366666666667 1.07142857143 0.0 NC_045512.2:22941-23090 + 22941 23090 50 NotMaximal AUC NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22940;150;0&p=30&e=30&w=0&f=22941-23090", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22941-23090&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -29.215622 0.8923 4.99092615013 -5.85374760539 -25.820458 -3.395164 NA 0.331828097021 0.537616799609 NA 0.0174377340062 0.0 0.38 0.185185185185 0.0 NC_045512.2:23670-23753 + 23670 23753 28 NotMaximal AUU NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23669;84;0&p=30&e=30&w=0&f=23670-23753", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23670-23753&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -29.2585678571 1.0 1.69047619048 -17.3078852112 -19.2796428571 -9.97892499996 NA 0.54 0.0 NA 0.754403385968 0.0 0.333333333333 0.0 0.428571428571 NC_045512.2:2313-2372 + 2313 2372 20 Maximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2312;60;0&p=30&e=30&w=0&f=2313-2372", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:2313-2372&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -29.35823 1.0 2.48333333333 -11.8221060403 -15.28598 -14.07225 NA 0.477942373433 0.640540452548 NA 0.681644147811 0.085388246785 0.35 0.0 0.0 NC_045512.2:24462-24509 - 24462 24509 16 Maximal GUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24461;48;0&s=-&p=30&e=30&w=0&f=24462-24509-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24462-24509&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -29.37509375 1.0 1.75 -16.7857678571 -26.584825 -2.79026875 NA 0.94439850236 0.43181181833 NA 0.590024418037 0.355819632102 0.333333333333 0.0 0.166666666667 NC_045512.2:22539-22721 + 22539 22721 61 NotMaximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22538;183;0&p=30&e=30&w=0&f=22539-22721", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22539-22721&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -29.383004918 1.0 2.5737704918 -11.4163267516 -23.642057377 -5.74094754095 NA 0.706439850236 0.598629334202 NA 0.783675728471 0.501038580498 0.360655737705 0.336397058824 0.0 NC_045512.2:19091-19126 + 19091 19126 12 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19090;36;0&p=30&e=30&w=0&f=19091-19126", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19091-19126&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -29.3991083333 1.0 1.83333333333 -16.0358772727 -12.1630583333 -17.23605 0.681318573987 1.0 1.0 0.681318573987 1.0 1.0 0.361111111111 0.0 0.0 NC_045512.2:4350-4406 - 4350 4406 19 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4349;57;0&s=-&p=30&e=30&w=0&f=4350-4406-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4350-4406&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -29.4160526316 1.0 2.01754385965 -14.5801304348 -27.0616315789 -2.35442105265 NA 0.87713495035 0.630349991861 NA 0.49508383526 0.094488035162 0.385964912281 0.508928571429 0.0 NC_045512.2:21731-21784 - 21731 21784 18 NotMaximal AUU NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21730;54;0&s=-&p=30&e=30&w=0&f=21731-21784-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21731-21784&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -29.4410833333 0.9454 6.67309075319 -4.41191112518 -42.8105166667 13.3694333334 NA 0.419817678659 0.374728959792 NA 0.548757935862 0.0 0.407407407407 0.0 0.0 NC_045512.2:1872-1964 + 1872 1964 31 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1871;93;0&p=30&e=30&w=0&f=1872-1964", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1872-1964&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -29.4709516129 1.0 2.32258064516 -12.6888819444 -18.6939 -10.7770516129 NA 0.548012371805 0.807654240599 NA 0.0894774540127 0.0894774540127 0.462365591398 1.01086956522 0.0 NC_045512.2:8148-8201 + 8148 8201 18 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8147;54;0&p=30&e=30&w=0&f=8148-8201", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8148-8201&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -29.4838888889 1.0 2.05555555556 -14.3435135135 -15.7665555556 -13.7173333333 0.364759889305 0.477942373433 0.835295458245 0.0174377340062 0.970529057464 0.368347712844 0.388888888889 0.5 0.0 NC_045512.2:24684-24740 + 24684 24740 19 NotMaximal AUU NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24683;57;0&p=30&e=30&w=0&f=24684-24740", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24684-24740&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -29.4881315789 1.0 2.10526315789 -14.0068625 -20.6043210526 -8.88381052627 NA 0.343053882468 0.542353898747 NA 0.392290411851 0.0174377340062 0.456140350877 0.0 0.19298245614 NC_045512.2:8094-8156 - 8094 8156 21 Maximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8093;63;0&s=-&p=30&e=30&w=0&f=8094-8156-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8094-8156&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -29.5152857143 1.0 2.19047619048 -13.4743695652 -28.1391095238 -1.37617619049 NA 0.882562265994 0.292114601986 NA 0.485336154973 0.253840143252 0.380952380952 0.0 0.0 NC_045512.2:1365-1394 - 1365 1394 10 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1364;30;0&s=-&p=30&e=30&w=0&f=1365-1394-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1365-1394&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -29.5176 1.0 2.53333333333 -11.6516842105 -17.09712 -12.42048 NA 0.494295946606 1.0 NA 0.733771772749 0.469790004884 0.333333333333 0.0 0.0 NC_045512.2:21731-21808 - 21731 21808 26 Maximal AGG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21730;78;0&s=-&p=30&e=30&w=0&f=21731-21808-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21731-21808&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -29.5492192308 0.9277 6.19379837639 -4.7707751262 -38.5329846154 8.98376538458 NA 0.419817678659 0.374728959792 NA 0.53164577568 0.0 0.410256410256 0.0 0.0 NC_045512.2:19094-19126 + 19094 19126 11 NotMaximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19093;33;0&p=30&e=30&w=0&f=19094-19126", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19094-19126&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -29.5809 1.0 1.81818181818 -16.269495 -12.9847272727 -16.5961727273 0.857069835585 1.0 1.0 0.857069835585 1.0 1.0 0.363636363636 0.0 0.0 NC_045512.2:24297-24341 - 24297 24341 15 Maximal AUU NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24296;45;0&s=-&p=30&e=30&w=0&f=24297-24341-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24297-24341&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -29.59448 1.0 1.6 -18.49655 -25.6272733333 -3.96720666667 NA 0.848933745727 0.851316946118 NA 0.56062835748 0.456145205925 0.355555555556 0.0 0.444444444444 NC_045512.2:4857-4901 + 4857 4901 15 Maximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4856;45;0&p=30&e=30&w=0&f=4857-4901", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4857-4901&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -29.6138266667 1.0 2.62222222222 -11.2934084746 -21.3299333333 -8.28389333337 NA 0.094488035162 0.80218134462 NA 0.839475826144 0.094488035162 0.355555555556 0.0 0.0 NC_045512.2:24681-24740 + 24681 24740 20 NotMaximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24680;60;0&p=30&e=30&w=0&f=24681-24740", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24681-24740&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -29.76052 1.0 2.03333333333 -14.6363213115 -19.58205 -10.17847 NA 0.343053882468 0.542353898747 NA 0.896457756796 0.0174377340062 0.45 0.0 0.233333333333 NC_045512.2:14171-14227 - 14171 14227 19 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14170;57;0&s=-&p=30&e=30&w=0&f=14171-14227-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14171-14227&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -29.7990789474 1.0 1.94736842105 -15.3022297297 -23.4561842105 -6.34289473687 NA 0.667009604428 0.220058603288 NA 0.987680286505 0.0 0.40350877193 0.0 0.0 NC_045512.2:23130-23198 + 23130 23198 23 NotMaximal CUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23129;69;0&p=30&e=30&w=0&f=23130-23198", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23130-23198&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -29.8303956522 1.0 2.55072463768 -11.6948710227 -24.4756782609 -5.35471739133 NA 0.364759889305 0.536662868305 NA 0.0174377340062 0.0174377340062 0.304347826087 0.0 0.0 NC_045512.2:4506-4556 + 4506 4556 17 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4505;51;0&p=30&e=30&w=0&f=4506-4556", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4506-4556&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -29.8565235294 1.0 1.94117647059 -15.3806333333 -15.2187705882 -14.6377529412 NA 0.656181019046 0.912111346248 NA 0.094488035162 0.094488035162 0.352941176471 0.0 0.0 NC_045512.2:22947-22997 - 22947 22997 17 NotMaximal GUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22946;51;0&s=-&p=30&e=30&w=0&f=22947-22997-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22947-22997&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -29.8896058824 0.9068 5.11161882311 -5.84738551851 -37.8937705882 8.00416470584 NA 0.830421618102 0.804300830213 NA 0.384626404037 0.33012860166 0.411764705882 0.463636363636 0.0 NC_045512.2:4872-4901 + 4872 4901 10 NotMaximal AUU NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4871;30;0&p=30&e=30&w=0&f=4872-4901", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4872-4901&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -29.91441 1.0 2.93333333333 -10.1980943182 -18.88322 -11.03119 NA 0.094488035162 0.80218134462 NA 0.546573335504 0.094488035162 0.4 0.0 0.0 NC_045512.2:24513-24548 + 24513 24548 12 NotMaximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24512;36;0&p=30&e=30&w=0&f=24513-24548", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24513-24548&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -29.9458916667 1.0 1.88888888889 -15.853707353 -17.0070666667 -12.938825 NA 0.706439850236 0.614797330295 NA 0.876643333876 0.583083184112 0.388888888889 0.0 0.0 NC_045512.2:1890-1964 + 1890 1964 25 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1889;75;0&p=30&e=30&w=0&f=1890-1964", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1890-1964&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -29.974852 1.0 2.33333333333 -12.8463651429 -19.953688 -10.021164 NA 0.548012371805 0.807654240599 NA 0.890405339411 0.0894774540127 0.44 1.11111111111 0.0 NC_045512.2:24495-24548 + 24495 24548 18 Maximal AUG Canonical S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24494;54;0&p=30&e=30&w=0&f=24495-24548", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24495-24548&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -30.0163 1.0 2.0 -15.00815 -16.1307611111 -13.8855388889 0.983005046394 0.706439850236 0.614797330295 0.592182972489 1.0 0.614797330295 0.388888888889 0.519230769231 0.0 NC_045512.2:22272-22355 - 22272 22355 28 Maximal AAG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22271;84;0&s=-&p=30&e=30&w=0&f=22272-22355-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22272-22355&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -30.1636321429 0.7912 5.14229554595 -5.86579123532 -29.4087035714 -0.754928571471 NA 0.373814097347 0.253175972652 NA 0.857047045418 0.0174377340062 0.416666666667 0.0 0.0 NC_045512.2:23964-23999 - 23964 23999 12 NotMaximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23963;36;0&s=-&p=30&e=30&w=0&f=23964-23999-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23964-23999&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -30.224 1.0 1.88888888889 -16.0009411765 -32.54145 2.31745 NA 1.0 0.506498453524 NA 0.786811004395 0.484867328667 0.277777777778 0.0 0.0 NC_045512.2:2334-2372 + 2334 2372 13 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2333;39;0&p=30&e=30&w=0&f=2334-2372", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:2334-2372&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -30.2329384615 1.0 2.64102564103 -11.447423301 -9.97653076923 -20.2564076923 NA 0.477942373433 0.640540452548 NA 0.948289109556 0.368347712844 0.384615384615 0.0 0.0 NC_045512.2:23964-23993 - 23964 23993 10 NotMaximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23963;30;0&s=-&p=30&e=30&w=0&f=23964-23993-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23964-23993&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -30.24536 1.0 1.93333333333 -15.6441517241 -29.27342 -0.97194 NA 1.0 0.563167833306 NA 0.429510011395 0.429510011395 0.266666666667 0.0 0.0 NC_045512.2:22491-22721 + 22491 22721 77 Maximal AAG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22490;231;0&p=30&e=30&w=0&f=22491-22721", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22491-22721&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -30.256961039 1.0 2.75757575758 -10.9723045526 -24.2285779221 -6.02838311692 NA 0.706439850236 0.576998209344 NA 1.0 0.576998209344 0.354978354978 0.277477477477 0.0 NC_045512.2:22881-23090 + 22881 23090 70 NotMaximal AUC NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22880;210;0&p=30&e=30&w=0&f=22881-23090", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22881-23090&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -30.3346614286 0.8933 5.42165754 -5.59508991573 -24.8996942857 -5.43496714289 NA 0.331828097021 0.537616799609 NA 0.503636659613 0.0 0.357142857143 0.15 0.0 NC_045512.2:21245-21283 - 21245 21283 13 NotMaximal AUC NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21244;39;0&s=-&p=30&e=30&w=0&f=21245-21283-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21245-21283&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -30.3636538462 1.0 1.87179487179 -16.2216780822 -24.3864230769 -5.97723076928 NA 0.601585544522 0.751440664171 NA 0.0 0.0 0.333333333333 0.975 0.0 NC_045512.2:22500-22721 + 22500 22721 74 NotMaximal AUC NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22499;222;0&p=30&e=30&w=0&f=22500-22721", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22500-22721&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -30.3871905405 1.0 2.7972972973 -10.8630536232 -24.3895486486 -5.99764189185 NA 0.706439850236 0.576998209344 NA 0.682399479082 0.398505616148 0.355855855856 0.288311688312 0.0 NC_045512.2:23136-23198 + 23136 23198 21 NotMaximal GUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23135;63;0&p=30&e=30&w=0&f=23136-23198", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23136-23198&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -30.4425428571 1.0 2.5873015873 -11.7661361963 -25.2592285714 -5.18331428567 NA 0.364759889305 0.536662868305 NA 0.97340061859 0.0174377340062 0.301587301587 0.0 0.0 NC_045512.2:23211-23354 + 23211 23354 48 Maximal GUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23210;144;0&p=30&e=30&w=0&f=23211-23354", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23211-23354&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -30.4512104167 1.0 3.02083333333 -10.0804006897 -23.39008125 -7.0611291667 NA 0.76950024418 0.343053882468 NA 0.993556894026 0.343053882468 0.416666666667 0.160177975528 0.1875 NC_045512.2:22884-23090 + 22884 23090 69 NotMaximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22883;207;0&p=30&e=30&w=0&f=22884-23090", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22884-23090&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -30.5191536232 0.8941 5.39073489665 -5.66140873337 -25.2267753623 -5.29237826088 NA 0.331828097021 0.537616799609 NA 0.519407455641 0.0 0.357487922705 0.152205882353 0.0 NC_045512.2:24705-24740 + 24705 24740 12 NotMaximal AUC NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24704;36;0&p=30&e=30&w=0&f=24705-24740", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24705-24740&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -30.5845833333 1.0 2.27777777778 -13.4273780488 -20.2455583333 -10.339025 NA 0.343053882468 0.542353898747 NA 0.716897281459 0.0174377340062 0.5 0.0 0.0 NC_045512.2:19580-19624 + 19580 19624 15 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19579;45;0&p=30&e=30&w=0&f=19580-19624", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19580-19624&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -30.6024 1.0 2.11111111111 -14.4958736842 -20.0233533333 -10.5790466667 NA 1.0 1.0 NA 0.994344782679 0.994344782679 0.333333333333 0.0 0.0 NC_045512.2:23839-23877 + 23839 23877 13 NotMaximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23838;39;0&p=30&e=30&w=0&f=23839-23877", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23839-23877&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -30.6148384615 1.0 2.66666666667 -11.4805644231 -31.0856461538 0.470807692346 NA 0.49765261273 0.876125671496 NA 1.0 0.49765261273 0.358974358974 0.795918367347 0.0 NC_045512.2:2838-2867 + 2838 2867 10 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2837;30;0&p=30&e=30&w=0&f=2838-2867", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:2838-2867&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -30.62221 1.0 2.2 -13.9191863636 -25.52842 -5.09379 NA 0.094488035162 0.899824190135 NA 0.650415106625 0.0 0.466666666667 0.612244897959 0.0 NC_045512.2:21865-21921 + 21865 21921 19 Maximal AAG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21864;57;0&p=30&e=30&w=0&f=21865-21921", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21865-21921&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -30.6538210526 1.0 3.75438596491 -8.16480280373 -41.6779684211 11.0241473685 NA 0.746133810842 0.606723099463 NA 0.584698030278 0.364759889305 0.40350877193 0.431818181818 0.0 NC_045512.2:23977-24015 + 23977 24015 13 Maximal AUU NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23976;39;0&p=30&e=30&w=0&f=23977-24015", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23977-24015&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -30.6810307692 1.0 2.20512820513 -13.9134906977 -38.9930923077 8.31206153849 NA 0.9084291063 0.238427478431 NA 0.701429269087 0.238427478431 0.358974358974 0.0 0.0 NC_045512.2:22887-23090 + 22887 23090 68 NotMaximal AUU NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22886;204;0&p=30&e=30&w=0&f=22887-23090", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22887-23090&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -30.7048661765 0.8953 5.37956472507 -5.70768598311 -25.7845838235 -4.92028235297 NA 0.331828097021 0.537616799609 NA 0.692892723425 0.0 0.357843137255 0.153846153846 0.0 NC_045512.2:4860-4901 + 4860 4901 14 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4859;42;0&p=30&e=30&w=0&f=4860-4901", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4860-4901&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -30.8116857143 1.0 2.69047619048 -11.4521309735 -22.09045 -8.7212357143 NA 0.094488035162 0.80218134462 NA 0.559908839329 0.094488035162 0.333333333333 0.0 0.0 NC_045512.2:481-522 + 481 522 14 Maximal ACG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;480;42;0&p=30&e=30&w=0&f=481-522", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:481-522&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -30.9746928571 1.0 2.64285714286 -11.720154054 -26.1820428571 -4.79264999996 NA 0.631496011721 0.0 NA 0.984346410549 0.0 0.5 1.14545454545 0.0238095238095 NC_045512.2:8103-8141 + 8103 8141 13 Maximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8102;39;0&p=30&e=30&w=0&f=8103-8141", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8103-8141&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -30.9922384615 1.0 2.15384615385 -14.3892535714 -23.1618 -7.8304384615 NA 0.673788051441 0.324828259808 NA 0.766452873189 0.254738727006 0.435897435897 0.0 0.0 NC_045512.2:22872-23090 + 22872 23090 73 Maximal AUU NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22871;219;0&p=30&e=30&w=0&f=22872-23090", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22872-23090&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -31.0114082192 0.8933 5.43428411863 -5.70662253615 -25.1891684932 -5.82223972605 NA 0.331828097021 0.537616799609 NA 0.759407455641 0.0 0.351598173516 0.147972972973 0.0 NC_045512.2:22896-23090 + 22896 23090 65 NotMaximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22895;195;0&p=30&e=30&w=0&f=22896-23090", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22896-23090&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -31.0793246154 0.8956 5.26065638027 -5.90787961973 -26.0549692308 -5.02435538463 NA 0.331828097021 0.447087742146 NA 0.43232948071 0.220058603288 0.358974358974 0.159705159705 0.0 NC_045512.2:22920-23090 + 22920 23090 57 NotMaximal AUA NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22919;171;0&p=30&e=30&w=0&f=22920-23090", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22920-23090&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -31.0847666667 0.9044 5.24156117516 -5.93044049815 -25.9407894737 -5.14397719302 NA 0.331828097021 0.537616799609 NA 0.554654077812 0.220058603288 0.368421052632 0.172379032258 0.0 NC_045512.2:22893-23090 + 22893 23090 66 NotMaximal AGG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22892;198;0&p=30&e=30&w=0&f=22893-23090", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22893-23090&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -31.0923333333 0.8953 5.31158204767 -5.8536859742 -26.2084742424 -4.88385909088 NA 0.331828097021 0.537616799609 NA 0.094488035162 0.0 0.363636363636 0.153846153846 0.0 NC_045512.2:23827-23877 + 23827 23877 17 NotMaximal AUA NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23826;51;0&p=30&e=30&w=0&f=23827-23877", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23827-23877&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -31.1002941176 1.0 2.43137254902 -12.79125 -25.2611117647 -5.83918235289 NA 0.49765261273 0.508080742308 NA 0.340065114765 0.085388246785 0.352941176471 0.6375 0.0 NC_045512.2:24696-24740 + 24696 24740 15 NotMaximal AGG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24695;45;0&p=30&e=30&w=0&f=24696-24740", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24696-24740&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -31.1665066667 1.0 2.35555555556 -13.231064151 -18.45262 -12.7138866667 NA 0.343053882468 0.542353898747 NA 0.917571219274 0.0174377340062 0.511111111111 0.0 0.0 NC_045512.2:22899-23090 + 22899 23090 64 NotMaximal GUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22898;192;0&p=30&e=30&w=0&f=22899-23090", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22899-23090&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -31.196090625 0.8969 5.22778841219 -5.96735907525 -26.2899203125 -4.9061703125 NA 0.331828097021 0.447087742146 NA 0.476545661729 0.220058603288 0.359375 0.161616161616 0.0 NC_045512.2:23007-23090 + 23007 23090 28 NotMaximal GUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23006;84;0&p=30&e=30&w=0&f=23007-23090", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23007-23090&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -31.2531178571 0.8896 4.9894396204 -6.26385330515 -25.7946142857 -5.45850357139 NA 0.331828097021 0.503757121927 NA 0.430493244343 0.0 0.369047619048 0.0 0.0 NC_045512.2:24789-24824 - 24789 24824 12 NotMaximal GUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24788;36;0&s=-&p=30&e=30&w=0&f=24789-24824-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24789-24824&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -31.3782166667 1.0 1.83333333333 -17.1153909091 -20.96415 -10.4140666667 NA 1.0 0.820016278691 NA 1.0 0.820016278691 0.472222222222 0.0 0.611111111111 NC_045512.2:1893-1964 + 1893 1964 24 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;1892;72;0&p=30&e=30&w=0&f=1893-1964", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:1893-1964&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -31.3800458333 1.0 2.40277777778 -13.0599034682 -20.3519 -11.0281458333 NA 0.548012371805 0.807654240599 NA 0.094488035162 0.0894774540127 0.430555555556 1.23076923077 0.0 NC_045512.2:19589-19624 + 19589 19624 12 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19588;36;0&p=30&e=30&w=0&f=19589-19624", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19589-19624&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -31.4202333333 1.0 2.30555555556 -13.628053012 -22.2373083333 -9.18292499997 NA 1.0 1.0 NA 0.802539475826 0.802539475826 0.361111111111 0.0 0.0 NC_045512.2:14171-14206 - 14171 14206 12 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14170;36;0&s=-&p=30&e=30&w=0&f=14171-14206-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14171-14206&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -31.4485083333 1.0 2.11111111111 -14.8966618421 -23.4770333333 -7.97147499997 NA 0.667009604428 0.270525801726 NA 0.0174377340062 0.0 0.444444444444 0.0 0.0 NC_045512.2:21731-21760 - 21731 21760 10 NotMaximal AUG Canonical S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21730;30;0&s=-&p=30&e=30&w=0&f=21731-21760-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21731-21760&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -31.45278 1.0 5.3 -5.93448679245 -48.14 16.68722 0.269848608172 0.419817678659 0.79942699007 0.0174377340062 0.357831678333 0.0174377340062 0.366666666667 0.0 0.0 NC_045512.2:22272-22352 - 22272 22352 27 NotMaximal CUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22271;81;0&s=-&p=30&e=30&w=0&f=22272-22352-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22272-22352&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -31.5062814815 0.7834 5.24633118346 -6.00539317473 -31.2361259259 -0.270155555574 NA 0.373814097347 0.253175972652 NA 0.28212599707 0.0174377340062 0.41975308642 0.0 0.0 NC_045512.2:22905-23090 + 22905 23090 62 NotMaximal AUU NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22904;186;0&p=30&e=30&w=0&f=22905-23090", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22905-23090&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -31.51415 0.9024 5.22630404598 -6.02991133366 -26.6643967742 -4.84975322581 NA 0.331828097021 0.447087742146 NA 0.653198762819 0.220058603288 0.354838709677 0.170798898072 0.0 NC_045512.2:19865-19909 - 19865 19909 15 Maximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19864;45;0&s=-&p=30&e=30&w=0&f=19865-19909-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19865-19909&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -31.5178333333 1.0 2.22222222222 -14.183025 -26.55416 -4.9636733333 NA 0.869451408107 0.494901513918 NA 0.365225459873 0.340719518151 0.4 0.0 0.0 NC_045512.2:22806-22862 + 22806 22862 19 NotMaximal CUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22805;57;0&p=30&e=30&w=0&f=22806-22862", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22806-22862&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -31.5191736842 1.0 2.42105263158 -13.0187891304 -27.8260315789 -3.69314210525 NA 0.844873840143 0.696907048673 NA 0.65221878561 0.386120787889 0.315789473684 0.74025974026 0.0 NC_045512.2:26015-26056 - 26015 26056 14 Maximal CUG NearCognate ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26014;42;0&s=-&p=30&e=30&w=0&f=26015-26056-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26015-26056&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -31.53465 1.0 2.45238095238 -12.8587893204 -26.1272214286 -5.40742857143 NA 0.982445059417 0.432296923327 NA 0.743828748169 0.289412339248 0.404761904762 0.0 0.0 NC_045512.2:8598-8630 + 8598 8630 11 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8597;33;0&p=30&e=30&w=0&f=8598-8630", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8598-8630&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -31.6003454545 1.0 2.90909090909 -10.86261875 -23.3558181818 -8.24452727268 NA 0.094488035162 0.660908350969 NA 0.235318248413 0.085388246785 0.30303030303 0.0 0.0 NC_045512.2:23045-23113 - 23045 23113 23 Maximal AAG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23044;69;0&s=-&p=30&e=30&w=0&f=23045-23113-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23045-23113&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -31.6176956522 1.0 4.33333333333 -7.29639130435 -45.5351173913 13.9174217391 NA 0.0 0.636607520755 NA 0.625632427153 0.0 0.376811594203 0.0 0.0 NC_045512.2:19583-19624 + 19583 19624 14 NotMaximal AUA NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;19582;42;0&p=30&e=30&w=0&f=19583-19624", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:19583-19624&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -31.6758428571 1.0 2.2380952381 -14.1530361702 -21.2903 -10.3855428571 NA 1.0 1.0 NA 0.723395734983 0.723395734983 0.333333333333 0.0 0.0 NC_045512.2:23268-23354 + 23268 23354 29 NotMaximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23267;87;0&p=30&e=30&w=0&f=23268-23354", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23268-23354&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -31.6800793103 1.0 2.81609195402 -11.2496608163 -23.7834310345 -7.89664827582 NA 0.76950024418 0.368347712844 NA 0.0174377340062 0.0174377340062 0.436781609195 0.240997229917 0.310344827586 NC_045512.2:22344-22391 + 22344 22391 16 NotMaximal GUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22343;48;0&p=30&e=30&w=0&f=22344-22391", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22344-22391&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -31.6878875 0.9945 3.85772850124 -8.21413105919 -25.69173125 -5.99615625 NA 0.094488035162 0.409568614683 NA 0.54491616474 0.0174377340062 0.395833333333 0.0 0.0 NC_045512.2:23806-23877 + 23806 23877 24 Maximal AUG Canonical S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23805;72;0&p=30&e=30&w=0&f=23806-23877", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23806-23877&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -31.7126208333 1.0 2.45833333333 -12.9000491525 -28.1403375 -3.5722833333 0.465710564871 0.49765261273 0.31181181833 0.0 1.0 0.278694448966 0.361111111111 0.428571428571 0.0 NC_045512.2:24702-24740 + 24702 24740 13 NotMaximal AUC NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24701;39;0&p=30&e=30&w=0&f=24702-24740", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24702-24740&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -31.7176923077 1.0 2.30769230769 -13.7443333333 -19.6986769231 -12.0190153846 NA 0.343053882468 0.542353898747 NA 0.746224971512 0.0174377340062 0.487179487179 0.0 0.0 NC_045512.2:23045-23101 - 23045 23101 19 NotMaximal AAG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23044;57;0&s=-&p=30&e=30&w=0&f=23045-23101-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23045-23101&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -31.7268473684 1.0 4.71929824561 -6.72278921933 -48.1994157895 16.4725684211 NA 0.0 0.814751749959 NA 0.859078626078 0.0 0.40350877193 0.0 0.0 NC_045512.2:26536-26586 + 26536 26586 17 NotMaximal ACG NearCognate M =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26535;51;0&p=30&e=30&w=0&f=26536-26586", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26536-26586&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -31.7279529412 1.0 2.07843137255 -15.2653358491 -13.9918176471 -17.7361352941 NA 0.972840631613 0.846075207553 NA 0.912111346248 0.818915839167 0.411764705882 0.927272727273 0.0 NC_045512.2:25589-25807 - 25589 25807 73 Maximal AUG Canonical ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25588;219;0&s=-&p=30&e=30&w=0&f=25589-25807-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25589-25807&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -31.7865438356 1.0 2.73515981735 -11.621457596 -31.1139178082 -0.672626027381 0.845752889468 0.660022790168 0.0 0.0 0.884317108904 0.0 0.406392694064 0.22188449848 0.0 NC_045512.2:23220-23354 + 23220 23354 45 NotMaximal CUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23219;135;0&p=30&e=30&w=0&f=23220-23354", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23220-23354&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -31.7882288889 1.0 3.05185185185 -10.4160458738 -23.5727711111 -8.21545777779 NA 0.76950024418 0.368347712844 NA 0.470691844376 0.085388246785 0.422222222222 0.166666666667 0.2 NC_045512.2:21245-21304 - 21245 21304 20 Maximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21244;60;0&s=-&p=30&e=30&w=0&f=21245-21304-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21245-21304&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -31.814705 1.0 1.96666666667 -16.1769686441 -25.32006 -6.494645 NA 0.601585544522 0.0174377340062 NA 0.73924141299 0.0 0.35 0.545454545455 0.0 NC_045512.2:3741-3779 - 3741 3779 13 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;3740;39;0&s=-&p=30&e=30&w=0&f=3741-3779-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:3741-3779&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -31.8638923077 1.0 2.74358974359 -11.6139420561 -26.2455615385 -5.61833076924 NA 0.333954094091 0.855038254924 NA 0.631675077324 0.0 0.333333333333 0.928571428571 0.0 NC_045512.2:22908-23090 + 22908 23090 61 NotMaximal AUA NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22907;183;0&p=30&e=30&w=0&f=22908-23090", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22908-23090&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -31.8647163934 0.9052 5.25935589227 -6.05867278163 -26.7243344262 -5.14038196717 NA 0.331828097021 0.447087742146 NA 0.307038906072 0.0 0.360655737705 0.168044077135 0.0 NC_045512.2:23023-23061 + 23023 23061 13 Maximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23022;39;0&p=30&e=30&w=0&f=23023-23061", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23023-23061&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -31.8660384615 0.9003 4.85101071345 -6.5689482757 -28.4214769231 -3.44456153842 NA 0.310021162299 0.333954094091 NA 0.627719355364 0.0 0.358974358974 0.0 0.0 NC_045512.2:8094-8141 - 8094 8141 16 NotMaximal AGG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8093;48;0&s=-&p=30&e=30&w=0&f=8094-8141-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8094-8141&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -31.87093125 1.0 2.41666666667 -13.1879715517 -29.6092 -2.26173125 NA 0.882562265994 0.292114601986 NA 0.979550708123 0.253840143252 0.416666666667 0.0 0.0 NC_045512.2:22341-22391 + 22341 22391 17 NotMaximal CUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22340;51;0&p=30&e=30&w=0&f=22341-22391", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22341-22391&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -31.8881941176 0.9927 3.91557460265 -8.14393731536 -26.1067588235 -5.78143529407 NA 0.094488035162 0.409568614683 NA 0.488181670194 0.0174377340062 0.411764705882 0.0 0.0 NC_045512.2:23256-23354 + 23256 23354 33 NotMaximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23255;99;0&p=30&e=30&w=0&f=23256-23354", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23256-23354&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -31.9393575758 1.0 2.9696969697 -10.7550897959 -22.8683151515 -9.07104242428 NA 0.76950024418 0.368347712844 NA 0.947478430734 0.368347712844 0.444444444444 0.204968944099 0.272727272727 NC_045512.2:7209-7241 - 7209 7241 11 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;7208;33;0&s=-&p=30&e=30&w=0&f=7209-7241-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:7209-7241&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -32.0334909091 1.0 2.36363636364 -13.5526307692 -33.6768090909 1.64331818181 NA 0.094488035162 0.797082858538 NA 0.094488035162 0.094488035162 0.393939393939 0.0 0.0 NC_045512.2:4866-4901 + 4866 4901 12 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4865;36;0&p=30&e=30&w=0&f=4866-4901", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4866-4901&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -32.10755 1.0 2.77777777778 -11.558718 -21.7821333333 -10.3254166667 NA 0.094488035162 0.80218134462 NA 1.0 0.094488035162 0.388888888889 0.0 0.0 NC_045512.2:21993-22196 + 21993 22196 68 NotMaximal AUU NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21992;204;0&p=30&e=30&w=0&f=21993-22196", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21993-22196&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -32.1400470588 0.922 5.63100002756 -5.70769790473 -24.0741338235 -8.06591323527 NA 0.410525801726 0.33554615009 NA 0.500514406642 0.0174377340062 0.308823529412 0.41975308642 0.0 NC_045512.2:21751-21789 + 21751 21789 13 NotMaximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21750;39;0&p=30&e=30&w=0&f=21751-21789", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21751-21789&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -32.2576461538 0.9168 8.02517525271 -4.01955660008 -39.6938538462 7.43620769235 NA 0.0174377340062 0.274540126974 NA 0.571023929676 0.0174377340062 0.461538461538 0.0 0.0 NC_045512.2:22911-23090 + 22911 23090 60 NotMaximal AUU NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22910;180;0&p=30&e=30&w=0&f=22911-23090", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22911-23090&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -32.2872583333 0.9062 5.21743274003 -6.18834203373 -26.6384733333 -5.64878499997 NA 0.331828097021 0.537616799609 NA 0.620706495198 0.0 0.366666666667 0.165289256198 0.0 NC_045512.2:22830-22862 + 22830 22862 11 NotMaximal AUA NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22829;33;0&p=30&e=30&w=0&f=22830-22862", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22830-22862&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -32.5097363636 1.0 3.09090909091 -10.5178558823 -38.2851545455 5.77541818185 NA 0.844873840143 0.730265342666 NA 0.776526127299 0.59913071789 0.333333333333 1.1 0.0 NC_045512.2:21868-21921 + 21868 21921 18 NotMaximal AGG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21867;54;0&p=30&e=30&w=0&f=21868-21921", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21868-21921&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -32.5240388889 1.0 3.62962962963 -8.96070459184 -41.5841555556 9.06011666666 NA 0.746133810842 0.643815725216 NA 0.733960605567 0.343053882468 0.407407407407 0.446280991736 0.0 NC_045512.2:24498-24548 + 24498 24548 17 NotMaximal AUA NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;24497;51;0&p=30&e=30&w=0&f=24498-24548", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:24498-24548&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -32.5478941176 1.0 2.09803921569 -15.513482243 -17.0973823529 -15.4505117647 NA 0.706439850236 0.614797330295 NA 0.617691681589 0.428757935862 0.392156862745 0.53125 0.0 NC_045512.2:23013-23090 + 23013 23090 26 NotMaximal AAG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23012;78;0&p=30&e=30&w=0&f=23013-23090", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23013-23090&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -32.5681807692 0.9035 4.94583245163 -6.58497453922 -27.7534538462 -4.81472692305 NA 0.331828097021 0.567016115904 NA 0.0174377340062 0.0 0.358974358974 0.0 0.0 NC_045512.2:22827-22862 + 22827 22862 12 NotMaximal AUU NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22826;36;0&p=30&e=30&w=0&f=22827-22862", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22827-22862&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -32.5799416667 1.0 2.94444444444 -11.0648858491 -37.368375 4.7884333333 NA 0.844873840143 0.730265342666 NA 0.949656519616 0.62717239134 0.305555555556 1.2 0.0 NC_045512.2:21954-22196 + 21954 22196 81 NotMaximal GUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21953;243;0&p=30&e=30&w=0&f=21954-22196", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21954-22196&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -32.6309506173 0.9345 5.4638847968 -5.97211541437 -24.1166753086 -8.51427530866 NA 0.410525801726 0.33554615009 NA 0.0174377340062 0.0174377340062 0.304526748971 0.368181818182 0.0 NC_045512.2:23010-23090 + 23010 23090 27 NotMaximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23009;81;0&p=30&e=30&w=0&f=23010-23090", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23010-23090&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -32.6383185185 0.8993 4.99722605724 -6.53128718706 -26.8797814815 -5.75853703702 NA 0.331828097021 0.503757121927 NA 0.660511150903 0.220058603288 0.358024691358 0.0 0.0 NC_045512.2:21948-22196 + 21948 22196 83 NotMaximal AAG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21947;249;0&p=30&e=30&w=0&f=21948-22196", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21948-22196&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -32.6653289157 0.9361 5.42861046434 -6.01725416297 -23.9566084337 -8.70872048197 NA 0.410525801726 0.33554615009 NA 0.903972000651 0.0174377340062 0.305220883534 0.356989247312 0.0 NC_045512.2:21871-21921 + 21871 21921 17 NotMaximal CUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21870;51;0&p=30&e=30&w=0&f=21871-21921", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21871-21921&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -32.7704 1.0 3.6862745098 -8.88984255319 -43.3449529412 10.5745529412 NA 0.746133810842 0.643815725216 NA 1.0 0.554689890933 0.392156862745 0.515151515152 0.0 NC_045512.2:870-902 - 870 902 11 Maximal AUG Canonical orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;869;33;0&s=-&p=30&e=30&w=0&f=870-902-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:870-902&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -32.8399727273 1.0 2.30303030303 -14.2594618421 -35.0263090909 2.18633636361 0.0894774540127 0.912111346248 0.827022627381 0.0894774540127 0.094488035162 0.094488035162 0.454545454545 0.589285714286 0.0 NC_045512.2:20489-20533 + 20489 20533 15 NotMaximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20488;45;0&p=30&e=30&w=0&f=20489-20533", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20489-20533&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -32.854 1.0 1.86666666667 -17.6003571429 -17.3527866667 -15.5012133333 NA 1.0 0.814631287644 NA 0.921299039557 0.763089695588 0.266666666667 0.0 0.0 NC_045512.2:21972-22196 + 21972 22196 75 NotMaximal AUG Canonical S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21971;225;0&p=30&e=30&w=0&f=21972-22196", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21972-22196&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -32.883184 0.9293 5.58988446943 -5.88262318834 -24.4978133333 -8.38537066667 0.0883998046557 0.410525801726 0.33554615009 0.0174377340062 0.871762982256 0.0174377340062 0.311111111111 0.378469301934 0.0 NC_045512.2:21987-22196 + 21987 22196 70 NotMaximal GUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21986;210;0&p=30&e=30&w=0&f=21987-22196", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21987-22196&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -32.9905271429 0.9242 5.64630478867 -5.84285269351 -23.7804257143 -9.21010142861 NA 0.410525801726 0.33554615009 NA 0.695634055022 0.0174377340062 0.309523809524 0.409356725146 0.0 NC_045512.2:26530-26586 + 26530 26586 19 Maximal AUU NearCognate M =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;26529;57;0&p=30&e=30&w=0&f=26530-26586", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:26530-26586&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -33.0035631579 0.9995 2.30034006341 -14.3472539921 -14.4473052632 -18.5562578947 NA 0.972840631613 0.846075207553 NA 0.665551033697 0.596942861794 0.40350877193 0.876923076923 0.0 NC_045512.2:21975-22196 + 21975 22196 74 NotMaximal AUC NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21974;222;0&p=30&e=30&w=0&f=21975-22196", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21975-22196&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -33.1203256757 0.9283 5.58884687217 -5.92614656176 -24.6915783784 -8.42874729732 NA 0.410525801726 0.33554615009 NA 0.660172554127 0.0174377340062 0.310810810811 0.38275862069 0.0 NC_045512.2:22893-22925 - 22893 22925 11 Maximal AUC NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22892;33;0&s=-&p=30&e=30&w=0&f=22893-22925-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22893-22925&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -33.5072363636 0.8639 5.40937480296 -6.19429002133 -42.0644090909 8.55717272731 NA 0.314807097509 0.899348852352 NA 0.465948233762 0.257607032395 0.30303030303 0.0 0.0 NC_045512.2:21927-22196 + 21927 22196 90 NotMaximal ACG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21926;270;0&p=30&e=30&w=0&f=21927-22196", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21927-22196&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -33.61004 0.9411 5.31379261341 -6.32505678057 -23.6285011111 -9.98153888889 NA 0.410525801726 0.307104020837 NA 0.92733843399 0.0174377340062 0.303703703704 0.496323529412 0.0 NC_045512.2:21939-22196 + 21939 22196 86 NotMaximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21938;258;0&p=30&e=30&w=0&f=21939-22196", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21939-22196&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -33.6379709302 0.9383 5.39040312256 -6.24034421274 -23.9532116279 -9.68475930229 NA 0.410525801726 0.307104020837 NA 0.606723099463 0.0174377340062 0.298449612403 0.361851332398 0.0 NC_045512.2:23045-23080 - 23045 23080 12 NotMaximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23044;36;0&s=-&p=30&e=30&w=0&f=23045-23080-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23045-23080&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -33.6442583333 1.0 5.44444444444 -6.17955765306 -43.4044333333 9.76017500003 NA 0.0 0.814751749959 NA 1.0 0.0 0.416666666667 0.0 0.0 NC_045512.2:25589-25789 - 25589 25789 67 NotMaximal AUU NearCognate ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25588;201;0&s=-&p=30&e=30&w=0&f=25589-25789-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25589-25789&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -33.6450343284 1.0 2.81094527363 -11.9692953982 -32.6349656716 -1.01006865676 NA 0.660022790168 0.0 NA 0.452648543057 0.0 0.398009950249 0.125625 0.0 NC_045512.2:22419-22478 - 22419 22478 20 Maximal AGG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22418;60;0&s=-&p=30&e=30&w=0&f=22419-22478-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22419-22478&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -33.67759 1.0 3.26666666667 -10.3094663265 -27.29885 -6.37874 NA 0.787087742146 0.094488035162 NA 0.0174377340062 0.0174377340062 0.45 0.333333333333 0.0 NC_045512.2:23964-24011 - 23964 24011 16 Maximal AUG Canonical S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23963;48;0&s=-&p=30&e=30&w=0&f=23964-24011-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23964-24011&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -33.682475 1.0 2.04166666667 -16.4975387755 -32.386475 -1.296 0.521706006837 1.0 0.429510011395 0.403727820283 1.0 0.429510011395 0.333333333333 0.0 0.0 NC_045512.2:22347-22391 + 22347 22391 15 NotMaximal CUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22346;45;0&p=30&e=30&w=0&f=22347-22391", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22347-22391&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -33.8883133333 0.9972 3.78889369829 -8.94411826561 -25.6149266667 -8.27338666663 NA 0.094488035162 0.409568614683 NA 0.616262412502 0.0174377340062 0.377777777778 0.0 0.0 NC_045512.2:21924-22196 + 21924 22196 91 NotMaximal AUA NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21923;273;0&p=30&e=30&w=0&f=21924-22196", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21924-22196&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -33.961432967 0.9417 5.28836632096 -6.42191385881 -23.5647494505 -10.3966835165 NA 0.410525801726 0.307104020837 NA 0.815334527104 0.0174377340062 0.300366300366 0.501838235294 0.0 NC_045512.2:22815-22862 + 22815 22862 16 NotMaximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22814;48;0&p=30&e=30&w=0&f=22815-22862", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22815-22862&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -33.96345 1.0 2.60416666667 -13.0419648 -31.5863125 -2.3771375 NA 0.844873840143 0.696907048673 NA 0.966641706007 0.61983395735 0.291666666667 1.0 0.0 NC_045512.2:22818-22862 + 22818 22862 15 NotMaximal CUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22817;45;0&p=30&e=30&w=0&f=22818-22862", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22818-22862&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -34.0536866667 1.0 2.75555555556 -12.3581927419 -32.65756 -1.3961266667 NA 0.844873840143 0.730265342666 NA 0.886312876445 0.549936513104 0.288888888889 1.07142857143 0.0 NC_045512.2:4350-4382 - 4350 4382 11 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;4349;33;0&s=-&p=30&e=30&w=0&f=4350-4382-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:4350-4382&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -34.0662909091 1.0 2.42424242424 -14.052345 -34.6305636364 0.564272727264 NA 0.87713495035 0.630349991861 NA 1.0 0.424678495849 0.333333333333 0.0 0.0 NC_045512.2:22110-22196 + 22110 22196 29 NotMaximal AGG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22109;87;0&p=30&e=30&w=0&f=22110-22196", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22110-22196&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -34.0783206897 1.0 4.89655172414 -6.95965704226 -23.7761793103 -10.3021413794 NA 0.410525801726 0.552430408595 NA 0.637571219274 0.253175972652 0.252873563218 0.776785714286 0.0 NC_045512.2:23985-24038 + 23985 24038 18 NotMaximal AUC NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23984;54;0&p=30&e=30&w=0&f=23985-24038", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23985-24038&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -34.2487777778 1.0 2.38888888889 -14.3366976744 -21.3460722222 -12.9027055556 NA 0.652410874166 0.866342178089 NA 0.425593358294 0.398206088231 0.333333333333 0.0 0.0 NC_045512.2:22101-22196 + 22101 22196 32 NotMaximal AAG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22100;96;0&p=30&e=30&w=0&f=22101-22196", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22101-22196&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -34.269134375 1.0 5.125 -6.68666036585 -24.025365625 -10.24376875 NA 0.410525801726 0.535435454989 NA 0.558707471919 0.0174377340062 0.260416666667 0.666666666667 0.0 NC_045512.2:21825-21860 + 21825 21860 12 NotMaximal AUG Canonical S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21824;36;0&p=30&e=30&w=0&f=21825-21860", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21825-21860&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -34.294375 1.0 3.22222222222 -10.6430818966 -28.980875 -5.3135 0.879860003256 0.445668240273 0.912111346248 0.366163112486 1.0 0.445668240273 0.361111111111 0.0 0.0 NC_045512.2:22272-22331 - 22272 22331 20 NotMaximal CUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22271;60;0&s=-&p=30&e=30&w=0&f=22272-22331-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22272-22331&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -34.32887 0.715 5.17671401958 -6.63140167106 -31.961455 -2.367415 NA 0.373814097347 0.253175972652 NA 0.0174377340062 0.0174377340062 0.35 0.0 0.0 NC_045512.2:22149-22196 + 22149 22196 16 NotMaximal AUA NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22148;48;0&p=30&e=30&w=0&f=22149-22196", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22149-22196&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -34.3392375 1.0 5.66666666667 -6.05986544118 -25.90606875 -8.43316875 NA 0.410525801726 0.565941722286 NA 0.966641706007 0.307556568452 0.229166666667 1.6 0.0 NC_045512.2:14171-14200 - 14171 14200 10 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;14170;30;0&s=-&p=30&e=30&w=0&f=14171-14200-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:14171-14200&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -34.51516 1.0 2.4 -14.3813166667 -26.19081 -8.32435 NA 0.667009604428 0.270525801726 NA 0.225990558359 0.0 0.433333333333 0.0 0.0 NC_045512.2:22419-22454 - 22419 22454 12 NotMaximal CUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22418;36;0&s=-&p=30&e=30&w=0&f=22419-22454-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22419-22454&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -34.5786666667 1.0 3.16666666667 -10.9195789474 -29.95725 -4.6214166667 NA 0.787087742146 0.789793260622 NA 0.48815236855 0.249363503174 0.527777777778 0.0 0.0 NC_045512.2:22098-22196 + 22098 22196 33 NotMaximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22097;99;0&p=30&e=30&w=0&f=22098-22196", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22098-22196&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -34.5913181818 1.0 5.23232323232 -6.61108204633 -24.3581424242 -10.2331757576 NA 0.410525801726 0.535435454989 NA 0.444092462966 0.253175972652 0.262626262626 0.647058823529 0.0 NC_045512.2:22155-22196 + 22155 22196 14 NotMaximal AUG Canonical S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22154;42;0&p=30&e=30&w=0&f=22155-22196", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22155-22196&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -34.6919357143 1.0 5.71428571429 -6.07108875 -28.6555214286 -6.03641428573 0.887292853655 0.410525801726 0.74990721146 0.303187367736 0.979550708123 0.307556568452 0.238095238095 1.75 0.0 NC_045512.2:22356-22391 + 22356 22391 12 NotMaximal AUU NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22355;36;0&p=30&e=30&w=0&f=22356-22391", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22356-22391&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -34.79285 1.0 4.05555555556 -8.57905890411 -27.4449666667 -7.34788333333 NA 0.094488035162 0.409568614683 NA 0.860380921374 0.094488035162 0.333333333333 0.0 0.0 NC_045512.2:22824-22862 + 22824 22862 13 NotMaximal AUA NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22823;39;0&p=30&e=30&w=0&f=22824-22862", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22824-22862&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -34.8049615385 1.0 2.94871794872 -11.8034217391 -35.6452 0.8402384615 NA 0.844873840143 0.730265342666 NA 0.680514406642 0.524489663031 0.282051282051 1.3 0.0 NC_045512.2:20498-20533 + 20498 20533 12 NotMaximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20497;36;0&p=30&e=30&w=0&f=20498-20533", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20498-20533&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -34.8493 1.0 1.88888888889 -18.4496294118 -16.6793666667 -18.1699333333 NA 1.0 0.814631287644 NA 1.0 0.814631287644 0.222222222222 0.0 0.0 NC_045512.2:23157-23198 + 23157 23198 14 NotMaximal AUU NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23156;42;0&p=30&e=30&w=0&f=23157-23198", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23157-23198&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -34.8938142857 1.0 2.47619047619 -14.0917326923 -23.4374785714 -11.4563357143 NA 0.364759889305 0.536662868305 NA 0.0 0.0 0.261904761905 0.0 0.0 NC_045512.2:21918-22196 + 21918 22196 93 NotMaximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21917;279;0&p=30&e=30&w=0&f=21918-22196", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21918-22196&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -34.918327957 0.943 5.25707528897 -6.64215862198 -23.6925817204 -11.2257462366 NA 0.410525801726 0.0174377340062 NA 0.355845678007 0.0174377340062 0.297491039427 0.502400960384 0.0 NC_045512.2:21731-21769 - 21731 21769 13 Maximal AUG Canonical S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21730;39;0&s=-&p=30&e=30&w=0&f=21731-21769-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21731-21769&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -35.0145307692 1.0 5.33333333333 -6.56522451923 -49.3368384615 14.3223076923 0.0174377340062 0.419817678659 0.40482500407 0.0174377340062 0.729265831027 0.0174377340062 0.358974358974 0.0 0.0 NC_045512.2:22041-22196 + 22041 22196 52 NotMaximal AUU NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22040;156;0&p=30&e=30&w=0&f=22041-22196", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22041-22196&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -35.0582942308 0.9932 5.54815714084 -6.31890794381 -25.8923384615 -9.16595576926 NA 0.410525801726 0.355910792772 NA 0.806781702751 0.0 0.301282051282 0.571428571429 0.0 NC_045512.2:870-899 - 870 899 10 NotMaximal AAG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;869;30;0&s=-&p=30&e=30&w=0&f=870-899-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:870-899&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -35.07297 1.0 2.3 -15.2491173913 -34.78759 -0.28538 NA 0.912111346248 0.827022627381 NA 0.788702588312 0.495142438548 0.466666666667 0.612244897959 0.0 NC_045512.2:21828-21860 + 21828 21860 11 NotMaximal GUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21827;33;0&p=30&e=30&w=0&f=21828-21860", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21828-21860&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -35.0893545455 1.0 3.30303030303 -10.6233825688 -30.5550181818 -4.53433636368 NA 0.445668240273 0.912111346248 NA 0.63898420967 0.343688751424 0.363636363636 0.0 0.0 NC_045512.2:23022-23090 + 23022 23090 23 NotMaximal AUU NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23021;69;0&p=30&e=30&w=0&f=23022-23090", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23022-23090&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -35.1214 0.9409 4.96256210938 -7.07727162419 -29.9215478261 -5.19985217391 NA 0.331828097021 0.711004395247 NA 0.695627543545 0.229158391665 0.376811594203 0.0 0.0 NC_045512.2:22232-22279 - 22232 22279 16 Maximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22231;48;0&s=-&p=30&e=30&w=0&f=22232-22279-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22232-22279&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -35.13809375 1.0 4.70833333333 -7.4629579646 -42.314275 7.17618125 NA 0.708562591568 0.624427804005 NA 0.266534266645 0.0174377340062 0.354166666667 0.0 0.0 NC_045512.2:22065-22196 + 22065 22196 44 NotMaximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22064;132;0&p=30&e=30&w=0&f=22065-22196", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22065-22196&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -35.1435113636 0.9921 5.72150444378 -6.14235498878 -25.2436454545 -9.89986590905 NA 0.410525801726 0.355910792772 NA 0.860302783656 0.0174377340062 0.295454545455 0.352941176471 0.0 NC_045512.2:22116-22196 + 22116 22196 27 NotMaximal AUU NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22115;81;0&p=30&e=30&w=0&f=22116-22196", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22116-22196&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -35.2465407407 1.0 4.93827160494 -7.13742449999 -25.1418481481 -10.1046925926 NA 0.410525801726 0.552430408595 NA 0.614976395898 0.0174377340062 0.234567901235 0.920454545455 0.0 NC_045512.2:22125-22196 + 22125 22196 24 NotMaximal AUC NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22124;72;0&p=30&e=30&w=0&f=22125-22196", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22125-22196&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -35.4477541667 1.0 5.05555555556 -7.01164368133 -26.9550208333 -8.49273333337 NA 0.410525801726 0.552430408595 NA 0.654927559824 0.0174377340062 0.25 0.935064935065 0.0 NC_045512.2:22056-22196 + 22056 22196 47 NotMaximal AUU NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22055;141;0&p=30&e=30&w=0&f=22056-22196", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22056-22196&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -35.5057191489 0.9926 5.47686940836 -6.48284932533 -25.9998531915 -9.50586595741 NA 0.410525801726 0.355910792772 NA 0.966641706007 0.0174377340062 0.297872340426 0.322654462243 0.0 NC_045512.2:22821-22862 + 22821 22862 14 NotMaximal AUU NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22820;42;0&p=30&e=30&w=0&f=22821-22862", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22821-22862&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -35.5065928571 1.0 2.85714285714 -12.4273075 -35.0395857143 -0.467007142814 NA 0.844873840143 0.730265342666 NA 0.647794237343 0.460100927885 0.261904761905 1.4 0.0 NC_045512.2:22047-22196 + 22047 22196 50 NotMaximal GUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22046;150;0&p=30&e=30&w=0&f=22047-22196", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22047-22196&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -35.573816 0.9929 5.53008342648 -6.43278107337 -26.097688 -9.476128 NA 0.410525801726 0.355910792772 NA 0.909822562266 0.0174377340062 0.306666666667 0.576923076923 0.0 NC_045512.2:20504-20533 + 20504 20533 10 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;20503;30;0&p=30&e=30&w=0&f=20504-20533", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:20504-20533&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -35.73234 1.0 1.93333333333 -18.4822448276 -15.98841 -19.74393 NA 1.0 0.828517011232 NA 0.865111509035 0.803223180856 0.2 0.0 0.0 NC_045512.2:21894-22196 + 21894 22196 101 Maximal AUU NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21893;303;0&p=30&e=30&w=0&f=21894-22196", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21894-22196&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -35.7416594059 0.9475 5.20700991954 -6.86414275336 -24.2895792079 -11.452080198 NA 0.410525801726 0.0174377340062 NA 0.431395083835 0.0174377340062 0.310231023102 0.554945054945 0.0 NC_045512.2:22137-22196 + 22137 22196 20 NotMaximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22136;60;0&p=30&e=30&w=0&f=22137-22196", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22137-22196&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -35.874965 1.0 5.35 -6.70560093458 -28.451005 -7.42396 NA 0.410525801726 0.565941722286 NA 0.815979163275 0.298456780075 0.233333333333 1.25 0.0 NC_045512.2:8166-8198 - 8166 8198 11 Maximal CUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8165;33;0&s=-&p=30&e=30&w=0&f=8166-8198-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8166-8198&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -35.9108545455 1.0 2.51515151515 -14.2778096386 -30.0749545455 -5.83590000005 NA 0.505775679635 0.890405339411 NA 0.094488035162 0.094488035162 0.484848484848 0.55 0.0 NC_045512.2:22026-22196 + 22026 22196 57 NotMaximal GUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22025;171;0&p=30&e=30&w=0&f=22026-22196", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22026-22196&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -35.980122807 0.9938 5.6345761051 -6.38559532002 -26.4766666667 -9.50345614033 NA 0.410525801726 0.355910792772 NA 0.409956047534 0.0174377340062 0.309941520468 0.50146627566 0.0 NC_045512.2:22419-22475 - 22419 22475 19 NotMaximal AUU NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22418;57;0&s=-&p=30&e=30&w=0&f=22419-22475-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22419-22475&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -35.9902210526 1.0 3.19298245614 -11.2716626374 -29.2425684211 -6.74765263155 NA 0.787087742146 0.094488035162 NA 0.094488035162 0.094488035162 0.438596491228 0.365384615385 0.0 NC_045512.2:22359-22391 + 22359 22391 11 Maximal AUG Canonical S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22358;33;0&p=30&e=30&w=0&f=22359-22391", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22359-22391&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -35.9999545455 1.0 4.27272727273 -8.42552127661 -25.6539 -10.3460545455 0.502562265994 0.094488035162 0.409568614683 0.0174377340062 0.928985837539 0.0174377340062 0.363636363636 0.0 0.0 NC_045512.2:21635-21679 - 21635 21679 15 Maximal AGG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21634;45;0&s=-&p=30&e=30&w=0&f=21635-21679-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21635-21679&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -36.06204 0.9679 5.34142699029 -6.75138686077 -38.1208933333 2.05885333333 NA 0.0174377340062 0.0 NA 0.669790004884 0.0 0.444444444444 0.6 0.0 NC_045512.2:22071-22196 + 22071 22196 42 NotMaximal AUG Canonical S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22070;126;0&p=30&e=30&w=0&f=22071-22196", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22071-22196&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -36.0766452381 0.9917 5.7241157665 -6.30257086155 -26.4458428571 -9.63080238096 0.353967117044 0.410525801726 0.355910792772 0.0174377340062 0.611141136253 0.0174377340062 0.301587301587 0.352941176471 0.0 NC_045512.2:22053-22196 + 22053 22196 48 NotMaximal AUA NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22052;144;0&p=30&e=30&w=0&f=22053-22196", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22053-22196&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -36.1089791667 0.9928 5.48776796235 -6.57990268802 -25.7789104167 -10.33006875 NA 0.410525801726 0.355910792772 NA 0.250913234576 0.0174377340062 0.291666666667 0.329519450801 0.0 NC_045512.2:22272-22328 - 22272 22328 19 NotMaximal AAG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22271;57;0&s=-&p=30&e=30&w=0&f=22272-22328-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22272-22328&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -36.2908263158 0.7172 5.2386463364 -6.92751981818 -33.6617157895 -2.62911052633 NA 0.373814097347 0.0174377340062 NA 0.0174377340062 0.0174377340062 0.333333333333 0.0 0.0 NC_045512.2:21768-21860 + 21768 21860 31 NotMaximal AUG Canonical S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21767;93;0&p=30&e=30&w=0&f=21768-21860", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21768-21860&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -36.5131548387 0.9394 5.4528631544 -6.69614362306 -26.4330645161 -10.0800903226 0.420602311574 0.445668240273 0.484531987628 0.0174377340062 0.731629496988 0.0174377340062 0.397849462366 0.0 0.0 S.iORF2 NC_045512.2:21612-21860 + 21612 21860 83 NotMaximal AUC NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21611;249;0&p=30&e=30&w=0&f=21612-21860", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21612-21860&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -36.6938686747 0.9658 5.49262086427 -6.68057555427 -29.8267216867 -6.86714698795 NA 0.445668240273 0.0 NA 0.441894839655 0.0 0.385542168675 0.115277777778 0.0 NC_045512.2:21822-21860 + 21822 21860 13 NotMaximal AUG Canonical S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21821;39;0&p=30&e=30&w=0&f=21822-21860", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21822-21860&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -36.7704230769 1.0 3.48717948718 -10.5444595588 -26.6063461538 -10.1640769231 0.216890769982 0.445668240273 0.887605404525 0.0 0.874221064626 0.397297737262 0.358974358974 0.0 0.0 NC_045512.2:25589-25723 - 25589 25723 45 NotMaximal AAG NearCognate ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25588;135;0&s=-&p=30&e=30&w=0&f=25589-25723-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25589-25723&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -36.8803444444 1.0 2.81481481481 -13.1022276316 -35.0213222222 -1.85902222218 NA 0.660022790168 0.524125020348 NA 0.647738889793 0.0 0.42962962963 0.162259615385 0.0 NC_045512.2:22272-22340 - 22272 22340 23 NotMaximal CUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22271;69;0&s=-&p=30&e=30&w=0&f=22272-22340-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22272-22340&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -36.9649478261 0.7512 5.48200755254 -6.74295820862 -33.6843217391 -3.28062608697 NA 0.373814097347 0.253175972652 NA 0.0174377340062 0.0174377340062 0.376811594203 0.0 0.0 NC_045512.2:21606-21860 + 21606 21860 85 Maximal GUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21605;255;0&p=30&e=30&w=0&f=21606-21860", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21606-21860&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -37.1928952941 0.9665 5.53234648055 -6.7228065749 -29.9497717647 -7.24312352939 NA 0.445668240273 0.0 NA 0.299791632753 0.0 0.38431372549 0.111842105263 0.0 NC_045512.2:22419-22469 - 22419 22469 17 NotMaximal ACG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22418;51;0&s=-&p=30&e=30&w=0&f=22419-22469-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22419-22469&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -37.1952352941 1.0 3.21568627451 -11.5668109756 -28.2490647059 -8.94617058822 NA 0.787087742146 0.616714960117 NA 0.418189809539 0.094488035162 0.470588235294 0.356643356643 0.0 NC_045512.2:21635-21673 - 21635 21673 13 NotMaximal AUA NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21634;39;0&s=-&p=30&e=30&w=0&f=21635-21673-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21635-21673&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -37.2828 0.963 5.7272875529 -6.50967838714 -38.5772461538 1.29444615385 NA 0.0174377340062 0.0 NA 0.902285528244 0.0 0.435897435897 0.65 0.0 NC_045512.2:22152-22196 + 22152 22196 15 NotMaximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22151;45;0&p=30&e=30&w=0&f=22152-22196", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22152-22196&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -37.29892 1.0 5.8 -6.43084827586 -25.64762 -11.6513 NA 0.410525801726 0.565941722286 NA 0.577815399642 0.253175972652 0.244444444444 1.5 0.0 NC_045512.2:21948-21980 - 21948 21980 11 Maximal AUG Canonical S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21947;33;0&s=-&p=30&e=30&w=0&f=21948-21980-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21948-21980&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -37.5013909091 1.0 4.15151515152 -9.03318175183 -33.9828909091 -3.51850000001 0.309510011395 0.548663519453 0.711538336318 0.266195669868 0.562581800423 0.291489500244 0.272727272727 0.0 0.0 NC_045512.2:23848-23877 + 23848 23877 10 NotMaximal AUU NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23847;30;0&p=30&e=30&w=0&f=23848-23877", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23848-23877&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -37.52114 1.0 2.93333333333 -12.7912977273 -34.20306 -3.31808 NA 0.49765261273 0.876125671496 NA 0.458818167019 0.336467524011 0.366666666667 1.0 0.0 NC_045512.2:22419-22460 - 22419 22460 14 NotMaximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22418;42;0&s=-&p=30&e=30&w=0&f=22419-22460-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22419-22460&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -37.55175 1.0 3.14285714286 -11.9482840909 -30.3676642857 -7.18408571429 NA 0.787087742146 0.707276574963 NA 0.094488035162 0.094488035162 0.47619047619 0.0 0.0 NC_045512.2:2646-2675 - 2646 2675 10 Maximal GUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;2645;30;0&s=-&p=30&e=30&w=0&f=2646-2675-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:2646-2675&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -37.55638 1.0 2.73333333333 -13.7401390244 -46.4391 8.88272 NA 0.771662054371 0.890405339411 NA 0.390053719681 0.094488035162 0.466666666667 0.0 0.0 NC_045512.2:8094-8129 - 8094 8129 12 NotMaximal UUG NearCognate orf1ab =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;8093;36;0&s=-&p=30&e=30&w=0&f=8094-8129-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:8094-8129&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -37.8555666667 1.0 2.83333333333 -13.3607882353 -31.8149833333 -6.04058333337 NA 0.882562265994 0.292114601986 NA 0.565590102556 0.085388246785 0.416666666667 0.0 0.0 NC_045512.2:25632-25694 + 25632 25694 21 NotMaximal UUG NearCognate ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25631;63;0&p=30&e=30&w=0&f=25632-25694", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25632-25694&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -37.9181047619 1.0 2.73015873016 -13.8886081395 -35.8520761905 -2.06602857142 NA 0.445765912421 0.881341364154 NA 1.0 0.343053882468 0.444444444444 0.323076923077 0.0 NC_045512.2:21759-21860 + 21759 21860 34 NotMaximal AUG Canonical S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21758;102;0&p=30&e=30&w=0&f=21759-21860", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21759-21860&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -37.9223 0.9447 5.48153209175 -6.91819355706 -28.1235 -9.7988 0.0174377340062 0.445668240273 0.458463291551 0.0174377340062 0.357831678333 0.250281621358 0.392156862745 0.0 0.0 NC_045512.2:21774-21860 + 21774 21860 29 NotMaximal CUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21773;87;0&p=30&e=30&w=0&f=21774-21860", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21774-21860&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -37.9516965517 0.9691 4.91688934123 -7.71863955397 -27.7249482759 -10.2267482758 NA 0.445668240273 0.484531987628 NA 0.515484291063 0.255018720495 0.402298850575 0.0 0.0 NC_045512.2:21666-21860 + 21666 21860 65 NotMaximal GUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21665;195;0&p=30&e=30&w=0&f=21666-21860", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21666-21860&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -38.0946846154 0.9711 5.05187832492 -7.54069717545 -28.0618323077 -10.0328523077 NA 0.445668240273 0.255018720495 NA 0.655673123881 0.255018720495 0.379487179487 0.0 0.0 NC_045512.2:25589-25705 - 25589 25705 39 NotMaximal AAG NearCognate ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25588;117;0&s=-&p=30&e=30&w=0&f=25589-25705-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25589-25705&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -38.2861435897 1.0 2.8547008547 -13.4116131736 -37.1020974359 -1.1840461538 NA 0.660022790168 0.524125020348 NA 1.0 0.0 0.452991452991 0.167142857143 0.0 NC_045512.2:21663-21860 + 21663 21860 66 NotMaximal GUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21662;198;0&p=30&e=30&w=0&f=21663-21860", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21663-21860&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -38.4005257576 0.9715 5.03594077454 -7.62529336162 -27.7139393939 -10.6865863637 NA 0.445668240273 0.255018720495 NA 0.302757610288 0.255018720495 0.383838383838 0.0 0.0 NC_045512.2:22272-22325 - 22272 22325 18 NotMaximal AAG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22271;54;0&s=-&p=30&e=30&w=0&f=22272-22325-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22272-22325&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -38.4544277778 0.7561 5.52968224397 -6.95418399849 -35.5510166667 -2.90341111113 NA 0.373814097347 0.0174377340062 NA 0.0174377340062 0.0174377340062 0.333333333333 0.0 0.0 NC_045512.2:21593-21631 - 21593 21631 13 Maximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21592;39;0&s=-&p=30&e=30&w=0&f=21593-21631-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21593-21631&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -38.4917 0.9625 6.98122729792 -5.51360074058 -36.7207461538 -1.77095384615 NA 0.334803841771 0.085388246785 NA 0.0174377340062 0.0 0.384615384615 0.0 0.0 NC_045512.2:21672-21860 + 21672 21860 63 NotMaximal AUU NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21671;189;0&p=30&e=30&w=0&f=21672-21860", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21672-21860&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -38.5380587302 0.9702 5.14347234581 -7.49261513218 -28.033568254 -10.5044904762 NA 0.445668240273 0.255018720495 NA 0.902285528244 0.255018720495 0.380952380952 0.0 0.0 NC_045512.2:22161-22196 + 22161 22196 12 NotMaximal AUU NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22160;36;0&p=30&e=30&w=0&f=22161-22196", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22161-22196&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -38.6320083333 1.0 6.16666666667 -6.26464999999 -27.9361916667 -10.6958166666 NA 0.410525801726 0.74990721146 NA 0.094488035162 0.0174377340062 0.222222222222 3.0 0.0 NC_045512.2:21783-21860 + 21783 21860 26 NotMaximal AUG Canonical S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21782;78;0&p=30&e=30&w=0&f=21783-21860", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21783-21860&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -38.6475576923 0.9655 4.54832529085 -8.49709623232 -28.7560346154 -9.89152307692 0.0174377340062 0.445668240273 0.484531987628 0.0174377340062 0.574051766238 0.297965163601 0.371794871795 0.0 0.0 NC_045512.2:22194-22229 - 22194 22229 12 NotMaximal AAG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22193;36;0&s=-&p=30&e=30&w=0&f=22194-22229-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22194-22229&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -38.6653833333 0.9952 6.38726734721 -6.05350946366 -41.5168 2.8514166667 NA 0.480911606707 0.5710174182 NA 0.374041999023 0.0174377340062 0.472222222222 1.0 0.0 NC_045512.2:21678-21860 + 21678 21860 61 NotMaximal CUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21677;183;0&p=30&e=30&w=0&f=21678-21860", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21678-21860&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -38.7618196721 0.9692 5.21375012764 -7.43453727607 -27.9792704918 -10.7825491803 NA 0.445668240273 0.255018720495 NA 0.979003744099 0.255018720495 0.382513661202 0.0 0.0 NC_045512.2:25596-25694 + 25596 25694 33 NotMaximal AUG Canonical ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25595;99;0&p=30&e=30&w=0&f=25596-25694", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25596-25694&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -38.8401181818 1.0 2.94949494949 -13.1683962329 -40.3566575758 1.51653939396 0.406257528895 0.445765912421 0.603652938304 0.0 1.0 0.333954094091 0.454545454545 0.196428571429 0.0 3a.iORF2 NC_045512.2:21694-21789 + 21694 21789 32 Maximal AUC NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21693;96;0&p=30&e=30&w=0&f=21694-21789", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21694-21789&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -38.908878125 0.9662 6.41647744641 -6.0639000838 -44.542946875 5.63406875 NA 0.0174377340062 0.0174377340062 NA 0.540478593521 0.0174377340062 0.395833333333 0.0 0.0 NC_045512.2:21639-21860 + 21639 21860 74 NotMaximal CUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21638;222;0&p=30&e=30&w=0&f=21639-21860", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21639-21860&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -39.0796864865 0.9681 5.20036255821 -7.51480037191 -29.5222905405 -9.55739594596 NA 0.445668240273 0.0 NA 0.0174377340062 0.0 0.382882882883 0.126857142857 0.0 NC_045512.2:21651-21860 + 21651 21860 70 NotMaximal AUU NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21650;210;0&p=30&e=30&w=0&f=21651-21860", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21651-21860&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -39.2066471429 0.9732 5.08626796838 -7.70833298337 -28.31225 -10.8943971429 NA 0.445668240273 0.255018720495 NA 0.085388246785 0.0 0.380952380952 0.134271099744 0.0 NC_045512.2:23173-23220 + 23173 23220 16 Maximal AUG Canonical S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23172;48;0&p=30&e=30&w=0&f=23173-23220", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23173-23220&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -39.2919625 1.0 2.39583333333 -16.4001234783 -17.24793125 -22.04403125 0.308302132509 0.768494221065 0.0 0.0 1.0 0.0 0.375 0.0 0.0 NC_045512.2:21717-21860 + 21717 21860 48 NotMaximal AGG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21716;144;0&p=30&e=30&w=0&f=21717-21860", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21717-21860&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -39.4496354167 0.9609 5.39664078721 -7.31003544097 -29.5565875 -9.8930479167 NA 0.445668240273 0.395979163275 NA 0.844685007325 0.255018720495 0.388888888889 0.0 0.0 NC_045512.2:25589-25669 - 25589 25669 27 NotMaximal GUG NearCognate ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25588;81;0&s=-&p=30&e=30&w=0&f=25589-25669-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25589-25669&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -40.0402888889 1.0 2.87654320988 -13.9195854077 -38.6289666667 -1.41132222223 NA 0.660022790168 0.524125020348 NA 0.698352596451 0.0 0.407407407407 0.0 0.0 NC_045512.2:21684-21860 + 21684 21860 59 NotMaximal AAG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21683;177;0&p=30&e=30&w=0&f=21684-21860", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21684-21860&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -40.8207 0.9682 5.33963996248 -7.64484127897 -28.8882254237 -11.9324745763 NA 0.445668240273 0.255018720495 NA 0.477460524174 0.255018720495 0.378531073446 0.0 0.0 NC_045512.2:21798-21860 + 21798 21860 21 NotMaximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21797;63;0&p=30&e=30&w=0&f=21798-21860", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21798-21860&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -41.1397190476 0.981 4.00450174009 -10.273367754 -29.4832428571 -11.6564761905 NA 0.445668240273 0.508191437408 NA 0.850584405014 0.0174377340062 0.365079365079 0.0 0.0 NC_045512.2:21708-21860 + 21708 21860 51 NotMaximal AUU NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21707;153;0&p=30&e=30&w=0&f=21708-21860", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21708-21860&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -41.3379960784 0.9632 5.45174034875 -7.58253207856 -29.2381980392 -12.0997980392 NA 0.445668240273 0.255018720495 NA 0.482988767703 0.0 0.385620915033 0.0 0.0 NC_045512.2:21635-21664 - 21635 21664 10 NotMaximal ACG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21634;30;0&s=-&p=30&e=30&w=0&f=21635-21664-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21635-21664&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -41.85799 0.9519 6.74547381877 -6.20534466883 -41.73599 -0.122 NA 0.0174377340062 0.0 NA 0.302757610288 0.0 0.466666666667 1.25 0.0 NC_045512.2:21693-21734 - 21693 21734 14 Maximal AAG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21692;42;0&s=-&p=30&e=30&w=0&f=21693-21734-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21693-21734&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -42.0185857143 1.0 5.30952380952 -7.91381434978 -41.8759857143 -0.142600000014 NA 0.660413478756 0.361214390363 NA 0.954279667915 0.298736773563 0.380952380952 0.0 0.0 NC_045512.2:23064-23126 - 23064 23126 21 NotMaximal CUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23063;63;0&s=-&p=30&e=30&w=0&f=23064-23126-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23064-23126&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -42.6402809524 1.0 3.68253968254 -11.5790418104 -29.3214333333 -13.3188476191 NA 0.314807097509 0.641559498616 NA 0.094488035162 0.0 0.396825396825 0.0 0.0 NC_045512.2:21801-21860 + 21801 21860 20 NotMaximal AUA NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21800;60;0&p=30&e=30&w=0&f=21801-21860", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21801-21860&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -42.830845 0.9875 4.16553808447 -10.2821878306 -31.2024 -11.628445 NA 0.445668240273 0.508191437408 NA 0.601009278854 0.0174377340062 0.366666666667 0.0 0.0 NC_045512.2:23064-23129 - 23064 23129 22 Maximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23063;66;0&s=-&p=30&e=30&w=0&f=23064-23129-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23064-23129&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -42.9040318182 1.0 3.69696969697 -11.6051889344 -28.3006 -14.6034318182 NA 0.314807097509 0.466801237181 NA 0.5370796028 0.0 0.393939393939 0.0 0.0 NC_045512.2:21807-21860 + 21807 21860 18 NotMaximal CUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;21806;54;0&p=30&e=30&w=0&f=21807-21860", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:21807-21860&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -43.4519611111 1.0 4.38888888889 -9.90044683544 -28.6927333333 -14.7592277778 NA 0.445668240273 0.69020348364 NA 0.379146996581 0.0 0.37037037037 0.0 0.0 NC_045512.2:25589-25660 - 25589 25660 24 NotMaximal CUG NearCognate ORF3a =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;25588;72;0&s=-&p=30&e=30&w=0&f=25589-25660-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:25589-25660&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -43.9711458333 1.0 2.95833333333 -14.8634859155 -40.7053291667 -3.26581666663 NA 0.660022790168 0.524125020348 NA 0.916197297737 0.0 0.416666666667 0.0 0.0 NC_045512.2:22194-22238 - 22194 22238 15 Maximal AUG Canonical S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22193;45;0&s=-&p=30&e=30&w=0&f=22194-22238-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22194-22238&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -44.5297533333 0.9962 6.02092498888 -7.39583260305 -42.2280466667 -2.30170666663 0.273856421944 0.480911606707 0.365345922188 0.0174377340062 0.711102067394 0.226869607684 0.444444444444 0.9 0.0 NC_045512.2:23064-23123 - 23064 23123 20 NotMaximal GUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23063;60;0&s=-&p=30&e=30&w=0&f=23064-23123-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23064-23123&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -45.12022 1.0 3.76666666667 -11.978819469 -30.92005 -14.20017 NA 0.314807097509 0.641559498616 NA 0.975494058278 0.314807097509 0.383333333333 0.0 0.0 NC_045512.2:23046-23090 + 23046 23090 15 NotMaximal AUG Canonical S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23045;45;0&p=30&e=30&w=0&f=23046-23090", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23046-23090&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -45.1622666667 1.0 5.17777777778 -8.72232618026 -34.2262 -10.9360666667 0.959570242552 0.331828097021 0.9170796028 0.331828097021 1.0 0.331828097021 0.444444444444 0.0 0.0 NC_045512.2:22194-22253 - 22194 22253 20 Maximal UUG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22193;60;0&s=-&p=30&e=30&w=0&f=22194-22253-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22194-22253&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -47.819625 0.9971 5.96569374166 -8.01576934231 -45.699525 -2.1201 NA 0.480911606707 0.281100439525 NA 0.86611753215 0.221676705193 0.433333333333 0.714285714286 0.0 NC_045512.2:23064-23105 - 23064 23105 14 NotMaximal AAG NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;23063;42;0&s=-&p=30&e=30&w=0&f=23064-23105-", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:23064-23105&complement_wuhCor1=1&hgt.revCmplDisp_wuhCor1=1", "UCSCview") -48.6317571429 1.0 4.35714285714 -11.1613868853 -27.3387 -21.2930571429 NA 0.314807097509 0.641559498616 NA 1.0 0.314807097509 0.380952380952 0.0 0.0 NC_045512.2:22069-22098 + 22069 22098 10 Maximal AUA NearCognate S =hyperlink("https://data.broadinstitute.org/compbio1/cav.php?a=wuhCor1_c&i=NC_045512.2;22068;30;0&p=30&e=30&w=0&f=22069-22098", "CodAlignView") =hyperlink("http://genome.ucsc.edu/cgi-bin/hgTracks?db=wuhCor1&position=NC_045512.2:22069-22098&complement_wuhCor1=0&hgt.revCmplDisp_wuhCor1=0", "UCSCview") -56.32184 0.9653 7.7412862193 -7.27551448228 -57.75814 1.4363 NA 0.452648543057 0.359690704867 NA 0.267859352108 0.0 0.4 0.0 0.0